Multiple sequence alignment - TraesCS2D01G433800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G433800 chr2D 100.000 5265 0 0 1 5265 545028273 545033537 0.000000e+00 9723.0
1 TraesCS2D01G433800 chr2B 91.305 4129 172 68 686 4718 651920714 651924751 0.000000e+00 5463.0
2 TraesCS2D01G433800 chr2B 86.382 749 62 14 1 726 651919956 651920687 0.000000e+00 782.0
3 TraesCS2D01G433800 chr2B 89.130 414 13 14 4836 5225 651924833 651925238 2.200000e-133 486.0
4 TraesCS2D01G433800 chr2A 91.438 4041 176 77 750 4692 688244799 688240831 0.000000e+00 5389.0
5 TraesCS2D01G433800 chr2A 88.496 452 27 14 4836 5265 688240615 688240167 1.680000e-144 523.0
6 TraesCS2D01G433800 chr6A 93.182 176 11 1 2 177 297665185 297665011 1.880000e-64 257.0
7 TraesCS2D01G433800 chr7B 93.143 175 11 1 2 176 392754559 392754732 6.770000e-64 255.0
8 TraesCS2D01G433800 chr4B 93.143 175 11 1 2 176 70598886 70599059 6.770000e-64 255.0
9 TraesCS2D01G433800 chr4B 93.143 175 11 1 2 176 413806884 413807057 6.770000e-64 255.0
10 TraesCS2D01G433800 chr5D 92.614 176 12 1 2 177 141436588 141436414 8.750000e-63 252.0
11 TraesCS2D01G433800 chr3D 92.614 176 12 1 2 177 2370839 2371013 8.750000e-63 252.0
12 TraesCS2D01G433800 chr1D 92.614 176 12 1 2 177 197534398 197534224 8.750000e-63 252.0
13 TraesCS2D01G433800 chr7A 91.713 181 14 1 2 182 323460651 323460830 3.150000e-62 250.0
14 TraesCS2D01G433800 chr7D 79.402 301 39 13 290 580 261127513 261127800 1.940000e-44 191.0
15 TraesCS2D01G433800 chr5A 84.270 89 9 3 190 273 485897645 485897733 1.220000e-11 82.4
16 TraesCS2D01G433800 chr5A 83.146 89 10 3 190 273 485932077 485932165 5.650000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G433800 chr2D 545028273 545033537 5264 False 9723.000000 9723 100.000 1 5265 1 chr2D.!!$F1 5264
1 TraesCS2D01G433800 chr2B 651919956 651925238 5282 False 2243.666667 5463 88.939 1 5225 3 chr2B.!!$F1 5224
2 TraesCS2D01G433800 chr2A 688240167 688244799 4632 True 2956.000000 5389 89.967 750 5265 2 chr2A.!!$R1 4515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.036010 AGTCCCGATGCTTCACCAAG 60.036 55.0 0.08 0.0 0.00 3.61 F
1608 1745 0.109179 TTACGGCGAGCATTGTACGT 60.109 50.0 16.62 0.0 38.41 3.57 F
2184 2330 0.741326 TGCTCTCGTACCATCTCAGC 59.259 55.0 0.00 0.0 0.00 4.26 F
4059 4259 0.038983 TCTTCGCGACGACATTTGGA 60.039 50.0 9.15 0.0 34.89 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2312 0.317436 CGCTGAGATGGTACGAGAGC 60.317 60.000 0.0 0.0 0.00 4.09 R
2483 2638 2.171448 CTGAGTAAACTGGGATGGAGGG 59.829 54.545 0.0 0.0 0.00 4.30 R
4128 4328 0.173481 CGATTCCAAGGAGTCGCAGA 59.827 55.000 18.8 0.0 44.63 4.26 R
4967 5309 0.887836 TCACACTAGCTGTCGTCCGT 60.888 55.000 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.984230 TTGTGCCCTAGGAGTTCTGG 59.016 55.000 11.48 0.00 0.00 3.86
83 84 2.223157 GCCTCTAGAGCGATATGTAGCG 60.223 54.545 14.73 0.00 38.61 4.26
94 95 1.072391 TATGTAGCGCAACACGTTGG 58.928 50.000 11.47 3.57 46.11 3.77
107 108 1.260561 CACGTTGGAGTTGTTCCTTCG 59.739 52.381 0.00 8.24 46.92 3.79
108 109 0.865769 CGTTGGAGTTGTTCCTTCGG 59.134 55.000 0.00 0.00 46.92 4.30
114 115 1.947456 GAGTTGTTCCTTCGGCACTTT 59.053 47.619 0.00 0.00 0.00 2.66
115 116 1.676006 AGTTGTTCCTTCGGCACTTTG 59.324 47.619 0.00 0.00 0.00 2.77
116 117 1.404035 GTTGTTCCTTCGGCACTTTGT 59.596 47.619 0.00 0.00 0.00 2.83
117 118 1.021202 TGTTCCTTCGGCACTTTGTG 58.979 50.000 0.00 0.00 36.51 3.33
118 119 1.021968 GTTCCTTCGGCACTTTGTGT 58.978 50.000 0.00 0.00 35.75 3.72
137 138 2.424956 TGTTGTACACATTGTTGCAGCA 59.575 40.909 0.00 0.00 0.00 4.41
140 141 2.948315 TGTACACATTGTTGCAGCAAGA 59.052 40.909 20.82 3.94 0.00 3.02
146 147 1.985473 TTGTTGCAGCAAGATGGAGT 58.015 45.000 12.36 0.00 0.00 3.85
164 165 3.477530 GAGTTGCTCCTACACAACCTTT 58.522 45.455 2.47 0.00 45.79 3.11
165 166 4.504340 GGAGTTGCTCCTACACAACCTTTA 60.504 45.833 7.86 0.00 46.41 1.85
205 206 2.609459 CGATGGTGCAATGTAGGAGTTC 59.391 50.000 0.00 0.00 0.00 3.01
226 227 5.461032 TCCTCAACTCTCTCTTTGTCTTC 57.539 43.478 0.00 0.00 0.00 2.87
227 228 4.895889 TCCTCAACTCTCTCTTTGTCTTCA 59.104 41.667 0.00 0.00 0.00 3.02
246 247 5.300539 TCTTCATGGTTTTCGGTGATCAAAA 59.699 36.000 0.00 0.00 0.00 2.44
275 276 6.374613 CCAAGGATTTTCTGTAGTTTACCCTC 59.625 42.308 0.00 0.00 0.00 4.30
288 289 0.325296 TACCCTCAGTCCCGATGCTT 60.325 55.000 0.00 0.00 0.00 3.91
292 293 0.460987 CTCAGTCCCGATGCTTCACC 60.461 60.000 0.08 0.00 0.00 4.02
293 294 1.191489 TCAGTCCCGATGCTTCACCA 61.191 55.000 0.08 0.00 0.00 4.17
294 295 0.321564 CAGTCCCGATGCTTCACCAA 60.322 55.000 0.08 0.00 0.00 3.67
295 296 0.036010 AGTCCCGATGCTTCACCAAG 60.036 55.000 0.08 0.00 0.00 3.61
296 297 1.026718 GTCCCGATGCTTCACCAAGG 61.027 60.000 0.08 0.00 0.00 3.61
311 312 4.081420 TCACCAAGGATCTCTAAAGCACTC 60.081 45.833 0.00 0.00 0.00 3.51
316 317 6.183361 CCAAGGATCTCTAAAGCACTCCTAAT 60.183 42.308 0.00 0.00 32.89 1.73
334 335 1.562672 ATGAACTCAAGGTCCGGGGG 61.563 60.000 0.00 0.00 0.00 5.40
340 341 2.285144 AAGGTCCGGGGGTGTAGG 60.285 66.667 0.00 0.00 0.00 3.18
354 355 2.206750 GTGTAGGCTTGACGAACAACA 58.793 47.619 0.00 0.00 34.56 3.33
362 363 2.317530 TGACGAACAACACCACATCA 57.682 45.000 0.00 0.00 0.00 3.07
365 366 3.067106 GACGAACAACACCACATCATCT 58.933 45.455 0.00 0.00 0.00 2.90
382 383 6.589139 ACATCATCTGTGCATATTGATAGTCG 59.411 38.462 8.18 1.58 36.48 4.18
390 391 3.120286 GCATATTGATAGTCGCTGTGTCG 59.880 47.826 0.00 0.00 0.00 4.35
391 392 1.560923 ATTGATAGTCGCTGTGTCGC 58.439 50.000 0.00 0.00 0.00 5.19
398 399 2.507102 CGCTGTGTCGCCGAGATT 60.507 61.111 0.00 0.00 0.00 2.40
429 430 1.072806 TGCTCAACACTCCAGATTGCT 59.927 47.619 0.00 0.00 0.00 3.91
434 435 3.008375 TCAACACTCCAGATTGCTTAGCT 59.992 43.478 5.60 0.00 0.00 3.32
435 436 3.710209 ACACTCCAGATTGCTTAGCTT 57.290 42.857 5.60 0.00 0.00 3.74
450 451 6.650120 TGCTTAGCTTTAGTTACAATAGCCT 58.350 36.000 5.60 0.00 32.36 4.58
451 452 7.788026 TGCTTAGCTTTAGTTACAATAGCCTA 58.212 34.615 5.60 0.00 32.36 3.93
452 453 7.709613 TGCTTAGCTTTAGTTACAATAGCCTAC 59.290 37.037 5.60 0.00 32.36 3.18
453 454 7.709613 GCTTAGCTTTAGTTACAATAGCCTACA 59.290 37.037 0.00 0.00 32.36 2.74
454 455 9.595823 CTTAGCTTTAGTTACAATAGCCTACAA 57.404 33.333 0.00 0.00 32.36 2.41
476 477 4.766970 CGTGAGGATCTCCATGGC 57.233 61.111 6.96 0.00 38.89 4.40
479 480 0.249657 GTGAGGATCTCCATGGCGAC 60.250 60.000 6.57 1.33 38.89 5.19
488 489 2.444624 CCATGGCGACGACGAACAG 61.445 63.158 12.29 3.81 42.66 3.16
496 497 1.446907 GACGACGAACAGTAGAGGGA 58.553 55.000 0.00 0.00 0.00 4.20
510 520 1.975680 AGAGGGAAGACTTGGCGTAAA 59.024 47.619 0.00 0.00 0.00 2.01
516 526 4.067192 GGAAGACTTGGCGTAAACCTTTA 58.933 43.478 0.00 0.00 0.00 1.85
535 545 5.337813 CCTTTAGCATGCCAAATTCTCCTTT 60.338 40.000 15.66 0.00 0.00 3.11
536 546 3.881937 AGCATGCCAAATTCTCCTTTC 57.118 42.857 15.66 0.00 0.00 2.62
551 561 1.679032 CCTTTCCGGGACTCCATTGAC 60.679 57.143 0.00 0.00 0.00 3.18
588 598 2.552315 CGAGGTTTGTAACAATGTGGCT 59.448 45.455 0.00 0.00 0.00 4.75
616 626 1.626321 TGAGAAGTGGGCCAATCGTAA 59.374 47.619 8.40 0.00 0.00 3.18
617 627 2.238646 TGAGAAGTGGGCCAATCGTAAT 59.761 45.455 8.40 0.00 0.00 1.89
618 628 2.614057 GAGAAGTGGGCCAATCGTAATG 59.386 50.000 8.40 0.00 0.00 1.90
647 669 1.262824 CCGAGCGCGAGAATTACGAG 61.263 60.000 12.10 6.35 40.82 4.18
653 675 0.299003 GCGAGAATTACGAGTGCAGC 59.701 55.000 8.38 0.00 0.00 5.25
664 686 0.674895 GAGTGCAGCGAAGACCCAAT 60.675 55.000 0.00 0.00 0.00 3.16
1255 1387 0.322906 CCCCAAGGTCTGCTTTCCTC 60.323 60.000 0.00 0.00 33.09 3.71
1322 1458 2.412605 CCTGATTAAGGCTGCCTGC 58.587 57.895 24.16 12.59 39.93 4.85
1340 1476 4.731612 CTGCTGCCTGACGACGCT 62.732 66.667 0.00 0.00 0.00 5.07
1341 1477 4.299547 TGCTGCCTGACGACGCTT 62.300 61.111 0.00 0.00 0.00 4.68
1342 1478 3.782244 GCTGCCTGACGACGCTTG 61.782 66.667 0.00 0.00 0.00 4.01
1408 1544 3.777925 CTGACGGGCAAGTTCGCG 61.778 66.667 0.00 0.00 46.01 5.87
1560 1697 5.147162 CGCATTTCGCTTTCTTAGTTTCTT 58.853 37.500 0.00 0.00 39.08 2.52
1561 1698 6.304126 CGCATTTCGCTTTCTTAGTTTCTTA 58.696 36.000 0.00 0.00 39.08 2.10
1562 1699 6.961554 CGCATTTCGCTTTCTTAGTTTCTTAT 59.038 34.615 0.00 0.00 39.08 1.73
1605 1742 1.855978 CGATTTACGGCGAGCATTGTA 59.144 47.619 16.62 0.00 38.46 2.41
1606 1743 2.347292 CGATTTACGGCGAGCATTGTAC 60.347 50.000 16.62 0.00 38.46 2.90
1607 1744 0.993532 TTTACGGCGAGCATTGTACG 59.006 50.000 16.62 0.00 0.00 3.67
1608 1745 0.109179 TTACGGCGAGCATTGTACGT 60.109 50.000 16.62 0.00 38.41 3.57
1784 1921 1.978617 CATGCCCTTCCCGCAGTTT 60.979 57.895 0.00 0.00 40.15 2.66
1940 2085 4.055360 TGACACTTACTTTGTCATCGTGG 58.945 43.478 1.05 0.00 46.64 4.94
2161 2307 5.581605 CAGTTTTGCTCAAGTTACATGTGT 58.418 37.500 9.11 0.00 0.00 3.72
2166 2312 3.312146 TGCTCAAGTTACATGTGTGTGTG 59.688 43.478 9.11 3.83 39.39 3.82
2183 2329 1.745653 TGTGCTCTCGTACCATCTCAG 59.254 52.381 0.00 0.00 0.00 3.35
2184 2330 0.741326 TGCTCTCGTACCATCTCAGC 59.259 55.000 0.00 0.00 0.00 4.26
2285 2437 7.494211 TGTCACTTGCTTGACTTTAGTTAGTA 58.506 34.615 12.81 0.00 45.34 1.82
2286 2438 7.437267 TGTCACTTGCTTGACTTTAGTTAGTAC 59.563 37.037 12.81 0.00 45.34 2.73
2287 2439 7.652507 GTCACTTGCTTGACTTTAGTTAGTACT 59.347 37.037 0.00 0.00 42.36 2.73
2485 2640 8.519799 TCAATGATTCTTTATTTGGTACTCCC 57.480 34.615 0.00 0.00 0.00 4.30
2487 2642 8.624776 CAATGATTCTTTATTTGGTACTCCCTC 58.375 37.037 0.00 0.00 0.00 4.30
2488 2643 6.659824 TGATTCTTTATTTGGTACTCCCTCC 58.340 40.000 0.00 0.00 0.00 4.30
2489 2644 6.216662 TGATTCTTTATTTGGTACTCCCTCCA 59.783 38.462 0.00 0.00 0.00 3.86
2490 2645 6.652205 TTCTTTATTTGGTACTCCCTCCAT 57.348 37.500 0.00 0.00 33.50 3.41
2491 2646 6.248569 TCTTTATTTGGTACTCCCTCCATC 57.751 41.667 0.00 0.00 33.50 3.51
2492 2647 5.132144 TCTTTATTTGGTACTCCCTCCATCC 59.868 44.000 0.00 0.00 33.50 3.51
2493 2648 1.591768 TTTGGTACTCCCTCCATCCC 58.408 55.000 0.00 0.00 33.50 3.85
2513 2668 5.690865 TCCCAGTTTACTCAGATGTTTTGT 58.309 37.500 0.00 0.00 0.00 2.83
2694 2849 6.889722 ACTAAGCAATTTAGGACTAATGGCAA 59.110 34.615 0.00 0.00 42.57 4.52
2698 2853 7.623630 AGCAATTTAGGACTAATGGCAAAATT 58.376 30.769 0.00 0.00 0.00 1.82
2998 3154 3.325425 TCAACCCAAGTAACATCGAAGGA 59.675 43.478 0.00 0.00 0.00 3.36
3095 3251 9.553064 GAGATCTGATGTGGTATGTTCTATTTT 57.447 33.333 0.00 0.00 0.00 1.82
3156 3312 2.994186 TATACAAAGGGGGAAGCGTC 57.006 50.000 0.00 0.00 0.00 5.19
3257 3413 9.606631 GAAACAGTCAATATCTTCCTAATCACT 57.393 33.333 0.00 0.00 0.00 3.41
3259 3415 6.989169 ACAGTCAATATCTTCCTAATCACTGC 59.011 38.462 0.00 0.00 32.48 4.40
3371 3528 2.026449 AGGAGCTCTCTTGGACCAATTG 60.026 50.000 14.64 3.88 0.00 2.32
3413 3570 4.346730 TCTCCTAGAAACATCCACCGTAA 58.653 43.478 0.00 0.00 0.00 3.18
3452 3609 9.125026 AGACTTATTTATTATGGCAAACAGAGG 57.875 33.333 0.00 0.00 0.00 3.69
3468 3625 5.350504 ACAGAGGAGATGAGGTTATGTTG 57.649 43.478 0.00 0.00 0.00 3.33
3548 3724 6.071728 ACTCATTGCAAAAGAGGGTAAATGAG 60.072 38.462 26.35 20.39 45.35 2.90
3597 3773 3.041946 CTCTACCAAAGCCCTCCAGTAT 58.958 50.000 0.00 0.00 0.00 2.12
3625 3801 7.892445 ATTTTCATTTACATCATCGCGTAAC 57.108 32.000 5.77 0.00 0.00 2.50
3684 3866 9.383519 GTGAAATTGTGATTGAGAGACCTATTA 57.616 33.333 0.00 0.00 0.00 0.98
3715 3897 6.980978 ACATTGATAGAGGTCGAATGTAGTTG 59.019 38.462 0.00 0.00 35.89 3.16
3724 3906 5.703592 AGGTCGAATGTAGTTGCATTGTAAA 59.296 36.000 0.06 0.00 38.98 2.01
3759 3941 6.592607 CCATTTCTCTTTGATGTTTCCCAATG 59.407 38.462 0.00 0.00 0.00 2.82
3762 3944 4.022068 TCTCTTTGATGTTTCCCAATGCAC 60.022 41.667 0.00 0.00 0.00 4.57
3773 3955 6.014755 TGTTTCCCAATGCACTCAATCAAATA 60.015 34.615 0.00 0.00 0.00 1.40
3815 4009 7.551974 CACAGTTTCTCATATGACCTTGATTCT 59.448 37.037 0.00 0.00 0.00 2.40
4059 4259 0.038983 TCTTCGCGACGACATTTGGA 60.039 50.000 9.15 0.00 34.89 3.53
4105 4305 3.594134 CCCGCTCCATCTCTAATCAATC 58.406 50.000 0.00 0.00 0.00 2.67
4106 4306 3.260380 CCCGCTCCATCTCTAATCAATCT 59.740 47.826 0.00 0.00 0.00 2.40
4107 4307 4.464244 CCCGCTCCATCTCTAATCAATCTA 59.536 45.833 0.00 0.00 0.00 1.98
4108 4308 5.047021 CCCGCTCCATCTCTAATCAATCTAA 60.047 44.000 0.00 0.00 0.00 2.10
4110 4310 6.756074 CCGCTCCATCTCTAATCAATCTAATC 59.244 42.308 0.00 0.00 0.00 1.75
4111 4311 6.756074 CGCTCCATCTCTAATCAATCTAATCC 59.244 42.308 0.00 0.00 0.00 3.01
4112 4312 7.363705 CGCTCCATCTCTAATCAATCTAATCCT 60.364 40.741 0.00 0.00 0.00 3.24
4133 4333 7.076842 TCCTTTTCTTTCTTTATGATCTGCG 57.923 36.000 0.00 0.00 0.00 5.18
4201 4401 1.555533 GGTTTCACCTTCGGGAGAGAT 59.444 52.381 0.00 0.00 41.75 2.75
4212 4412 2.217510 GGGAGAGATACCGATGCCTA 57.782 55.000 0.00 0.00 0.00 3.93
4225 4425 4.082523 GCCTACGGCCACAGCTCA 62.083 66.667 2.24 0.00 44.06 4.26
4298 4500 1.799258 AAGCAGTTCAAAGCAGCCGG 61.799 55.000 0.00 0.00 0.00 6.13
4373 4575 1.153066 TGACCGGCAAGCAAGAACA 60.153 52.632 0.00 0.00 0.00 3.18
4423 4629 5.509498 AGGCAATAGCATAGAGGTGAAAAA 58.491 37.500 0.00 0.00 44.61 1.94
4424 4630 6.131961 AGGCAATAGCATAGAGGTGAAAAAT 58.868 36.000 0.00 0.00 44.61 1.82
4456 4662 4.778415 CCGTCGCCGACAGTCCTG 62.778 72.222 18.40 0.00 35.63 3.86
4478 4684 2.355363 CGTGGTGAAACGCCGAGA 60.355 61.111 0.00 0.00 38.12 4.04
4479 4685 2.654912 CGTGGTGAAACGCCGAGAC 61.655 63.158 0.00 0.00 38.12 3.36
4565 4773 3.565214 TGGCGTGACCACCACCAT 61.565 61.111 5.70 0.00 46.36 3.55
4597 4832 0.109342 CAGAAAGGGCACAGTGGAGT 59.891 55.000 1.84 0.00 0.00 3.85
4678 4918 7.777910 TCTTCTCACCTTGAATAAAGTTTCCAA 59.222 33.333 0.00 0.00 33.66 3.53
4681 4921 5.596361 TCACCTTGAATAAAGTTTCCAAGCA 59.404 36.000 14.74 4.28 33.66 3.91
4749 5050 2.026641 CATATGGCAAACTCCTGGTGG 58.973 52.381 0.00 0.00 0.00 4.61
4750 5051 1.072266 TATGGCAAACTCCTGGTGGT 58.928 50.000 0.00 0.00 34.23 4.16
4755 5056 0.890996 CAAACTCCTGGTGGTGAGCC 60.891 60.000 0.33 0.00 31.65 4.70
4765 5066 2.343758 GGTGAGCCAGCGTCTCAA 59.656 61.111 7.08 0.00 41.66 3.02
4777 5078 4.539870 CAGCGTCTCAAAATCAAATGTGT 58.460 39.130 0.00 0.00 0.00 3.72
4778 5079 4.977963 CAGCGTCTCAAAATCAAATGTGTT 59.022 37.500 0.00 0.00 0.00 3.32
4781 5082 7.167302 CAGCGTCTCAAAATCAAATGTGTTAAA 59.833 33.333 0.00 0.00 0.00 1.52
4782 5083 7.867403 AGCGTCTCAAAATCAAATGTGTTAAAT 59.133 29.630 0.00 0.00 0.00 1.40
4783 5084 9.123709 GCGTCTCAAAATCAAATGTGTTAAATA 57.876 29.630 0.00 0.00 0.00 1.40
4948 5281 4.746535 TCAGCCCAGTAAAACGATGATA 57.253 40.909 0.00 0.00 0.00 2.15
4952 5285 6.027749 CAGCCCAGTAAAACGATGATAAAAC 58.972 40.000 0.00 0.00 0.00 2.43
4953 5286 5.944007 AGCCCAGTAAAACGATGATAAAACT 59.056 36.000 0.00 0.00 0.00 2.66
4954 5287 6.027749 GCCCAGTAAAACGATGATAAAACTG 58.972 40.000 0.00 0.00 34.33 3.16
4955 5288 6.027749 CCCAGTAAAACGATGATAAAACTGC 58.972 40.000 0.00 0.00 33.44 4.40
4958 5291 4.759516 AAAACGATGATAAAACTGCGGT 57.240 36.364 0.00 0.00 0.00 5.68
4959 5292 3.740044 AACGATGATAAAACTGCGGTG 57.260 42.857 0.00 0.00 0.00 4.94
4960 5293 1.396996 ACGATGATAAAACTGCGGTGC 59.603 47.619 0.00 0.00 0.00 5.01
5057 5408 2.882137 TGGGCAGAAAAGTAAGAAACGG 59.118 45.455 0.00 0.00 0.00 4.44
5244 5615 3.238241 CGTCGTCGTTGCTAGGCG 61.238 66.667 0.00 0.00 0.00 5.52
5245 5616 3.542742 GTCGTCGTTGCTAGGCGC 61.543 66.667 0.00 0.00 39.77 6.53
5263 5634 4.996434 GCGGCGGGATGATGGAGG 62.996 72.222 9.78 0.00 0.00 4.30
5264 5635 4.996434 CGGCGGGATGATGGAGGC 62.996 72.222 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.339151 CCAGAACTCCTAGGGCACAAC 60.339 57.143 9.46 0.00 0.00 3.32
28 29 1.831580 AGGGCAGCAAGAGTTCAATC 58.168 50.000 0.00 0.00 0.00 2.67
78 79 1.219522 ACTCCAACGTGTTGCGCTAC 61.220 55.000 15.28 15.28 46.11 3.58
83 84 1.533129 GGAACAACTCCAACGTGTTGC 60.533 52.381 14.39 3.02 43.91 4.17
116 117 2.424956 TGCTGCAACAATGTGTACAACA 59.575 40.909 0.00 0.00 44.79 3.33
117 118 3.077229 TGCTGCAACAATGTGTACAAC 57.923 42.857 0.00 0.00 0.00 3.32
118 119 3.379688 TCTTGCTGCAACAATGTGTACAA 59.620 39.130 11.69 0.00 0.00 2.41
131 132 2.260247 GCAACTCCATCTTGCTGCA 58.740 52.632 0.00 0.00 40.79 4.41
146 147 3.756434 GCATAAAGGTTGTGTAGGAGCAA 59.244 43.478 0.00 0.00 0.00 3.91
154 155 3.221771 TGAAGCAGCATAAAGGTTGTGT 58.778 40.909 0.00 0.00 0.00 3.72
159 160 4.095483 CGATTTCTGAAGCAGCATAAAGGT 59.905 41.667 0.00 0.00 0.00 3.50
164 165 1.942657 GGCGATTTCTGAAGCAGCATA 59.057 47.619 12.55 0.00 0.00 3.14
165 166 0.737219 GGCGATTTCTGAAGCAGCAT 59.263 50.000 12.55 0.00 0.00 3.79
205 206 5.207110 TGAAGACAAAGAGAGAGTTGAGG 57.793 43.478 0.00 0.00 0.00 3.86
226 227 5.345741 GTGATTTTGATCACCGAAAACCATG 59.654 40.000 8.04 0.00 43.75 3.66
227 228 5.469479 GTGATTTTGATCACCGAAAACCAT 58.531 37.500 8.04 0.00 43.75 3.55
246 247 7.393515 GGTAAACTACAGAAAATCCTTGGTGAT 59.606 37.037 0.00 0.00 0.00 3.06
251 252 6.940298 TGAGGGTAAACTACAGAAAATCCTTG 59.060 38.462 0.00 0.00 0.00 3.61
254 255 6.473758 ACTGAGGGTAAACTACAGAAAATCC 58.526 40.000 0.00 0.00 33.53 3.01
261 262 2.165845 CGGGACTGAGGGTAAACTACAG 59.834 54.545 0.00 0.00 35.14 2.74
275 276 0.321564 TTGGTGAAGCATCGGGACTG 60.322 55.000 0.00 0.00 0.00 3.51
288 289 3.840666 AGTGCTTTAGAGATCCTTGGTGA 59.159 43.478 0.00 0.00 0.00 4.02
292 293 4.751767 AGGAGTGCTTTAGAGATCCTTG 57.248 45.455 0.00 0.00 31.59 3.61
293 294 6.613271 TCATTAGGAGTGCTTTAGAGATCCTT 59.387 38.462 7.23 0.00 35.11 3.36
294 295 6.139671 TCATTAGGAGTGCTTTAGAGATCCT 58.860 40.000 0.00 7.14 36.47 3.24
295 296 6.412362 TCATTAGGAGTGCTTTAGAGATCC 57.588 41.667 0.00 0.00 0.00 3.36
296 297 7.496747 AGTTCATTAGGAGTGCTTTAGAGATC 58.503 38.462 0.00 0.00 0.00 2.75
302 303 6.173339 CCTTGAGTTCATTAGGAGTGCTTTA 58.827 40.000 0.00 0.00 0.00 1.85
311 312 2.420129 CCCGGACCTTGAGTTCATTAGG 60.420 54.545 0.73 0.00 31.70 2.69
316 317 2.221299 CCCCCGGACCTTGAGTTCA 61.221 63.158 0.73 0.00 0.00 3.18
334 335 2.033151 GTGTTGTTCGTCAAGCCTACAC 60.033 50.000 0.00 0.00 36.66 2.90
340 341 0.730265 TGTGGTGTTGTTCGTCAAGC 59.270 50.000 0.00 0.00 36.66 4.01
342 343 2.633488 TGATGTGGTGTTGTTCGTCAA 58.367 42.857 0.00 0.00 0.00 3.18
362 363 4.928020 CAGCGACTATCAATATGCACAGAT 59.072 41.667 0.00 0.00 0.00 2.90
365 366 3.803778 CACAGCGACTATCAATATGCACA 59.196 43.478 0.00 0.00 0.00 4.57
369 370 3.120286 GCGACACAGCGACTATCAATATG 59.880 47.826 0.00 0.00 0.00 1.78
378 379 4.406173 CTCGGCGACACAGCGACT 62.406 66.667 4.99 0.00 37.09 4.18
380 381 2.867333 GAATCTCGGCGACACAGCGA 62.867 60.000 4.99 0.04 38.18 4.93
382 383 0.807667 ATGAATCTCGGCGACACAGC 60.808 55.000 4.99 0.00 0.00 4.40
390 391 2.032549 GCACATACACATGAATCTCGGC 60.033 50.000 0.00 0.00 35.96 5.54
391 392 3.461061 AGCACATACACATGAATCTCGG 58.539 45.455 0.00 0.00 35.96 4.63
424 425 7.775561 AGGCTATTGTAACTAAAGCTAAGCAAT 59.224 33.333 0.00 0.00 33.67 3.56
434 435 9.316730 CGGTTATTGTAGGCTATTGTAACTAAA 57.683 33.333 17.52 0.00 0.00 1.85
435 436 8.477256 ACGGTTATTGTAGGCTATTGTAACTAA 58.523 33.333 17.52 2.77 0.00 2.24
450 451 4.283337 TGGAGATCCTCACGGTTATTGTA 58.717 43.478 0.00 0.00 36.82 2.41
451 452 3.104512 TGGAGATCCTCACGGTTATTGT 58.895 45.455 0.00 0.00 36.82 2.71
452 453 3.819564 TGGAGATCCTCACGGTTATTG 57.180 47.619 0.00 0.00 36.82 1.90
453 454 3.071602 CCATGGAGATCCTCACGGTTATT 59.928 47.826 5.56 0.00 36.82 1.40
454 455 2.634940 CCATGGAGATCCTCACGGTTAT 59.365 50.000 5.56 0.00 36.82 1.89
455 456 2.039418 CCATGGAGATCCTCACGGTTA 58.961 52.381 5.56 0.00 36.82 2.85
456 457 0.833287 CCATGGAGATCCTCACGGTT 59.167 55.000 5.56 0.00 36.82 4.44
457 458 1.690219 GCCATGGAGATCCTCACGGT 61.690 60.000 18.40 0.00 36.82 4.83
458 459 1.070445 GCCATGGAGATCCTCACGG 59.930 63.158 18.40 0.00 36.82 4.94
459 460 1.300465 CGCCATGGAGATCCTCACG 60.300 63.158 18.40 1.52 36.82 4.35
467 468 2.337246 TTCGTCGTCGCCATGGAGA 61.337 57.895 18.40 16.54 36.96 3.71
470 471 2.431771 TGTTCGTCGTCGCCATGG 60.432 61.111 7.63 7.63 36.96 3.66
474 475 0.520827 CTCTACTGTTCGTCGTCGCC 60.521 60.000 0.00 0.00 36.96 5.54
476 477 0.096628 CCCTCTACTGTTCGTCGTCG 59.903 60.000 0.00 0.00 38.55 5.12
479 480 2.082231 TCTTCCCTCTACTGTTCGTCG 58.918 52.381 0.00 0.00 0.00 5.12
488 489 0.896226 ACGCCAAGTCTTCCCTCTAC 59.104 55.000 0.00 0.00 0.00 2.59
496 497 3.501062 GCTAAAGGTTTACGCCAAGTCTT 59.499 43.478 0.00 0.00 0.00 3.01
510 520 3.448660 GGAGAATTTGGCATGCTAAAGGT 59.551 43.478 29.27 21.17 30.32 3.50
516 526 2.498885 GGAAAGGAGAATTTGGCATGCT 59.501 45.455 18.92 0.00 0.00 3.79
535 545 1.229368 TGGTCAATGGAGTCCCGGA 60.229 57.895 0.73 0.00 34.29 5.14
536 546 1.078426 GTGGTCAATGGAGTCCCGG 60.078 63.158 6.74 0.00 34.29 5.73
551 561 1.873863 TCGAGCACGAGTGTAGTGG 59.126 57.895 0.88 0.00 43.81 4.00
607 617 2.213499 GTGGGCTCTCATTACGATTGG 58.787 52.381 0.00 0.00 0.00 3.16
616 626 3.474570 GCTCGGGTGGGCTCTCAT 61.475 66.667 0.00 0.00 0.00 2.90
647 669 1.448985 TAATTGGGTCTTCGCTGCAC 58.551 50.000 0.00 0.00 0.00 4.57
727 780 5.062809 CGTAATCTTCACTGCTCTCCTTTTC 59.937 44.000 0.00 0.00 0.00 2.29
1255 1387 4.715130 TGTCGGGAGGTGGAGGGG 62.715 72.222 0.00 0.00 0.00 4.79
1323 1459 4.731612 AGCGTCGTCAGGCAGCAG 62.732 66.667 0.00 0.00 35.75 4.24
1324 1460 4.299547 AAGCGTCGTCAGGCAGCA 62.300 61.111 0.00 0.00 35.75 4.41
1325 1461 3.782244 CAAGCGTCGTCAGGCAGC 61.782 66.667 0.00 0.00 35.75 5.25
1560 1697 5.012046 ACCAATCGACCAATCAGAGCATATA 59.988 40.000 0.00 0.00 0.00 0.86
1561 1698 4.202398 ACCAATCGACCAATCAGAGCATAT 60.202 41.667 0.00 0.00 0.00 1.78
1562 1699 3.134623 ACCAATCGACCAATCAGAGCATA 59.865 43.478 0.00 0.00 0.00 3.14
1605 1742 4.057428 GAGCGGCCAGACAGACGT 62.057 66.667 2.24 0.00 0.00 4.34
1606 1743 4.803426 GGAGCGGCCAGACAGACG 62.803 72.222 2.24 0.00 36.34 4.18
1607 1744 3.695606 TGGAGCGGCCAGACAGAC 61.696 66.667 2.24 0.00 43.33 3.51
2155 2301 1.721389 GTACGAGAGCACACACACATG 59.279 52.381 0.00 0.00 0.00 3.21
2161 2307 1.472878 GAGATGGTACGAGAGCACACA 59.527 52.381 0.00 0.00 38.68 3.72
2166 2312 0.317436 CGCTGAGATGGTACGAGAGC 60.317 60.000 0.00 0.00 0.00 4.09
2183 2329 2.000429 TCTAGTTTCCGTTAAGGCGC 58.000 50.000 0.00 0.00 40.77 6.53
2184 2330 4.996062 TTTTCTAGTTTCCGTTAAGGCG 57.004 40.909 0.00 0.00 40.77 5.52
2221 2367 9.886132 CAATTACCTCTTTGTACAGTATAACCT 57.114 33.333 0.00 0.00 0.00 3.50
2222 2368 9.662947 ACAATTACCTCTTTGTACAGTATAACC 57.337 33.333 0.00 0.00 34.42 2.85
2270 2422 9.545928 TTATGGGGTAGTACTAACTAAAGTCAA 57.454 33.333 17.33 1.36 39.90 3.18
2285 2437 9.487442 ACAACATCAAATTTATTATGGGGTAGT 57.513 29.630 10.41 0.00 0.00 2.73
2306 2458 6.909550 AAATCCACAGGCTATTTTACAACA 57.090 33.333 0.00 0.00 0.00 3.33
2481 2636 2.436173 GAGTAAACTGGGATGGAGGGAG 59.564 54.545 0.00 0.00 0.00 4.30
2483 2638 2.171448 CTGAGTAAACTGGGATGGAGGG 59.829 54.545 0.00 0.00 0.00 4.30
2484 2639 3.107601 TCTGAGTAAACTGGGATGGAGG 58.892 50.000 0.00 0.00 0.00 4.30
2485 2640 4.163078 ACATCTGAGTAAACTGGGATGGAG 59.837 45.833 18.13 0.00 36.62 3.86
2487 2642 4.494091 ACATCTGAGTAAACTGGGATGG 57.506 45.455 18.13 7.59 36.62 3.51
2488 2643 6.207417 ACAAAACATCTGAGTAAACTGGGATG 59.793 38.462 14.88 14.88 37.47 3.51
2489 2644 6.306987 ACAAAACATCTGAGTAAACTGGGAT 58.693 36.000 0.00 0.00 0.00 3.85
2490 2645 5.690865 ACAAAACATCTGAGTAAACTGGGA 58.309 37.500 0.00 0.00 0.00 4.37
2491 2646 6.263168 AGAACAAAACATCTGAGTAAACTGGG 59.737 38.462 0.00 0.00 0.00 4.45
2492 2647 7.134815 CAGAACAAAACATCTGAGTAAACTGG 58.865 38.462 0.00 0.00 44.64 4.00
2493 2648 7.697691 ACAGAACAAAACATCTGAGTAAACTG 58.302 34.615 9.56 0.00 44.64 3.16
2513 2668 2.290071 GCAAGTGGGCCTAAGTACAGAA 60.290 50.000 4.53 0.00 0.00 3.02
2619 2774 9.507329 GGCATATGAACAGAAATAGAAAGGATA 57.493 33.333 6.97 0.00 0.00 2.59
2720 2875 8.815912 ACAAAATCAAGGGCTAACATAAGAAAT 58.184 29.630 0.00 0.00 0.00 2.17
2998 3154 2.533266 ACATTGAGAACGCTGACAGT 57.467 45.000 3.99 0.00 0.00 3.55
3095 3251 7.201785 GCTCGGATTTGAAAAATGGATAGGTTA 60.202 37.037 0.00 0.00 0.00 2.85
3257 3413 4.589216 AAGCATGCAAAACTCTTAAGCA 57.411 36.364 21.98 0.00 39.79 3.91
3371 3528 7.044798 AGGAGATTGAATGTAACTCAACTAGC 58.955 38.462 0.00 0.00 0.00 3.42
3452 3609 9.167311 ACAATAACTTCAACATAACCTCATCTC 57.833 33.333 0.00 0.00 0.00 2.75
3468 3625 6.212888 TCTCCGGGTAGTAACAATAACTTC 57.787 41.667 0.00 0.00 0.00 3.01
3517 3674 3.568538 CTCTTTTGCAATGAGTTTCGGG 58.431 45.455 17.00 0.00 0.00 5.14
3528 3704 6.015772 GGTTACTCATTTACCCTCTTTTGCAA 60.016 38.462 0.00 0.00 0.00 4.08
3548 3724 3.732212 ACACGGAAACTGGTTAGGTTAC 58.268 45.455 0.00 0.00 32.89 2.50
3597 3773 7.860613 ACGCGATGATGTAAATGAAAATATCA 58.139 30.769 15.93 0.00 43.67 2.15
3616 3792 2.352814 GCCTATCATGGAGTTACGCGAT 60.353 50.000 15.93 0.00 0.00 4.58
3620 3796 3.685139 ATGGCCTATCATGGAGTTACG 57.315 47.619 3.32 0.00 0.00 3.18
3625 3801 4.330250 CCAACTTATGGCCTATCATGGAG 58.670 47.826 3.32 0.00 43.80 3.86
3684 3866 5.598416 TCGACCTCTATCAATGTCATGTT 57.402 39.130 0.00 0.00 0.00 2.71
3715 3897 9.860898 AGAAATGGACTTCTTATTTTACAATGC 57.139 29.630 0.00 0.00 31.39 3.56
3724 3906 9.525826 ACATCAAAGAGAAATGGACTTCTTATT 57.474 29.630 0.00 0.00 35.76 1.40
4059 4259 2.887151 AACCTAGCCACAGAAGCAAT 57.113 45.000 0.00 0.00 0.00 3.56
4107 4307 8.186821 CGCAGATCATAAAGAAAGAAAAGGATT 58.813 33.333 0.00 0.00 0.00 3.01
4108 4308 7.554118 TCGCAGATCATAAAGAAAGAAAAGGAT 59.446 33.333 0.00 0.00 0.00 3.24
4110 4310 6.963805 GTCGCAGATCATAAAGAAAGAAAAGG 59.036 38.462 0.00 0.00 40.67 3.11
4111 4311 7.746929 AGTCGCAGATCATAAAGAAAGAAAAG 58.253 34.615 0.00 0.00 40.67 2.27
4112 4312 7.148407 GGAGTCGCAGATCATAAAGAAAGAAAA 60.148 37.037 0.00 0.00 40.67 2.29
4116 4316 5.355596 AGGAGTCGCAGATCATAAAGAAAG 58.644 41.667 0.00 0.00 40.67 2.62
4117 4317 5.344743 AGGAGTCGCAGATCATAAAGAAA 57.655 39.130 0.00 0.00 40.67 2.52
4120 4320 3.806521 CCAAGGAGTCGCAGATCATAAAG 59.193 47.826 0.00 0.00 40.67 1.85
4121 4321 3.450817 TCCAAGGAGTCGCAGATCATAAA 59.549 43.478 0.00 0.00 40.67 1.40
4123 4323 2.666317 TCCAAGGAGTCGCAGATCATA 58.334 47.619 0.00 0.00 40.67 2.15
4128 4328 0.173481 CGATTCCAAGGAGTCGCAGA 59.827 55.000 18.80 0.00 44.63 4.26
4130 4330 4.910956 CGATTCCAAGGAGTCGCA 57.089 55.556 18.80 0.00 44.63 5.10
4133 4333 1.137282 GGAGACCGATTCCAAGGAGTC 59.863 57.143 1.79 1.79 34.74 3.36
4217 4417 1.064906 AGAATCCATGGGTGAGCTGTG 60.065 52.381 13.02 0.00 0.00 3.66
4225 4425 2.776536 CTCCTTCAGAGAATCCATGGGT 59.223 50.000 13.02 0.00 46.50 4.51
4274 4476 0.386476 TGCTTTGAACTGCTTGCTGG 59.614 50.000 4.64 0.00 0.00 4.85
4314 4516 3.261137 AGTGCTTTCCTGGTTCCTACTAC 59.739 47.826 0.00 0.00 0.00 2.73
4373 4575 0.754587 TTTTTACCACGGCCCGGTTT 60.755 50.000 16.38 0.00 37.99 3.27
4423 4629 0.322187 ACGGCGTGCCCTTCTTAAAT 60.322 50.000 13.76 0.00 0.00 1.40
4424 4630 0.952010 GACGGCGTGCCCTTCTTAAA 60.952 55.000 21.19 0.00 0.00 1.52
4587 4822 3.181495 GCTGCTACTACTACTCCACTGTG 60.181 52.174 0.00 0.00 0.00 3.66
4597 4832 9.967451 AATAGAATAGATCTGCTGCTACTACTA 57.033 33.333 5.18 0.00 39.30 1.82
4718 5019 7.721399 AGGAGTTTGCCATATGGAGTAATAAAG 59.279 37.037 26.47 0.00 37.39 1.85
4721 5022 6.465751 CCAGGAGTTTGCCATATGGAGTAATA 60.466 42.308 26.47 0.83 37.39 0.98
4723 5024 4.385199 CCAGGAGTTTGCCATATGGAGTAA 60.385 45.833 26.47 13.39 37.39 2.24
4724 5025 3.136443 CCAGGAGTTTGCCATATGGAGTA 59.864 47.826 26.47 7.79 37.39 2.59
4725 5026 2.092212 CCAGGAGTTTGCCATATGGAGT 60.092 50.000 26.47 7.48 37.39 3.85
4726 5027 2.092212 ACCAGGAGTTTGCCATATGGAG 60.092 50.000 26.47 0.00 37.39 3.86
4728 5029 2.026641 CACCAGGAGTTTGCCATATGG 58.973 52.381 18.07 18.07 38.53 2.74
4729 5030 2.026641 CCACCAGGAGTTTGCCATATG 58.973 52.381 0.00 0.00 36.89 1.78
4730 5031 1.640670 ACCACCAGGAGTTTGCCATAT 59.359 47.619 0.00 0.00 38.69 1.78
4731 5032 1.072266 ACCACCAGGAGTTTGCCATA 58.928 50.000 0.00 0.00 38.69 2.74
4732 5033 0.540365 CACCACCAGGAGTTTGCCAT 60.540 55.000 0.00 0.00 38.69 4.40
4733 5034 1.152777 CACCACCAGGAGTTTGCCA 60.153 57.895 0.00 0.00 38.69 4.92
4734 5035 0.890996 CTCACCACCAGGAGTTTGCC 60.891 60.000 0.00 0.00 38.69 4.52
4735 5036 1.518903 GCTCACCACCAGGAGTTTGC 61.519 60.000 0.00 0.00 38.69 3.68
4736 5037 0.890996 GGCTCACCACCAGGAGTTTG 60.891 60.000 0.00 0.00 38.69 2.93
4737 5038 1.352622 TGGCTCACCACCAGGAGTTT 61.353 55.000 0.00 0.00 42.67 2.66
4738 5039 1.770110 TGGCTCACCACCAGGAGTT 60.770 57.895 0.00 0.00 42.67 3.01
4749 5050 1.129437 GATTTTGAGACGCTGGCTCAC 59.871 52.381 12.71 0.03 41.72 3.51
4750 5051 1.270785 TGATTTTGAGACGCTGGCTCA 60.271 47.619 9.61 9.61 40.41 4.26
4755 5056 4.539870 ACACATTTGATTTTGAGACGCTG 58.460 39.130 0.00 0.00 0.00 5.18
4781 5082 9.941325 TGCCTAAACAAACAAAAATGATCATAT 57.059 25.926 9.04 0.00 0.00 1.78
4782 5083 9.421806 CTGCCTAAACAAACAAAAATGATCATA 57.578 29.630 9.04 0.00 0.00 2.15
4783 5084 8.149647 TCTGCCTAAACAAACAAAAATGATCAT 58.850 29.630 1.18 1.18 0.00 2.45
4784 5085 7.495901 TCTGCCTAAACAAACAAAAATGATCA 58.504 30.769 0.00 0.00 0.00 2.92
4785 5086 7.945033 TCTGCCTAAACAAACAAAAATGATC 57.055 32.000 0.00 0.00 0.00 2.92
4786 5087 8.203485 TCTTCTGCCTAAACAAACAAAAATGAT 58.797 29.630 0.00 0.00 0.00 2.45
4787 5088 7.551585 TCTTCTGCCTAAACAAACAAAAATGA 58.448 30.769 0.00 0.00 0.00 2.57
4788 5089 7.769272 TCTTCTGCCTAAACAAACAAAAATG 57.231 32.000 0.00 0.00 0.00 2.32
4825 5126 2.945890 GCCTCCCATCCCTTTTACTGTG 60.946 54.545 0.00 0.00 0.00 3.66
4958 5291 3.986006 GTCGTCCGTCCACCTGCA 61.986 66.667 0.00 0.00 0.00 4.41
4959 5292 3.916392 CTGTCGTCCGTCCACCTGC 62.916 68.421 0.00 0.00 0.00 4.85
4960 5293 2.258591 CTGTCGTCCGTCCACCTG 59.741 66.667 0.00 0.00 0.00 4.00
4967 5309 0.887836 TCACACTAGCTGTCGTCCGT 60.888 55.000 0.00 0.00 0.00 4.69
5146 5512 3.288308 CTCTGCCACGCGACCTTCT 62.288 63.158 15.93 0.00 0.00 2.85
5167 5533 2.181975 CTGGATTGATTTTGGGTGGCT 58.818 47.619 0.00 0.00 0.00 4.75
5246 5617 4.996434 CCTCCATCATCCCGCCGC 62.996 72.222 0.00 0.00 0.00 6.53
5247 5618 4.996434 GCCTCCATCATCCCGCCG 62.996 72.222 0.00 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.