Multiple sequence alignment - TraesCS2D01G434200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G434200 chr2D 100.000 4208 0 0 1 4208 545049310 545045103 0.000000e+00 7771.0
1 TraesCS2D01G434200 chr2D 83.019 318 48 6 1401 1715 609884172 609884486 2.480000e-72 283.0
2 TraesCS2D01G434200 chr2D 83.182 220 10 4 1 219 612735384 612735577 4.320000e-40 176.0
3 TraesCS2D01G434200 chr2D 96.226 106 4 0 541 646 612735571 612735676 1.560000e-39 174.0
4 TraesCS2D01G434200 chr2A 86.374 2143 200 43 2121 4208 688227817 688229922 0.000000e+00 2255.0
5 TraesCS2D01G434200 chr2A 86.262 2140 213 46 2121 4208 688217125 688219235 0.000000e+00 2248.0
6 TraesCS2D01G434200 chr2A 85.728 2144 217 46 2122 4208 688206384 688208495 0.000000e+00 2182.0
7 TraesCS2D01G434200 chr2A 95.434 438 11 5 1651 2084 688205950 688206382 0.000000e+00 689.0
8 TraesCS2D01G434200 chr2A 94.796 442 14 5 1651 2087 688227382 688227819 0.000000e+00 680.0
9 TraesCS2D01G434200 chr2A 94.104 441 17 5 1651 2087 688216692 688217127 0.000000e+00 662.0
10 TraesCS2D01G434200 chr2A 86.562 573 42 17 1105 1661 688203523 688204076 2.170000e-167 599.0
11 TraesCS2D01G434200 chr2A 86.213 573 44 13 1105 1661 688214266 688214819 4.690000e-164 588.0
12 TraesCS2D01G434200 chr2A 85.490 572 40 14 1106 1661 688225006 688225550 1.320000e-154 556.0
13 TraesCS2D01G434200 chr2A 90.991 222 15 4 1 219 679931820 679931601 1.140000e-75 294.0
14 TraesCS2D01G434200 chr2A 85.978 271 36 2 1406 1675 742757418 742757687 5.320000e-74 289.0
15 TraesCS2D01G434200 chr2A 95.370 108 5 0 538 645 679931610 679931503 5.590000e-39 172.0
16 TraesCS2D01G434200 chr2B 84.964 1829 204 28 2152 3921 651962064 651960248 0.000000e+00 1788.0
17 TraesCS2D01G434200 chr2B 86.267 801 88 16 1264 2044 651962882 651962084 0.000000e+00 850.0
18 TraesCS2D01G434200 chr2B 89.600 500 40 4 3537 4028 651950694 651950199 3.570000e-175 625.0
19 TraesCS2D01G434200 chr2B 94.062 320 19 0 220 539 117897834 117898153 1.760000e-133 486.0
20 TraesCS2D01G434200 chr2B 89.562 297 19 6 992 1278 651963192 651962898 2.390000e-97 366.0
21 TraesCS2D01G434200 chr2B 93.151 219 12 2 1 218 651964080 651963864 6.790000e-83 318.0
22 TraesCS2D01G434200 chr2B 90.411 219 18 2 2 219 87840118 87839902 6.890000e-73 285.0
23 TraesCS2D01G434200 chr2B 92.661 109 8 0 538 646 651963872 651963764 1.570000e-34 158.0
24 TraesCS2D01G434200 chr2B 81.818 99 18 0 2820 2918 660985357 660985455 2.700000e-12 84.2
25 TraesCS2D01G434200 chr1B 96.117 309 12 0 219 527 388165576 388165268 4.860000e-139 505.0
26 TraesCS2D01G434200 chr1B 93.293 328 17 1 217 539 617872973 617873300 2.940000e-131 479.0
27 TraesCS2D01G434200 chr1B 85.209 311 44 2 1406 1715 638682882 638683191 6.790000e-83 318.0
28 TraesCS2D01G434200 chr1B 83.226 310 50 2 1407 1715 600915302 600915610 2.480000e-72 283.0
29 TraesCS2D01G434200 chr1B 90.845 142 11 1 76 217 683211541 683211680 5.550000e-44 189.0
30 TraesCS2D01G434200 chr7B 95.779 308 13 0 220 527 414158236 414158543 8.120000e-137 497.0
31 TraesCS2D01G434200 chr6D 95.779 308 13 0 220 527 8563180 8562873 8.120000e-137 497.0
32 TraesCS2D01G434200 chr6D 91.753 194 13 2 26 219 34740250 34740440 2.490000e-67 267.0
33 TraesCS2D01G434200 chr6D 87.129 101 10 3 819 918 34740717 34740815 1.240000e-20 111.0
34 TraesCS2D01G434200 chr7D 94.462 325 13 1 220 539 203402129 203402453 2.920000e-136 496.0
35 TraesCS2D01G434200 chr7D 94.062 320 18 1 220 539 165533578 165533896 6.330000e-133 484.0
36 TraesCS2D01G434200 chr7D 81.448 221 35 5 1 219 89310486 89310270 4.320000e-40 176.0
37 TraesCS2D01G434200 chr5D 93.846 325 19 1 219 543 540284202 540284525 4.890000e-134 488.0
38 TraesCS2D01G434200 chr5D 90.260 154 10 3 922 1075 412325214 412325362 3.320000e-46 196.0
39 TraesCS2D01G434200 chr4A 92.128 343 22 5 206 545 660777362 660777702 2.940000e-131 479.0
40 TraesCS2D01G434200 chr4A 84.091 88 11 3 535 621 687509363 687509448 9.700000e-12 82.4
41 TraesCS2D01G434200 chr1A 86.174 311 41 2 1406 1715 555129278 555129587 6.740000e-88 335.0
42 TraesCS2D01G434200 chr5B 91.371 197 15 1 23 219 595021301 595021495 6.930000e-68 268.0
43 TraesCS2D01G434200 chr3A 91.371 197 15 1 23 219 19505170 19505364 6.930000e-68 268.0
44 TraesCS2D01G434200 chr3B 90.845 142 11 1 76 217 675632252 675632391 5.550000e-44 189.0
45 TraesCS2D01G434200 chr3B 88.298 94 11 0 535 628 50407926 50407833 3.440000e-21 113.0
46 TraesCS2D01G434200 chrUn 86.928 153 15 2 918 1068 96596755 96596904 2.600000e-37 167.0
47 TraesCS2D01G434200 chrUn 78.947 114 23 1 2348 2461 26250706 26250818 4.510000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G434200 chr2D 545045103 545049310 4207 True 7771.000000 7771 100.000000 1 4208 1 chr2D.!!$R1 4207
1 TraesCS2D01G434200 chr2A 688214266 688219235 4969 False 1166.000000 2248 88.859667 1105 4208 3 chr2A.!!$F3 3103
2 TraesCS2D01G434200 chr2A 688225006 688229922 4916 False 1163.666667 2255 88.886667 1106 4208 3 chr2A.!!$F4 3102
3 TraesCS2D01G434200 chr2A 688203523 688208495 4972 False 1156.666667 2182 89.241333 1105 4208 3 chr2A.!!$F2 3103
4 TraesCS2D01G434200 chr2B 651960248 651964080 3832 True 696.000000 1788 89.321000 1 3921 5 chr2B.!!$R3 3920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 375 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.0 0.0 0.00 38.73 1.90 F
375 377 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.0 0.0 0.00 44.03 4.52 F
984 1039 0.106708 ATATCAAGCCGTCCATGCGT 59.893 50.0 0.0 0.00 0.00 5.24 F
2678 5002 0.519961 AAAGTTGCATACGGCCGAAC 59.480 50.0 35.9 24.65 43.89 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1567 0.247460 GGCTGGGTGGAATTTGAAGC 59.753 55.0 0.00 0.00 0.00 3.86 R
1636 2004 0.905809 AAGCATGGCCTTGCATTCCA 60.906 50.0 36.66 0.79 45.23 3.53 R
2715 5045 0.389426 ACTTCGGGTTCGATTCCGTG 60.389 55.0 21.10 17.63 45.51 4.94 R
4064 6475 0.100503 GTTGCTTGTTCCGTGTGCTT 59.899 50.0 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 7.744087 ATATGATTGTTTAGCGGCTTATCAA 57.256 32.000 8.26 11.31 0.00 2.57
59 61 7.744087 ATGATTGTTTAGCGGCTTATCAATA 57.256 32.000 19.42 11.70 0.00 1.90
90 92 5.232838 GTGAGGAACTTTGCTGAAAACAATG 59.767 40.000 0.00 0.00 41.55 2.82
96 98 7.225341 GGAACTTTGCTGAAAACAATGAAGAAT 59.775 33.333 0.00 0.00 0.00 2.40
181 183 5.866633 CAGTTGGTTTGCACTTTGTTAGAAA 59.133 36.000 0.00 0.00 0.00 2.52
182 184 6.534793 CAGTTGGTTTGCACTTTGTTAGAAAT 59.465 34.615 0.00 0.00 0.00 2.17
224 226 9.989869 GCTAGAAAATGTATTTGAAACTAGTCC 57.010 33.333 0.00 0.00 31.27 3.85
227 229 9.014297 AGAAAATGTATTTGAAACTAGTCCTGG 57.986 33.333 0.00 0.00 0.00 4.45
228 230 6.759497 AATGTATTTGAAACTAGTCCTGGC 57.241 37.500 0.00 0.00 0.00 4.85
229 231 4.585879 TGTATTTGAAACTAGTCCTGGCC 58.414 43.478 0.00 0.00 0.00 5.36
230 232 3.806949 ATTTGAAACTAGTCCTGGCCA 57.193 42.857 4.71 4.71 0.00 5.36
231 233 3.806949 TTTGAAACTAGTCCTGGCCAT 57.193 42.857 5.51 0.00 0.00 4.40
232 234 3.350219 TTGAAACTAGTCCTGGCCATC 57.650 47.619 5.51 0.00 0.00 3.51
233 235 2.551270 TGAAACTAGTCCTGGCCATCT 58.449 47.619 5.51 8.22 0.00 2.90
234 236 2.501723 TGAAACTAGTCCTGGCCATCTC 59.498 50.000 5.51 0.00 0.00 2.75
235 237 2.254152 AACTAGTCCTGGCCATCTCA 57.746 50.000 5.51 0.00 0.00 3.27
236 238 1.786937 ACTAGTCCTGGCCATCTCAG 58.213 55.000 5.51 2.71 0.00 3.35
277 279 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
278 280 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
279 281 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
280 282 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
286 288 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
287 289 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
288 290 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
331 333 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
332 334 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
333 335 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
334 336 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
335 337 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
336 338 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
337 339 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
338 340 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
339 341 0.178992 CCTGAGTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
340 342 1.242076 CTGAGTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
341 343 0.823356 TGAGTTTTGAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
342 344 0.823356 GAGTTTTGAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
343 345 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
344 346 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
364 366 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
365 367 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
370 372 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
371 373 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
372 374 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
373 375 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
374 376 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
375 377 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
388 390 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
389 391 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
390 392 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
391 393 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
392 394 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
393 395 2.042979 TGGCATTTTAAGGAAGAGGCCT 59.957 45.455 3.86 3.86 40.72 5.19
394 396 2.428530 GGCATTTTAAGGAAGAGGCCTG 59.571 50.000 12.00 0.00 38.58 4.85
395 397 2.428530 GCATTTTAAGGAAGAGGCCTGG 59.571 50.000 12.00 0.00 38.58 4.45
396 398 2.215942 TTTTAAGGAAGAGGCCTGGC 57.784 50.000 12.00 11.05 38.58 4.85
430 432 3.732048 CCCTAAGGGCTTTTTACCAGA 57.268 47.619 0.00 0.00 35.35 3.86
431 433 4.251103 CCCTAAGGGCTTTTTACCAGAT 57.749 45.455 0.00 0.00 35.35 2.90
432 434 3.954258 CCCTAAGGGCTTTTTACCAGATG 59.046 47.826 0.00 0.00 35.35 2.90
433 435 3.954258 CCTAAGGGCTTTTTACCAGATGG 59.046 47.826 0.00 0.00 42.17 3.51
434 436 2.532250 AGGGCTTTTTACCAGATGGG 57.468 50.000 3.48 0.00 44.81 4.00
443 445 2.124570 CCAGATGGGTCGGGCTTG 60.125 66.667 0.00 0.00 32.91 4.01
444 446 2.124570 CAGATGGGTCGGGCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
445 447 3.411517 AGATGGGTCGGGCTTGGG 61.412 66.667 0.00 0.00 0.00 4.12
450 452 4.344865 GGTCGGGCTTGGGCTTGA 62.345 66.667 0.00 0.00 38.73 3.02
451 453 2.282180 GTCGGGCTTGGGCTTGAA 60.282 61.111 0.00 0.00 38.73 2.69
452 454 1.901464 GTCGGGCTTGGGCTTGAAA 60.901 57.895 0.00 0.00 38.73 2.69
453 455 1.152652 TCGGGCTTGGGCTTGAAAA 60.153 52.632 0.00 0.00 38.73 2.29
467 469 4.236527 CTTGAAAAGTAGGCCCTATGGT 57.763 45.455 0.00 0.00 39.70 3.55
468 470 4.600062 CTTGAAAAGTAGGCCCTATGGTT 58.400 43.478 0.00 0.00 39.70 3.67
469 471 3.963129 TGAAAAGTAGGCCCTATGGTTG 58.037 45.455 0.00 0.00 0.00 3.77
470 472 3.288092 GAAAAGTAGGCCCTATGGTTGG 58.712 50.000 0.00 0.00 0.00 3.77
476 478 2.603008 CCCTATGGTTGGGCCTGG 59.397 66.667 4.53 0.00 37.99 4.45
477 479 2.316586 CCCTATGGTTGGGCCTGGT 61.317 63.158 4.53 0.00 37.99 4.00
478 480 0.991355 CCCTATGGTTGGGCCTGGTA 60.991 60.000 4.53 0.00 37.99 3.25
479 481 0.474184 CCTATGGTTGGGCCTGGTAG 59.526 60.000 4.53 0.29 38.35 3.18
480 482 0.474184 CTATGGTTGGGCCTGGTAGG 59.526 60.000 4.53 0.00 38.80 3.18
481 483 0.991355 TATGGTTGGGCCTGGTAGGG 60.991 60.000 4.53 0.00 35.37 3.53
498 500 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
499 501 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
500 502 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
501 503 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
502 504 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
503 505 1.228552 GGGCCTCAGTTTTCTGCCA 60.229 57.895 0.84 0.00 46.59 4.92
504 506 0.613012 GGGCCTCAGTTTTCTGCCAT 60.613 55.000 0.84 0.00 46.59 4.40
505 507 0.529378 GGCCTCAGTTTTCTGCCATG 59.471 55.000 0.00 0.00 46.59 3.66
506 508 0.529378 GCCTCAGTTTTCTGCCATGG 59.471 55.000 7.63 7.63 46.59 3.66
507 509 1.180029 CCTCAGTTTTCTGCCATGGG 58.820 55.000 15.13 0.00 46.59 4.00
528 530 3.274601 TTTTTAGGCCCGGTCCATG 57.725 52.632 3.37 0.00 0.00 3.66
529 531 0.323908 TTTTTAGGCCCGGTCCATGG 60.324 55.000 3.37 4.97 0.00 3.66
535 537 3.492353 CCCGGTCCATGGCCAGAT 61.492 66.667 13.05 0.00 0.00 2.90
536 538 2.146724 CCCGGTCCATGGCCAGATA 61.147 63.158 13.05 0.00 0.00 1.98
537 539 1.492133 CCCGGTCCATGGCCAGATAT 61.492 60.000 13.05 0.00 0.00 1.63
538 540 1.275666 CCGGTCCATGGCCAGATATA 58.724 55.000 13.05 0.00 0.00 0.86
539 541 1.839994 CCGGTCCATGGCCAGATATAT 59.160 52.381 13.05 0.00 0.00 0.86
540 542 2.239654 CCGGTCCATGGCCAGATATATT 59.760 50.000 13.05 0.00 0.00 1.28
541 543 3.308402 CCGGTCCATGGCCAGATATATTT 60.308 47.826 13.05 0.00 0.00 1.40
542 544 3.691118 CGGTCCATGGCCAGATATATTTG 59.309 47.826 13.05 0.88 0.00 2.32
543 545 4.565444 CGGTCCATGGCCAGATATATTTGA 60.565 45.833 13.05 0.00 0.00 2.69
546 548 6.294731 GGTCCATGGCCAGATATATTTGAAAC 60.295 42.308 13.05 3.87 0.00 2.78
554 556 8.424133 GGCCAGATATATTTGAAACCAAAGAAT 58.576 33.333 0.00 0.00 37.01 2.40
611 613 4.846779 TTATGGAACTTGTTTGAGCCAC 57.153 40.909 0.00 0.00 0.00 5.01
612 614 1.021202 TGGAACTTGTTTGAGCCACG 58.979 50.000 0.00 0.00 0.00 4.94
628 630 4.542735 AGCCACGCACAATTTAAGTTTAC 58.457 39.130 0.00 0.00 0.00 2.01
677 719 9.340695 CAATTTGCGTCAGAAGTTCAAATATAA 57.659 29.630 5.50 0.00 36.64 0.98
738 788 8.411991 TTCAAGTTTTACAAGGGGGTAATAAG 57.588 34.615 0.00 0.00 33.56 1.73
753 803 6.382859 GGGGTAATAAGATGATGGGTTTGTTT 59.617 38.462 0.00 0.00 0.00 2.83
756 806 5.937975 ATAAGATGATGGGTTTGTTTGGG 57.062 39.130 0.00 0.00 0.00 4.12
758 808 3.434309 AGATGATGGGTTTGTTTGGGAG 58.566 45.455 0.00 0.00 0.00 4.30
760 810 2.875296 TGATGGGTTTGTTTGGGAGAG 58.125 47.619 0.00 0.00 0.00 3.20
761 811 2.445145 TGATGGGTTTGTTTGGGAGAGA 59.555 45.455 0.00 0.00 0.00 3.10
762 812 2.656947 TGGGTTTGTTTGGGAGAGAG 57.343 50.000 0.00 0.00 0.00 3.20
763 813 2.131854 TGGGTTTGTTTGGGAGAGAGA 58.868 47.619 0.00 0.00 0.00 3.10
764 814 2.512056 TGGGTTTGTTTGGGAGAGAGAA 59.488 45.455 0.00 0.00 0.00 2.87
765 815 3.149981 GGGTTTGTTTGGGAGAGAGAAG 58.850 50.000 0.00 0.00 0.00 2.85
766 816 3.181443 GGGTTTGTTTGGGAGAGAGAAGA 60.181 47.826 0.00 0.00 0.00 2.87
767 817 4.068599 GGTTTGTTTGGGAGAGAGAAGAG 58.931 47.826 0.00 0.00 0.00 2.85
768 818 4.202367 GGTTTGTTTGGGAGAGAGAAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
769 819 4.881019 TTGTTTGGGAGAGAGAAGAGAG 57.119 45.455 0.00 0.00 0.00 3.20
770 820 4.119556 TGTTTGGGAGAGAGAAGAGAGA 57.880 45.455 0.00 0.00 0.00 3.10
771 821 4.085733 TGTTTGGGAGAGAGAAGAGAGAG 58.914 47.826 0.00 0.00 0.00 3.20
772 822 4.086457 GTTTGGGAGAGAGAAGAGAGAGT 58.914 47.826 0.00 0.00 0.00 3.24
773 823 3.644966 TGGGAGAGAGAAGAGAGAGTC 57.355 52.381 0.00 0.00 0.00 3.36
774 824 2.916269 TGGGAGAGAGAAGAGAGAGTCA 59.084 50.000 0.00 0.00 0.00 3.41
775 825 3.279434 GGGAGAGAGAAGAGAGAGTCAC 58.721 54.545 0.00 0.00 0.00 3.67
776 826 3.308117 GGGAGAGAGAAGAGAGAGTCACA 60.308 52.174 0.00 0.00 0.00 3.58
777 827 4.526970 GGAGAGAGAAGAGAGAGTCACAT 58.473 47.826 0.00 0.00 0.00 3.21
778 828 4.576463 GGAGAGAGAAGAGAGAGTCACATC 59.424 50.000 0.00 0.00 0.00 3.06
779 829 5.178096 AGAGAGAAGAGAGAGTCACATCA 57.822 43.478 0.00 0.00 0.00 3.07
780 830 5.188434 AGAGAGAAGAGAGAGTCACATCAG 58.812 45.833 0.00 0.00 0.00 2.90
781 831 3.696051 AGAGAAGAGAGAGTCACATCAGC 59.304 47.826 0.00 0.00 0.00 4.26
782 832 2.760092 AGAAGAGAGAGTCACATCAGCC 59.240 50.000 0.00 0.00 0.00 4.85
783 833 2.530460 AGAGAGAGTCACATCAGCCT 57.470 50.000 0.00 0.00 0.00 4.58
784 834 2.101783 AGAGAGAGTCACATCAGCCTG 58.898 52.381 0.00 0.00 0.00 4.85
785 835 1.824230 GAGAGAGTCACATCAGCCTGT 59.176 52.381 0.00 0.00 0.00 4.00
786 836 2.233431 GAGAGAGTCACATCAGCCTGTT 59.767 50.000 0.00 0.00 0.00 3.16
787 837 2.636893 AGAGAGTCACATCAGCCTGTTT 59.363 45.455 0.00 0.00 0.00 2.83
788 838 3.072184 AGAGAGTCACATCAGCCTGTTTT 59.928 43.478 0.00 0.00 0.00 2.43
789 839 3.817647 GAGAGTCACATCAGCCTGTTTTT 59.182 43.478 0.00 0.00 0.00 1.94
816 866 2.895680 TTTTTGCGGCAAGGCACA 59.104 50.000 15.78 0.00 43.82 4.57
817 867 1.445095 TTTTTGCGGCAAGGCACAT 59.555 47.368 15.78 0.00 43.82 3.21
840 890 1.068333 GCCTGTTGATTTGACGTGCAT 60.068 47.619 0.00 0.00 0.00 3.96
842 892 2.030893 CCTGTTGATTTGACGTGCATGT 60.031 45.455 12.38 12.38 0.00 3.21
855 905 4.621991 ACGTGCATGTAGGATAGTTGATC 58.378 43.478 10.57 0.00 0.00 2.92
860 910 5.600069 TGCATGTAGGATAGTTGATCTGACT 59.400 40.000 7.35 7.35 34.66 3.41
868 918 2.786777 AGTTGATCTGACTTGCATGCA 58.213 42.857 18.46 18.46 0.00 3.96
881 931 1.454479 CATGCAGGATGGGTGGACC 60.454 63.158 0.00 0.00 35.86 4.46
911 962 1.741770 GTGCGCCCAGTGAGTTAGG 60.742 63.158 4.18 0.00 0.00 2.69
912 963 1.911269 TGCGCCCAGTGAGTTAGGA 60.911 57.895 4.18 0.00 0.00 2.94
951 1006 4.092821 ACACGACATATGTTGGACGATTTG 59.907 41.667 24.01 14.60 34.79 2.32
960 1015 1.006825 TGGACGATTTGCAGACGACG 61.007 55.000 14.13 0.00 0.00 5.12
966 1021 2.268298 GATTTGCAGACGACGGTACAT 58.732 47.619 0.00 0.00 0.00 2.29
984 1039 0.106708 ATATCAAGCCGTCCATGCGT 59.893 50.000 0.00 0.00 0.00 5.24
994 1049 2.006888 CGTCCATGCGTCAGGTAAAAT 58.993 47.619 0.00 0.00 0.00 1.82
1007 1291 1.403647 GGTAAAATTTGACAGGGCCGC 60.404 52.381 7.99 0.00 0.00 6.53
1014 1298 2.514824 GACAGGGCCGCTCAATCC 60.515 66.667 0.00 0.00 0.00 3.01
1021 1305 2.890109 GCCGCTCAATCCTGCATCG 61.890 63.158 0.00 0.00 0.00 3.84
1035 1319 1.154205 GCATCGTGCATAGTTCGGCT 61.154 55.000 0.00 0.00 44.26 5.52
1036 1320 0.578683 CATCGTGCATAGTTCGGCTG 59.421 55.000 0.00 0.00 0.00 4.85
1037 1321 0.530650 ATCGTGCATAGTTCGGCTGG 60.531 55.000 0.00 0.00 0.00 4.85
1038 1322 2.813179 CGTGCATAGTTCGGCTGGC 61.813 63.158 0.00 0.00 0.00 4.85
1039 1323 2.511373 TGCATAGTTCGGCTGGCG 60.511 61.111 18.26 18.26 33.36 5.69
1040 1324 3.941836 GCATAGTTCGGCTGGCGC 61.942 66.667 19.55 0.00 0.00 6.53
1084 1373 5.469084 AGTTTCGTAGACAAAATCCACTTCC 59.531 40.000 0.00 0.00 34.32 3.46
1085 1374 3.934068 TCGTAGACAAAATCCACTTCCC 58.066 45.455 0.00 0.00 0.00 3.97
1182 1474 5.220873 GCAACTTTCCGAGGAGAAATAATCC 60.221 44.000 0.00 0.00 35.30 3.01
1222 1519 3.756434 TGGGAAATGAAAAGATCGACACC 59.244 43.478 0.00 0.00 0.00 4.16
1240 1549 2.164422 CACCATAGAGACTCTTCGCACA 59.836 50.000 10.96 0.00 0.00 4.57
1258 1567 3.244976 CACAAAGCCTTCAATTTAGCCG 58.755 45.455 0.00 0.00 0.00 5.52
1297 1636 3.857093 GCCATTTAATTGTGCTGTTACCG 59.143 43.478 0.00 0.00 0.00 4.02
1352 1694 6.878317 TGTGGAGTACTTAAAGATCCATCTG 58.122 40.000 0.00 0.00 41.81 2.90
1372 1740 3.567397 TGGCTCAGGAGATAGAACCTAC 58.433 50.000 0.00 0.00 34.87 3.18
1382 1750 5.128827 GGAGATAGAACCTACAACATCCACA 59.871 44.000 0.00 0.00 0.00 4.17
1385 1753 7.633789 AGATAGAACCTACAACATCCACAAAT 58.366 34.615 0.00 0.00 0.00 2.32
1572 1940 1.051008 TCTTGGCAAGCAGTCTCAGA 58.949 50.000 22.31 0.00 0.00 3.27
1589 1957 3.114606 TCAGATAGGGTGCCTTGATGAA 58.885 45.455 0.00 0.00 34.61 2.57
1597 1965 2.744202 GGTGCCTTGATGAACTGTACAG 59.256 50.000 21.44 21.44 0.00 2.74
1601 1969 3.307059 GCCTTGATGAACTGTACAGGAGT 60.307 47.826 26.12 11.41 0.00 3.85
1617 1985 3.096092 AGGAGTGTGGAGAGTCTCAATC 58.904 50.000 21.53 10.36 31.08 2.67
1636 2004 6.012113 TCAATCAAGATCACTTCCAAACCAT 58.988 36.000 0.00 0.00 33.70 3.55
1691 4008 1.001020 TGCGGCATTCCACTTGGAT 60.001 52.632 0.00 0.00 44.98 3.41
1697 4014 1.303309 CATTCCACTTGGATCGGCTC 58.697 55.000 0.00 0.00 44.98 4.70
1904 4224 3.640498 ACATCGTCACTGATGATCTCCAT 59.360 43.478 10.37 0.00 46.98 3.41
2006 4326 6.927381 AGAAAATTCTTGAACTGAATGCCAAG 59.073 34.615 0.00 0.00 37.82 3.61
2049 4370 3.136626 ACTCCTTCTCATTTTATCCCCCG 59.863 47.826 0.00 0.00 0.00 5.73
2112 4434 6.377327 TTTTTGCGAGAAAACTTCTGATCT 57.623 33.333 0.00 0.00 40.87 2.75
2113 4435 7.490962 TTTTTGCGAGAAAACTTCTGATCTA 57.509 32.000 0.00 0.00 40.87 1.98
2114 4436 7.672983 TTTTGCGAGAAAACTTCTGATCTAT 57.327 32.000 0.00 0.00 40.87 1.98
2115 4437 7.672983 TTTGCGAGAAAACTTCTGATCTATT 57.327 32.000 0.00 0.00 40.87 1.73
2116 4438 6.893958 TGCGAGAAAACTTCTGATCTATTC 57.106 37.500 0.00 0.00 40.87 1.75
2117 4439 6.398095 TGCGAGAAAACTTCTGATCTATTCA 58.602 36.000 0.00 0.00 40.87 2.57
2118 4440 7.044181 TGCGAGAAAACTTCTGATCTATTCAT 58.956 34.615 0.00 0.00 40.87 2.57
2119 4441 7.223582 TGCGAGAAAACTTCTGATCTATTCATC 59.776 37.037 0.00 0.00 40.87 2.92
2120 4442 7.437862 GCGAGAAAACTTCTGATCTATTCATCT 59.562 37.037 0.00 0.00 40.87 2.90
2121 4443 8.967218 CGAGAAAACTTCTGATCTATTCATCTC 58.033 37.037 0.00 0.00 40.87 2.75
2175 4497 7.645340 CCGTCATTTTTCTTGCAGATAATTAGG 59.355 37.037 0.00 0.00 0.00 2.69
2304 4628 2.276732 TTCCCAAAGAAGCCAGTGAG 57.723 50.000 0.00 0.00 0.00 3.51
2309 4633 3.539604 CCAAAGAAGCCAGTGAGGATAG 58.460 50.000 0.00 0.00 41.22 2.08
2554 4878 4.504858 AGAATGCCAAACGGTACTTCTAG 58.495 43.478 0.00 0.00 0.00 2.43
2616 4940 6.390721 TGTACTACAAACAGAAGAGATGAGC 58.609 40.000 0.00 0.00 0.00 4.26
2629 4953 1.558756 AGATGAGCCCAAGAAGTCTGG 59.441 52.381 0.00 0.00 0.00 3.86
2636 4960 1.528129 CCAAGAAGTCTGGCCTTCAC 58.472 55.000 3.32 0.00 42.68 3.18
2646 4970 0.961019 TGGCCTTCACATGCTTCAAC 59.039 50.000 3.32 0.00 0.00 3.18
2675 4999 1.735571 AGTTAAAGTTGCATACGGCCG 59.264 47.619 26.86 26.86 43.89 6.13
2678 5002 0.519961 AAAGTTGCATACGGCCGAAC 59.480 50.000 35.90 24.65 43.89 3.95
2702 5026 3.154589 GCAGTTGCAGGTACCCTAC 57.845 57.895 8.74 1.32 41.59 3.18
2707 5031 0.974010 TTGCAGGTACCCTACGGAGG 60.974 60.000 6.75 6.75 43.33 4.30
2750 5080 3.545703 CGAAGTTCCAAGGCATAGGAAT 58.454 45.455 8.26 0.00 44.98 3.01
2753 5083 4.322057 AGTTCCAAGGCATAGGAATTGT 57.678 40.909 8.26 0.00 44.98 2.71
2851 5187 2.158769 ACCAACACTCTGCAAGTCATGA 60.159 45.455 0.00 0.00 35.45 3.07
2908 5244 5.708948 AGAAAGATCTCACTCTCGACAAAG 58.291 41.667 0.00 0.00 0.00 2.77
3006 5342 6.267471 AGCCATTTGTTCTTGGTTATTTCAGA 59.733 34.615 0.00 0.00 35.34 3.27
3007 5343 6.587608 GCCATTTGTTCTTGGTTATTTCAGAG 59.412 38.462 0.00 0.00 35.34 3.35
3010 5346 8.971321 CATTTGTTCTTGGTTATTTCAGAGTTG 58.029 33.333 0.00 0.00 0.00 3.16
3011 5347 6.072112 TGTTCTTGGTTATTTCAGAGTTGC 57.928 37.500 0.00 0.00 0.00 4.17
3023 5387 2.149578 CAGAGTTGCTCTCCTTGTTGG 58.850 52.381 0.00 0.00 43.71 3.77
3091 5455 2.350134 CAGCTTGCTCCTGCCTCA 59.650 61.111 0.00 0.00 38.71 3.86
3163 5528 6.198029 CCAGAATATGCGATCGATGAAGATAC 59.802 42.308 21.57 0.00 0.00 2.24
3164 5529 6.198029 CAGAATATGCGATCGATGAAGATACC 59.802 42.308 21.57 0.00 0.00 2.73
3166 5531 3.942130 TGCGATCGATGAAGATACCAT 57.058 42.857 21.57 0.00 0.00 3.55
3167 5532 3.838120 TGCGATCGATGAAGATACCATC 58.162 45.455 21.57 0.00 37.60 3.51
3197 5562 9.672673 AGTCTAGTTTACTAATACTGTTCCGTA 57.327 33.333 4.60 0.00 0.00 4.02
3222 5588 3.689161 TGAATAATGTTGGAACTGCCTCG 59.311 43.478 0.00 0.00 37.63 4.63
3225 5591 2.094762 ATGTTGGAACTGCCTCGTAC 57.905 50.000 0.00 0.00 37.63 3.67
3235 5601 0.246635 TGCCTCGTACCTCTTTGCTC 59.753 55.000 0.00 0.00 0.00 4.26
3236 5602 0.533032 GCCTCGTACCTCTTTGCTCT 59.467 55.000 0.00 0.00 0.00 4.09
3258 5624 6.820335 TCTTGGTATCATGTCTCGAATGAAT 58.180 36.000 2.56 0.00 37.58 2.57
3263 5629 8.084684 TGGTATCATGTCTCGAATGAATAGAAG 58.915 37.037 2.56 0.00 37.58 2.85
3273 5639 4.260538 CGAATGAATAGAAGAGCCACTTGC 60.261 45.833 0.00 0.00 39.13 4.01
3301 5667 1.654023 GCGCGGGACCTGCTTTATTT 61.654 55.000 22.91 0.00 0.00 1.40
3321 5687 1.745232 ATGCCCGTTTCGATTGCTTA 58.255 45.000 0.00 0.00 0.00 3.09
3324 5690 2.293677 TGCCCGTTTCGATTGCTTAAAA 59.706 40.909 0.00 0.00 0.00 1.52
3331 5697 7.095816 CCCGTTTCGATTGCTTAAAATTTTCTT 60.096 33.333 6.72 0.00 0.00 2.52
3359 5725 6.729690 TTCATGTTTTTCCTCTTCATTGGT 57.270 33.333 0.00 0.00 0.00 3.67
3380 5746 4.979197 GGTTATTTCACAAACATTGCGACA 59.021 37.500 0.00 0.00 0.00 4.35
3396 5762 2.871133 CGACAGCATCGTACCAAAGTA 58.129 47.619 2.43 0.00 46.25 2.24
3408 5774 8.767085 CATCGTACCAAAGTACTTTTTAGAACA 58.233 33.333 18.25 1.14 45.68 3.18
3409 5775 8.715191 TCGTACCAAAGTACTTTTTAGAACAA 57.285 30.769 18.25 0.00 45.68 2.83
3418 5784 8.926715 AGTACTTTTTAGAACAAAAAGGCTTG 57.073 30.769 20.36 0.00 46.19 4.01
3435 5801 2.418746 GCTTGAGATGAGTCCGGCTTTA 60.419 50.000 0.00 0.00 0.00 1.85
3439 5805 5.607939 TGAGATGAGTCCGGCTTTAAATA 57.392 39.130 0.00 0.00 0.00 1.40
3465 5831 5.820947 ACAAAGTCGTCAATCAACTAGGTTT 59.179 36.000 0.00 0.00 0.00 3.27
3466 5832 6.987992 ACAAAGTCGTCAATCAACTAGGTTTA 59.012 34.615 0.00 0.00 0.00 2.01
3473 5859 6.074195 CGTCAATCAACTAGGTTTACGTGAAA 60.074 38.462 0.00 0.00 0.00 2.69
3474 5860 7.067728 GTCAATCAACTAGGTTTACGTGAAAC 58.932 38.462 0.00 0.00 45.80 2.78
3484 5870 3.408288 TTACGTGAAACACCAACTTGC 57.592 42.857 0.00 0.00 35.74 4.01
3485 5871 1.169577 ACGTGAAACACCAACTTGCA 58.830 45.000 0.00 0.00 35.74 4.08
3486 5872 1.542030 ACGTGAAACACCAACTTGCAA 59.458 42.857 0.00 0.00 35.74 4.08
3487 5873 2.029828 ACGTGAAACACCAACTTGCAAA 60.030 40.909 0.00 0.00 35.74 3.68
3488 5874 2.344142 CGTGAAACACCAACTTGCAAAC 59.656 45.455 0.00 0.00 35.74 2.93
3489 5875 3.321497 GTGAAACACCAACTTGCAAACA 58.679 40.909 0.00 0.00 36.32 2.83
3490 5876 3.367630 GTGAAACACCAACTTGCAAACAG 59.632 43.478 0.00 0.00 36.32 3.16
3491 5877 3.256879 TGAAACACCAACTTGCAAACAGA 59.743 39.130 0.00 0.00 0.00 3.41
3492 5878 3.951775 AACACCAACTTGCAAACAGAA 57.048 38.095 0.00 0.00 0.00 3.02
3493 5879 3.508744 ACACCAACTTGCAAACAGAAG 57.491 42.857 0.00 0.00 0.00 2.85
3494 5880 3.088532 ACACCAACTTGCAAACAGAAGA 58.911 40.909 0.00 0.00 0.00 2.87
3499 5885 5.639082 ACCAACTTGCAAACAGAAGAAAAAG 59.361 36.000 0.00 0.00 0.00 2.27
3500 5886 5.868801 CCAACTTGCAAACAGAAGAAAAAGA 59.131 36.000 0.00 0.00 0.00 2.52
3506 5892 8.600449 TTGCAAACAGAAGAAAAAGAAAAAGA 57.400 26.923 0.00 0.00 0.00 2.52
3531 5917 2.203294 GGACGCAACCCCAACAGT 60.203 61.111 0.00 0.00 0.00 3.55
3532 5918 1.071814 GGACGCAACCCCAACAGTA 59.928 57.895 0.00 0.00 0.00 2.74
3533 5919 0.322187 GGACGCAACCCCAACAGTAT 60.322 55.000 0.00 0.00 0.00 2.12
3534 5920 1.065998 GGACGCAACCCCAACAGTATA 60.066 52.381 0.00 0.00 0.00 1.47
3535 5921 2.277084 GACGCAACCCCAACAGTATAG 58.723 52.381 0.00 0.00 0.00 1.31
3638 6040 0.038744 CACATGCCCTTTCACCCTCT 59.961 55.000 0.00 0.00 0.00 3.69
3642 6044 1.075601 TGCCCTTTCACCCTCTGATT 58.924 50.000 0.00 0.00 0.00 2.57
3676 6078 2.827921 ACCATCGGTAAGTTAGAACGGT 59.172 45.455 0.00 0.00 32.11 4.83
3677 6079 3.119352 ACCATCGGTAAGTTAGAACGGTC 60.119 47.826 0.00 0.00 32.11 4.79
3678 6080 2.900122 TCGGTAAGTTAGAACGGTCG 57.100 50.000 0.00 0.00 0.00 4.79
3721 6125 6.018016 AGCTGACAAATAAACAAAATGTTGCC 60.018 34.615 0.00 0.00 40.14 4.52
3742 6146 1.535462 CGCAACCACCTTACCAAGAAG 59.465 52.381 0.00 0.00 0.00 2.85
3756 6160 1.893801 CAAGAAGACTACCCACGGACT 59.106 52.381 0.00 0.00 0.00 3.85
3764 6168 1.416401 CTACCCACGGACTAATGCCAT 59.584 52.381 0.00 0.00 0.00 4.40
3783 6187 1.203237 TCACCCACATCACGGATCAT 58.797 50.000 0.00 0.00 0.00 2.45
3849 6260 4.612264 AGAATTGAGCAACAAAGCCATT 57.388 36.364 0.86 0.00 42.03 3.16
3889 6300 1.000827 GAGACCACGATCGCTCATCAT 60.001 52.381 16.60 0.00 0.00 2.45
3902 6313 2.621526 GCTCATCATCACCATTGCATCA 59.378 45.455 0.00 0.00 0.00 3.07
3910 6321 2.492881 TCACCATTGCATCATTGTCACC 59.507 45.455 0.00 0.00 0.00 4.02
3935 6346 2.701423 GAGTGTTCCCTATTCCCCTCTC 59.299 54.545 0.00 0.00 0.00 3.20
3941 6352 1.691482 CCCTATTCCCCTCTCGGTCAA 60.691 57.143 0.00 0.00 0.00 3.18
3943 6354 2.037772 CCTATTCCCCTCTCGGTCAATG 59.962 54.545 0.00 0.00 0.00 2.82
3945 6356 0.902531 TTCCCCTCTCGGTCAATGTC 59.097 55.000 0.00 0.00 0.00 3.06
3952 6363 1.618343 TCTCGGTCAATGTCAAGAGCA 59.382 47.619 8.11 0.00 32.77 4.26
3969 6380 2.548057 GAGCATTGACCTGTCGAACAAA 59.452 45.455 0.00 0.00 0.00 2.83
3970 6381 2.948979 AGCATTGACCTGTCGAACAAAA 59.051 40.909 0.00 0.00 0.00 2.44
3977 6388 1.196808 CCTGTCGAACAAAATGGACCG 59.803 52.381 0.00 0.00 0.00 4.79
3986 6397 1.265635 CAAAATGGACCGCACGAAGAA 59.734 47.619 0.00 0.00 0.00 2.52
3987 6398 1.156736 AAATGGACCGCACGAAGAAG 58.843 50.000 0.00 0.00 0.00 2.85
3997 6408 1.750351 CACGAAGAAGAACACGACGA 58.250 50.000 0.00 0.00 0.00 4.20
4023 6434 1.235724 GAGGAAACCAAACCTCCACG 58.764 55.000 0.00 0.00 44.70 4.94
4040 6451 3.755628 GGAGGCGCGTCACCACTA 61.756 66.667 29.07 0.00 0.00 2.74
4055 6466 6.206498 GTCACCACTAGAAATGAAAAACACC 58.794 40.000 0.00 0.00 0.00 4.16
4063 6474 4.342092 AGAAATGAAAAACACCTCCACCAG 59.658 41.667 0.00 0.00 0.00 4.00
4064 6475 3.593442 ATGAAAAACACCTCCACCAGA 57.407 42.857 0.00 0.00 0.00 3.86
4072 6483 1.669115 CCTCCACCAGAAGCACACG 60.669 63.158 0.00 0.00 0.00 4.49
4085 6496 0.100503 GCACACGGAACAAGCAACTT 59.899 50.000 0.00 0.00 0.00 2.66
4095 6506 1.340991 ACAAGCAACTTCCCACACACT 60.341 47.619 0.00 0.00 0.00 3.55
4097 6508 0.466189 AGCAACTTCCCACACACTGG 60.466 55.000 0.00 0.00 40.26 4.00
4116 6527 1.573829 GCACACACCCACACATACCG 61.574 60.000 0.00 0.00 0.00 4.02
4118 6529 0.759959 ACACACCCACACATACCGAA 59.240 50.000 0.00 0.00 0.00 4.30
4122 6533 2.222886 CACCCACACATACCGAAAACA 58.777 47.619 0.00 0.00 0.00 2.83
4123 6534 2.031508 CACCCACACATACCGAAAACAC 60.032 50.000 0.00 0.00 0.00 3.32
4147 6558 0.895530 TCCAAGGAGGTGATGACGTC 59.104 55.000 9.11 9.11 39.02 4.34
4151 6562 0.322636 AGGAGGTGATGACGTCGAGT 60.323 55.000 11.62 0.00 37.78 4.18
4153 6564 0.798771 GAGGTGATGACGTCGAGTGC 60.799 60.000 11.62 0.00 0.00 4.40
4155 6566 2.152699 GTGATGACGTCGAGTGCCG 61.153 63.158 11.62 0.00 40.25 5.69
4173 6584 4.830765 TCGCCGCCCGATTCCAAG 62.831 66.667 0.00 0.00 41.89 3.61
4175 6586 4.483243 GCCGCCCGATTCCAAGGA 62.483 66.667 0.00 0.00 0.00 3.36
4176 6587 2.510906 CCGCCCGATTCCAAGGAT 59.489 61.111 0.00 0.00 0.00 3.24
4177 6588 1.152963 CCGCCCGATTCCAAGGATT 60.153 57.895 0.00 0.00 0.00 3.01
4192 6603 3.903530 AGGATTGAGGGTTTTCACCTT 57.096 42.857 0.00 0.00 43.65 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.920665 TCAGTTTTAGTCACAAAAATGTGTTTG 58.079 29.630 8.64 0.00 41.68 2.93
36 38 7.744087 ATATTGATAAGCCGCTAAACAATCA 57.256 32.000 16.54 8.99 0.00 2.57
48 50 9.952188 GTTCCTCACTAAAAATATTGATAAGCC 57.048 33.333 0.00 0.00 0.00 4.35
57 59 8.635765 TCAGCAAAGTTCCTCACTAAAAATAT 57.364 30.769 0.00 0.00 32.94 1.28
59 61 6.959639 TCAGCAAAGTTCCTCACTAAAAAT 57.040 33.333 0.00 0.00 32.94 1.82
215 217 2.503356 CTGAGATGGCCAGGACTAGTTT 59.497 50.000 13.05 0.00 0.00 2.66
216 218 2.114616 CTGAGATGGCCAGGACTAGTT 58.885 52.381 13.05 0.00 0.00 2.24
217 219 1.786937 CTGAGATGGCCAGGACTAGT 58.213 55.000 13.05 0.00 0.00 2.57
261 263 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
262 264 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
263 265 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
268 270 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
269 271 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
313 315 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
314 316 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
315 317 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
316 318 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
317 319 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
319 321 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
320 322 0.178992 TGGTGGGCTCAAAACTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
321 323 1.242076 CTGGTGGGCTCAAAACTCAG 58.758 55.000 0.00 0.00 0.00 3.35
322 324 0.823356 GCTGGTGGGCTCAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
323 325 0.823356 TGCTGGTGGGCTCAAAACTC 60.823 55.000 0.00 0.00 0.00 3.01
324 326 0.825010 CTGCTGGTGGGCTCAAAACT 60.825 55.000 0.00 0.00 0.00 2.66
325 327 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
326 328 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
327 329 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
328 330 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
335 337 4.729918 GTCCAGGCCCTGCTGGTG 62.730 72.222 4.81 0.37 41.28 4.17
347 349 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
348 350 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
353 355 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
354 356 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
355 357 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
356 358 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
357 359 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
358 360 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
359 361 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
360 362 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
361 363 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
362 364 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
363 365 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
364 366 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
365 367 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
366 368 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
367 369 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
368 370 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
369 371 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
370 372 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
371 373 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
372 374 2.042979 AGGCCTCTTCCTTAAAATGCCA 59.957 45.455 0.00 0.00 40.08 4.92
373 375 2.428530 CAGGCCTCTTCCTTAAAATGCC 59.571 50.000 0.00 0.00 37.91 4.40
374 376 2.428530 CCAGGCCTCTTCCTTAAAATGC 59.571 50.000 0.00 0.00 33.25 3.56
375 377 2.428530 GCCAGGCCTCTTCCTTAAAATG 59.571 50.000 0.00 0.00 33.25 2.32
376 378 2.624293 GGCCAGGCCTCTTCCTTAAAAT 60.624 50.000 24.99 0.00 46.69 1.82
377 379 1.272480 GGCCAGGCCTCTTCCTTAAAA 60.272 52.381 24.99 0.00 46.69 1.52
378 380 0.331616 GGCCAGGCCTCTTCCTTAAA 59.668 55.000 24.99 0.00 46.69 1.52
379 381 1.999346 GGCCAGGCCTCTTCCTTAA 59.001 57.895 24.99 0.00 46.69 1.85
380 382 3.741325 GGCCAGGCCTCTTCCTTA 58.259 61.111 24.99 0.00 46.69 2.69
411 413 3.954258 CCATCTGGTAAAAAGCCCTTAGG 59.046 47.826 0.00 0.00 0.00 2.69
412 414 3.954258 CCCATCTGGTAAAAAGCCCTTAG 59.046 47.826 0.00 0.00 0.00 2.18
413 415 3.976015 CCCATCTGGTAAAAAGCCCTTA 58.024 45.455 0.00 0.00 0.00 2.69
414 416 2.820178 CCCATCTGGTAAAAAGCCCTT 58.180 47.619 0.00 0.00 0.00 3.95
415 417 2.532250 CCCATCTGGTAAAAAGCCCT 57.468 50.000 0.00 0.00 0.00 5.19
426 428 2.124570 CAAGCCCGACCCATCTGG 60.125 66.667 0.00 0.00 41.37 3.86
427 429 2.124570 CCAAGCCCGACCCATCTG 60.125 66.667 0.00 0.00 0.00 2.90
428 430 3.411517 CCCAAGCCCGACCCATCT 61.412 66.667 0.00 0.00 0.00 2.90
433 435 3.860930 TTCAAGCCCAAGCCCGACC 62.861 63.158 0.00 0.00 41.25 4.79
434 436 1.460273 TTTTCAAGCCCAAGCCCGAC 61.460 55.000 0.00 0.00 41.25 4.79
435 437 1.152652 TTTTCAAGCCCAAGCCCGA 60.153 52.632 0.00 0.00 41.25 5.14
436 438 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
437 439 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
438 440 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
439 441 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
440 442 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
441 443 1.627864 GGCCTACTTTTCAAGCCCAA 58.372 50.000 0.00 0.00 37.66 4.12
442 444 3.356814 GGCCTACTTTTCAAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
444 446 2.801077 TAGGGCCTACTTTTCAAGCC 57.199 50.000 9.81 0.00 43.09 4.35
445 447 2.952310 CCATAGGGCCTACTTTTCAAGC 59.048 50.000 17.19 0.00 0.00 4.01
446 448 4.236527 ACCATAGGGCCTACTTTTCAAG 57.763 45.455 17.19 1.21 37.90 3.02
447 449 4.340617 CAACCATAGGGCCTACTTTTCAA 58.659 43.478 17.19 0.00 37.90 2.69
448 450 3.308832 CCAACCATAGGGCCTACTTTTCA 60.309 47.826 17.19 0.00 37.90 2.69
449 451 3.288092 CCAACCATAGGGCCTACTTTTC 58.712 50.000 17.19 0.00 37.90 2.29
450 452 2.024369 CCCAACCATAGGGCCTACTTTT 60.024 50.000 17.19 5.98 39.96 2.27
451 453 1.569072 CCCAACCATAGGGCCTACTTT 59.431 52.381 17.19 6.36 39.96 2.66
452 454 1.222567 CCCAACCATAGGGCCTACTT 58.777 55.000 17.19 4.76 39.96 2.24
453 455 2.945718 CCCAACCATAGGGCCTACT 58.054 57.895 17.19 2.37 39.96 2.57
460 462 0.474184 CTACCAGGCCCAACCATAGG 59.526 60.000 0.00 0.00 43.14 2.57
461 463 0.474184 CCTACCAGGCCCAACCATAG 59.526 60.000 0.00 0.00 43.14 2.23
462 464 0.991355 CCCTACCAGGCCCAACCATA 60.991 60.000 0.00 0.00 43.14 2.74
463 465 2.316586 CCCTACCAGGCCCAACCAT 61.317 63.158 0.00 0.00 43.14 3.55
464 466 2.938798 CCCTACCAGGCCCAACCA 60.939 66.667 0.00 0.00 43.14 3.67
484 486 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
485 487 0.613012 ATGGCAGAAAACTGAGGCCC 60.613 55.000 0.00 0.00 43.96 5.80
486 488 0.529378 CATGGCAGAAAACTGAGGCC 59.471 55.000 0.00 0.00 44.82 5.19
487 489 0.529378 CCATGGCAGAAAACTGAGGC 59.471 55.000 0.00 0.00 0.00 4.70
488 490 1.180029 CCCATGGCAGAAAACTGAGG 58.820 55.000 6.09 0.00 0.00 3.86
510 512 0.323908 CCATGGACCGGGCCTAAAAA 60.324 55.000 30.93 6.90 0.00 1.94
511 513 1.304952 CCATGGACCGGGCCTAAAA 59.695 57.895 30.93 7.40 0.00 1.52
512 514 3.003230 CCATGGACCGGGCCTAAA 58.997 61.111 30.93 7.89 0.00 1.85
513 515 3.804329 GCCATGGACCGGGCCTAA 61.804 66.667 30.93 8.89 44.53 2.69
518 520 1.492133 ATATCTGGCCATGGACCGGG 61.492 60.000 25.07 17.28 34.06 5.73
519 521 1.275666 TATATCTGGCCATGGACCGG 58.724 55.000 17.19 20.04 34.63 5.28
520 522 3.634397 AATATATCTGGCCATGGACCG 57.366 47.619 17.19 9.44 0.00 4.79
521 523 4.922206 TCAAATATATCTGGCCATGGACC 58.078 43.478 17.19 16.42 0.00 4.46
522 524 6.294731 GGTTTCAAATATATCTGGCCATGGAC 60.295 42.308 18.40 15.32 0.00 4.02
523 525 5.774690 GGTTTCAAATATATCTGGCCATGGA 59.225 40.000 18.40 0.00 0.00 3.41
524 526 5.539574 TGGTTTCAAATATATCTGGCCATGG 59.460 40.000 5.51 7.63 0.00 3.66
525 527 6.653526 TGGTTTCAAATATATCTGGCCATG 57.346 37.500 5.51 0.00 0.00 3.66
526 528 7.564660 TCTTTGGTTTCAAATATATCTGGCCAT 59.435 33.333 5.51 0.00 41.45 4.40
527 529 6.894654 TCTTTGGTTTCAAATATATCTGGCCA 59.105 34.615 4.71 4.71 41.45 5.36
528 530 7.346751 TCTTTGGTTTCAAATATATCTGGCC 57.653 36.000 0.00 0.00 41.45 5.36
529 531 9.822185 AATTCTTTGGTTTCAAATATATCTGGC 57.178 29.630 0.00 0.00 41.45 4.85
546 548 9.271828 AGGCAAGTTGTTTATAAAATTCTTTGG 57.728 29.630 4.48 0.00 0.00 3.28
554 556 9.092876 CAAAGTTCAGGCAAGTTGTTTATAAAA 57.907 29.630 4.48 0.00 0.00 1.52
565 567 5.594926 CTTTTCATCAAAGTTCAGGCAAGT 58.405 37.500 0.00 0.00 37.67 3.16
611 613 5.445845 AGTTCCGTAAACTTAAATTGTGCG 58.554 37.500 0.00 0.00 46.26 5.34
646 648 6.272318 TGAACTTCTGACGCAAATTGAATTT 58.728 32.000 0.00 0.00 0.00 1.82
647 649 5.830912 TGAACTTCTGACGCAAATTGAATT 58.169 33.333 0.00 0.00 0.00 2.17
648 650 5.437289 TGAACTTCTGACGCAAATTGAAT 57.563 34.783 0.00 0.00 0.00 2.57
649 651 4.891627 TGAACTTCTGACGCAAATTGAA 57.108 36.364 0.00 0.00 0.00 2.69
650 652 4.891627 TTGAACTTCTGACGCAAATTGA 57.108 36.364 0.00 0.00 0.00 2.57
651 653 7.801547 ATATTTGAACTTCTGACGCAAATTG 57.198 32.000 0.00 0.00 39.22 2.32
653 655 9.906660 TTTTATATTTGAACTTCTGACGCAAAT 57.093 25.926 0.00 0.00 40.84 2.32
715 765 8.466798 CATCTTATTACCCCCTTGTAAAACTTG 58.533 37.037 0.00 0.00 34.59 3.16
727 777 4.741928 AACCCATCATCTTATTACCCCC 57.258 45.455 0.00 0.00 0.00 5.40
728 778 5.454966 ACAAACCCATCATCTTATTACCCC 58.545 41.667 0.00 0.00 0.00 4.95
738 788 3.430453 TCTCCCAAACAAACCCATCATC 58.570 45.455 0.00 0.00 0.00 2.92
753 803 2.916269 TGACTCTCTCTTCTCTCTCCCA 59.084 50.000 0.00 0.00 0.00 4.37
756 806 5.185454 TGATGTGACTCTCTCTTCTCTCTC 58.815 45.833 0.00 0.00 0.00 3.20
758 808 4.201950 GCTGATGTGACTCTCTCTTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
760 810 3.181487 GGCTGATGTGACTCTCTCTTCTC 60.181 52.174 0.00 0.00 0.00 2.87
761 811 2.760092 GGCTGATGTGACTCTCTCTTCT 59.240 50.000 0.00 0.00 0.00 2.85
762 812 2.760092 AGGCTGATGTGACTCTCTCTTC 59.240 50.000 0.00 0.00 0.00 2.87
763 813 2.496871 CAGGCTGATGTGACTCTCTCTT 59.503 50.000 9.42 0.00 0.00 2.85
764 814 2.101783 CAGGCTGATGTGACTCTCTCT 58.898 52.381 9.42 0.00 0.00 3.10
765 815 1.824230 ACAGGCTGATGTGACTCTCTC 59.176 52.381 23.66 0.00 30.46 3.20
766 816 1.935799 ACAGGCTGATGTGACTCTCT 58.064 50.000 23.66 0.00 30.46 3.10
767 817 2.758736 AACAGGCTGATGTGACTCTC 57.241 50.000 23.66 0.00 32.52 3.20
768 818 3.498774 AAAACAGGCTGATGTGACTCT 57.501 42.857 23.66 0.00 32.52 3.24
799 849 0.599728 GATGTGCCTTGCCGCAAAAA 60.600 50.000 7.33 0.00 41.30 1.94
800 850 1.006337 GATGTGCCTTGCCGCAAAA 60.006 52.632 7.33 0.00 41.30 2.44
801 851 2.144833 CTGATGTGCCTTGCCGCAAA 62.145 55.000 7.33 0.00 41.30 3.68
802 852 2.596923 TGATGTGCCTTGCCGCAA 60.597 55.556 5.52 5.52 41.30 4.85
803 853 3.057548 CTGATGTGCCTTGCCGCA 61.058 61.111 0.00 0.00 36.08 5.69
804 854 4.487412 GCTGATGTGCCTTGCCGC 62.487 66.667 0.00 0.00 0.00 6.53
812 862 2.229543 TCAAATCAACAGGCTGATGTGC 59.770 45.455 23.66 0.00 39.84 4.57
813 863 3.668757 CGTCAAATCAACAGGCTGATGTG 60.669 47.826 23.66 13.91 40.91 3.21
814 864 2.485426 CGTCAAATCAACAGGCTGATGT 59.515 45.455 23.66 7.72 36.16 3.06
815 865 2.485426 ACGTCAAATCAACAGGCTGATG 59.515 45.455 23.66 20.42 36.16 3.07
816 866 2.485426 CACGTCAAATCAACAGGCTGAT 59.515 45.455 23.66 6.45 37.66 2.90
817 867 1.872952 CACGTCAAATCAACAGGCTGA 59.127 47.619 23.66 0.00 0.00 4.26
840 890 5.422012 TGCAAGTCAGATCAACTATCCTACA 59.578 40.000 0.00 0.00 34.90 2.74
842 892 6.519382 CATGCAAGTCAGATCAACTATCCTA 58.481 40.000 0.00 0.00 34.90 2.94
855 905 0.738975 CCATCCTGCATGCAAGTCAG 59.261 55.000 22.88 9.43 0.00 3.51
860 910 1.683025 CCACCCATCCTGCATGCAA 60.683 57.895 22.88 8.38 0.00 4.08
868 918 0.763223 GTATCCGGTCCACCCATCCT 60.763 60.000 0.00 0.00 0.00 3.24
894 945 1.476845 TTCCTAACTCACTGGGCGCA 61.477 55.000 10.83 2.47 0.00 6.09
895 946 0.321298 TTTCCTAACTCACTGGGCGC 60.321 55.000 0.00 0.00 0.00 6.53
896 947 2.178912 TTTTCCTAACTCACTGGGCG 57.821 50.000 0.00 0.00 0.00 6.13
919 970 2.094234 ACATATGTCGTGTGTAGCAGCA 60.094 45.455 1.41 0.00 29.51 4.41
921 972 3.306973 CCAACATATGTCGTGTGTAGCAG 59.693 47.826 9.23 0.00 31.28 4.24
922 973 3.056465 TCCAACATATGTCGTGTGTAGCA 60.056 43.478 9.23 0.00 31.28 3.49
923 974 3.306166 GTCCAACATATGTCGTGTGTAGC 59.694 47.826 9.23 0.00 31.28 3.58
924 975 3.546271 CGTCCAACATATGTCGTGTGTAG 59.454 47.826 9.23 0.00 31.28 2.74
925 976 3.190953 TCGTCCAACATATGTCGTGTGTA 59.809 43.478 9.23 0.00 31.28 2.90
951 1006 2.768833 TGATATGTACCGTCGTCTGC 57.231 50.000 0.00 0.00 0.00 4.26
960 1015 2.902705 TGGACGGCTTGATATGTACC 57.097 50.000 0.00 0.00 0.00 3.34
966 1021 0.529773 GACGCATGGACGGCTTGATA 60.530 55.000 0.00 0.00 38.32 2.15
984 1039 3.161866 GGCCCTGTCAAATTTTACCTGA 58.838 45.455 0.00 0.00 0.00 3.86
994 1049 0.960364 GATTGAGCGGCCCTGTCAAA 60.960 55.000 11.88 0.00 34.02 2.69
1021 1305 2.813179 CGCCAGCCGAACTATGCAC 61.813 63.158 0.00 0.00 40.02 4.57
1057 1346 5.632347 AGTGGATTTTGTCTACGAAACTACG 59.368 40.000 0.00 0.00 42.63 3.51
1058 1347 7.359849 GGAAGTGGATTTTGTCTACGAAACTAC 60.360 40.741 0.00 2.22 42.63 2.73
1061 1350 5.334646 GGGAAGTGGATTTTGTCTACGAAAC 60.335 44.000 0.00 0.00 42.63 2.78
1084 1373 0.530650 AGCTTACATGGCGATCGTGG 60.531 55.000 17.81 6.45 36.71 4.94
1085 1374 0.578683 CAGCTTACATGGCGATCGTG 59.421 55.000 17.81 9.82 38.32 4.35
1150 1441 1.978617 CGGAAAGTTGCATGGGCCT 60.979 57.895 4.53 0.00 40.13 5.19
1152 1443 1.508088 CTCGGAAAGTTGCATGGGC 59.492 57.895 0.00 0.00 41.68 5.36
1153 1444 0.322456 TCCTCGGAAAGTTGCATGGG 60.322 55.000 0.00 0.00 0.00 4.00
1182 1474 8.790718 CATTTCCCAAGAGGATGATAATACTTG 58.209 37.037 0.00 0.00 46.94 3.16
1222 1519 3.305629 GCTTTGTGCGAAGAGTCTCTATG 59.694 47.826 1.88 0.00 0.00 2.23
1240 1549 2.171003 AGCGGCTAAATTGAAGGCTTT 58.829 42.857 0.00 0.00 37.38 3.51
1258 1567 0.247460 GGCTGGGTGGAATTTGAAGC 59.753 55.000 0.00 0.00 0.00 3.86
1352 1694 3.567397 TGTAGGTTCTATCTCCTGAGCC 58.433 50.000 0.00 0.00 35.51 4.70
1385 1753 8.330466 ACATGGTCGATCAAAAGTATGTTTTA 57.670 30.769 0.60 0.00 0.00 1.52
1572 1940 2.578021 ACAGTTCATCAAGGCACCCTAT 59.422 45.455 0.00 0.00 31.13 2.57
1589 1957 2.158445 ACTCTCCACACTCCTGTACAGT 60.158 50.000 21.18 0.98 0.00 3.55
1597 1965 2.828520 TGATTGAGACTCTCCACACTCC 59.171 50.000 3.68 0.00 0.00 3.85
1601 1969 4.774200 TGATCTTGATTGAGACTCTCCACA 59.226 41.667 3.68 0.00 0.00 4.17
1636 2004 0.905809 AAGCATGGCCTTGCATTCCA 60.906 50.000 36.66 0.79 45.23 3.53
1640 2008 2.029623 CTAAGAAGCATGGCCTTGCAT 58.970 47.619 36.66 29.16 45.23 3.96
1691 4008 3.187637 CGTCAAATTTTACCTTGAGCCGA 59.812 43.478 0.00 0.00 32.36 5.54
1697 4014 8.240682 TGATTGGTATCGTCAAATTTTACCTTG 58.759 33.333 14.26 0.00 34.65 3.61
1904 4224 1.002430 CTTGTAGAAGCAGGAGCCACA 59.998 52.381 0.00 0.00 43.56 4.17
2090 4412 7.672983 ATAGATCAGAAGTTTTCTCGCAAAA 57.327 32.000 0.00 0.00 38.11 2.44
2091 4413 7.387673 TGAATAGATCAGAAGTTTTCTCGCAAA 59.612 33.333 0.00 0.00 38.11 3.68
2092 4414 6.873605 TGAATAGATCAGAAGTTTTCTCGCAA 59.126 34.615 0.00 0.00 38.11 4.85
2093 4415 6.398095 TGAATAGATCAGAAGTTTTCTCGCA 58.602 36.000 0.00 0.00 38.11 5.10
2094 4416 6.893958 TGAATAGATCAGAAGTTTTCTCGC 57.106 37.500 0.00 0.00 38.11 5.03
2095 4417 8.870160 AGATGAATAGATCAGAAGTTTTCTCG 57.130 34.615 0.00 0.00 42.53 4.04
2105 4427 9.486497 GCATTTTGTAGAGATGAATAGATCAGA 57.514 33.333 0.00 0.00 42.53 3.27
2106 4428 9.269453 TGCATTTTGTAGAGATGAATAGATCAG 57.731 33.333 0.00 0.00 42.53 2.90
2107 4429 9.617523 TTGCATTTTGTAGAGATGAATAGATCA 57.382 29.630 0.00 0.00 43.67 2.92
2109 4431 9.842775 TCTTGCATTTTGTAGAGATGAATAGAT 57.157 29.630 0.00 0.00 0.00 1.98
2110 4432 9.671279 TTCTTGCATTTTGTAGAGATGAATAGA 57.329 29.630 0.00 0.00 0.00 1.98
2113 4435 9.798994 GAATTCTTGCATTTTGTAGAGATGAAT 57.201 29.630 0.00 0.00 0.00 2.57
2114 4436 8.795513 TGAATTCTTGCATTTTGTAGAGATGAA 58.204 29.630 7.05 0.00 0.00 2.57
2115 4437 8.339344 TGAATTCTTGCATTTTGTAGAGATGA 57.661 30.769 7.05 0.00 0.00 2.92
2116 4438 9.582431 AATGAATTCTTGCATTTTGTAGAGATG 57.418 29.630 7.05 0.00 31.02 2.90
2117 4439 9.582431 CAATGAATTCTTGCATTTTGTAGAGAT 57.418 29.630 7.05 0.00 32.74 2.75
2118 4440 8.030692 CCAATGAATTCTTGCATTTTGTAGAGA 58.969 33.333 7.05 0.00 32.74 3.10
2119 4441 7.816031 ACCAATGAATTCTTGCATTTTGTAGAG 59.184 33.333 7.05 0.00 32.74 2.43
2120 4442 7.669427 ACCAATGAATTCTTGCATTTTGTAGA 58.331 30.769 7.05 0.00 32.74 2.59
2121 4443 7.894376 ACCAATGAATTCTTGCATTTTGTAG 57.106 32.000 7.05 0.00 32.74 2.74
2123 4445 9.369904 GTATACCAATGAATTCTTGCATTTTGT 57.630 29.630 7.05 1.93 32.74 2.83
2124 4446 8.819974 GGTATACCAATGAATTCTTGCATTTTG 58.180 33.333 17.44 0.00 32.74 2.44
2125 4447 7.706179 CGGTATACCAATGAATTCTTGCATTTT 59.294 33.333 21.76 0.00 32.74 1.82
2175 4497 5.288952 GGAGATCAGTACGTTCTTAAGCAAC 59.711 44.000 0.00 3.03 0.00 4.17
2493 4817 4.301637 TGCGCTCTCGTCAATATTTCTA 57.698 40.909 9.73 0.00 38.14 2.10
2616 4940 0.401738 TGAAGGCCAGACTTCTTGGG 59.598 55.000 14.18 0.00 45.49 4.12
2629 4953 1.610522 ACAGTTGAAGCATGTGAAGGC 59.389 47.619 0.00 0.00 0.00 4.35
2636 4960 0.587768 TGCACGACAGTTGAAGCATG 59.412 50.000 8.14 0.00 0.00 4.06
2702 5026 0.599558 TTCCGTGACAGTTACCTCCG 59.400 55.000 0.00 0.00 0.00 4.63
2707 5031 2.665052 GGTTCGATTCCGTGACAGTTAC 59.335 50.000 0.00 0.00 37.05 2.50
2715 5045 0.389426 ACTTCGGGTTCGATTCCGTG 60.389 55.000 21.10 17.63 45.51 4.94
2750 5080 3.056588 TGACATATGCTGTGCTGACAA 57.943 42.857 1.58 0.00 38.54 3.18
2753 5083 2.635714 CCTTGACATATGCTGTGCTGA 58.364 47.619 1.58 0.00 38.54 4.26
2851 5187 1.676678 TTCGGAATCCTAGCTGCGCT 61.677 55.000 9.73 8.09 43.41 5.92
2908 5244 1.006162 TGTGGGGTTAATTACCTGGGC 59.994 52.381 0.00 0.00 46.86 5.36
3006 5342 0.183492 TGCCAACAAGGAGAGCAACT 59.817 50.000 0.00 0.00 41.22 3.16
3007 5343 0.595095 CTGCCAACAAGGAGAGCAAC 59.405 55.000 0.00 0.00 41.22 4.17
3010 5346 0.538287 AACCTGCCAACAAGGAGAGC 60.538 55.000 0.00 0.00 41.22 4.09
3011 5347 1.072965 AGAACCTGCCAACAAGGAGAG 59.927 52.381 0.00 0.00 41.22 3.20
3091 5455 1.276421 AGGTGATGCGCTACTTCTTGT 59.724 47.619 9.73 0.00 0.00 3.16
3118 5483 2.037620 CTTCAGATCAGGAGGCCCCG 62.038 65.000 0.00 0.00 40.87 5.73
3123 5488 1.493861 TCTGGCTTCAGATCAGGAGG 58.506 55.000 0.00 0.00 42.13 4.30
3144 5509 5.125417 TGATGGTATCTTCATCGATCGCATA 59.875 40.000 11.09 0.00 42.73 3.14
3163 5528 8.915036 AGTATTAGTAAACTAGACTGGTGATGG 58.085 37.037 0.00 0.00 30.22 3.51
3164 5529 9.737427 CAGTATTAGTAAACTAGACTGGTGATG 57.263 37.037 18.01 2.81 38.83 3.07
3166 5531 8.874744 ACAGTATTAGTAAACTAGACTGGTGA 57.125 34.615 23.96 0.14 42.46 4.02
3167 5532 9.570488 GAACAGTATTAGTAAACTAGACTGGTG 57.430 37.037 23.96 11.29 40.85 4.17
3197 5562 6.205464 CGAGGCAGTTCCAACATTATTCATAT 59.795 38.462 0.00 0.00 37.29 1.78
3222 5588 5.086104 TGATACCAAGAGCAAAGAGGTAC 57.914 43.478 0.00 0.00 37.63 3.34
3225 5591 4.521146 ACATGATACCAAGAGCAAAGAGG 58.479 43.478 0.00 0.00 0.00 3.69
3235 5601 8.084684 TCTATTCATTCGAGACATGATACCAAG 58.915 37.037 0.00 0.00 30.63 3.61
3236 5602 7.951591 TCTATTCATTCGAGACATGATACCAA 58.048 34.615 0.00 0.00 30.63 3.67
3285 5651 2.293399 GGCATAAATAAAGCAGGTCCCG 59.707 50.000 0.00 0.00 0.00 5.14
3287 5653 2.293399 CGGGCATAAATAAAGCAGGTCC 59.707 50.000 0.00 0.00 0.00 4.46
3301 5667 1.745232 AAGCAATCGAAACGGGCATA 58.255 45.000 0.00 0.00 0.00 3.14
3341 5707 8.978539 GTGAAATAACCAATGAAGAGGAAAAAC 58.021 33.333 0.00 0.00 0.00 2.43
3346 5712 7.286546 TGTTTGTGAAATAACCAATGAAGAGGA 59.713 33.333 0.00 0.00 0.00 3.71
3349 5715 9.258826 CAATGTTTGTGAAATAACCAATGAAGA 57.741 29.630 0.00 0.00 0.00 2.87
3389 5755 8.600625 GCCTTTTTGTTCTAAAAAGTACTTTGG 58.399 33.333 21.22 13.43 42.59 3.28
3396 5762 7.836842 TCTCAAGCCTTTTTGTTCTAAAAAGT 58.163 30.769 18.19 4.11 42.59 2.66
3408 5774 3.077359 CGGACTCATCTCAAGCCTTTTT 58.923 45.455 0.00 0.00 0.00 1.94
3409 5775 2.616510 CCGGACTCATCTCAAGCCTTTT 60.617 50.000 0.00 0.00 0.00 2.27
3418 5784 6.315393 TGTTTATTTAAAGCCGGACTCATCTC 59.685 38.462 5.05 0.00 0.00 2.75
3435 5801 9.878599 CTAGTTGATTGACGACTTTGTTTATTT 57.121 29.630 0.00 0.00 42.58 1.40
3439 5805 5.820947 ACCTAGTTGATTGACGACTTTGTTT 59.179 36.000 0.00 0.00 42.58 2.83
3465 5831 2.357075 TGCAAGTTGGTGTTTCACGTA 58.643 42.857 4.75 0.00 34.83 3.57
3466 5832 1.169577 TGCAAGTTGGTGTTTCACGT 58.830 45.000 4.75 0.00 34.83 4.49
3473 5859 3.088532 TCTTCTGTTTGCAAGTTGGTGT 58.911 40.909 4.75 0.00 0.00 4.16
3474 5860 3.781079 TCTTCTGTTTGCAAGTTGGTG 57.219 42.857 4.75 0.00 0.00 4.17
3475 5861 4.799564 TTTCTTCTGTTTGCAAGTTGGT 57.200 36.364 4.75 0.00 0.00 3.67
3476 5862 5.868801 TCTTTTTCTTCTGTTTGCAAGTTGG 59.131 36.000 4.75 0.00 0.00 3.77
3477 5863 6.949578 TCTTTTTCTTCTGTTTGCAAGTTG 57.050 33.333 0.00 0.00 0.00 3.16
3478 5864 7.961325 TTTCTTTTTCTTCTGTTTGCAAGTT 57.039 28.000 0.00 0.00 0.00 2.66
3479 5865 7.961325 TTTTCTTTTTCTTCTGTTTGCAAGT 57.039 28.000 0.00 0.00 0.00 3.16
3480 5866 8.711457 TCTTTTTCTTTTTCTTCTGTTTGCAAG 58.289 29.630 0.00 0.00 0.00 4.01
3481 5867 8.600449 TCTTTTTCTTTTTCTTCTGTTTGCAA 57.400 26.923 0.00 0.00 0.00 4.08
3482 5868 8.600449 TTCTTTTTCTTTTTCTTCTGTTTGCA 57.400 26.923 0.00 0.00 0.00 4.08
3483 5869 9.877137 TTTTCTTTTTCTTTTTCTTCTGTTTGC 57.123 25.926 0.00 0.00 0.00 3.68
3492 5878 9.087424 CGTCCTCATTTTTCTTTTTCTTTTTCT 57.913 29.630 0.00 0.00 0.00 2.52
3493 5879 7.846107 GCGTCCTCATTTTTCTTTTTCTTTTTC 59.154 33.333 0.00 0.00 0.00 2.29
3494 5880 7.333174 TGCGTCCTCATTTTTCTTTTTCTTTTT 59.667 29.630 0.00 0.00 0.00 1.94
3499 5885 5.051039 GGTTGCGTCCTCATTTTTCTTTTTC 60.051 40.000 0.00 0.00 0.00 2.29
3500 5886 4.808895 GGTTGCGTCCTCATTTTTCTTTTT 59.191 37.500 0.00 0.00 0.00 1.94
3506 5892 0.966179 GGGGTTGCGTCCTCATTTTT 59.034 50.000 0.00 0.00 0.00 1.94
3517 5903 2.684001 TCTATACTGTTGGGGTTGCG 57.316 50.000 0.00 0.00 0.00 4.85
3531 5917 7.172868 TGTTTGTGGTCCGTTATCTTCTATA 57.827 36.000 0.00 0.00 0.00 1.31
3532 5918 6.045072 TGTTTGTGGTCCGTTATCTTCTAT 57.955 37.500 0.00 0.00 0.00 1.98
3533 5919 5.471556 TGTTTGTGGTCCGTTATCTTCTA 57.528 39.130 0.00 0.00 0.00 2.10
3534 5920 4.345859 TGTTTGTGGTCCGTTATCTTCT 57.654 40.909 0.00 0.00 0.00 2.85
3535 5921 5.237779 TCTTTGTTTGTGGTCCGTTATCTTC 59.762 40.000 0.00 0.00 0.00 2.87
3573 5975 0.899019 TGGCAATGTGATGCTGCATT 59.101 45.000 17.36 0.00 45.68 3.56
3579 5981 2.585263 GCGAATGGCAATGTGATGC 58.415 52.632 0.00 0.00 45.67 3.91
3638 6040 4.713735 TGCGGCGCCCTTCAATCA 62.714 61.111 30.82 3.60 0.00 2.57
3676 6078 1.669760 GACCATTGTTCGTGGGCGA 60.670 57.895 0.00 0.00 46.36 5.54
3677 6079 2.867472 GACCATTGTTCGTGGGCG 59.133 61.111 0.00 0.00 41.14 6.13
3678 6080 1.369625 CTAGACCATTGTTCGTGGGC 58.630 55.000 0.00 0.00 45.58 5.36
3693 6097 9.462174 CAACATTTTGTTTATTTGTCAGCTAGA 57.538 29.630 0.00 0.00 38.77 2.43
3721 6125 0.250553 TCTTGGTAAGGTGGTTGCGG 60.251 55.000 0.00 0.00 0.00 5.69
3733 6137 2.173519 CCGTGGGTAGTCTTCTTGGTA 58.826 52.381 0.00 0.00 0.00 3.25
3742 6146 1.202498 GGCATTAGTCCGTGGGTAGTC 60.202 57.143 0.00 0.00 0.00 2.59
3756 6160 2.653726 GTGATGTGGGTGATGGCATTA 58.346 47.619 0.00 0.00 0.00 1.90
3764 6168 1.134431 CATGATCCGTGATGTGGGTGA 60.134 52.381 0.00 0.00 0.00 4.02
3783 6187 4.801330 TCTCATTCCTAAAGCTTCGACA 57.199 40.909 0.00 0.00 0.00 4.35
3823 6234 3.665871 GCTTTGTTGCTCAATTCTTCGAC 59.334 43.478 0.00 0.00 35.84 4.20
3824 6235 3.304659 GGCTTTGTTGCTCAATTCTTCGA 60.305 43.478 0.00 0.00 35.84 3.71
3849 6260 2.520982 CGGCTCCGACCCATCCTA 60.521 66.667 1.35 0.00 42.83 2.94
3869 6280 0.382158 TGATGAGCGATCGTGGTCTC 59.618 55.000 17.81 14.43 37.28 3.36
3889 6300 2.492881 GGTGACAATGATGCAATGGTGA 59.507 45.455 0.00 0.00 0.00 4.02
3902 6313 2.028385 GGGAACACTCTACGGTGACAAT 60.028 50.000 1.52 0.00 40.13 2.71
3910 6321 2.364647 GGGGAATAGGGAACACTCTACG 59.635 54.545 0.00 0.00 0.00 3.51
3943 6354 1.728971 CGACAGGTCAATGCTCTTGAC 59.271 52.381 18.69 18.69 45.89 3.18
3945 6356 2.084610 TCGACAGGTCAATGCTCTTG 57.915 50.000 0.00 0.00 0.00 3.02
3952 6363 4.023193 GTCCATTTTGTTCGACAGGTCAAT 60.023 41.667 0.00 0.00 0.00 2.57
3969 6380 0.320374 TCTTCTTCGTGCGGTCCATT 59.680 50.000 0.00 0.00 0.00 3.16
3970 6381 0.320374 TTCTTCTTCGTGCGGTCCAT 59.680 50.000 0.00 0.00 0.00 3.41
3977 6388 0.158928 CGTCGTGTTCTTCTTCGTGC 59.841 55.000 0.00 0.00 0.00 5.34
3997 6408 1.071857 GGTTTGGTTTCCTCCTCGACT 59.928 52.381 0.00 0.00 0.00 4.18
4040 6451 4.285863 TGGTGGAGGTGTTTTTCATTTCT 58.714 39.130 0.00 0.00 0.00 2.52
4055 6466 1.669115 CCGTGTGCTTCTGGTGGAG 60.669 63.158 0.00 0.00 0.00 3.86
4063 6474 0.380378 TTGCTTGTTCCGTGTGCTTC 59.620 50.000 0.00 0.00 0.00 3.86
4064 6475 0.100503 GTTGCTTGTTCCGTGTGCTT 59.899 50.000 0.00 0.00 0.00 3.91
4072 6483 1.067060 GTGTGGGAAGTTGCTTGTTCC 59.933 52.381 0.00 3.65 41.47 3.62
4095 6506 0.536233 GTATGTGTGGGTGTGTGCCA 60.536 55.000 0.00 0.00 0.00 4.92
4097 6508 1.573829 CGGTATGTGTGGGTGTGTGC 61.574 60.000 0.00 0.00 0.00 4.57
4116 6527 3.676093 CCTCCTTGGAGGTAGTGTTTTC 58.324 50.000 23.92 0.00 36.53 2.29
4158 6569 3.774599 ATCCTTGGAATCGGGCGGC 62.775 63.158 0.00 0.00 0.00 6.53
4164 6575 2.717639 ACCCTCAATCCTTGGAATCG 57.282 50.000 0.00 0.00 0.00 3.34
4165 6576 4.772100 TGAAAACCCTCAATCCTTGGAATC 59.228 41.667 0.00 0.00 0.00 2.52
4166 6577 4.528206 GTGAAAACCCTCAATCCTTGGAAT 59.472 41.667 0.00 0.00 0.00 3.01
4172 6583 3.500343 CAAGGTGAAAACCCTCAATCCT 58.500 45.455 0.00 0.00 0.00 3.24
4173 6584 2.562738 CCAAGGTGAAAACCCTCAATCC 59.437 50.000 0.00 0.00 0.00 3.01
4174 6585 3.230976 ACCAAGGTGAAAACCCTCAATC 58.769 45.455 0.00 0.00 0.00 2.67
4175 6586 3.328535 ACCAAGGTGAAAACCCTCAAT 57.671 42.857 0.00 0.00 0.00 2.57
4176 6587 2.838637 ACCAAGGTGAAAACCCTCAA 57.161 45.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.