Multiple sequence alignment - TraesCS2D01G434500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G434500 chr2D 100.000 4237 0 0 1 4237 545851994 545847758 0.000000e+00 7825
1 TraesCS2D01G434500 chr2B 87.272 4384 314 115 1 4237 652410593 652406307 0.000000e+00 4780
2 TraesCS2D01G434500 chr2A 95.133 2753 91 29 1512 4237 689205271 689208007 0.000000e+00 4301
3 TraesCS2D01G434500 chr2A 86.857 1050 72 23 1 992 689203197 689204238 0.000000e+00 1114
4 TraesCS2D01G434500 chr2A 90.801 587 23 8 951 1521 689204240 689204811 0.000000e+00 756
5 TraesCS2D01G434500 chr6D 98.795 83 1 0 2694 2776 418481737 418481819 9.490000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G434500 chr2D 545847758 545851994 4236 True 7825 7825 100.000000 1 4237 1 chr2D.!!$R1 4236
1 TraesCS2D01G434500 chr2B 652406307 652410593 4286 True 4780 4780 87.272000 1 4237 1 chr2B.!!$R1 4236
2 TraesCS2D01G434500 chr2A 689203197 689208007 4810 False 2057 4301 90.930333 1 4237 3 chr2A.!!$F1 4236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1035 0.179056 AAACGTGTGGTGGAGACAGG 60.179 55.000 0.0 0.0 44.46 4.00 F
1192 1358 1.209261 TGCTTCCATATTCCGACTGCA 59.791 47.619 0.0 0.0 0.00 4.41 F
1952 2610 1.204941 ACATACGACAAGGTCTGCTCC 59.795 52.381 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2558 1.131638 TCAGTGCCAAGGTCAAGAGT 58.868 50.000 0.00 0.0 0.00 3.24 R
2217 2875 1.600413 GCAGAAAGCCCACTGTTTTCG 60.600 52.381 0.00 0.0 45.66 3.46 R
3775 4465 0.320697 GTCGTTCCAAGTAGGCCAGT 59.679 55.000 5.01 0.0 37.29 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.429130 AGGAAGCCTTATTTAGTAGCACAC 58.571 41.667 0.00 0.00 0.00 3.82
44 46 5.404968 CACACGGTGCATCAATTTGTTAATT 59.595 36.000 8.30 0.00 34.29 1.40
63 67 2.543777 TAGTGTTGGTTGCAGTCCTC 57.456 50.000 10.56 5.60 0.00 3.71
107 111 5.856156 CTGATCCTTCAGTTATGATCTGCT 58.144 41.667 0.00 0.00 43.73 4.24
122 126 4.880120 TGATCTGCTTGGCTTTCTATTCAG 59.120 41.667 0.00 0.00 0.00 3.02
135 139 6.831868 GCTTTCTATTCAGGGGTTTATACCAA 59.168 38.462 4.65 0.00 46.96 3.67
136 140 7.505923 GCTTTCTATTCAGGGGTTTATACCAAT 59.494 37.037 4.65 0.00 46.96 3.16
169 173 3.069586 TCATATGCCTCCTGAACCGTTAG 59.930 47.826 0.00 0.00 0.00 2.34
192 206 7.054491 AGTTACAACTGCAATTGATCCTTTT 57.946 32.000 15.88 0.00 37.98 2.27
198 212 5.324409 ACTGCAATTGATCCTTTTAGACCA 58.676 37.500 10.34 0.00 0.00 4.02
199 213 5.774690 ACTGCAATTGATCCTTTTAGACCAA 59.225 36.000 10.34 0.00 0.00 3.67
204 218 7.657354 GCAATTGATCCTTTTAGACCAAAACTT 59.343 33.333 10.34 0.00 32.65 2.66
243 261 6.638610 ACATACTTCTGTTCTCCATCAAGAG 58.361 40.000 0.00 0.00 35.04 2.85
250 268 4.654915 TGTTCTCCATCAAGAGCATTTCA 58.345 39.130 0.00 0.00 32.38 2.69
251 269 5.258841 TGTTCTCCATCAAGAGCATTTCAT 58.741 37.500 0.00 0.00 32.38 2.57
253 271 6.541278 TGTTCTCCATCAAGAGCATTTCATAG 59.459 38.462 0.00 0.00 32.38 2.23
255 273 6.522946 TCTCCATCAAGAGCATTTCATAGAG 58.477 40.000 0.00 0.00 33.66 2.43
256 274 6.099413 TCTCCATCAAGAGCATTTCATAGAGT 59.901 38.462 0.00 0.00 33.66 3.24
273 293 7.629157 TCATAGAGTGTGATAATTTTGTCCCA 58.371 34.615 0.00 0.00 0.00 4.37
296 316 1.477553 TTTCATCATGCTGCCCTTCC 58.522 50.000 0.00 0.00 0.00 3.46
379 399 4.154347 GAGCCGGTGCCTCAGAGG 62.154 72.222 12.81 12.81 38.69 3.69
456 476 2.046604 GGCCTACCAACGGTGACC 60.047 66.667 0.00 0.00 36.19 4.02
457 477 2.046604 GCCTACCAACGGTGACCC 60.047 66.667 0.00 0.00 36.19 4.46
467 487 4.876652 GGTGACCCGTCGTTCTAC 57.123 61.111 0.00 0.00 0.00 2.59
468 488 2.261215 GGTGACCCGTCGTTCTACT 58.739 57.895 0.00 0.00 0.00 2.57
481 509 2.124570 CTACTGCAAGCGCCCCAT 60.125 61.111 2.29 0.00 37.60 4.00
493 522 1.968540 GCCCCATTGCTATCGCTCC 60.969 63.158 0.00 0.00 36.97 4.70
504 533 1.476085 CTATCGCTCCTGCCCTAGATG 59.524 57.143 0.00 0.00 35.36 2.90
509 538 0.972883 CTCCTGCCCTAGATGTAGCC 59.027 60.000 0.00 0.00 0.00 3.93
536 565 4.794648 CGCCCGAAATGCCCCTCA 62.795 66.667 0.00 0.00 0.00 3.86
718 776 2.121506 TGAACCCTCCCTGCCCTT 60.122 61.111 0.00 0.00 0.00 3.95
743 805 0.530870 GCTCCATTCGCCCTCTGTAC 60.531 60.000 0.00 0.00 0.00 2.90
750 812 1.140375 CGCCCTCTGTACGTAACCC 59.860 63.158 0.00 0.00 0.00 4.11
797 880 3.366781 GCAGGGAGCTCATTTTCAGAAAC 60.367 47.826 17.19 0.00 41.15 2.78
799 882 2.162408 GGGAGCTCATTTTCAGAAACCG 59.838 50.000 17.19 0.00 0.00 4.44
835 918 2.409055 GCACGAGCCATGATGCCAA 61.409 57.895 0.00 0.00 33.58 4.52
850 936 2.671070 CAATGACCACGGGAGGCT 59.329 61.111 0.00 0.00 0.00 4.58
935 1029 3.820590 CAGCAAACGTGTGGTGGA 58.179 55.556 26.72 0.00 42.11 4.02
938 1032 0.814010 AGCAAACGTGTGGTGGAGAC 60.814 55.000 10.19 0.00 0.00 3.36
939 1033 1.092921 GCAAACGTGTGGTGGAGACA 61.093 55.000 8.05 0.00 38.70 3.41
941 1035 0.179056 AAACGTGTGGTGGAGACAGG 60.179 55.000 0.00 0.00 44.46 4.00
1180 1346 2.536365 CACACGTACGTATGCTTCCAT 58.464 47.619 22.34 0.00 35.44 3.41
1192 1358 1.209261 TGCTTCCATATTCCGACTGCA 59.791 47.619 0.00 0.00 0.00 4.41
1223 1389 4.973168 ACTCTGATGCAAGTTAACAGGAA 58.027 39.130 8.61 0.00 0.00 3.36
1224 1390 5.564550 ACTCTGATGCAAGTTAACAGGAAT 58.435 37.500 8.61 0.00 0.00 3.01
1225 1391 5.413833 ACTCTGATGCAAGTTAACAGGAATG 59.586 40.000 8.61 0.25 0.00 2.67
1241 1407 2.420372 GGAATGTTTCTCGCTTTCTCCC 59.580 50.000 0.00 0.00 0.00 4.30
1336 1502 4.821589 CGGCTCCGCAGAAGGGAC 62.822 72.222 0.00 0.00 0.00 4.46
1506 1676 6.433404 GCATGATGGAAGAATGATGATAACCT 59.567 38.462 0.00 0.00 0.00 3.50
1517 2156 2.715749 TGATAACCTGCACCTCCATG 57.284 50.000 0.00 0.00 0.00 3.66
1521 2160 2.124403 CCTGCACCTCCATGGCTC 60.124 66.667 6.96 0.00 40.22 4.70
1606 2247 4.284550 TTCACAGGGGTGGCTGCC 62.285 66.667 12.87 12.87 45.32 4.85
1692 2333 6.165659 TCTTTTCGCTTCAAATGCTAGTAC 57.834 37.500 0.00 0.00 0.00 2.73
1693 2334 5.699001 TCTTTTCGCTTCAAATGCTAGTACA 59.301 36.000 0.00 0.00 0.00 2.90
1697 2338 5.902681 TCGCTTCAAATGCTAGTACATACT 58.097 37.500 0.00 0.00 40.24 2.12
1698 2339 6.338146 TCGCTTCAAATGCTAGTACATACTT 58.662 36.000 0.00 0.00 37.73 2.24
1705 2346 9.653287 TCAAATGCTAGTACATACTTATATGCC 57.347 33.333 0.00 0.00 41.83 4.40
1734 2375 1.577328 CCTTCCGCGTTGATGCACTT 61.577 55.000 4.92 0.00 34.15 3.16
1818 2473 4.507710 ACTGCACATTATGTACACTCAGG 58.492 43.478 0.00 0.00 0.00 3.86
1819 2474 4.222810 ACTGCACATTATGTACACTCAGGA 59.777 41.667 0.00 0.00 0.00 3.86
1901 2558 1.300963 GCCAGAGCTTGTCCCATCA 59.699 57.895 0.00 0.00 35.50 3.07
1952 2610 1.204941 ACATACGACAAGGTCTGCTCC 59.795 52.381 0.00 0.00 0.00 4.70
2015 2673 1.866015 ACTGATGGTGCTACTGGCTA 58.134 50.000 0.00 0.00 42.39 3.93
2217 2875 2.716217 AGTGCAGAAATAAGCAGACCC 58.284 47.619 0.00 0.00 42.14 4.46
2339 2997 6.604171 TGATCCAAATAGCAGGTGTGATAAT 58.396 36.000 0.00 0.00 0.00 1.28
2375 3033 5.818136 TTAGCAGTATGATCTTTGTTGGC 57.182 39.130 0.00 0.00 39.69 4.52
2405 3071 9.819267 GCTGTATACTCAAATCTACTTTTACCT 57.181 33.333 4.17 0.00 0.00 3.08
2526 3192 1.737793 GTTCAAGTGGGCAGGTATTCG 59.262 52.381 0.00 0.00 0.00 3.34
2533 3199 2.093869 GTGGGCAGGTATTCGTTCACTA 60.094 50.000 0.00 0.00 0.00 2.74
2563 3229 2.996621 CGGAGTCTGTCAGTTCATTTCC 59.003 50.000 0.00 0.00 0.00 3.13
2565 3231 4.646572 GGAGTCTGTCAGTTCATTTCCTT 58.353 43.478 0.00 0.00 0.00 3.36
2768 3448 1.614413 GTCCTCGTCAGGTCACTTCTT 59.386 52.381 0.00 0.00 41.28 2.52
2792 3472 7.539712 TCTCATTGATCGTTTCATAACTTCC 57.460 36.000 0.00 0.00 33.34 3.46
2797 3480 6.494893 TGATCGTTTCATAACTTCCTTTGG 57.505 37.500 0.00 0.00 31.89 3.28
2902 3585 2.283676 TCGGCCTTCTTCGGACCT 60.284 61.111 0.00 0.00 0.00 3.85
3123 3806 5.184711 TGCTTCTGAATGTGTATGTATGCA 58.815 37.500 0.00 0.00 0.00 3.96
3158 3841 2.031163 GCGGTCACCAAGCTGAGT 59.969 61.111 0.00 0.00 0.00 3.41
3562 4245 7.498239 AGTTGTATGTTGTCTATCGACTAGCTA 59.502 37.037 0.00 0.00 40.86 3.32
3775 4465 2.042261 GACCTAGGGGGCCTTGGA 59.958 66.667 14.81 0.00 46.83 3.53
3830 4527 4.435970 CCCCAGGGGCCGTAAACC 62.436 72.222 13.35 0.00 35.35 3.27
3831 4528 3.653078 CCCAGGGGCCGTAAACCA 61.653 66.667 0.00 0.00 0.00 3.67
3832 4529 2.680965 CCAGGGGCCGTAAACCAT 59.319 61.111 0.00 0.00 0.00 3.55
3833 4530 1.000145 CCAGGGGCCGTAAACCATT 60.000 57.895 0.00 0.00 0.00 3.16
3834 4531 0.256464 CCAGGGGCCGTAAACCATTA 59.744 55.000 0.00 0.00 0.00 1.90
3911 4608 3.137446 ACAATGTCTTCTCAGCTTGCT 57.863 42.857 0.00 0.00 0.00 3.91
3969 4666 1.880027 GAATGTTTGTTGCCGACCTCT 59.120 47.619 0.00 0.00 0.00 3.69
3973 4670 3.071479 TGTTTGTTGCCGACCTCTTATC 58.929 45.455 0.00 0.00 0.00 1.75
4196 4899 7.010645 TGGACTTTTTCCTTTTAAAATTCGTGC 59.989 33.333 0.09 0.00 46.10 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.308866 CACCGTGTGCTACTAAATAAGGC 59.691 47.826 0.00 0.00 0.00 4.35
24 25 6.806249 ACACTAATTAACAAATTGATGCACCG 59.194 34.615 0.00 0.00 0.00 4.94
32 34 8.136057 TGCAACCAACACTAATTAACAAATTG 57.864 30.769 0.00 0.00 0.00 2.32
38 40 5.240844 AGGACTGCAACCAACACTAATTAAC 59.759 40.000 11.38 0.00 0.00 2.01
44 46 1.765904 TGAGGACTGCAACCAACACTA 59.234 47.619 11.38 0.00 0.00 2.74
63 67 6.985117 TCAGTCTTTCCAAAAGGATCATTTG 58.015 36.000 6.05 10.61 37.48 2.32
95 99 6.874288 ATAGAAAGCCAAGCAGATCATAAC 57.126 37.500 0.00 0.00 0.00 1.89
97 101 6.594744 TGAATAGAAAGCCAAGCAGATCATA 58.405 36.000 0.00 0.00 0.00 2.15
103 107 2.686915 CCCTGAATAGAAAGCCAAGCAG 59.313 50.000 0.00 0.00 0.00 4.24
107 111 3.825908 AACCCCTGAATAGAAAGCCAA 57.174 42.857 0.00 0.00 0.00 4.52
122 126 6.838382 ACAGTCTGATATTGGTATAAACCCC 58.162 40.000 6.91 0.00 46.16 4.95
135 139 5.784390 AGGAGGCATATGAACAGTCTGATAT 59.216 40.000 6.97 0.00 0.00 1.63
136 140 5.011431 CAGGAGGCATATGAACAGTCTGATA 59.989 44.000 6.97 0.00 0.00 2.15
137 141 3.972638 AGGAGGCATATGAACAGTCTGAT 59.027 43.478 6.97 0.00 0.00 2.90
169 173 8.296713 TCTAAAAGGATCAATTGCAGTTGTAAC 58.703 33.333 19.91 11.67 0.00 2.50
209 223 9.036980 GGAGAACAGAAGTATGTATATGGGTAT 57.963 37.037 0.00 0.00 31.70 2.73
213 227 8.588472 TGATGGAGAACAGAAGTATGTATATGG 58.412 37.037 0.00 0.00 31.70 2.74
219 233 6.611613 TCTTGATGGAGAACAGAAGTATGT 57.388 37.500 0.00 0.00 33.96 2.29
243 261 9.793252 ACAAAATTATCACACTCTATGAAATGC 57.207 29.630 0.00 0.00 0.00 3.56
250 268 7.861629 TCTGGGACAAAATTATCACACTCTAT 58.138 34.615 0.00 0.00 38.70 1.98
251 269 7.252612 TCTGGGACAAAATTATCACACTCTA 57.747 36.000 0.00 0.00 38.70 2.43
253 271 7.396540 AATCTGGGACAAAATTATCACACTC 57.603 36.000 0.00 0.00 38.70 3.51
255 273 8.087750 TGAAAATCTGGGACAAAATTATCACAC 58.912 33.333 0.00 0.00 38.70 3.82
256 274 8.187913 TGAAAATCTGGGACAAAATTATCACA 57.812 30.769 0.00 0.00 38.70 3.58
273 293 3.028094 AGGGCAGCATGATGAAAATCT 57.972 42.857 16.67 0.79 39.69 2.40
296 316 2.483877 TCACAAATAACTCGGCTGCAAG 59.516 45.455 0.50 0.41 0.00 4.01
379 399 0.179108 AACGCGGTCTATCTTGAGCC 60.179 55.000 12.47 0.00 0.00 4.70
456 476 1.674611 CGCTTGCAGTAGAACGACGG 61.675 60.000 0.00 0.00 0.00 4.79
457 477 1.696644 CGCTTGCAGTAGAACGACG 59.303 57.895 0.00 0.00 0.00 5.12
461 481 2.399356 GGGGCGCTTGCAGTAGAAC 61.399 63.158 7.64 0.00 41.71 3.01
462 482 2.046314 GGGGCGCTTGCAGTAGAA 60.046 61.111 7.64 0.00 41.71 2.10
463 483 2.196997 AATGGGGCGCTTGCAGTAGA 62.197 55.000 7.64 0.00 41.71 2.59
464 484 1.750399 AATGGGGCGCTTGCAGTAG 60.750 57.895 7.64 0.00 41.71 2.57
466 486 3.376078 CAATGGGGCGCTTGCAGT 61.376 61.111 7.64 0.00 41.71 4.40
467 487 4.807039 GCAATGGGGCGCTTGCAG 62.807 66.667 22.63 4.85 45.50 4.41
493 522 1.069823 CAGTGGCTACATCTAGGGCAG 59.930 57.143 2.02 0.00 36.26 4.85
536 565 2.096496 GCTACAATGCAGCAAAGACGAT 59.904 45.455 0.00 0.00 38.93 3.73
718 776 0.038166 AGGGCGAATGGAGCTGAAAA 59.962 50.000 0.00 0.00 34.52 2.29
743 805 1.356624 CTACCTACGCCGGGTTACG 59.643 63.158 2.18 0.00 43.80 3.18
750 812 1.008767 GCTGCTACTACCTACGCCG 60.009 63.158 0.00 0.00 0.00 6.46
797 880 1.468224 CGAGAACACAGAGATGGACGG 60.468 57.143 0.00 0.00 0.00 4.79
799 882 1.067565 TGCGAGAACACAGAGATGGAC 60.068 52.381 0.00 0.00 0.00 4.02
835 918 3.402681 CCAGCCTCCCGTGGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
850 936 0.687920 TCCACATTGTTACCGAGCCA 59.312 50.000 0.00 0.00 0.00 4.75
877 968 3.136123 TAGTTCCTCCGCGTCCCG 61.136 66.667 4.92 0.00 0.00 5.14
935 1029 1.194781 ACGTGCATTCTCCCCTGTCT 61.195 55.000 0.00 0.00 0.00 3.41
938 1032 2.401766 GCACGTGCATTCTCCCCTG 61.402 63.158 34.52 0.00 41.59 4.45
939 1033 2.045926 GCACGTGCATTCTCCCCT 60.046 61.111 34.52 0.00 41.59 4.79
962 1104 1.539065 CGGATAAGGCAGCGAATCACT 60.539 52.381 0.00 0.00 0.00 3.41
1168 1334 3.675225 CAGTCGGAATATGGAAGCATACG 59.325 47.826 0.00 0.00 0.00 3.06
1192 1358 3.072184 ACTTGCATCAGAGTTGGAGACTT 59.928 43.478 0.00 0.00 39.19 3.01
1200 1366 4.973168 TCCTGTTAACTTGCATCAGAGTT 58.027 39.130 7.22 6.73 39.32 3.01
1201 1367 4.623932 TCCTGTTAACTTGCATCAGAGT 57.376 40.909 7.22 0.00 0.00 3.24
1223 1389 2.704572 CAGGGAGAAAGCGAGAAACAT 58.295 47.619 0.00 0.00 0.00 2.71
1224 1390 1.878102 GCAGGGAGAAAGCGAGAAACA 60.878 52.381 0.00 0.00 0.00 2.83
1225 1391 0.799393 GCAGGGAGAAAGCGAGAAAC 59.201 55.000 0.00 0.00 0.00 2.78
1241 1407 0.803117 CAGCACACCTGAATCTGCAG 59.197 55.000 7.63 7.63 44.64 4.41
1336 1502 3.764160 GAAGCAGCCCCCGATCAGG 62.764 68.421 0.00 0.00 40.63 3.86
1506 1676 1.141657 GATAAGAGCCATGGAGGTGCA 59.858 52.381 18.40 0.00 40.61 4.57
1545 2184 1.002900 CCTAACACACCGCACAAACAG 60.003 52.381 0.00 0.00 0.00 3.16
1551 2192 1.127951 CGATTTCCTAACACACCGCAC 59.872 52.381 0.00 0.00 0.00 5.34
1606 2247 3.699955 TTCGATCAGGTCAGCCGCG 62.700 63.158 0.00 0.00 40.50 6.46
1692 2333 9.950496 AAGGTCATTAAGAGGCATATAAGTATG 57.050 33.333 0.00 0.00 40.56 2.39
1697 2338 6.464222 CGGAAGGTCATTAAGAGGCATATAA 58.536 40.000 0.00 0.00 0.00 0.98
1698 2339 5.568825 GCGGAAGGTCATTAAGAGGCATATA 60.569 44.000 0.00 0.00 0.00 0.86
1705 2346 2.295253 ACGCGGAAGGTCATTAAGAG 57.705 50.000 12.47 0.00 0.00 2.85
1719 2360 2.082366 GCAAAGTGCATCAACGCGG 61.082 57.895 12.47 0.00 44.26 6.46
1756 2398 2.233271 CTGTGAGGGTGCTTTTGATGT 58.767 47.619 0.00 0.00 0.00 3.06
1818 2473 3.997021 AGACAGGTGAAATTGATGACGTC 59.003 43.478 9.11 9.11 0.00 4.34
1819 2474 3.748048 CAGACAGGTGAAATTGATGACGT 59.252 43.478 0.00 0.00 0.00 4.34
1901 2558 1.131638 TCAGTGCCAAGGTCAAGAGT 58.868 50.000 0.00 0.00 0.00 3.24
1952 2610 4.646492 ACTAATTGCCAGAAGCCATTTAGG 59.354 41.667 0.00 0.00 42.71 2.69
2015 2673 5.560724 TGCCTGCAGAAGAGTTAAGTTAAT 58.439 37.500 17.39 0.00 0.00 1.40
2217 2875 1.600413 GCAGAAAGCCCACTGTTTTCG 60.600 52.381 0.00 0.00 45.66 3.46
2375 3033 8.709386 AAAGTAGATTTGAGTATACAGCAGTG 57.291 34.615 5.50 0.00 0.00 3.66
2526 3192 5.493366 GACTCCGGTCTGACGTAGTGAAC 62.493 56.522 0.00 0.00 39.39 3.18
2563 3229 8.560374 GCAAACTAGGCCTATATTACAGAAAAG 58.440 37.037 14.30 0.23 0.00 2.27
2565 3231 7.802117 AGCAAACTAGGCCTATATTACAGAAA 58.198 34.615 14.30 0.00 0.00 2.52
2768 3448 7.331026 AGGAAGTTATGAAACGATCAATGAGA 58.669 34.615 0.00 0.00 42.54 3.27
2902 3585 3.535629 CTCCGTGGCAGCTTGGTCA 62.536 63.158 0.00 0.00 0.00 4.02
3123 3806 1.674817 CGCGGTTATCAGGTCAACCTT 60.675 52.381 0.00 0.00 46.09 3.50
3158 3841 3.850173 AGTTTATCTTCTGGCCCAGGTAA 59.150 43.478 11.68 0.00 31.51 2.85
3562 4245 5.368989 GGGCCGCAATATCTTATATAAGCT 58.631 41.667 16.37 10.35 33.40 3.74
3628 4318 1.066430 ACCGACATAGCCGACAATGTT 60.066 47.619 0.00 0.00 36.48 2.71
3629 4319 0.535335 ACCGACATAGCCGACAATGT 59.465 50.000 0.00 0.00 39.00 2.71
3775 4465 0.320697 GTCGTTCCAAGTAGGCCAGT 59.679 55.000 5.01 0.00 37.29 4.00
3823 4513 3.832615 AGGGGCTACTAATGGTTTACG 57.167 47.619 0.00 0.00 0.00 3.18
3829 4526 3.458487 ACCAGTTTAGGGGCTACTAATGG 59.542 47.826 14.75 14.75 38.31 3.16
3830 4527 4.444449 GGACCAGTTTAGGGGCTACTAATG 60.444 50.000 3.70 1.47 33.31 1.90
3831 4528 3.715315 GGACCAGTTTAGGGGCTACTAAT 59.285 47.826 3.70 0.00 33.31 1.73
3832 4529 3.109928 GGACCAGTTTAGGGGCTACTAA 58.890 50.000 0.00 0.00 32.41 2.24
3833 4530 2.316982 AGGACCAGTTTAGGGGCTACTA 59.683 50.000 0.00 0.00 32.41 1.82
3834 4531 1.080666 AGGACCAGTTTAGGGGCTACT 59.919 52.381 0.00 0.00 32.41 2.57
3911 4608 2.951642 CAAAGAACCAGCTTCAACCTCA 59.048 45.455 0.00 0.00 0.00 3.86
3969 4666 2.792947 GGGAGCAGACCGGCGATAA 61.793 63.158 9.30 0.00 39.27 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.