Multiple sequence alignment - TraesCS2D01G434700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G434700 chr2D 100.000 3072 0 0 1 3072 545853715 545856786 0.000000e+00 5674.0
1 TraesCS2D01G434700 chr2D 86.224 392 21 8 155 545 451009169 451008810 7.980000e-106 394.0
2 TraesCS2D01G434700 chr2B 94.874 1307 41 12 1289 2593 652413592 652414874 0.000000e+00 2019.0
3 TraesCS2D01G434700 chr2B 90.641 577 39 6 1 562 652412488 652413064 0.000000e+00 752.0
4 TraesCS2D01G434700 chr2B 91.412 524 34 6 667 1186 652413078 652413594 0.000000e+00 708.0
5 TraesCS2D01G434700 chr2A 95.885 972 23 2 1624 2593 689199760 689198804 0.000000e+00 1557.0
6 TraesCS2D01G434700 chr2A 91.783 572 39 6 1 565 689201455 689200885 0.000000e+00 789.0
7 TraesCS2D01G434700 chr2A 87.477 535 40 9 655 1186 689200890 689200380 2.640000e-165 592.0
8 TraesCS2D01G434700 chr2A 97.222 252 6 1 1365 1616 689200171 689199921 2.830000e-115 425.0
9 TraesCS2D01G434700 chr2A 95.370 108 5 0 1186 1293 362051403 362051296 4.070000e-39 172.0
10 TraesCS2D01G434700 chr2A 88.158 152 5 2 2593 2744 689198756 689198618 5.270000e-38 169.0
11 TraesCS2D01G434700 chr7B 86.000 500 53 8 55 553 60368813 60368330 1.260000e-143 520.0
12 TraesCS2D01G434700 chr7B 84.436 514 49 14 55 553 486730816 486731313 7.710000e-131 477.0
13 TraesCS2D01G434700 chr7B 92.486 173 11 2 2737 2907 141869071 141868899 2.370000e-61 246.0
14 TraesCS2D01G434700 chr7B 92.308 117 7 2 1184 1299 44762992 44762877 6.810000e-37 165.0
15 TraesCS2D01G434700 chr4B 85.800 500 54 7 55 553 59871466 59871949 5.870000e-142 514.0
16 TraesCS2D01G434700 chr6D 86.026 458 47 7 97 553 14447767 14448208 2.770000e-130 475.0
17 TraesCS2D01G434700 chr6D 92.000 175 12 2 2740 2912 366511379 366511553 8.510000e-61 244.0
18 TraesCS2D01G434700 chr6D 91.525 177 13 2 2740 2914 466521183 466521359 3.060000e-60 243.0
19 TraesCS2D01G434700 chr6D 95.192 104 5 0 558 661 389999695 389999798 6.810000e-37 165.0
20 TraesCS2D01G434700 chr6D 94.340 53 2 1 2994 3045 410154988 410155040 2.540000e-11 80.5
21 TraesCS2D01G434700 chr3A 88.747 391 40 3 1731 2121 108028107 108028493 2.770000e-130 475.0
22 TraesCS2D01G434700 chr3A 97.170 106 3 0 554 659 692869563 692869668 2.430000e-41 180.0
23 TraesCS2D01G434700 chr1A 88.491 391 41 3 1731 2121 537063778 537063392 1.290000e-128 470.0
24 TraesCS2D01G434700 chr1A 92.308 117 7 2 1184 1299 474171229 474171114 6.810000e-37 165.0
25 TraesCS2D01G434700 chr5A 86.158 419 48 7 744 1158 345361110 345360698 7.820000e-121 444.0
26 TraesCS2D01G434700 chr5A 80.242 496 63 17 1324 1796 345360631 345360148 1.050000e-89 340.0
27 TraesCS2D01G434700 chr5A 92.308 117 7 2 1184 1299 367605384 367605499 6.810000e-37 165.0
28 TraesCS2D01G434700 chr5B 85.014 347 31 10 55 395 42945219 42945550 1.770000e-87 333.0
29 TraesCS2D01G434700 chr5B 92.442 172 11 2 2742 2911 575061322 575061151 8.510000e-61 244.0
30 TraesCS2D01G434700 chr5B 93.103 116 8 0 1176 1291 511610735 511610850 1.460000e-38 171.0
31 TraesCS2D01G434700 chr5B 95.192 104 5 0 560 663 475312694 475312591 6.810000e-37 165.0
32 TraesCS2D01G434700 chr4D 92.941 170 10 2 2741 2908 93338041 93338210 2.370000e-61 246.0
33 TraesCS2D01G434700 chr1D 91.061 179 14 2 2741 2917 178466471 178466293 1.100000e-59 241.0
34 TraesCS2D01G434700 chr4A 90.608 181 14 3 2730 2908 195972604 195972425 1.420000e-58 237.0
35 TraesCS2D01G434700 chr4A 89.947 189 12 7 2742 2925 362067911 362068097 1.420000e-58 237.0
36 TraesCS2D01G434700 chr4A 92.793 111 5 3 561 671 543742176 543742069 1.140000e-34 158.0
37 TraesCS2D01G434700 chr7D 88.083 193 21 2 2738 2929 561004098 561004289 8.570000e-56 228.0
38 TraesCS2D01G434700 chr1B 94.309 123 5 2 1170 1291 159922516 159922637 1.450000e-43 187.0
39 TraesCS2D01G434700 chr1B 95.495 111 5 0 1181 1291 626498460 626498570 8.750000e-41 178.0
40 TraesCS2D01G434700 chr7A 97.059 102 3 0 561 662 629780117 629780016 4.070000e-39 172.0
41 TraesCS2D01G434700 chr7A 95.370 108 4 1 556 663 641450305 641450199 1.460000e-38 171.0
42 TraesCS2D01G434700 chr5D 96.190 105 4 0 1184 1288 314916186 314916290 4.070000e-39 172.0
43 TraesCS2D01G434700 chr3D 96.117 103 4 0 560 662 48071009 48070907 5.270000e-38 169.0
44 TraesCS2D01G434700 chr3D 92.035 113 9 0 547 659 24128900 24129012 3.170000e-35 159.0
45 TraesCS2D01G434700 chr6B 91.803 122 4 3 1177 1293 579542308 579542428 6.810000e-37 165.0
46 TraesCS2D01G434700 chr3B 93.519 108 7 0 561 668 803625729 803625622 8.820000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G434700 chr2D 545853715 545856786 3071 False 5674.000000 5674 100.000 1 3072 1 chr2D.!!$F1 3071
1 TraesCS2D01G434700 chr2B 652412488 652414874 2386 False 1159.666667 2019 92.309 1 2593 3 chr2B.!!$F1 2592
2 TraesCS2D01G434700 chr2A 689198618 689201455 2837 True 706.400000 1557 92.105 1 2744 5 chr2A.!!$R2 2743
3 TraesCS2D01G434700 chr5A 345360148 345361110 962 True 392.000000 444 83.200 744 1796 2 chr5A.!!$R1 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 587 0.115745 TTCCAAGGTACTCCCTCCGT 59.884 55.0 0.0 0.0 45.47 4.69 F
1183 1218 0.036022 GAGGGTCTGCTCTGTTTGCT 59.964 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 2077 1.696832 GCCTCGCCGTTTTAGCTGAG 61.697 60.0 0.0 0.0 33.56 3.35 R
2681 3080 0.250793 TATGTTAGTGTGGGGTGGCG 59.749 55.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 6.293244 GCGGCCGTAATAAATAGTCTTGAAAT 60.293 38.462 28.70 0.00 0.00 2.17
53 55 7.288672 CGGCCGTAATAAATAGTCTTGAAATC 58.711 38.462 19.50 0.00 0.00 2.17
121 126 1.341187 ACGGATCCTTCTCGTCTTCCT 60.341 52.381 10.75 0.00 30.89 3.36
123 128 2.661718 GGATCCTTCTCGTCTTCCTCT 58.338 52.381 3.84 0.00 0.00 3.69
140 145 1.403679 CTCTTGATTCGAGTCGCCTCT 59.596 52.381 7.92 0.00 35.43 3.69
260 271 3.869272 CGCTTGATGCTGGGTCGC 61.869 66.667 0.00 0.00 40.11 5.19
274 285 0.795735 GGTCGCTTCGTCGATTCGAA 60.796 55.000 10.87 10.04 45.46 3.71
284 295 2.517450 CGATTCGAACCTGCTCGCC 61.517 63.158 0.00 0.00 38.73 5.54
294 305 3.757248 CTGCTCGCCCCCGCTATTT 62.757 63.158 0.00 0.00 0.00 1.40
309 320 2.195922 CTATTTCAATTTGGGCGCTGC 58.804 47.619 7.64 0.00 0.00 5.25
333 344 2.238942 TTGATGATCCGGTCGATTGG 57.761 50.000 0.00 0.00 0.00 3.16
348 359 2.319844 GATTGGGGATAAGCAAAGGGG 58.680 52.381 0.00 0.00 0.00 4.79
360 372 3.937372 AAAGGGGGTCGGGGATCGT 62.937 63.158 0.00 0.00 40.32 3.73
367 379 1.680860 GGGTCGGGGATCGTTGATTTT 60.681 52.381 0.00 0.00 40.32 1.82
369 381 2.159435 GGTCGGGGATCGTTGATTTTTG 60.159 50.000 0.00 0.00 40.32 2.44
384 396 2.200373 TTTTGAAGTAGCTGGCCTCC 57.800 50.000 3.32 0.00 0.00 4.30
386 398 2.202946 GAAGTAGCTGGCCTCCGC 60.203 66.667 3.32 3.97 0.00 5.54
422 434 3.211865 TGATCTGATCTGGATTTGCAGC 58.788 45.455 17.82 0.00 0.00 5.25
430 442 1.471684 CTGGATTTGCAGCTTGAGGTC 59.528 52.381 0.00 0.00 0.00 3.85
507 523 5.453903 CCTGGGTAGATCCAACTATTCTGTG 60.454 48.000 0.00 0.00 36.21 3.66
511 527 5.128827 GGTAGATCCAACTATTCTGTGGTGA 59.871 44.000 0.00 0.00 35.97 4.02
518 534 4.008074 ACTATTCTGTGGTGACTGTTGG 57.992 45.455 0.00 0.00 0.00 3.77
525 541 4.345547 TCTGTGGTGACTGTTGGTATGTAA 59.654 41.667 0.00 0.00 0.00 2.41
559 575 2.096496 CGATTAGCTTGCTGTTCCAAGG 59.904 50.000 5.26 0.00 41.88 3.61
563 579 1.897560 GCTTGCTGTTCCAAGGTACT 58.102 50.000 4.33 0.00 41.88 2.73
564 580 1.807142 GCTTGCTGTTCCAAGGTACTC 59.193 52.381 4.33 0.00 41.88 2.59
565 581 2.427506 CTTGCTGTTCCAAGGTACTCC 58.572 52.381 0.00 0.00 38.49 3.85
566 582 0.690762 TGCTGTTCCAAGGTACTCCC 59.309 55.000 0.00 0.00 38.49 4.30
568 584 1.066071 GCTGTTCCAAGGTACTCCCTC 60.066 57.143 0.00 0.00 45.47 4.30
569 585 1.555533 CTGTTCCAAGGTACTCCCTCC 59.444 57.143 0.00 0.00 45.47 4.30
570 586 0.535797 GTTCCAAGGTACTCCCTCCG 59.464 60.000 0.00 0.00 45.47 4.63
571 587 0.115745 TTCCAAGGTACTCCCTCCGT 59.884 55.000 0.00 0.00 45.47 4.69
572 588 0.115745 TCCAAGGTACTCCCTCCGTT 59.884 55.000 0.00 0.00 45.47 4.44
573 589 0.535797 CCAAGGTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 45.47 3.95
574 590 0.535797 CAAGGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 45.47 3.62
575 591 0.115745 AAGGTACTCCCTCCGTTCCA 59.884 55.000 0.00 0.00 45.47 3.53
576 592 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
577 593 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
578 594 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
579 595 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
580 596 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
581 597 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
582 598 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
583 599 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
584 600 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
585 601 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
586 602 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
587 603 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
588 604 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
589 605 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
590 606 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
591 607 5.874810 TCCGTTCCAAAATAGATGACTCAAG 59.125 40.000 0.00 0.00 0.00 3.02
592 608 5.643777 CCGTTCCAAAATAGATGACTCAAGT 59.356 40.000 0.00 0.00 0.00 3.16
593 609 6.149474 CCGTTCCAAAATAGATGACTCAAGTT 59.851 38.462 0.00 0.00 0.00 2.66
594 610 7.308589 CCGTTCCAAAATAGATGACTCAAGTTT 60.309 37.037 0.00 0.00 0.00 2.66
595 611 7.535258 CGTTCCAAAATAGATGACTCAAGTTTG 59.465 37.037 0.00 0.00 0.00 2.93
596 612 8.352942 GTTCCAAAATAGATGACTCAAGTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
597 613 9.567776 TTCCAAAATAGATGACTCAAGTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
598 614 8.999431 TCCAAAATAGATGACTCAAGTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
599 615 9.003658 CCAAAATAGATGACTCAAGTTTGTACT 57.996 33.333 0.00 0.00 35.68 2.73
635 651 9.744468 ACAAAATTAGTACAAAGTTGGTTCATC 57.256 29.630 0.00 0.00 0.00 2.92
636 652 9.965824 CAAAATTAGTACAAAGTTGGTTCATCT 57.034 29.630 0.00 0.00 0.00 2.90
643 659 8.576442 AGTACAAAGTTGGTTCATCTATTTTGG 58.424 33.333 0.00 0.00 0.00 3.28
644 660 7.595819 ACAAAGTTGGTTCATCTATTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
645 661 8.017418 ACAAAGTTGGTTCATCTATTTTGGAA 57.983 30.769 0.00 0.00 0.00 3.53
646 662 7.926018 ACAAAGTTGGTTCATCTATTTTGGAAC 59.074 33.333 0.00 0.00 39.04 3.62
647 663 6.254281 AGTTGGTTCATCTATTTTGGAACG 57.746 37.500 0.00 0.00 40.30 3.95
648 664 5.183140 AGTTGGTTCATCTATTTTGGAACGG 59.817 40.000 0.00 0.00 40.30 4.44
649 665 4.912586 TGGTTCATCTATTTTGGAACGGA 58.087 39.130 0.00 0.00 40.30 4.69
650 666 4.941263 TGGTTCATCTATTTTGGAACGGAG 59.059 41.667 0.00 0.00 40.30 4.63
651 667 4.335594 GGTTCATCTATTTTGGAACGGAGG 59.664 45.833 0.00 0.00 40.30 4.30
652 668 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
653 669 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
660 676 1.553706 TGGAACGGAGGGAGTAGTTC 58.446 55.000 0.00 0.00 41.40 3.01
674 694 3.375699 AGTAGTTCGGTCCTGGAATCAT 58.624 45.455 0.00 0.00 0.00 2.45
721 744 4.939509 GCTTGAAGCGAAATACCACTTA 57.060 40.909 0.00 0.00 0.00 2.24
726 749 4.094294 TGAAGCGAAATACCACTTATGTGC 59.906 41.667 3.24 0.00 42.54 4.57
735 758 4.766404 ACCACTTATGTGCTAGTTTTGC 57.234 40.909 3.24 0.00 42.54 3.68
740 763 5.122239 CACTTATGTGCTAGTTTTGCAGCTA 59.878 40.000 0.00 0.00 41.41 3.32
741 764 5.122396 ACTTATGTGCTAGTTTTGCAGCTAC 59.878 40.000 0.00 0.00 41.41 3.58
742 765 2.844946 TGTGCTAGTTTTGCAGCTACA 58.155 42.857 0.00 0.00 41.41 2.74
766 789 4.750098 CCGTGTGGAGGTGATGTTAATATC 59.250 45.833 5.31 5.31 37.49 1.63
770 793 4.757149 GTGGAGGTGATGTTAATATCTGGC 59.243 45.833 12.72 4.29 0.00 4.85
779 802 6.938596 TGATGTTAATATCTGGCATTCTGAGG 59.061 38.462 12.72 0.00 0.00 3.86
782 805 6.100279 TGTTAATATCTGGCATTCTGAGGAGT 59.900 38.462 0.00 0.00 0.00 3.85
785 808 3.107402 TCTGGCATTCTGAGGAGTAGT 57.893 47.619 0.00 0.00 0.00 2.73
847 870 6.589830 AAAACTGCAGCTAGTTACATATCG 57.410 37.500 15.27 0.00 39.86 2.92
905 930 7.206789 TGATAGGAGTTTTGGGATGTTATGA 57.793 36.000 0.00 0.00 0.00 2.15
906 931 7.282585 TGATAGGAGTTTTGGGATGTTATGAG 58.717 38.462 0.00 0.00 0.00 2.90
907 932 5.779241 AGGAGTTTTGGGATGTTATGAGA 57.221 39.130 0.00 0.00 0.00 3.27
942 967 6.183361 TGTTTCAGACCTCCTAACCATGTAAA 60.183 38.462 0.00 0.00 0.00 2.01
973 999 5.051508 GCATACCATTTGCATTTCGTTGATC 60.052 40.000 0.00 0.00 39.90 2.92
994 1020 1.603456 TTGTTCTTCATTCCGCAGCA 58.397 45.000 0.00 0.00 0.00 4.41
1148 1177 5.632764 CGAGCATAATATTGTGGAGTGAGAG 59.367 44.000 13.35 0.00 0.00 3.20
1183 1218 0.036022 GAGGGTCTGCTCTGTTTGCT 59.964 55.000 0.00 0.00 0.00 3.91
1184 1219 1.276421 GAGGGTCTGCTCTGTTTGCTA 59.724 52.381 0.00 0.00 0.00 3.49
1185 1220 1.002544 AGGGTCTGCTCTGTTTGCTAC 59.997 52.381 0.00 0.00 0.00 3.58
1186 1221 1.002544 GGGTCTGCTCTGTTTGCTACT 59.997 52.381 0.00 0.00 0.00 2.57
1187 1222 2.342179 GGTCTGCTCTGTTTGCTACTC 58.658 52.381 0.00 0.00 0.00 2.59
1188 1223 2.342179 GTCTGCTCTGTTTGCTACTCC 58.658 52.381 0.00 0.00 0.00 3.85
1189 1224 1.276421 TCTGCTCTGTTTGCTACTCCC 59.724 52.381 0.00 0.00 0.00 4.30
1190 1225 1.277557 CTGCTCTGTTTGCTACTCCCT 59.722 52.381 0.00 0.00 0.00 4.20
1191 1226 1.276421 TGCTCTGTTTGCTACTCCCTC 59.724 52.381 0.00 0.00 0.00 4.30
1192 1227 1.406205 GCTCTGTTTGCTACTCCCTCC 60.406 57.143 0.00 0.00 0.00 4.30
1193 1228 0.895530 TCTGTTTGCTACTCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
1194 1229 0.608640 CTGTTTGCTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
1195 1230 0.606604 TGTTTGCTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
1196 1231 0.896226 GTTTGCTACTCCCTCCGTCT 59.104 55.000 0.00 0.00 0.00 4.18
1197 1232 0.895530 TTTGCTACTCCCTCCGTCTG 59.104 55.000 0.00 0.00 0.00 3.51
1198 1233 0.039180 TTGCTACTCCCTCCGTCTGA 59.961 55.000 0.00 0.00 0.00 3.27
1199 1234 0.039180 TGCTACTCCCTCCGTCTGAA 59.961 55.000 0.00 0.00 0.00 3.02
1200 1235 1.183549 GCTACTCCCTCCGTCTGAAA 58.816 55.000 0.00 0.00 0.00 2.69
1201 1236 1.549170 GCTACTCCCTCCGTCTGAAAA 59.451 52.381 0.00 0.00 0.00 2.29
1202 1237 2.028385 GCTACTCCCTCCGTCTGAAAAA 60.028 50.000 0.00 0.00 0.00 1.94
1203 1238 2.841442 ACTCCCTCCGTCTGAAAAAG 57.159 50.000 0.00 0.00 0.00 2.27
1204 1239 1.270893 ACTCCCTCCGTCTGAAAAAGC 60.271 52.381 0.00 0.00 0.00 3.51
1205 1240 1.002544 CTCCCTCCGTCTGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
1206 1241 1.420138 TCCCTCCGTCTGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
1207 1242 1.537202 CCCTCCGTCTGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
1208 1243 2.222027 CCTCCGTCTGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
1209 1244 2.618709 CCTCCGTCTGAAAAAGCTTGTT 59.381 45.455 0.10 0.10 0.00 2.83
1210 1245 3.304057 CCTCCGTCTGAAAAAGCTTGTTC 60.304 47.826 20.63 20.63 0.00 3.18
1211 1246 2.616842 TCCGTCTGAAAAAGCTTGTTCC 59.383 45.455 23.66 9.84 0.00 3.62
1212 1247 2.618709 CCGTCTGAAAAAGCTTGTTCCT 59.381 45.455 23.66 0.00 0.00 3.36
1213 1248 3.304057 CCGTCTGAAAAAGCTTGTTCCTC 60.304 47.826 23.66 13.78 0.00 3.71
1214 1249 3.312421 CGTCTGAAAAAGCTTGTTCCTCA 59.688 43.478 23.66 7.96 0.00 3.86
1215 1250 4.201910 CGTCTGAAAAAGCTTGTTCCTCAA 60.202 41.667 23.66 6.89 34.61 3.02
1216 1251 5.650543 GTCTGAAAAAGCTTGTTCCTCAAA 58.349 37.500 23.66 6.55 35.48 2.69
1217 1252 6.276091 GTCTGAAAAAGCTTGTTCCTCAAAT 58.724 36.000 23.66 0.00 35.48 2.32
1218 1253 6.199719 GTCTGAAAAAGCTTGTTCCTCAAATG 59.800 38.462 23.66 7.77 35.48 2.32
1219 1254 5.358922 TGAAAAAGCTTGTTCCTCAAATGG 58.641 37.500 23.66 0.00 35.48 3.16
1220 1255 5.128499 TGAAAAAGCTTGTTCCTCAAATGGA 59.872 36.000 23.66 2.00 35.48 3.41
1221 1256 5.813513 AAAAGCTTGTTCCTCAAATGGAT 57.186 34.783 0.00 0.00 35.83 3.41
1222 1257 4.796038 AAGCTTGTTCCTCAAATGGATG 57.204 40.909 0.00 0.00 35.83 3.51
1223 1258 3.771216 AGCTTGTTCCTCAAATGGATGT 58.229 40.909 0.00 0.00 35.83 3.06
1224 1259 4.922206 AGCTTGTTCCTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.83 2.29
1225 1260 5.513233 AGCTTGTTCCTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.83 2.29
1226 1261 5.591877 AGCTTGTTCCTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.83 2.24
1227 1262 5.591877 GCTTGTTCCTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.83 1.98
1228 1263 6.767902 GCTTGTTCCTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.83 1.98
1229 1264 7.041508 GCTTGTTCCTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.83 2.43
1230 1265 6.291377 TGTTCCTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.83 3.42
1231 1266 6.126796 TGTTCCTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.83 3.49
1232 1267 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
1233 1268 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
1234 1269 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
1235 1270 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
1236 1271 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
1237 1272 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
1238 1273 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
1239 1274 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
1240 1275 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
1241 1276 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
1242 1277 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
1254 1289 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
1255 1290 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
1256 1291 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
1257 1292 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
1258 1293 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
1259 1294 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
1260 1295 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
1261 1296 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
1262 1297 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
1263 1298 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
1264 1299 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
1265 1300 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
1266 1301 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
1267 1302 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
1268 1303 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
1269 1304 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1270 1305 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1271 1306 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
1272 1307 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
1273 1308 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
1274 1309 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
1352 1388 7.263100 TGTAGGATTTGTCATGATGTAATGC 57.737 36.000 0.00 4.90 0.00 3.56
1361 1397 7.172868 TGTCATGATGTAATGCCATTTTCTT 57.827 32.000 0.00 0.00 0.00 2.52
1510 1691 7.885922 TGTAACTTCTTTGCCTGGTAATATTGA 59.114 33.333 0.00 0.00 0.00 2.57
1621 1816 9.772973 AATCTGTTACGGTTATCAAAGCATATA 57.227 29.630 0.00 0.00 32.47 0.86
1622 1817 8.583810 TCTGTTACGGTTATCAAAGCATATAC 57.416 34.615 0.00 0.00 32.47 1.47
1729 2077 8.412456 TCTATCAACTGAAATCTGATGTCTCTC 58.588 37.037 9.16 0.00 32.22 3.20
1874 2224 5.448438 TGCACATTCAATCTGTTCGTTTAC 58.552 37.500 0.00 0.00 0.00 2.01
1977 2327 0.514691 CGCCTTGAGCAAGAGACAAC 59.485 55.000 11.61 0.00 44.04 3.32
2133 2483 7.458397 TGTACTATCTGTTCATTTCTTTGGGT 58.542 34.615 0.00 0.00 0.00 4.51
2277 2627 5.842619 TCGTAAATTTTGTCGATTTCCGA 57.157 34.783 0.00 0.00 46.35 4.55
2441 2792 0.978907 TGGAGTGCTTCAGATGCTCA 59.021 50.000 9.56 1.32 0.00 4.26
2487 2838 2.357952 AGACGCTGGAAAGTTTTTGGAC 59.642 45.455 0.00 0.00 0.00 4.02
2528 2879 8.552083 TGATTCAAATCGTAATGCAGCTATAT 57.448 30.769 0.00 0.00 38.26 0.86
2576 2927 7.865385 TGTTCATTGGCAGTGTTTTATTCTTAC 59.135 33.333 9.95 0.00 0.00 2.34
2607 3006 5.365021 TGGATGGTTGTTTGGATTGTTTT 57.635 34.783 0.00 0.00 0.00 2.43
2627 3026 6.985645 TGTTTTCATATATTTGGCATGCCTTC 59.014 34.615 35.53 11.94 36.94 3.46
2678 3077 7.881912 TCTAAATATCTAAATAGCCACCCCA 57.118 36.000 0.00 0.00 0.00 4.96
2679 3078 7.686434 TCTAAATATCTAAATAGCCACCCCAC 58.314 38.462 0.00 0.00 0.00 4.61
2680 3079 5.922960 AATATCTAAATAGCCACCCCACA 57.077 39.130 0.00 0.00 0.00 4.17
2681 3080 3.577805 ATCTAAATAGCCACCCCACAC 57.422 47.619 0.00 0.00 0.00 3.82
2703 3102 3.432467 CGCCACCCCACACTAACATATTA 60.432 47.826 0.00 0.00 0.00 0.98
2706 3105 5.751586 CCACCCCACACTAACATATTACTT 58.248 41.667 0.00 0.00 0.00 2.24
2744 3143 2.362736 CACCTCAGCATGCAACATACT 58.637 47.619 21.98 0.00 34.76 2.12
2745 3144 2.353889 CACCTCAGCATGCAACATACTC 59.646 50.000 21.98 0.00 34.76 2.59
2746 3145 1.945394 CCTCAGCATGCAACATACTCC 59.055 52.381 21.98 0.00 34.76 3.85
2747 3146 1.945394 CTCAGCATGCAACATACTCCC 59.055 52.381 21.98 0.00 34.76 4.30
2748 3147 1.561076 TCAGCATGCAACATACTCCCT 59.439 47.619 21.98 0.00 34.76 4.20
2749 3148 2.025981 TCAGCATGCAACATACTCCCTT 60.026 45.455 21.98 0.00 34.76 3.95
2750 3149 2.357009 CAGCATGCAACATACTCCCTTC 59.643 50.000 21.98 0.00 0.00 3.46
2751 3150 1.331756 GCATGCAACATACTCCCTTCG 59.668 52.381 14.21 0.00 0.00 3.79
2752 3151 2.632377 CATGCAACATACTCCCTTCGT 58.368 47.619 0.00 0.00 0.00 3.85
2753 3152 2.851263 TGCAACATACTCCCTTCGTT 57.149 45.000 0.00 0.00 0.00 3.85
2754 3153 2.695359 TGCAACATACTCCCTTCGTTC 58.305 47.619 0.00 0.00 0.00 3.95
2755 3154 2.007608 GCAACATACTCCCTTCGTTCC 58.992 52.381 0.00 0.00 0.00 3.62
2756 3155 2.354805 GCAACATACTCCCTTCGTTCCT 60.355 50.000 0.00 0.00 0.00 3.36
2757 3156 3.118884 GCAACATACTCCCTTCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
2758 3157 4.622220 GCAACATACTCCCTTCGTTCCTAA 60.622 45.833 0.00 0.00 0.00 2.69
2759 3158 5.484715 CAACATACTCCCTTCGTTCCTAAA 58.515 41.667 0.00 0.00 0.00 1.85
2760 3159 5.952347 ACATACTCCCTTCGTTCCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
2761 3160 7.270047 CAACATACTCCCTTCGTTCCTAAATA 58.730 38.462 0.00 0.00 0.00 1.40
2762 3161 7.613551 ACATACTCCCTTCGTTCCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
2763 3162 8.030913 ACATACTCCCTTCGTTCCTAAATATT 57.969 34.615 0.00 0.00 0.00 1.28
2764 3163 8.491958 ACATACTCCCTTCGTTCCTAAATATTT 58.508 33.333 5.89 5.89 0.00 1.40
2765 3164 8.774586 CATACTCCCTTCGTTCCTAAATATTTG 58.225 37.037 11.05 1.40 0.00 2.32
2766 3165 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2767 3166 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2768 3167 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2769 3168 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2770 3169 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2771 3170 8.182227 CCCTTCGTTCCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2772 3171 8.947115 CCTTCGTTCCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2788 3187 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2789 3188 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2790 3189 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2791 3190 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2792 3191 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2793 3192 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2794 3193 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2795 3194 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2796 3195 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2798 3197 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2799 3198 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2800 3199 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2801 3200 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2802 3201 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2803 3202 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2804 3203 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2805 3204 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2806 3205 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2807 3206 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2808 3207 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2809 3208 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2810 3209 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2811 3210 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2812 3211 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2813 3212 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2814 3213 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2815 3214 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2816 3215 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2817 3216 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2818 3217 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2819 3218 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2820 3219 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2821 3220 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2822 3221 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2899 3298 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
2900 3299 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
2901 3300 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
2902 3301 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
2903 3302 8.731591 ATAAATATTTAGGAACGGAGGGAGTA 57.268 34.615 13.15 0.00 0.00 2.59
2904 3303 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
2905 3304 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
2906 3305 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
2907 3306 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
2908 3307 1.006758 AGGAACGGAGGGAGTACATGA 59.993 52.381 0.00 0.00 0.00 3.07
2909 3308 1.409427 GGAACGGAGGGAGTACATGAG 59.591 57.143 0.00 0.00 0.00 2.90
2910 3309 2.376109 GAACGGAGGGAGTACATGAGA 58.624 52.381 0.00 0.00 0.00 3.27
2911 3310 2.526888 ACGGAGGGAGTACATGAGAA 57.473 50.000 0.00 0.00 0.00 2.87
2912 3311 2.816411 ACGGAGGGAGTACATGAGAAA 58.184 47.619 0.00 0.00 0.00 2.52
2913 3312 3.170717 ACGGAGGGAGTACATGAGAAAA 58.829 45.455 0.00 0.00 0.00 2.29
2914 3313 3.581332 ACGGAGGGAGTACATGAGAAAAA 59.419 43.478 0.00 0.00 0.00 1.94
2915 3314 4.184629 CGGAGGGAGTACATGAGAAAAAG 58.815 47.826 0.00 0.00 0.00 2.27
2916 3315 4.518249 GGAGGGAGTACATGAGAAAAAGG 58.482 47.826 0.00 0.00 0.00 3.11
2917 3316 4.019231 GGAGGGAGTACATGAGAAAAAGGT 60.019 45.833 0.00 0.00 0.00 3.50
2918 3317 5.167303 AGGGAGTACATGAGAAAAAGGTC 57.833 43.478 0.00 0.00 0.00 3.85
2919 3318 4.597507 AGGGAGTACATGAGAAAAAGGTCA 59.402 41.667 0.00 0.00 0.00 4.02
2920 3319 4.695928 GGGAGTACATGAGAAAAAGGTCAC 59.304 45.833 0.00 0.00 0.00 3.67
2921 3320 4.695928 GGAGTACATGAGAAAAAGGTCACC 59.304 45.833 0.00 0.00 0.00 4.02
2922 3321 5.513267 GGAGTACATGAGAAAAAGGTCACCT 60.513 44.000 0.00 0.00 33.87 4.00
2924 3323 5.765182 AGTACATGAGAAAAAGGTCACCTTG 59.235 40.000 10.77 0.00 43.92 3.61
2925 3324 4.792068 ACATGAGAAAAAGGTCACCTTGA 58.208 39.130 10.77 0.00 43.92 3.02
2926 3325 5.388654 ACATGAGAAAAAGGTCACCTTGAT 58.611 37.500 10.77 1.28 43.92 2.57
2927 3326 6.542821 ACATGAGAAAAAGGTCACCTTGATA 58.457 36.000 10.77 0.00 43.92 2.15
2928 3327 7.177878 ACATGAGAAAAAGGTCACCTTGATAT 58.822 34.615 10.77 0.00 43.92 1.63
2929 3328 7.121759 ACATGAGAAAAAGGTCACCTTGATATG 59.878 37.037 10.77 11.46 43.92 1.78
2930 3329 5.415701 TGAGAAAAAGGTCACCTTGATATGC 59.584 40.000 10.77 0.00 43.92 3.14
2931 3330 5.324409 AGAAAAAGGTCACCTTGATATGCA 58.676 37.500 10.77 0.00 43.92 3.96
2932 3331 5.774690 AGAAAAAGGTCACCTTGATATGCAA 59.225 36.000 10.77 0.00 43.92 4.08
2933 3332 6.267471 AGAAAAAGGTCACCTTGATATGCAAA 59.733 34.615 10.77 0.00 43.92 3.68
2934 3333 5.391312 AAAGGTCACCTTGATATGCAAAC 57.609 39.130 10.77 0.00 43.92 2.93
2935 3334 4.032960 AGGTCACCTTGATATGCAAACA 57.967 40.909 0.00 0.00 35.74 2.83
2936 3335 4.603131 AGGTCACCTTGATATGCAAACAT 58.397 39.130 0.00 0.00 40.49 2.71
2937 3336 4.400251 AGGTCACCTTGATATGCAAACATG 59.600 41.667 0.00 0.00 37.04 3.21
2938 3337 4.107622 GTCACCTTGATATGCAAACATGC 58.892 43.478 0.00 0.00 37.04 4.06
2939 3338 4.018490 TCACCTTGATATGCAAACATGCT 58.982 39.130 0.00 0.00 37.04 3.79
2940 3339 4.463539 TCACCTTGATATGCAAACATGCTT 59.536 37.500 0.00 0.00 37.04 3.91
2941 3340 5.651576 TCACCTTGATATGCAAACATGCTTA 59.348 36.000 0.00 0.94 37.04 3.09
2942 3341 6.152492 TCACCTTGATATGCAAACATGCTTAA 59.848 34.615 0.00 0.00 37.04 1.85
2943 3342 6.982141 CACCTTGATATGCAAACATGCTTAAT 59.018 34.615 0.00 0.00 37.04 1.40
2944 3343 7.493320 CACCTTGATATGCAAACATGCTTAATT 59.507 33.333 0.00 0.00 37.04 1.40
2945 3344 8.042515 ACCTTGATATGCAAACATGCTTAATTT 58.957 29.630 0.00 0.00 37.04 1.82
2946 3345 8.885722 CCTTGATATGCAAACATGCTTAATTTT 58.114 29.630 0.00 0.00 37.04 1.82
2947 3346 9.910511 CTTGATATGCAAACATGCTTAATTTTC 57.089 29.630 0.00 0.00 37.04 2.29
2948 3347 8.999220 TGATATGCAAACATGCTTAATTTTCA 57.001 26.923 0.00 0.00 37.04 2.69
2949 3348 9.602568 TGATATGCAAACATGCTTAATTTTCAT 57.397 25.926 0.00 0.00 37.04 2.57
2951 3350 6.724694 TGCAAACATGCTTAATTTTCATCC 57.275 33.333 2.22 0.00 35.49 3.51
2952 3351 6.465948 TGCAAACATGCTTAATTTTCATCCT 58.534 32.000 2.22 0.00 35.49 3.24
2953 3352 7.609960 TGCAAACATGCTTAATTTTCATCCTA 58.390 30.769 2.22 0.00 35.49 2.94
2954 3353 8.259411 TGCAAACATGCTTAATTTTCATCCTAT 58.741 29.630 2.22 0.00 35.49 2.57
2955 3354 9.101655 GCAAACATGCTTAATTTTCATCCTATT 57.898 29.630 0.00 0.00 0.00 1.73
2959 3358 9.918630 ACATGCTTAATTTTCATCCTATTATGC 57.081 29.630 0.00 0.00 36.36 3.14
2960 3359 9.917129 CATGCTTAATTTTCATCCTATTATGCA 57.083 29.630 13.42 13.42 43.16 3.96
3068 3467 7.781324 AAAATCAAATACCATTGACACTCCT 57.219 32.000 0.00 0.00 41.78 3.69
3069 3468 8.877864 AAAATCAAATACCATTGACACTCCTA 57.122 30.769 0.00 0.00 41.78 2.94
3070 3469 8.877864 AAATCAAATACCATTGACACTCCTAA 57.122 30.769 0.00 0.00 41.78 2.69
3071 3470 8.877864 AATCAAATACCATTGACACTCCTAAA 57.122 30.769 0.00 0.00 41.78 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.158384 CAATTGTATCGTTGTCTTGTGCC 58.842 43.478 0.00 0.00 0.00 5.01
185 196 1.268625 ACGGGAAAAGAAATCAACGGC 59.731 47.619 0.00 0.00 0.00 5.68
284 295 1.202521 GCCCAAATTGAAATAGCGGGG 60.203 52.381 0.00 0.00 37.39 5.73
294 305 1.289694 CAAGCAGCGCCCAAATTGA 59.710 52.632 2.29 0.00 0.00 2.57
309 320 2.616960 TCGACCGGATCATCAAACAAG 58.383 47.619 9.46 0.00 0.00 3.16
333 344 0.465642 CGACCCCCTTTGCTTATCCC 60.466 60.000 0.00 0.00 0.00 3.85
348 359 1.746470 AAAATCAACGATCCCCGACC 58.254 50.000 0.00 0.00 41.76 4.79
360 372 4.151883 AGGCCAGCTACTTCAAAAATCAA 58.848 39.130 5.01 0.00 0.00 2.57
367 379 1.596934 CGGAGGCCAGCTACTTCAA 59.403 57.895 5.01 0.00 0.00 2.69
369 381 2.202946 GCGGAGGCCAGCTACTTC 60.203 66.667 5.01 0.00 0.00 3.01
384 396 0.103755 TCAGCTAAGATCCAGCAGCG 59.896 55.000 16.80 7.03 41.66 5.18
386 398 3.321396 TCAGATCAGCTAAGATCCAGCAG 59.679 47.826 16.80 10.37 44.32 4.24
507 523 3.939066 AGCTTACATACCAACAGTCACC 58.061 45.455 0.00 0.00 0.00 4.02
511 527 8.953313 GGTTAATTTAGCTTACATACCAACAGT 58.047 33.333 0.00 0.00 0.00 3.55
559 575 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
560 576 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
561 577 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
562 578 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
563 579 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
564 580 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
565 581 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
566 582 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
567 583 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
568 584 5.643777 ACTTGAGTCATCTATTTTGGAACGG 59.356 40.000 0.00 0.00 0.00 4.44
569 585 6.727824 ACTTGAGTCATCTATTTTGGAACG 57.272 37.500 0.00 0.00 0.00 3.95
570 586 8.352942 ACAAACTTGAGTCATCTATTTTGGAAC 58.647 33.333 9.57 0.00 36.13 3.62
571 587 8.463930 ACAAACTTGAGTCATCTATTTTGGAA 57.536 30.769 9.57 0.00 36.13 3.53
572 588 8.999431 GTACAAACTTGAGTCATCTATTTTGGA 58.001 33.333 9.57 0.96 36.13 3.53
573 589 9.003658 AGTACAAACTTGAGTCATCTATTTTGG 57.996 33.333 9.57 0.00 36.13 3.28
609 625 9.744468 GATGAACCAACTTTGTACTAATTTTGT 57.256 29.630 0.00 0.00 0.00 2.83
610 626 9.965824 AGATGAACCAACTTTGTACTAATTTTG 57.034 29.630 0.00 0.11 0.00 2.44
617 633 8.576442 CCAAAATAGATGAACCAACTTTGTACT 58.424 33.333 0.00 0.00 0.00 2.73
618 634 8.573035 TCCAAAATAGATGAACCAACTTTGTAC 58.427 33.333 0.00 0.00 0.00 2.90
619 635 8.698973 TCCAAAATAGATGAACCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
620 636 7.595819 TCCAAAATAGATGAACCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
621 637 7.114811 CGTTCCAAAATAGATGAACCAACTTTG 59.885 37.037 0.00 0.00 34.93 2.77
622 638 7.145323 CGTTCCAAAATAGATGAACCAACTTT 58.855 34.615 0.00 0.00 34.93 2.66
623 639 6.294508 CCGTTCCAAAATAGATGAACCAACTT 60.295 38.462 0.00 0.00 34.93 2.66
624 640 5.183140 CCGTTCCAAAATAGATGAACCAACT 59.817 40.000 0.00 0.00 34.93 3.16
625 641 5.182380 TCCGTTCCAAAATAGATGAACCAAC 59.818 40.000 0.00 0.00 34.93 3.77
626 642 5.317808 TCCGTTCCAAAATAGATGAACCAA 58.682 37.500 0.00 0.00 34.93 3.67
627 643 4.912586 TCCGTTCCAAAATAGATGAACCA 58.087 39.130 0.00 0.00 34.93 3.67
628 644 4.335594 CCTCCGTTCCAAAATAGATGAACC 59.664 45.833 0.00 0.00 34.93 3.62
629 645 4.335594 CCCTCCGTTCCAAAATAGATGAAC 59.664 45.833 0.00 0.00 35.03 3.18
630 646 4.226394 TCCCTCCGTTCCAAAATAGATGAA 59.774 41.667 0.00 0.00 0.00 2.57
631 647 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
632 648 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
633 649 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
634 650 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
635 651 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
636 652 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
637 653 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
638 654 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
639 655 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
640 656 1.897802 GAACTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 31.89 3.53
641 657 1.553706 GAACTACTCCCTCCGTTCCA 58.446 55.000 0.00 0.00 31.89 3.53
642 658 0.455005 CGAACTACTCCCTCCGTTCC 59.545 60.000 0.00 0.00 33.92 3.62
643 659 0.455005 CCGAACTACTCCCTCCGTTC 59.545 60.000 0.00 0.00 34.07 3.95
644 660 0.251519 ACCGAACTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
645 661 0.679321 GACCGAACTACTCCCTCCGT 60.679 60.000 0.00 0.00 0.00 4.69
646 662 1.382692 GGACCGAACTACTCCCTCCG 61.383 65.000 0.00 0.00 0.00 4.63
647 663 0.033306 AGGACCGAACTACTCCCTCC 60.033 60.000 0.00 0.00 0.00 4.30
648 664 1.104630 CAGGACCGAACTACTCCCTC 58.895 60.000 0.00 0.00 0.00 4.30
649 665 0.324460 CCAGGACCGAACTACTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
650 666 0.324091 TCCAGGACCGAACTACTCCC 60.324 60.000 0.00 0.00 0.00 4.30
651 667 1.553706 TTCCAGGACCGAACTACTCC 58.446 55.000 0.00 0.00 0.00 3.85
652 668 2.758979 TGATTCCAGGACCGAACTACTC 59.241 50.000 0.00 0.00 0.00 2.59
653 669 2.816411 TGATTCCAGGACCGAACTACT 58.184 47.619 0.00 0.00 0.00 2.57
660 676 1.683943 ATTGCATGATTCCAGGACCG 58.316 50.000 0.00 0.00 0.00 4.79
674 694 5.288232 GCTTAAACATTCATACGCAATTGCA 59.712 36.000 28.77 12.04 42.21 4.08
717 739 4.074970 AGCTGCAAAACTAGCACATAAGT 58.925 39.130 1.02 0.00 42.29 2.24
721 744 3.189287 GTGTAGCTGCAAAACTAGCACAT 59.811 43.478 5.91 0.00 42.29 3.21
726 749 2.157668 CACGGTGTAGCTGCAAAACTAG 59.842 50.000 5.91 0.00 0.00 2.57
735 758 1.079819 CCTCCACACGGTGTAGCTG 60.080 63.158 14.30 1.29 0.00 4.24
742 765 1.344065 TAACATCACCTCCACACGGT 58.656 50.000 0.00 0.00 34.38 4.83
755 778 7.164122 TCCTCAGAATGCCAGATATTAACATC 58.836 38.462 0.00 0.00 34.76 3.06
766 789 3.957497 ACTACTACTCCTCAGAATGCCAG 59.043 47.826 0.00 0.00 34.76 4.85
770 793 6.591834 CCACAAAACTACTACTCCTCAGAATG 59.408 42.308 0.00 0.00 37.54 2.67
782 805 9.589461 TGGAATTAAAATCCCACAAAACTACTA 57.411 29.630 7.89 0.00 36.04 1.82
785 808 7.234577 AGCTGGAATTAAAATCCCACAAAACTA 59.765 33.333 7.89 0.00 36.04 2.24
847 870 6.463614 GCCTATATCACTATCCATGATGTCCC 60.464 46.154 0.00 0.00 37.38 4.46
905 930 6.127196 GGAGGTCTGAAACATAGAATGTCTCT 60.127 42.308 0.00 0.00 44.07 3.10
906 931 6.045955 GGAGGTCTGAAACATAGAATGTCTC 58.954 44.000 0.00 0.00 44.07 3.36
907 932 5.723887 AGGAGGTCTGAAACATAGAATGTCT 59.276 40.000 0.00 0.00 44.07 3.41
973 999 2.095110 TGCTGCGGAATGAAGAACAATG 60.095 45.455 0.00 0.00 0.00 2.82
994 1020 2.233271 CCTGCTTGAGTCCATGTTTGT 58.767 47.619 0.00 0.00 0.00 2.83
1148 1177 3.873952 GACCCTCACAGACTTCATAATGC 59.126 47.826 0.00 0.00 0.00 3.56
1183 1218 2.028385 GCTTTTTCAGACGGAGGGAGTA 60.028 50.000 0.00 0.00 0.00 2.59
1184 1219 1.270893 GCTTTTTCAGACGGAGGGAGT 60.271 52.381 0.00 0.00 0.00 3.85
1185 1220 1.002544 AGCTTTTTCAGACGGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
1186 1221 1.056660 AGCTTTTTCAGACGGAGGGA 58.943 50.000 0.00 0.00 0.00 4.20
1187 1222 1.537202 CAAGCTTTTTCAGACGGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
1188 1223 2.222027 ACAAGCTTTTTCAGACGGAGG 58.778 47.619 0.00 0.00 0.00 4.30
1189 1224 3.304057 GGAACAAGCTTTTTCAGACGGAG 60.304 47.826 23.09 0.00 0.00 4.63
1190 1225 2.616842 GGAACAAGCTTTTTCAGACGGA 59.383 45.455 23.09 0.00 0.00 4.69
1191 1226 2.618709 AGGAACAAGCTTTTTCAGACGG 59.381 45.455 23.09 0.80 0.00 4.79
1192 1227 3.312421 TGAGGAACAAGCTTTTTCAGACG 59.688 43.478 23.09 1.50 0.00 4.18
1193 1228 4.900635 TGAGGAACAAGCTTTTTCAGAC 57.099 40.909 23.09 14.78 0.00 3.51
1194 1229 5.913137 TTTGAGGAACAAGCTTTTTCAGA 57.087 34.783 23.09 6.83 39.77 3.27
1195 1230 5.464389 CCATTTGAGGAACAAGCTTTTTCAG 59.536 40.000 23.09 3.61 39.77 3.02
1196 1231 5.128499 TCCATTTGAGGAACAAGCTTTTTCA 59.872 36.000 23.09 4.75 39.77 2.69
1197 1232 5.600696 TCCATTTGAGGAACAAGCTTTTTC 58.399 37.500 15.56 15.56 39.77 2.29
1198 1233 5.612725 TCCATTTGAGGAACAAGCTTTTT 57.387 34.783 0.00 0.00 39.77 1.94
1199 1234 5.070847 ACATCCATTTGAGGAACAAGCTTTT 59.929 36.000 0.00 0.00 41.92 2.27
1200 1235 4.590222 ACATCCATTTGAGGAACAAGCTTT 59.410 37.500 0.00 0.00 41.92 3.51
1201 1236 4.154942 ACATCCATTTGAGGAACAAGCTT 58.845 39.130 0.00 0.00 41.92 3.74
1202 1237 3.771216 ACATCCATTTGAGGAACAAGCT 58.229 40.909 0.00 0.00 41.92 3.74
1203 1238 5.591877 AGATACATCCATTTGAGGAACAAGC 59.408 40.000 0.00 0.00 41.92 4.01
1204 1239 7.041508 GCTAGATACATCCATTTGAGGAACAAG 60.042 40.741 0.00 0.00 41.92 3.16
1205 1240 6.767902 GCTAGATACATCCATTTGAGGAACAA 59.232 38.462 0.00 0.00 41.92 2.83
1206 1241 6.126796 TGCTAGATACATCCATTTGAGGAACA 60.127 38.462 0.00 0.00 41.92 3.18
1207 1242 6.203723 GTGCTAGATACATCCATTTGAGGAAC 59.796 42.308 0.00 0.00 41.92 3.62
1208 1243 6.291377 GTGCTAGATACATCCATTTGAGGAA 58.709 40.000 0.00 0.00 41.92 3.36
1209 1244 5.221722 GGTGCTAGATACATCCATTTGAGGA 60.222 44.000 0.00 0.00 43.01 3.71
1210 1245 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
1211 1246 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
1212 1247 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
1213 1248 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
1214 1249 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
1215 1250 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
1216 1251 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
1217 1252 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
1218 1253 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
1230 1265 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
1231 1266 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
1232 1267 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
1233 1268 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
1234 1269 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
1235 1270 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
1236 1271 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
1237 1272 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
1238 1273 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
1239 1274 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
1240 1275 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
1241 1276 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
1242 1277 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
1243 1278 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
1244 1279 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
1245 1280 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
1246 1281 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1247 1282 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
1248 1283 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
1249 1284 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
1250 1285 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1251 1286 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
1252 1287 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
1253 1288 4.341366 AAAAAGCTTGTCCCTCAAATGG 57.659 40.909 0.00 0.00 35.48 3.16
1271 1306 4.733077 TTGTACTCCCTCCATCCAAAAA 57.267 40.909 0.00 0.00 0.00 1.94
1272 1307 4.569653 CCATTGTACTCCCTCCATCCAAAA 60.570 45.833 0.00 0.00 0.00 2.44
1273 1308 3.053693 CCATTGTACTCCCTCCATCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
1274 1309 2.509548 CCATTGTACTCCCTCCATCCAA 59.490 50.000 0.00 0.00 0.00 3.53
1275 1310 2.126882 CCATTGTACTCCCTCCATCCA 58.873 52.381 0.00 0.00 0.00 3.41
1276 1311 2.408565 TCCATTGTACTCCCTCCATCC 58.591 52.381 0.00 0.00 0.00 3.51
1277 1312 4.841246 AGTATCCATTGTACTCCCTCCATC 59.159 45.833 0.00 0.00 0.00 3.51
1278 1313 4.832492 AGTATCCATTGTACTCCCTCCAT 58.168 43.478 0.00 0.00 0.00 3.41
1279 1314 4.280789 AGTATCCATTGTACTCCCTCCA 57.719 45.455 0.00 0.00 0.00 3.86
1280 1315 5.632034 AAAGTATCCATTGTACTCCCTCC 57.368 43.478 0.00 0.00 31.44 4.30
1361 1397 7.275183 AGCAGACAAGACATAGCAAATACATA 58.725 34.615 0.00 0.00 0.00 2.29
1478 1659 3.058914 CAGGCAAAGAAGTTACAGAACGG 60.059 47.826 0.00 0.00 40.76 4.44
1510 1691 6.067217 ACATGGCCTATCAAGTAAGAAAGT 57.933 37.500 3.32 0.00 0.00 2.66
1621 1816 8.915036 AGAAGTTCAGATATTTCTATGGTACGT 58.085 33.333 5.50 0.00 0.00 3.57
1729 2077 1.696832 GCCTCGCCGTTTTAGCTGAG 61.697 60.000 0.00 0.00 33.56 3.35
1874 2224 6.994496 TGATCAGAAGCCCTGTTATTATCTTG 59.006 38.462 0.00 0.00 43.38 3.02
1977 2327 2.621338 TGAGCTGCTCAATCTTTACGG 58.379 47.619 28.72 0.00 37.57 4.02
2133 2483 7.124901 TGGCAAAAGCCATTTCTTATAATACCA 59.875 33.333 4.86 0.00 34.56 3.25
2277 2627 3.953542 ACAAGGGAGAGACAAAAAGGT 57.046 42.857 0.00 0.00 0.00 3.50
2414 2765 5.327091 CATCTGAAGCACTCCATTTTTACG 58.673 41.667 0.00 0.00 0.00 3.18
2441 2792 9.887406 CTAAAATTCATGCATTCAAAAGCTTTT 57.113 25.926 18.74 18.74 0.00 2.27
2576 2927 5.101628 CCAAACAACCATCCAAACATATCG 58.898 41.667 0.00 0.00 0.00 2.92
2607 3006 6.982160 AAAGAAGGCATGCCAAATATATGA 57.018 33.333 37.18 0.00 38.92 2.15
2657 3056 6.068670 GTGTGGGGTGGCTATTTAGATATTT 58.931 40.000 0.00 0.00 0.00 1.40
2677 3076 2.668185 TTAGTGTGGGGTGGCGTGTG 62.668 60.000 0.00 0.00 0.00 3.82
2678 3077 2.445119 TTAGTGTGGGGTGGCGTGT 61.445 57.895 0.00 0.00 0.00 4.49
2679 3078 1.964373 GTTAGTGTGGGGTGGCGTG 60.964 63.158 0.00 0.00 0.00 5.34
2680 3079 1.774894 ATGTTAGTGTGGGGTGGCGT 61.775 55.000 0.00 0.00 0.00 5.68
2681 3080 0.250793 TATGTTAGTGTGGGGTGGCG 59.749 55.000 0.00 0.00 0.00 5.69
2703 3102 5.288804 GTGGTACATTTGCATGTTGAAAGT 58.711 37.500 0.00 0.00 41.16 2.66
2706 3105 3.894427 AGGTGGTACATTTGCATGTTGAA 59.106 39.130 0.00 0.00 41.16 2.69
2744 3143 6.954232 AGACAAATATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2745 3144 7.625828 AAGACAAATATTTAGGAACGAAGGG 57.374 36.000 0.00 0.00 0.00 3.95
2746 3145 8.947115 AGAAAGACAAATATTTAGGAACGAAGG 58.053 33.333 0.00 0.00 0.00 3.46
2762 3161 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2763 3162 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2764 3163 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2765 3164 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2766 3165 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2767 3166 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2768 3167 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2769 3168 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2770 3169 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2771 3170 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2772 3171 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2773 3172 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2774 3173 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2775 3174 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2776 3175 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2777 3176 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2778 3177 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2779 3178 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2780 3179 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2781 3180 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2782 3181 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2783 3182 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2784 3183 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2785 3184 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2786 3185 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2787 3186 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2788 3187 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2789 3188 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2790 3189 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2791 3190 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2792 3191 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2793 3192 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2794 3193 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2795 3194 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2796 3195 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2797 3196 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2798 3197 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2799 3198 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2800 3199 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2873 3272 9.350951 CCCTCCGTTCCTAAATATTTATCTTTT 57.649 33.333 8.34 0.00 0.00 2.27
2874 3273 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
2875 3274 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
2876 3275 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
2877 3276 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
2878 3277 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
2879 3278 7.564660 TGTACTCCCTCCGTTCCTAAATATTTA 59.435 37.037 7.66 7.66 0.00 1.40
2880 3279 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2881 3280 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
2882 3281 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2883 3282 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2884 3283 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2885 3284 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2886 3285 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2887 3286 2.242965 TCATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
2888 3287 1.006758 TCATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
2889 3288 1.409427 CTCATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
2890 3289 2.376109 TCTCATGTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
2891 3290 2.526888 TCTCATGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
2892 3291 2.526888 TTCTCATGTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
2893 3292 3.887621 TTTTCTCATGTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
2894 3293 4.019231 ACCTTTTTCTCATGTACTCCCTCC 60.019 45.833 0.00 0.00 0.00 4.30
2895 3294 5.167303 ACCTTTTTCTCATGTACTCCCTC 57.833 43.478 0.00 0.00 0.00 4.30
2896 3295 4.597507 TGACCTTTTTCTCATGTACTCCCT 59.402 41.667 0.00 0.00 0.00 4.20
2897 3296 4.695928 GTGACCTTTTTCTCATGTACTCCC 59.304 45.833 0.00 0.00 0.00 4.30
2898 3297 4.695928 GGTGACCTTTTTCTCATGTACTCC 59.304 45.833 0.00 0.00 0.00 3.85
2899 3298 5.552178 AGGTGACCTTTTTCTCATGTACTC 58.448 41.667 0.00 0.00 0.00 2.59
2900 3299 5.568620 AGGTGACCTTTTTCTCATGTACT 57.431 39.130 0.00 0.00 0.00 2.73
2901 3300 5.763204 TCAAGGTGACCTTTTTCTCATGTAC 59.237 40.000 15.48 0.00 41.69 2.90
2902 3301 5.935945 TCAAGGTGACCTTTTTCTCATGTA 58.064 37.500 15.48 0.00 41.69 2.29
2903 3302 4.792068 TCAAGGTGACCTTTTTCTCATGT 58.208 39.130 15.48 0.00 41.69 3.21
2904 3303 5.972107 ATCAAGGTGACCTTTTTCTCATG 57.028 39.130 15.48 1.31 41.69 3.07
2905 3304 6.096001 GCATATCAAGGTGACCTTTTTCTCAT 59.904 38.462 15.48 2.95 41.69 2.90
2906 3305 5.415701 GCATATCAAGGTGACCTTTTTCTCA 59.584 40.000 15.48 0.00 41.69 3.27
2907 3306 5.415701 TGCATATCAAGGTGACCTTTTTCTC 59.584 40.000 15.48 3.45 41.69 2.87
2908 3307 5.324409 TGCATATCAAGGTGACCTTTTTCT 58.676 37.500 15.48 2.19 41.69 2.52
2909 3308 5.643379 TGCATATCAAGGTGACCTTTTTC 57.357 39.130 15.48 1.86 41.69 2.29
2910 3309 6.183360 TGTTTGCATATCAAGGTGACCTTTTT 60.183 34.615 15.48 7.58 41.69 1.94
2911 3310 5.304101 TGTTTGCATATCAAGGTGACCTTTT 59.696 36.000 15.48 7.96 41.69 2.27
2912 3311 4.832266 TGTTTGCATATCAAGGTGACCTTT 59.168 37.500 15.48 3.71 41.69 3.11
2913 3312 4.406456 TGTTTGCATATCAAGGTGACCTT 58.594 39.130 11.91 11.91 45.88 3.50
2914 3313 4.032960 TGTTTGCATATCAAGGTGACCT 57.967 40.909 0.00 0.00 35.84 3.85
2915 3314 4.675510 CATGTTTGCATATCAAGGTGACC 58.324 43.478 0.00 0.00 35.84 4.02
2933 3332 9.918630 GCATAATAGGATGAAAATTAAGCATGT 57.081 29.630 0.00 0.00 32.72 3.21
2934 3333 9.917129 TGCATAATAGGATGAAAATTAAGCATG 57.083 29.630 0.00 0.00 35.84 4.06
3043 3442 8.193953 AGGAGTGTCAATGGTATTTGATTTTT 57.806 30.769 0.00 0.00 37.88 1.94
3044 3443 7.781324 AGGAGTGTCAATGGTATTTGATTTT 57.219 32.000 0.00 0.00 37.88 1.82
3045 3444 8.877864 TTAGGAGTGTCAATGGTATTTGATTT 57.122 30.769 0.00 0.00 37.88 2.17
3046 3445 8.877864 TTTAGGAGTGTCAATGGTATTTGATT 57.122 30.769 0.00 0.00 37.88 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.