Multiple sequence alignment - TraesCS2D01G433600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G433600 chr2D 100.000 3208 0 0 1 3208 545008582 545005375 0.000000e+00 5925
1 TraesCS2D01G433600 chr2B 89.940 1998 107 44 589 2530 651732248 651730289 0.000000e+00 2490
2 TraesCS2D01G433600 chr2B 85.493 710 44 17 2537 3207 651728034 651727345 0.000000e+00 686
3 TraesCS2D01G433600 chr2A 87.796 2155 131 66 589 2638 688419615 688421742 0.000000e+00 2401
4 TraesCS2D01G433600 chr2A 88.560 507 21 9 2730 3208 688423106 688423603 5.970000e-162 580
5 TraesCS2D01G433600 chr4D 87.821 468 46 10 86 548 397672594 397672133 3.640000e-149 538
6 TraesCS2D01G433600 chr4D 84.726 347 48 5 73 419 411559977 411559636 3.060000e-90 342
7 TraesCS2D01G433600 chr5D 87.527 465 50 7 86 547 475836663 475837122 6.090000e-147 531
8 TraesCS2D01G433600 chr7A 86.722 482 51 12 73 548 694038416 694038890 1.020000e-144 523
9 TraesCS2D01G433600 chr7A 86.797 462 50 9 86 542 564349057 564349512 3.690000e-139 505
10 TraesCS2D01G433600 chr5B 83.958 480 66 10 73 547 371389504 371389031 1.760000e-122 449
11 TraesCS2D01G433600 chr6A 82.571 459 72 7 95 547 599651666 599652122 6.450000e-107 398
12 TraesCS2D01G433600 chr3D 81.646 474 80 6 73 542 466743470 466743940 1.400000e-103 387
13 TraesCS2D01G433600 chr7D 81.781 483 57 17 73 550 158754783 158755239 3.020000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G433600 chr2D 545005375 545008582 3207 True 5925.0 5925 100.0000 1 3208 1 chr2D.!!$R1 3207
1 TraesCS2D01G433600 chr2B 651727345 651732248 4903 True 1588.0 2490 87.7165 589 3207 2 chr2B.!!$R1 2618
2 TraesCS2D01G433600 chr2A 688419615 688423603 3988 False 1490.5 2401 88.1780 589 3208 2 chr2A.!!$F1 2619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.040646 ATGGTCAGTACCTCGGGTCA 59.959 55.0 0.0 0.0 46.91 4.02 F
163 164 0.040646 TGGTCAGTACCTCGGGTCAT 59.959 55.0 0.0 0.0 46.91 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2248 0.036010 ACCAGGTGCTCGGATCTTTG 60.036 55.0 0.0 0.0 0.0 2.77 R
2241 2358 1.084289 GTCCCCAACACGAGCATAAC 58.916 55.0 0.0 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.767255 GAGCGGGCTCCACTGGTG 62.767 72.222 9.52 0.00 37.11 4.17
21 22 3.640407 GGGCTCCACTGGTGCAGA 61.640 66.667 20.94 0.00 43.12 4.26
22 23 2.673523 GGCTCCACTGGTGCAGAT 59.326 61.111 20.94 0.00 43.12 2.90
23 24 1.001641 GGCTCCACTGGTGCAGATT 60.002 57.895 20.94 0.00 43.12 2.40
24 25 0.253044 GGCTCCACTGGTGCAGATTA 59.747 55.000 20.94 0.00 43.12 1.75
25 26 1.133976 GGCTCCACTGGTGCAGATTAT 60.134 52.381 20.94 0.00 43.12 1.28
26 27 2.104792 GGCTCCACTGGTGCAGATTATA 59.895 50.000 20.94 0.00 43.12 0.98
27 28 3.134458 GCTCCACTGGTGCAGATTATAC 58.866 50.000 15.84 0.00 41.27 1.47
28 29 3.432186 GCTCCACTGGTGCAGATTATACA 60.432 47.826 15.84 0.00 41.27 2.29
29 30 4.744867 GCTCCACTGGTGCAGATTATACAT 60.745 45.833 15.84 0.00 41.27 2.29
30 31 5.511373 GCTCCACTGGTGCAGATTATACATA 60.511 44.000 15.84 0.00 41.27 2.29
31 32 6.493189 TCCACTGGTGCAGATTATACATAA 57.507 37.500 0.00 0.00 35.18 1.90
32 33 6.894682 TCCACTGGTGCAGATTATACATAAA 58.105 36.000 0.00 0.00 35.18 1.40
33 34 7.517320 TCCACTGGTGCAGATTATACATAAAT 58.483 34.615 0.00 0.00 35.18 1.40
34 35 8.655901 TCCACTGGTGCAGATTATACATAAATA 58.344 33.333 0.00 0.00 35.18 1.40
35 36 9.283768 CCACTGGTGCAGATTATACATAAATAA 57.716 33.333 0.00 0.00 35.18 1.40
59 60 8.915871 AAATGATGTGCATACAGAAAATACAC 57.084 30.769 0.00 0.00 40.79 2.90
60 61 7.870509 ATGATGTGCATACAGAAAATACACT 57.129 32.000 0.00 0.00 40.79 3.55
61 62 8.962884 ATGATGTGCATACAGAAAATACACTA 57.037 30.769 0.00 0.00 40.79 2.74
62 63 8.785329 TGATGTGCATACAGAAAATACACTAA 57.215 30.769 0.00 0.00 40.79 2.24
63 64 8.882736 TGATGTGCATACAGAAAATACACTAAG 58.117 33.333 0.00 0.00 40.79 2.18
64 65 7.609760 TGTGCATACAGAAAATACACTAAGG 57.390 36.000 0.00 0.00 31.91 2.69
65 66 6.093495 TGTGCATACAGAAAATACACTAAGGC 59.907 38.462 0.00 0.00 31.91 4.35
66 67 6.093495 GTGCATACAGAAAATACACTAAGGCA 59.907 38.462 0.00 0.00 0.00 4.75
67 68 6.828273 TGCATACAGAAAATACACTAAGGCAT 59.172 34.615 0.00 0.00 0.00 4.40
68 69 7.134815 GCATACAGAAAATACACTAAGGCATG 58.865 38.462 0.00 0.00 0.00 4.06
69 70 7.201732 GCATACAGAAAATACACTAAGGCATGT 60.202 37.037 0.00 0.00 0.00 3.21
70 71 6.500684 ACAGAAAATACACTAAGGCATGTG 57.499 37.500 0.00 3.62 39.80 3.21
77 78 4.778213 ACACTAAGGCATGTGTATCCAT 57.222 40.909 8.09 0.00 44.40 3.41
78 79 4.454678 ACACTAAGGCATGTGTATCCATG 58.545 43.478 8.09 0.00 44.40 3.66
79 80 4.080356 ACACTAAGGCATGTGTATCCATGT 60.080 41.667 8.09 0.00 44.40 3.21
80 81 5.130311 ACACTAAGGCATGTGTATCCATGTA 59.870 40.000 8.09 0.00 44.40 2.29
81 82 5.698089 CACTAAGGCATGTGTATCCATGTAG 59.302 44.000 0.00 0.96 43.33 2.74
82 83 5.602561 ACTAAGGCATGTGTATCCATGTAGA 59.397 40.000 0.00 0.00 43.33 2.59
83 84 5.573380 AAGGCATGTGTATCCATGTAGAT 57.427 39.130 0.00 0.00 43.33 1.98
84 85 4.903054 AGGCATGTGTATCCATGTAGATG 58.097 43.478 0.00 0.00 43.33 2.90
104 105 2.364972 GGGGGTTTGTCCTATGATGG 57.635 55.000 0.00 0.00 36.25 3.51
105 106 1.133482 GGGGGTTTGTCCTATGATGGG 60.133 57.143 0.00 0.00 36.25 4.00
106 107 1.692411 GGGTTTGTCCTATGATGGGC 58.308 55.000 0.00 0.00 36.25 5.36
107 108 1.308998 GGTTTGTCCTATGATGGGCG 58.691 55.000 0.00 0.00 33.69 6.13
108 109 1.408266 GGTTTGTCCTATGATGGGCGT 60.408 52.381 0.00 0.00 33.69 5.68
109 110 1.670811 GTTTGTCCTATGATGGGCGTG 59.329 52.381 0.00 0.00 33.69 5.34
110 111 0.908910 TTGTCCTATGATGGGCGTGT 59.091 50.000 0.00 0.00 33.69 4.49
111 112 0.908910 TGTCCTATGATGGGCGTGTT 59.091 50.000 0.00 0.00 33.69 3.32
112 113 1.299541 GTCCTATGATGGGCGTGTTG 58.700 55.000 0.00 0.00 0.00 3.33
113 114 0.180171 TCCTATGATGGGCGTGTTGG 59.820 55.000 0.00 0.00 0.00 3.77
114 115 0.180171 CCTATGATGGGCGTGTTGGA 59.820 55.000 0.00 0.00 0.00 3.53
115 116 1.586422 CTATGATGGGCGTGTTGGAG 58.414 55.000 0.00 0.00 0.00 3.86
116 117 0.463654 TATGATGGGCGTGTTGGAGC 60.464 55.000 0.00 0.00 0.00 4.70
117 118 2.045926 GATGGGCGTGTTGGAGCT 60.046 61.111 0.00 0.00 0.00 4.09
118 119 2.360350 ATGGGCGTGTTGGAGCTG 60.360 61.111 0.00 0.00 0.00 4.24
123 124 2.048597 CGTGTTGGAGCTGCGGTA 60.049 61.111 0.00 0.00 0.00 4.02
124 125 2.094659 CGTGTTGGAGCTGCGGTAG 61.095 63.158 0.00 0.00 0.00 3.18
146 147 2.882761 CAGTATGCAGGGATGAACATGG 59.117 50.000 0.00 0.00 0.00 3.66
147 148 2.511218 AGTATGCAGGGATGAACATGGT 59.489 45.455 0.00 0.00 0.00 3.55
148 149 2.062971 ATGCAGGGATGAACATGGTC 57.937 50.000 2.98 2.98 0.00 4.02
149 150 0.697658 TGCAGGGATGAACATGGTCA 59.302 50.000 17.41 17.41 0.00 4.02
150 151 1.340308 TGCAGGGATGAACATGGTCAG 60.340 52.381 19.98 6.08 0.00 3.51
151 152 1.340405 GCAGGGATGAACATGGTCAGT 60.340 52.381 19.98 7.46 0.00 3.41
152 153 2.092968 GCAGGGATGAACATGGTCAGTA 60.093 50.000 19.98 0.00 0.00 2.74
153 154 3.535561 CAGGGATGAACATGGTCAGTAC 58.464 50.000 19.98 12.40 0.00 2.73
154 155 2.505819 AGGGATGAACATGGTCAGTACC 59.494 50.000 19.98 19.10 46.98 3.34
155 156 2.505819 GGGATGAACATGGTCAGTACCT 59.494 50.000 19.98 0.86 46.91 3.08
156 157 3.432326 GGGATGAACATGGTCAGTACCTC 60.432 52.174 19.98 10.97 46.91 3.85
157 158 3.448686 GATGAACATGGTCAGTACCTCG 58.551 50.000 19.98 0.00 46.91 4.63
158 159 1.548719 TGAACATGGTCAGTACCTCGG 59.451 52.381 10.05 0.00 46.91 4.63
159 160 0.902531 AACATGGTCAGTACCTCGGG 59.097 55.000 0.00 0.00 46.91 5.14
160 161 0.252103 ACATGGTCAGTACCTCGGGT 60.252 55.000 0.00 1.14 46.91 5.28
161 162 0.460311 CATGGTCAGTACCTCGGGTC 59.540 60.000 0.00 0.00 46.91 4.46
162 163 0.040646 ATGGTCAGTACCTCGGGTCA 59.959 55.000 0.00 0.00 46.91 4.02
163 164 0.040646 TGGTCAGTACCTCGGGTCAT 59.959 55.000 0.00 0.00 46.91 3.06
164 165 0.745468 GGTCAGTACCTCGGGTCATC 59.255 60.000 0.00 0.00 43.08 2.92
165 166 0.381089 GTCAGTACCTCGGGTCATCG 59.619 60.000 0.00 0.00 37.09 3.84
166 167 0.750546 TCAGTACCTCGGGTCATCGG 60.751 60.000 0.00 0.00 37.09 4.18
167 168 2.125961 AGTACCTCGGGTCATCGGC 61.126 63.158 0.00 0.00 37.09 5.54
168 169 2.043752 TACCTCGGGTCATCGGCA 60.044 61.111 0.00 0.00 37.09 5.69
169 170 1.683025 TACCTCGGGTCATCGGCAA 60.683 57.895 0.00 0.00 37.09 4.52
170 171 1.259142 TACCTCGGGTCATCGGCAAA 61.259 55.000 0.00 0.00 37.09 3.68
171 172 1.153168 CCTCGGGTCATCGGCAAAT 60.153 57.895 0.00 0.00 0.00 2.32
172 173 0.748005 CCTCGGGTCATCGGCAAATT 60.748 55.000 0.00 0.00 0.00 1.82
173 174 0.378257 CTCGGGTCATCGGCAAATTG 59.622 55.000 0.00 0.00 0.00 2.32
174 175 0.322098 TCGGGTCATCGGCAAATTGT 60.322 50.000 0.00 0.00 0.00 2.71
175 176 0.525761 CGGGTCATCGGCAAATTGTT 59.474 50.000 0.00 0.00 0.00 2.83
176 177 1.467374 CGGGTCATCGGCAAATTGTTC 60.467 52.381 0.00 0.00 0.00 3.18
177 178 1.818674 GGGTCATCGGCAAATTGTTCT 59.181 47.619 0.00 0.00 0.00 3.01
178 179 3.013921 GGGTCATCGGCAAATTGTTCTA 58.986 45.455 0.00 0.00 0.00 2.10
179 180 3.181500 GGGTCATCGGCAAATTGTTCTAC 60.181 47.826 0.00 0.00 0.00 2.59
180 181 3.181500 GGTCATCGGCAAATTGTTCTACC 60.181 47.826 0.00 0.00 0.00 3.18
181 182 3.013921 TCATCGGCAAATTGTTCTACCC 58.986 45.455 0.00 0.00 0.00 3.69
182 183 1.444836 TCGGCAAATTGTTCTACCCG 58.555 50.000 1.89 1.89 35.83 5.28
183 184 0.450184 CGGCAAATTGTTCTACCCGG 59.550 55.000 0.00 0.00 0.00 5.73
184 185 1.541379 GGCAAATTGTTCTACCCGGT 58.459 50.000 0.00 0.00 0.00 5.28
185 186 1.201414 GGCAAATTGTTCTACCCGGTG 59.799 52.381 0.00 0.00 0.00 4.94
186 187 1.883926 GCAAATTGTTCTACCCGGTGT 59.116 47.619 0.00 0.00 0.00 4.16
187 188 2.295070 GCAAATTGTTCTACCCGGTGTT 59.705 45.455 0.00 0.00 0.00 3.32
188 189 3.502979 GCAAATTGTTCTACCCGGTGTTA 59.497 43.478 0.00 0.00 0.00 2.41
189 190 4.157105 GCAAATTGTTCTACCCGGTGTTAT 59.843 41.667 0.00 0.00 0.00 1.89
190 191 5.636837 CAAATTGTTCTACCCGGTGTTATG 58.363 41.667 0.00 0.00 0.00 1.90
191 192 4.829872 ATTGTTCTACCCGGTGTTATGA 57.170 40.909 0.00 0.00 0.00 2.15
192 193 4.620589 TTGTTCTACCCGGTGTTATGAA 57.379 40.909 0.00 1.94 0.00 2.57
193 194 3.929094 TGTTCTACCCGGTGTTATGAAC 58.071 45.455 0.00 12.90 34.24 3.18
194 195 3.264947 GTTCTACCCGGTGTTATGAACC 58.735 50.000 0.00 0.00 30.83 3.62
195 196 1.832998 TCTACCCGGTGTTATGAACCC 59.167 52.381 0.00 0.00 33.88 4.11
196 197 1.835531 CTACCCGGTGTTATGAACCCT 59.164 52.381 0.00 0.00 33.88 4.34
197 198 1.955451 ACCCGGTGTTATGAACCCTA 58.045 50.000 0.00 0.00 33.88 3.53
198 199 1.556451 ACCCGGTGTTATGAACCCTAC 59.444 52.381 0.00 0.00 33.88 3.18
199 200 1.555992 CCCGGTGTTATGAACCCTACA 59.444 52.381 0.00 0.00 33.88 2.74
200 201 2.419574 CCCGGTGTTATGAACCCTACAG 60.420 54.545 0.00 0.00 33.88 2.74
201 202 2.235402 CCGGTGTTATGAACCCTACAGT 59.765 50.000 0.00 0.00 33.88 3.55
202 203 3.307199 CCGGTGTTATGAACCCTACAGTT 60.307 47.826 0.00 0.00 33.88 3.16
203 204 4.320870 CGGTGTTATGAACCCTACAGTTT 58.679 43.478 0.00 0.00 33.88 2.66
204 205 4.758165 CGGTGTTATGAACCCTACAGTTTT 59.242 41.667 0.00 0.00 33.88 2.43
205 206 5.933463 CGGTGTTATGAACCCTACAGTTTTA 59.067 40.000 0.00 0.00 33.88 1.52
206 207 6.091713 CGGTGTTATGAACCCTACAGTTTTAG 59.908 42.308 0.00 0.00 33.88 1.85
207 208 7.163441 GGTGTTATGAACCCTACAGTTTTAGA 58.837 38.462 0.00 0.00 0.00 2.10
208 209 7.333672 GGTGTTATGAACCCTACAGTTTTAGAG 59.666 40.741 0.00 0.00 0.00 2.43
209 210 8.092687 GTGTTATGAACCCTACAGTTTTAGAGA 58.907 37.037 0.00 0.00 0.00 3.10
210 211 8.092687 TGTTATGAACCCTACAGTTTTAGAGAC 58.907 37.037 0.00 0.00 0.00 3.36
211 212 5.479124 TGAACCCTACAGTTTTAGAGACC 57.521 43.478 0.00 0.00 0.00 3.85
212 213 4.903049 TGAACCCTACAGTTTTAGAGACCA 59.097 41.667 0.00 0.00 0.00 4.02
213 214 5.546499 TGAACCCTACAGTTTTAGAGACCAT 59.454 40.000 0.00 0.00 0.00 3.55
214 215 6.043938 TGAACCCTACAGTTTTAGAGACCATT 59.956 38.462 0.00 0.00 0.00 3.16
215 216 5.805728 ACCCTACAGTTTTAGAGACCATTG 58.194 41.667 0.00 0.00 0.00 2.82
216 217 5.309806 ACCCTACAGTTTTAGAGACCATTGT 59.690 40.000 0.00 0.00 0.00 2.71
217 218 6.183361 ACCCTACAGTTTTAGAGACCATTGTT 60.183 38.462 0.00 0.00 0.00 2.83
218 219 6.715264 CCCTACAGTTTTAGAGACCATTGTTT 59.285 38.462 0.00 0.00 0.00 2.83
219 220 7.308589 CCCTACAGTTTTAGAGACCATTGTTTG 60.309 40.741 0.00 0.00 0.00 2.93
220 221 5.831997 ACAGTTTTAGAGACCATTGTTTGC 58.168 37.500 0.00 0.00 0.00 3.68
221 222 5.221244 ACAGTTTTAGAGACCATTGTTTGCC 60.221 40.000 0.00 0.00 0.00 4.52
222 223 4.892934 AGTTTTAGAGACCATTGTTTGCCA 59.107 37.500 0.00 0.00 0.00 4.92
223 224 4.846779 TTTAGAGACCATTGTTTGCCAC 57.153 40.909 0.00 0.00 0.00 5.01
224 225 1.238439 AGAGACCATTGTTTGCCACG 58.762 50.000 0.00 0.00 0.00 4.94
225 226 1.202758 AGAGACCATTGTTTGCCACGA 60.203 47.619 0.00 0.00 0.00 4.35
226 227 1.197721 GAGACCATTGTTTGCCACGAG 59.802 52.381 0.00 0.00 0.00 4.18
227 228 0.240945 GACCATTGTTTGCCACGAGG 59.759 55.000 0.00 0.00 38.23 4.63
238 239 3.233355 CCACGAGGCTTTAGCACTT 57.767 52.632 3.88 0.00 44.36 3.16
239 240 0.798776 CCACGAGGCTTTAGCACTTG 59.201 55.000 3.88 5.26 44.36 3.16
240 241 0.166814 CACGAGGCTTTAGCACTTGC 59.833 55.000 3.88 0.00 44.36 4.01
241 242 0.250295 ACGAGGCTTTAGCACTTGCA 60.250 50.000 3.62 0.00 45.16 4.08
242 243 0.445436 CGAGGCTTTAGCACTTGCAG 59.555 55.000 3.62 0.00 45.16 4.41
243 244 0.169894 GAGGCTTTAGCACTTGCAGC 59.830 55.000 3.62 3.81 45.16 5.25
244 245 0.251077 AGGCTTTAGCACTTGCAGCT 60.251 50.000 10.74 4.22 45.16 4.24
245 246 0.109412 GGCTTTAGCACTTGCAGCTG 60.109 55.000 10.11 10.11 43.33 4.24
246 247 0.877071 GCTTTAGCACTTGCAGCTGA 59.123 50.000 20.43 0.00 43.33 4.26
247 248 1.471684 GCTTTAGCACTTGCAGCTGAT 59.528 47.619 20.43 0.00 43.33 2.90
248 249 2.477525 GCTTTAGCACTTGCAGCTGATC 60.478 50.000 20.43 0.12 43.33 2.92
249 250 2.775911 TTAGCACTTGCAGCTGATCT 57.224 45.000 20.43 6.48 43.33 2.75
250 251 3.893326 TTAGCACTTGCAGCTGATCTA 57.107 42.857 20.43 5.51 43.33 1.98
251 252 4.412796 TTAGCACTTGCAGCTGATCTAT 57.587 40.909 20.43 0.00 43.33 1.98
252 253 2.836262 AGCACTTGCAGCTGATCTATC 58.164 47.619 20.43 0.00 45.16 2.08
253 254 2.435069 AGCACTTGCAGCTGATCTATCT 59.565 45.455 20.43 3.95 45.16 1.98
254 255 3.118334 AGCACTTGCAGCTGATCTATCTT 60.118 43.478 20.43 0.00 45.16 2.40
255 256 3.626670 GCACTTGCAGCTGATCTATCTTT 59.373 43.478 20.43 0.00 41.59 2.52
256 257 4.496010 GCACTTGCAGCTGATCTATCTTTG 60.496 45.833 20.43 2.17 41.59 2.77
257 258 4.035324 CACTTGCAGCTGATCTATCTTTGG 59.965 45.833 20.43 0.00 0.00 3.28
258 259 4.080695 ACTTGCAGCTGATCTATCTTTGGA 60.081 41.667 20.43 0.00 0.00 3.53
259 260 4.701651 TGCAGCTGATCTATCTTTGGAT 57.298 40.909 20.43 0.00 36.07 3.41
260 261 4.639334 TGCAGCTGATCTATCTTTGGATC 58.361 43.478 20.43 0.00 39.59 3.36
261 262 4.102054 TGCAGCTGATCTATCTTTGGATCA 59.898 41.667 20.43 0.00 44.70 2.92
262 263 5.221864 TGCAGCTGATCTATCTTTGGATCAT 60.222 40.000 20.43 0.00 45.43 2.45
263 264 5.706369 GCAGCTGATCTATCTTTGGATCATT 59.294 40.000 20.43 0.00 45.43 2.57
264 265 6.207025 GCAGCTGATCTATCTTTGGATCATTT 59.793 38.462 20.43 0.00 45.43 2.32
265 266 7.585867 CAGCTGATCTATCTTTGGATCATTTG 58.414 38.462 8.42 4.92 45.43 2.32
266 267 6.715718 AGCTGATCTATCTTTGGATCATTTGG 59.284 38.462 6.17 0.00 45.43 3.28
267 268 6.489361 GCTGATCTATCTTTGGATCATTTGGT 59.511 38.462 6.17 0.00 45.43 3.67
268 269 7.663081 GCTGATCTATCTTTGGATCATTTGGTA 59.337 37.037 6.17 0.00 45.43 3.25
269 270 9.565090 CTGATCTATCTTTGGATCATTTGGTAA 57.435 33.333 6.17 0.00 45.43 2.85
272 273 8.607441 TCTATCTTTGGATCATTTGGTAATCG 57.393 34.615 0.00 0.00 33.71 3.34
273 274 5.499139 TCTTTGGATCATTTGGTAATCGC 57.501 39.130 0.00 0.00 0.00 4.58
274 275 5.192927 TCTTTGGATCATTTGGTAATCGCT 58.807 37.500 0.00 0.00 0.00 4.93
275 276 6.353323 TCTTTGGATCATTTGGTAATCGCTA 58.647 36.000 0.00 0.00 0.00 4.26
276 277 6.483307 TCTTTGGATCATTTGGTAATCGCTAG 59.517 38.462 0.00 0.00 0.00 3.42
277 278 5.290493 TGGATCATTTGGTAATCGCTAGT 57.710 39.130 0.00 0.00 0.00 2.57
278 279 5.056480 TGGATCATTTGGTAATCGCTAGTG 58.944 41.667 0.00 0.00 0.00 2.74
279 280 5.163353 TGGATCATTTGGTAATCGCTAGTGA 60.163 40.000 8.75 8.75 0.00 3.41
280 281 5.177696 GGATCATTTGGTAATCGCTAGTGAC 59.822 44.000 8.45 0.00 0.00 3.67
281 282 5.339008 TCATTTGGTAATCGCTAGTGACT 57.661 39.130 8.45 0.00 0.00 3.41
282 283 5.109210 TCATTTGGTAATCGCTAGTGACTG 58.891 41.667 8.45 0.00 0.00 3.51
283 284 2.579207 TGGTAATCGCTAGTGACTGC 57.421 50.000 8.45 0.43 0.00 4.40
284 285 1.822371 TGGTAATCGCTAGTGACTGCA 59.178 47.619 8.45 0.00 0.00 4.41
285 286 2.232696 TGGTAATCGCTAGTGACTGCAA 59.767 45.455 8.45 0.00 0.00 4.08
286 287 3.118775 TGGTAATCGCTAGTGACTGCAAT 60.119 43.478 8.45 0.00 0.00 3.56
287 288 3.491267 GGTAATCGCTAGTGACTGCAATC 59.509 47.826 8.45 0.00 0.00 2.67
288 289 2.231215 ATCGCTAGTGACTGCAATCC 57.769 50.000 8.45 0.00 0.00 3.01
289 290 0.179137 TCGCTAGTGACTGCAATCCG 60.179 55.000 0.70 0.00 0.00 4.18
290 291 0.179137 CGCTAGTGACTGCAATCCGA 60.179 55.000 0.00 0.00 0.00 4.55
291 292 1.536922 CGCTAGTGACTGCAATCCGAT 60.537 52.381 0.00 0.00 0.00 4.18
292 293 2.555199 GCTAGTGACTGCAATCCGATT 58.445 47.619 0.00 0.00 0.00 3.34
293 294 2.286294 GCTAGTGACTGCAATCCGATTG 59.714 50.000 15.63 15.63 43.06 2.67
294 295 2.479566 AGTGACTGCAATCCGATTGT 57.520 45.000 19.86 3.10 42.20 2.71
295 296 2.079158 AGTGACTGCAATCCGATTGTG 58.921 47.619 19.86 15.46 42.20 3.33
296 297 1.131126 GTGACTGCAATCCGATTGTGG 59.869 52.381 19.86 15.11 42.20 4.17
297 298 1.003003 TGACTGCAATCCGATTGTGGA 59.997 47.619 19.86 6.30 42.20 4.02
305 306 3.843893 ATCCGATTGTGGATGACATCA 57.156 42.857 17.08 1.04 47.00 3.07
306 307 3.843893 TCCGATTGTGGATGACATCAT 57.156 42.857 17.08 1.89 39.70 2.45
307 308 4.953940 TCCGATTGTGGATGACATCATA 57.046 40.909 17.08 2.86 36.57 2.15
308 309 5.289083 TCCGATTGTGGATGACATCATAA 57.711 39.130 17.08 8.81 36.57 1.90
309 310 5.679601 TCCGATTGTGGATGACATCATAAA 58.320 37.500 17.08 7.85 36.57 1.40
310 311 6.118852 TCCGATTGTGGATGACATCATAAAA 58.881 36.000 17.08 7.28 36.57 1.52
311 312 6.260714 TCCGATTGTGGATGACATCATAAAAG 59.739 38.462 17.08 7.04 36.57 2.27
312 313 6.432936 CGATTGTGGATGACATCATAAAAGG 58.567 40.000 17.08 0.00 36.57 3.11
313 314 6.513884 CGATTGTGGATGACATCATAAAAGGG 60.514 42.308 17.08 0.78 36.57 3.95
314 315 4.535781 TGTGGATGACATCATAAAAGGGG 58.464 43.478 17.08 0.00 36.57 4.79
315 316 4.017591 TGTGGATGACATCATAAAAGGGGT 60.018 41.667 17.08 0.00 36.57 4.95
316 317 5.192722 TGTGGATGACATCATAAAAGGGGTA 59.807 40.000 17.08 0.00 36.57 3.69
317 318 5.765182 GTGGATGACATCATAAAAGGGGTAG 59.235 44.000 17.08 0.00 36.57 3.18
318 319 5.163099 TGGATGACATCATAAAAGGGGTAGG 60.163 44.000 17.08 0.00 36.57 3.18
319 320 5.073144 GGATGACATCATAAAAGGGGTAGGA 59.927 44.000 17.08 0.00 36.57 2.94
320 321 5.630415 TGACATCATAAAAGGGGTAGGAG 57.370 43.478 0.00 0.00 0.00 3.69
321 322 4.412199 TGACATCATAAAAGGGGTAGGAGG 59.588 45.833 0.00 0.00 0.00 4.30
322 323 3.138468 ACATCATAAAAGGGGTAGGAGGC 59.862 47.826 0.00 0.00 0.00 4.70
323 324 3.145559 TCATAAAAGGGGTAGGAGGCT 57.854 47.619 0.00 0.00 0.00 4.58
324 325 3.046374 TCATAAAAGGGGTAGGAGGCTC 58.954 50.000 5.78 5.78 0.00 4.70
325 326 2.963654 TAAAAGGGGTAGGAGGCTCT 57.036 50.000 15.23 3.10 0.00 4.09
326 327 1.585895 AAAAGGGGTAGGAGGCTCTC 58.414 55.000 15.23 4.64 0.00 3.20
327 328 0.417841 AAAGGGGTAGGAGGCTCTCA 59.582 55.000 15.23 0.00 31.08 3.27
328 329 0.644937 AAGGGGTAGGAGGCTCTCAT 59.355 55.000 15.23 3.62 31.08 2.90
329 330 1.547099 AGGGGTAGGAGGCTCTCATA 58.453 55.000 15.23 2.62 31.08 2.15
330 331 2.085934 AGGGGTAGGAGGCTCTCATAT 58.914 52.381 15.23 0.00 29.62 1.78
331 332 2.043801 AGGGGTAGGAGGCTCTCATATC 59.956 54.545 15.23 5.65 29.62 1.63
332 333 2.225394 GGGGTAGGAGGCTCTCATATCA 60.225 54.545 15.23 0.00 30.55 2.15
333 334 2.829120 GGGTAGGAGGCTCTCATATCAC 59.171 54.545 15.23 2.37 30.55 3.06
334 335 3.501349 GGTAGGAGGCTCTCATATCACA 58.499 50.000 15.23 0.00 29.58 3.58
335 336 3.509575 GGTAGGAGGCTCTCATATCACAG 59.490 52.174 15.23 0.00 29.58 3.66
336 337 3.326946 AGGAGGCTCTCATATCACAGT 57.673 47.619 15.23 0.00 31.08 3.55
337 338 3.230134 AGGAGGCTCTCATATCACAGTC 58.770 50.000 15.23 0.00 31.08 3.51
338 339 2.030363 GGAGGCTCTCATATCACAGTCG 60.030 54.545 15.23 0.00 31.08 4.18
339 340 2.621055 GAGGCTCTCATATCACAGTCGT 59.379 50.000 7.40 0.00 0.00 4.34
340 341 2.621055 AGGCTCTCATATCACAGTCGTC 59.379 50.000 0.00 0.00 0.00 4.20
341 342 2.359214 GGCTCTCATATCACAGTCGTCA 59.641 50.000 0.00 0.00 0.00 4.35
342 343 3.181486 GGCTCTCATATCACAGTCGTCAA 60.181 47.826 0.00 0.00 0.00 3.18
343 344 4.041049 GCTCTCATATCACAGTCGTCAAG 58.959 47.826 0.00 0.00 0.00 3.02
344 345 4.201960 GCTCTCATATCACAGTCGTCAAGA 60.202 45.833 0.00 0.00 0.00 3.02
345 346 5.677344 GCTCTCATATCACAGTCGTCAAGAA 60.677 44.000 0.00 0.00 0.00 2.52
346 347 5.884771 TCTCATATCACAGTCGTCAAGAAG 58.115 41.667 0.00 0.00 0.00 2.85
347 348 5.648092 TCTCATATCACAGTCGTCAAGAAGA 59.352 40.000 0.00 0.00 0.00 2.87
348 349 6.319911 TCTCATATCACAGTCGTCAAGAAGAT 59.680 38.462 0.00 0.00 0.00 2.40
349 350 7.499232 TCTCATATCACAGTCGTCAAGAAGATA 59.501 37.037 0.00 0.00 0.00 1.98
350 351 7.996385 TCATATCACAGTCGTCAAGAAGATAA 58.004 34.615 0.00 0.00 0.00 1.75
351 352 8.466798 TCATATCACAGTCGTCAAGAAGATAAA 58.533 33.333 0.00 0.00 0.00 1.40
352 353 9.254133 CATATCACAGTCGTCAAGAAGATAAAT 57.746 33.333 0.00 0.00 0.00 1.40
355 356 9.823647 ATCACAGTCGTCAAGAAGATAAATAAT 57.176 29.630 0.00 0.00 0.00 1.28
397 398 8.999431 ACTAGTTGTGATTTTATGTTCGAATGT 58.001 29.630 0.00 0.00 0.00 2.71
398 399 9.478019 CTAGTTGTGATTTTATGTTCGAATGTC 57.522 33.333 0.00 0.00 0.00 3.06
399 400 7.015289 AGTTGTGATTTTATGTTCGAATGTCG 58.985 34.615 0.00 0.00 42.10 4.35
400 401 6.474819 TGTGATTTTATGTTCGAATGTCGT 57.525 33.333 0.00 0.00 41.35 4.34
401 402 6.303370 TGTGATTTTATGTTCGAATGTCGTG 58.697 36.000 0.00 0.00 41.35 4.35
402 403 5.225129 GTGATTTTATGTTCGAATGTCGTGC 59.775 40.000 0.00 0.00 41.35 5.34
403 404 5.121611 TGATTTTATGTTCGAATGTCGTGCT 59.878 36.000 0.00 0.00 41.35 4.40
404 405 4.577687 TTTATGTTCGAATGTCGTGCTC 57.422 40.909 0.00 0.00 41.35 4.26
405 406 1.359848 ATGTTCGAATGTCGTGCTCC 58.640 50.000 0.00 0.00 41.35 4.70
406 407 1.006825 TGTTCGAATGTCGTGCTCCG 61.007 55.000 0.00 0.00 41.35 4.63
407 408 0.731514 GTTCGAATGTCGTGCTCCGA 60.732 55.000 0.00 0.00 45.00 4.55
415 416 3.721625 TCGTGCTCCGAATCAGAAG 57.278 52.632 0.00 0.00 44.03 2.85
416 417 0.173481 TCGTGCTCCGAATCAGAAGG 59.827 55.000 0.00 0.00 44.03 3.46
417 418 1.424493 CGTGCTCCGAATCAGAAGGC 61.424 60.000 0.00 0.00 39.56 4.35
418 419 0.107945 GTGCTCCGAATCAGAAGGCT 60.108 55.000 0.00 0.00 0.00 4.58
419 420 0.176680 TGCTCCGAATCAGAAGGCTC 59.823 55.000 0.00 0.00 0.00 4.70
420 421 0.176680 GCTCCGAATCAGAAGGCTCA 59.823 55.000 0.00 0.00 0.00 4.26
421 422 1.933247 CTCCGAATCAGAAGGCTCAC 58.067 55.000 0.00 0.00 0.00 3.51
422 423 1.205655 CTCCGAATCAGAAGGCTCACA 59.794 52.381 0.00 0.00 0.00 3.58
423 424 1.623311 TCCGAATCAGAAGGCTCACAA 59.377 47.619 0.00 0.00 0.00 3.33
424 425 2.237143 TCCGAATCAGAAGGCTCACAAT 59.763 45.455 0.00 0.00 0.00 2.71
425 426 2.611292 CCGAATCAGAAGGCTCACAATC 59.389 50.000 0.00 0.00 0.00 2.67
426 427 3.529533 CGAATCAGAAGGCTCACAATCT 58.470 45.455 0.00 0.00 0.00 2.40
427 428 3.937706 CGAATCAGAAGGCTCACAATCTT 59.062 43.478 0.00 0.00 0.00 2.40
428 429 4.201792 CGAATCAGAAGGCTCACAATCTTG 60.202 45.833 0.00 0.00 0.00 3.02
429 430 3.777106 TCAGAAGGCTCACAATCTTGT 57.223 42.857 0.00 0.00 43.36 3.16
430 431 4.890158 TCAGAAGGCTCACAATCTTGTA 57.110 40.909 0.00 0.00 39.91 2.41
431 432 5.227569 TCAGAAGGCTCACAATCTTGTAA 57.772 39.130 0.00 0.00 39.91 2.41
432 433 5.620206 TCAGAAGGCTCACAATCTTGTAAA 58.380 37.500 0.00 0.00 39.91 2.01
433 434 6.061441 TCAGAAGGCTCACAATCTTGTAAAA 58.939 36.000 0.00 0.00 39.91 1.52
434 435 6.545666 TCAGAAGGCTCACAATCTTGTAAAAA 59.454 34.615 0.00 0.00 39.91 1.94
450 451 3.792716 AAAAATTGCCTCGCTTCCG 57.207 47.368 0.00 0.00 0.00 4.30
451 452 0.388520 AAAAATTGCCTCGCTTCCGC 60.389 50.000 0.00 0.00 0.00 5.54
452 453 1.523154 AAAATTGCCTCGCTTCCGCA 61.523 50.000 0.00 0.00 35.30 5.69
453 454 1.926511 AAATTGCCTCGCTTCCGCAG 61.927 55.000 0.00 0.00 33.30 5.18
467 468 4.347453 GCAGGGTTGCCGCTTGTG 62.347 66.667 0.00 0.00 44.74 3.33
468 469 3.673484 CAGGGTTGCCGCTTGTGG 61.673 66.667 0.00 0.00 0.00 4.17
478 479 0.455815 CCGCTTGTGGCTTATTTCCC 59.544 55.000 0.00 0.00 39.13 3.97
479 480 0.455815 CGCTTGTGGCTTATTTCCCC 59.544 55.000 0.00 0.00 39.13 4.81
480 481 1.852633 GCTTGTGGCTTATTTCCCCT 58.147 50.000 0.00 0.00 38.06 4.79
481 482 1.751351 GCTTGTGGCTTATTTCCCCTC 59.249 52.381 0.00 0.00 38.06 4.30
482 483 2.883888 GCTTGTGGCTTATTTCCCCTCA 60.884 50.000 0.00 0.00 38.06 3.86
483 484 3.635591 CTTGTGGCTTATTTCCCCTCAT 58.364 45.455 0.00 0.00 0.00 2.90
484 485 3.017048 TGTGGCTTATTTCCCCTCATG 57.983 47.619 0.00 0.00 0.00 3.07
485 486 2.580322 TGTGGCTTATTTCCCCTCATGA 59.420 45.455 0.00 0.00 0.00 3.07
486 487 2.952310 GTGGCTTATTTCCCCTCATGAC 59.048 50.000 0.00 0.00 0.00 3.06
487 488 2.091885 TGGCTTATTTCCCCTCATGACC 60.092 50.000 0.00 0.00 0.00 4.02
488 489 2.587522 GCTTATTTCCCCTCATGACCC 58.412 52.381 0.00 0.00 0.00 4.46
489 490 2.753168 GCTTATTTCCCCTCATGACCCC 60.753 54.545 0.00 0.00 0.00 4.95
490 491 1.529744 TATTTCCCCTCATGACCCCC 58.470 55.000 0.00 0.00 0.00 5.40
491 492 0.254299 ATTTCCCCTCATGACCCCCT 60.254 55.000 0.00 0.00 0.00 4.79
492 493 0.479589 TTTCCCCTCATGACCCCCTT 60.480 55.000 0.00 0.00 0.00 3.95
493 494 0.479589 TTCCCCTCATGACCCCCTTT 60.480 55.000 0.00 0.00 0.00 3.11
494 495 0.423956 TCCCCTCATGACCCCCTTTA 59.576 55.000 0.00 0.00 0.00 1.85
495 496 1.012049 TCCCCTCATGACCCCCTTTAT 59.988 52.381 0.00 0.00 0.00 1.40
496 497 1.425448 CCCCTCATGACCCCCTTTATC 59.575 57.143 0.00 0.00 0.00 1.75
497 498 1.425448 CCCTCATGACCCCCTTTATCC 59.575 57.143 0.00 0.00 0.00 2.59
498 499 1.425448 CCTCATGACCCCCTTTATCCC 59.575 57.143 0.00 0.00 0.00 3.85
499 500 2.422746 CTCATGACCCCCTTTATCCCT 58.577 52.381 0.00 0.00 0.00 4.20
500 501 2.785857 CTCATGACCCCCTTTATCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
501 502 3.205282 CTCATGACCCCCTTTATCCCTTT 59.795 47.826 0.00 0.00 0.00 3.11
502 503 3.052944 TCATGACCCCCTTTATCCCTTTG 60.053 47.826 0.00 0.00 0.00 2.77
503 504 2.650013 TGACCCCCTTTATCCCTTTGA 58.350 47.619 0.00 0.00 0.00 2.69
504 505 2.997463 TGACCCCCTTTATCCCTTTGAA 59.003 45.455 0.00 0.00 0.00 2.69
505 506 3.600617 TGACCCCCTTTATCCCTTTGAAT 59.399 43.478 0.00 0.00 0.00 2.57
506 507 4.796816 TGACCCCCTTTATCCCTTTGAATA 59.203 41.667 0.00 0.00 0.00 1.75
507 508 5.438386 TGACCCCCTTTATCCCTTTGAATAT 59.562 40.000 0.00 0.00 0.00 1.28
508 509 6.626121 TGACCCCCTTTATCCCTTTGAATATA 59.374 38.462 0.00 0.00 0.00 0.86
509 510 7.299520 TGACCCCCTTTATCCCTTTGAATATAT 59.700 37.037 0.00 0.00 0.00 0.86
510 511 8.080658 ACCCCCTTTATCCCTTTGAATATATT 57.919 34.615 0.00 0.00 0.00 1.28
511 512 8.528153 ACCCCCTTTATCCCTTTGAATATATTT 58.472 33.333 0.00 0.00 0.00 1.40
512 513 9.392506 CCCCCTTTATCCCTTTGAATATATTTT 57.607 33.333 0.00 0.00 0.00 1.82
535 536 9.612066 TTTTCAAATTAATAAAGCATGGGATCC 57.388 29.630 1.92 1.92 0.00 3.36
536 537 7.301868 TCAAATTAATAAAGCATGGGATCCC 57.698 36.000 25.22 25.22 0.00 3.85
537 538 7.075148 TCAAATTAATAAAGCATGGGATCCCT 58.925 34.615 31.05 14.27 36.94 4.20
538 539 7.568366 TCAAATTAATAAAGCATGGGATCCCTT 59.432 33.333 31.05 22.58 36.94 3.95
539 540 8.869109 CAAATTAATAAAGCATGGGATCCCTTA 58.131 33.333 31.05 20.18 36.94 2.69
540 541 9.445973 AAATTAATAAAGCATGGGATCCCTTAA 57.554 29.630 31.05 22.31 36.94 1.85
541 542 9.445973 AATTAATAAAGCATGGGATCCCTTAAA 57.554 29.630 31.05 11.93 36.94 1.52
542 543 8.846423 TTAATAAAGCATGGGATCCCTTAAAA 57.154 30.769 31.05 11.51 36.94 1.52
543 544 6.983906 ATAAAGCATGGGATCCCTTAAAAG 57.016 37.500 31.05 13.95 36.94 2.27
544 545 4.608170 AAGCATGGGATCCCTTAAAAGA 57.392 40.909 31.05 9.90 36.94 2.52
545 546 4.608170 AGCATGGGATCCCTTAAAAGAA 57.392 40.909 31.05 9.09 36.94 2.52
546 547 4.946646 AGCATGGGATCCCTTAAAAGAAA 58.053 39.130 31.05 8.30 36.94 2.52
547 548 5.532155 AGCATGGGATCCCTTAAAAGAAAT 58.468 37.500 31.05 10.41 36.94 2.17
548 549 5.364735 AGCATGGGATCCCTTAAAAGAAATG 59.635 40.000 31.05 21.80 36.94 2.32
549 550 5.129320 GCATGGGATCCCTTAAAAGAAATGT 59.871 40.000 31.05 0.00 36.94 2.71
550 551 6.576185 CATGGGATCCCTTAAAAGAAATGTG 58.424 40.000 31.05 5.20 36.94 3.21
551 552 5.650283 TGGGATCCCTTAAAAGAAATGTGT 58.350 37.500 31.05 0.00 36.94 3.72
552 553 6.795590 TGGGATCCCTTAAAAGAAATGTGTA 58.204 36.000 31.05 1.58 36.94 2.90
553 554 7.418378 TGGGATCCCTTAAAAGAAATGTGTAT 58.582 34.615 31.05 0.00 36.94 2.29
554 555 7.559897 TGGGATCCCTTAAAAGAAATGTGTATC 59.440 37.037 31.05 0.00 36.94 2.24
555 556 7.014326 GGGATCCCTTAAAAGAAATGTGTATCC 59.986 40.741 24.69 0.00 0.00 2.59
556 557 7.559897 GGATCCCTTAAAAGAAATGTGTATCCA 59.440 37.037 0.00 0.00 0.00 3.41
557 558 9.136323 GATCCCTTAAAAGAAATGTGTATCCAT 57.864 33.333 0.00 0.00 0.00 3.41
559 560 9.403583 TCCCTTAAAAGAAATGTGTATCCATAC 57.596 33.333 0.00 0.00 0.00 2.39
560 561 9.184523 CCCTTAAAAGAAATGTGTATCCATACA 57.815 33.333 0.00 0.00 40.69 2.29
564 565 8.931385 AAAAGAAATGTGTATCCATACATTGC 57.069 30.769 2.77 0.00 43.34 3.56
565 566 6.639632 AGAAATGTGTATCCATACATTGCC 57.360 37.500 2.77 0.00 43.34 4.52
566 567 6.367983 AGAAATGTGTATCCATACATTGCCT 58.632 36.000 2.77 0.00 43.34 4.75
567 568 6.488006 AGAAATGTGTATCCATACATTGCCTC 59.512 38.462 2.77 0.00 43.34 4.70
568 569 4.085357 TGTGTATCCATACATTGCCTCC 57.915 45.455 2.77 0.00 44.25 4.30
569 570 3.716353 TGTGTATCCATACATTGCCTCCT 59.284 43.478 2.77 0.00 44.25 3.69
570 571 4.202357 TGTGTATCCATACATTGCCTCCTC 60.202 45.833 2.77 0.00 44.25 3.71
571 572 2.847327 ATCCATACATTGCCTCCTCG 57.153 50.000 0.00 0.00 0.00 4.63
572 573 0.758734 TCCATACATTGCCTCCTCGG 59.241 55.000 0.00 0.00 0.00 4.63
573 574 0.250467 CCATACATTGCCTCCTCGGG 60.250 60.000 0.00 0.00 0.00 5.14
574 575 0.469917 CATACATTGCCTCCTCGGGT 59.530 55.000 0.00 0.00 0.00 5.28
575 576 1.134098 CATACATTGCCTCCTCGGGTT 60.134 52.381 0.00 0.00 0.00 4.11
576 577 0.251916 TACATTGCCTCCTCGGGTTG 59.748 55.000 0.00 0.00 0.00 3.77
577 578 1.750399 CATTGCCTCCTCGGGTTGG 60.750 63.158 0.00 0.00 0.00 3.77
578 579 2.983879 ATTGCCTCCTCGGGTTGGG 61.984 63.158 0.00 0.00 0.00 4.12
579 580 4.974438 TGCCTCCTCGGGTTGGGT 62.974 66.667 0.00 0.00 0.00 4.51
580 581 3.647771 GCCTCCTCGGGTTGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
581 582 2.669240 CCTCCTCGGGTTGGGTTC 59.331 66.667 0.00 0.00 0.00 3.62
582 583 2.669240 CTCCTCGGGTTGGGTTCC 59.331 66.667 0.00 0.00 0.00 3.62
583 584 1.918800 CTCCTCGGGTTGGGTTCCT 60.919 63.158 0.00 0.00 0.00 3.36
584 585 1.462627 TCCTCGGGTTGGGTTCCTT 60.463 57.895 0.00 0.00 0.00 3.36
585 586 1.063654 TCCTCGGGTTGGGTTCCTTT 61.064 55.000 0.00 0.00 0.00 3.11
586 587 0.608308 CCTCGGGTTGGGTTCCTTTC 60.608 60.000 0.00 0.00 0.00 2.62
587 588 0.608308 CTCGGGTTGGGTTCCTTTCC 60.608 60.000 0.00 0.00 0.00 3.13
628 629 3.497115 TGGGCTTGTGGCACTGGA 61.497 61.111 19.83 4.04 46.25 3.86
633 634 1.089920 GCTTGTGGCACTGGACATAG 58.910 55.000 19.83 5.87 41.35 2.23
634 635 1.089920 CTTGTGGCACTGGACATAGC 58.910 55.000 19.83 0.00 32.08 2.97
667 678 4.202441 CCGTGATCCTTCCAGAATCAATT 58.798 43.478 0.00 0.00 0.00 2.32
688 711 0.616111 GGAGCACAAGAGAGGGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
858 897 1.498166 CTCGTCTCGAGCGAGTTGT 59.502 57.895 32.50 0.00 46.75 3.32
1000 1043 1.135257 GTAGCTTCTTCTCAGCTCGCA 60.135 52.381 0.00 0.00 44.77 5.10
1001 1044 0.108709 AGCTTCTTCTCAGCTCGCAG 60.109 55.000 0.00 0.00 44.77 5.18
1002 1045 1.694955 GCTTCTTCTCAGCTCGCAGC 61.695 60.000 0.47 0.47 42.84 5.25
1092 1141 2.125753 CGCCGCTCTGCTTCTTCT 60.126 61.111 0.00 0.00 0.00 2.85
1093 1142 1.739562 CGCCGCTCTGCTTCTTCTT 60.740 57.895 0.00 0.00 0.00 2.52
1094 1143 1.691215 CGCCGCTCTGCTTCTTCTTC 61.691 60.000 0.00 0.00 0.00 2.87
1116 1165 4.087892 CCAGTGCCAGGGGTCTCG 62.088 72.222 0.00 0.00 0.00 4.04
1117 1166 3.314331 CAGTGCCAGGGGTCTCGT 61.314 66.667 0.00 0.00 0.00 4.18
1209 1258 0.690762 TACTTCCTGCCAGGTTCCAC 59.309 55.000 11.27 0.00 36.53 4.02
1213 1262 0.768221 TCCTGCCAGGTTCCACTCTT 60.768 55.000 11.27 0.00 36.53 2.85
1215 1264 1.228245 TGCCAGGTTCCACTCTTGC 60.228 57.895 0.00 0.00 0.00 4.01
1217 1266 0.610232 GCCAGGTTCCACTCTTGCAT 60.610 55.000 0.00 0.00 0.00 3.96
1218 1267 1.171308 CCAGGTTCCACTCTTGCATG 58.829 55.000 0.00 0.00 0.00 4.06
1219 1268 0.524862 CAGGTTCCACTCTTGCATGC 59.475 55.000 11.82 11.82 0.00 4.06
1220 1269 0.111061 AGGTTCCACTCTTGCATGCA 59.889 50.000 18.46 18.46 0.00 3.96
1221 1270 1.180029 GGTTCCACTCTTGCATGCAT 58.820 50.000 23.37 2.82 0.00 3.96
1222 1271 1.547372 GGTTCCACTCTTGCATGCATT 59.453 47.619 23.37 3.34 0.00 3.56
1223 1272 2.416431 GGTTCCACTCTTGCATGCATTC 60.416 50.000 23.37 0.00 0.00 2.67
1226 1275 2.751259 TCCACTCTTGCATGCATTCTTC 59.249 45.455 23.37 0.00 0.00 2.87
1227 1276 2.753452 CCACTCTTGCATGCATTCTTCT 59.247 45.455 23.37 0.00 0.00 2.85
1229 1278 4.166523 CACTCTTGCATGCATTCTTCTTG 58.833 43.478 23.37 8.78 0.00 3.02
1237 1306 1.619332 TGCATTCTTCTTGCCATGCAA 59.381 42.857 3.24 1.13 46.95 4.08
1269 1339 0.108615 CTCCCGTGTTCTGAAGCGAT 60.109 55.000 13.56 0.00 0.00 4.58
1272 1342 1.272781 CCGTGTTCTGAAGCGATCTC 58.727 55.000 13.56 0.00 0.00 2.75
1273 1343 1.272781 CGTGTTCTGAAGCGATCTCC 58.727 55.000 8.11 0.00 0.00 3.71
1274 1344 1.646189 GTGTTCTGAAGCGATCTCCC 58.354 55.000 0.00 0.00 0.00 4.30
1275 1345 1.066858 GTGTTCTGAAGCGATCTCCCA 60.067 52.381 0.00 0.00 0.00 4.37
1276 1346 1.833630 TGTTCTGAAGCGATCTCCCAT 59.166 47.619 0.00 0.00 0.00 4.00
1277 1347 2.237143 TGTTCTGAAGCGATCTCCCATT 59.763 45.455 0.00 0.00 0.00 3.16
1278 1348 3.274288 GTTCTGAAGCGATCTCCCATTT 58.726 45.455 0.00 0.00 0.00 2.32
1279 1349 2.910199 TCTGAAGCGATCTCCCATTTG 58.090 47.619 0.00 0.00 0.00 2.32
1281 1351 3.012518 CTGAAGCGATCTCCCATTTGTT 58.987 45.455 0.00 0.00 0.00 2.83
1282 1352 3.009723 TGAAGCGATCTCCCATTTGTTC 58.990 45.455 0.00 0.00 0.00 3.18
1302 1375 1.986378 CGTTCGTCAGATGTGAAGGTC 59.014 52.381 5.97 0.00 33.27 3.85
1737 1813 3.413300 TGGTTCCCGCCCATACCC 61.413 66.667 0.00 0.00 0.00 3.69
1746 1822 0.541863 CGCCCATACCCTTCTTCACT 59.458 55.000 0.00 0.00 0.00 3.41
1749 1825 1.490910 CCCATACCCTTCTTCACTCCC 59.509 57.143 0.00 0.00 0.00 4.30
1809 1885 3.515316 CTTCACGCCACCGTCACCT 62.515 63.158 0.00 0.00 46.39 4.00
1815 1891 3.238497 CCACCGTCACCTCCACCA 61.238 66.667 0.00 0.00 0.00 4.17
1836 1912 1.272258 CCGGCTTTCCCTTTCCCTTTA 60.272 52.381 0.00 0.00 0.00 1.85
2130 2218 1.898574 AACTGCAAGCCCTTCGGTG 60.899 57.895 0.00 0.00 37.60 4.94
2160 2248 0.451783 CACCTTCAAGGCATTACCGC 59.548 55.000 2.20 0.00 46.52 5.68
2255 2372 4.551056 GCAATTTGTTATGCTCGTGTTG 57.449 40.909 0.00 0.00 39.46 3.33
2265 2382 1.447838 CTCGTGTTGGGGACGGATG 60.448 63.158 0.00 0.00 37.43 3.51
2266 2383 2.435938 CGTGTTGGGGACGGATGG 60.436 66.667 0.00 0.00 33.08 3.51
2270 2387 1.210967 GTGTTGGGGACGGATGGATAA 59.789 52.381 0.00 0.00 0.00 1.75
2349 2482 7.882791 TGCCTATGTCAGATTGTAAAAAGAAGA 59.117 33.333 0.00 0.00 0.00 2.87
2350 2483 8.730680 GCCTATGTCAGATTGTAAAAAGAAGAA 58.269 33.333 0.00 0.00 0.00 2.52
2354 2487 8.964476 TGTCAGATTGTAAAAAGAAGAAGACT 57.036 30.769 0.00 0.00 0.00 3.24
2355 2488 9.396022 TGTCAGATTGTAAAAAGAAGAAGACTT 57.604 29.630 0.00 0.00 39.24 3.01
2525 2663 4.442753 GCTCCTCCTTCACTAGAAAGATGG 60.443 50.000 0.00 3.72 32.35 3.51
2533 2671 4.033009 TCACTAGAAAGATGGCATGAGGA 58.967 43.478 3.81 0.00 0.00 3.71
2534 2672 4.471025 TCACTAGAAAGATGGCATGAGGAA 59.529 41.667 3.81 0.00 0.00 3.36
2535 2673 4.815308 CACTAGAAAGATGGCATGAGGAAG 59.185 45.833 3.81 0.00 0.00 3.46
2544 4930 2.027192 TGGCATGAGGAAGTAAGACACC 60.027 50.000 0.00 0.00 0.00 4.16
2550 4936 5.152623 TGAGGAAGTAAGACACCAAGATG 57.847 43.478 0.00 0.00 0.00 2.90
2551 4937 4.593206 TGAGGAAGTAAGACACCAAGATGT 59.407 41.667 0.00 0.00 34.78 3.06
2574 4960 8.578308 TGTATATTGCAATAGTTACCGTGTAC 57.422 34.615 22.76 16.33 0.00 2.90
2637 6240 8.195436 TGAATACAACTGACTAGGCATAAGTAC 58.805 37.037 0.00 0.00 0.00 2.73
2676 6281 5.835113 AGTTTTTGCTTGTAGCTTGAAGA 57.165 34.783 0.00 0.00 42.97 2.87
2677 6282 5.825507 AGTTTTTGCTTGTAGCTTGAAGAG 58.174 37.500 0.00 0.00 42.97 2.85
2687 6292 5.793817 TGTAGCTTGAAGAGTCAAATGCTA 58.206 37.500 0.00 6.41 41.19 3.49
2723 6328 8.716646 AAAACAGAGAATTTTAAACCCAGTTG 57.283 30.769 0.00 0.00 0.00 3.16
2724 6329 5.842907 ACAGAGAATTTTAAACCCAGTTGC 58.157 37.500 0.00 0.00 0.00 4.17
2725 6330 4.917415 CAGAGAATTTTAAACCCAGTTGCG 59.083 41.667 0.00 0.00 0.00 4.85
2726 6331 3.649073 AGAATTTTAAACCCAGTTGCGC 58.351 40.909 0.00 0.00 0.00 6.09
2727 6332 3.320826 AGAATTTTAAACCCAGTTGCGCT 59.679 39.130 9.73 0.00 0.00 5.92
2728 6333 2.785713 TTTTAAACCCAGTTGCGCTC 57.214 45.000 9.73 1.40 0.00 5.03
2780 6438 5.444745 GGAGAGAAAATTGTTCATCGACGAC 60.445 44.000 0.00 0.00 0.00 4.34
2874 6535 2.697751 CCTGTCCTAGTGAAGAGATGGG 59.302 54.545 0.00 0.00 0.00 4.00
2907 6568 0.535780 TGGCACCAGAGCAAAGAGTG 60.536 55.000 0.00 0.00 35.83 3.51
2969 6630 0.320771 CAAGAACTGTGGGGTCGAGG 60.321 60.000 0.00 0.00 36.61 4.63
3012 6673 2.104792 CCAAAGGTCCAGAACTGAGACA 59.895 50.000 17.84 0.00 34.58 3.41
3067 6728 6.367695 ACTCGAACATTTGATGAAACGATGTA 59.632 34.615 0.00 0.00 34.62 2.29
3068 6729 6.761117 TCGAACATTTGATGAAACGATGTAG 58.239 36.000 0.00 0.00 32.23 2.74
3109 6795 8.579850 TTTTCTGGATATTTGCTTATCAGTGT 57.420 30.769 0.00 0.00 31.42 3.55
3110 6796 8.579850 TTTCTGGATATTTGCTTATCAGTGTT 57.420 30.769 0.00 0.00 31.42 3.32
3111 6797 7.558161 TCTGGATATTTGCTTATCAGTGTTG 57.442 36.000 0.00 0.00 31.42 3.33
3124 6810 8.184192 GCTTATCAGTGTTGTTGTGCTTAATAT 58.816 33.333 0.00 0.00 0.00 1.28
3163 6849 9.864034 CATGTATTCTATTTGTAACGGTTGATC 57.136 33.333 3.07 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.767255 CACCAGTGGAGCCCGCTC 62.767 72.222 18.40 8.23 43.13 5.03
4 5 2.490270 AATCTGCACCAGTGGAGCCC 62.490 60.000 26.20 7.50 46.76 5.19
5 6 0.253044 TAATCTGCACCAGTGGAGCC 59.747 55.000 26.20 10.87 46.76 4.70
6 7 2.338577 ATAATCTGCACCAGTGGAGC 57.661 50.000 23.20 23.20 46.76 4.70
8 9 6.493189 TTATGTATAATCTGCACCAGTGGA 57.507 37.500 18.40 0.00 32.61 4.02
9 10 7.750229 ATTTATGTATAATCTGCACCAGTGG 57.250 36.000 7.91 7.91 32.61 4.00
34 35 8.742777 AGTGTATTTTCTGTATGCACATCATTT 58.257 29.630 0.00 0.00 39.94 2.32
35 36 8.284945 AGTGTATTTTCTGTATGCACATCATT 57.715 30.769 0.00 0.00 39.94 2.57
36 37 7.870509 AGTGTATTTTCTGTATGCACATCAT 57.129 32.000 0.00 0.00 39.94 2.45
37 38 8.785329 TTAGTGTATTTTCTGTATGCACATCA 57.215 30.769 0.00 0.00 39.94 3.07
38 39 8.338259 CCTTAGTGTATTTTCTGTATGCACATC 58.662 37.037 0.00 0.00 39.94 3.06
39 40 7.201732 GCCTTAGTGTATTTTCTGTATGCACAT 60.202 37.037 0.00 0.00 39.94 3.21
40 41 6.093495 GCCTTAGTGTATTTTCTGTATGCACA 59.907 38.462 0.00 0.00 39.94 4.57
41 42 6.093495 TGCCTTAGTGTATTTTCTGTATGCAC 59.907 38.462 0.00 0.00 38.43 4.57
42 43 6.176896 TGCCTTAGTGTATTTTCTGTATGCA 58.823 36.000 0.00 0.00 0.00 3.96
43 44 6.677781 TGCCTTAGTGTATTTTCTGTATGC 57.322 37.500 0.00 0.00 0.00 3.14
44 45 8.124823 CACATGCCTTAGTGTATTTTCTGTATG 58.875 37.037 0.00 0.00 0.00 2.39
45 46 7.829211 ACACATGCCTTAGTGTATTTTCTGTAT 59.171 33.333 0.00 0.00 46.32 2.29
46 47 7.165485 ACACATGCCTTAGTGTATTTTCTGTA 58.835 34.615 0.00 0.00 46.32 2.74
47 48 6.003950 ACACATGCCTTAGTGTATTTTCTGT 58.996 36.000 0.00 0.00 46.32 3.41
48 49 6.500684 ACACATGCCTTAGTGTATTTTCTG 57.499 37.500 0.00 0.00 46.32 3.02
85 86 1.133482 CCCATCATAGGACAAACCCCC 60.133 57.143 0.00 0.00 40.05 5.40
86 87 1.754201 GCCCATCATAGGACAAACCCC 60.754 57.143 0.00 0.00 40.05 4.95
87 88 1.692411 GCCCATCATAGGACAAACCC 58.308 55.000 0.00 0.00 40.05 4.11
88 89 1.308998 CGCCCATCATAGGACAAACC 58.691 55.000 0.00 0.00 39.35 3.27
89 90 1.670811 CACGCCCATCATAGGACAAAC 59.329 52.381 0.00 0.00 0.00 2.93
90 91 1.280710 ACACGCCCATCATAGGACAAA 59.719 47.619 0.00 0.00 0.00 2.83
91 92 0.908910 ACACGCCCATCATAGGACAA 59.091 50.000 0.00 0.00 0.00 3.18
92 93 0.908910 AACACGCCCATCATAGGACA 59.091 50.000 0.00 0.00 0.00 4.02
93 94 1.299541 CAACACGCCCATCATAGGAC 58.700 55.000 0.00 0.00 0.00 3.85
94 95 0.180171 CCAACACGCCCATCATAGGA 59.820 55.000 0.00 0.00 0.00 2.94
95 96 0.180171 TCCAACACGCCCATCATAGG 59.820 55.000 0.00 0.00 0.00 2.57
96 97 1.586422 CTCCAACACGCCCATCATAG 58.414 55.000 0.00 0.00 0.00 2.23
97 98 0.463654 GCTCCAACACGCCCATCATA 60.464 55.000 0.00 0.00 0.00 2.15
98 99 1.750399 GCTCCAACACGCCCATCAT 60.750 57.895 0.00 0.00 0.00 2.45
99 100 2.359850 GCTCCAACACGCCCATCA 60.360 61.111 0.00 0.00 0.00 3.07
100 101 2.045926 AGCTCCAACACGCCCATC 60.046 61.111 0.00 0.00 0.00 3.51
101 102 2.360350 CAGCTCCAACACGCCCAT 60.360 61.111 0.00 0.00 0.00 4.00
106 107 2.048597 TACCGCAGCTCCAACACG 60.049 61.111 0.00 0.00 0.00 4.49
107 108 3.876300 CTACCGCAGCTCCAACAC 58.124 61.111 0.00 0.00 0.00 3.32
117 118 1.143838 CCTGCATACTGCTACCGCA 59.856 57.895 0.34 0.00 45.31 5.69
118 119 1.595382 CCCTGCATACTGCTACCGC 60.595 63.158 0.34 0.00 45.31 5.68
119 120 0.681733 ATCCCTGCATACTGCTACCG 59.318 55.000 0.34 0.00 45.31 4.02
120 121 1.694150 TCATCCCTGCATACTGCTACC 59.306 52.381 0.34 0.00 45.31 3.18
121 122 3.134458 GTTCATCCCTGCATACTGCTAC 58.866 50.000 0.34 0.00 45.31 3.58
122 123 2.771372 TGTTCATCCCTGCATACTGCTA 59.229 45.455 0.34 0.00 45.31 3.49
123 124 1.561076 TGTTCATCCCTGCATACTGCT 59.439 47.619 0.34 0.00 45.31 4.24
124 125 2.042686 TGTTCATCCCTGCATACTGC 57.957 50.000 0.00 0.00 45.29 4.40
125 126 2.882761 CCATGTTCATCCCTGCATACTG 59.117 50.000 0.00 0.00 0.00 2.74
126 127 2.511218 ACCATGTTCATCCCTGCATACT 59.489 45.455 0.00 0.00 0.00 2.12
127 128 2.880890 GACCATGTTCATCCCTGCATAC 59.119 50.000 0.00 0.00 0.00 2.39
128 129 2.509131 TGACCATGTTCATCCCTGCATA 59.491 45.455 0.00 0.00 0.00 3.14
129 130 1.285667 TGACCATGTTCATCCCTGCAT 59.714 47.619 0.00 0.00 0.00 3.96
130 131 0.697658 TGACCATGTTCATCCCTGCA 59.302 50.000 0.00 0.00 0.00 4.41
131 132 1.340405 ACTGACCATGTTCATCCCTGC 60.340 52.381 0.00 0.00 0.00 4.85
132 133 2.795231 ACTGACCATGTTCATCCCTG 57.205 50.000 0.00 0.00 0.00 4.45
133 134 2.505819 GGTACTGACCATGTTCATCCCT 59.494 50.000 0.00 0.00 46.12 4.20
134 135 2.919228 GGTACTGACCATGTTCATCCC 58.081 52.381 0.00 0.00 46.12 3.85
146 147 0.381089 CGATGACCCGAGGTACTGAC 59.619 60.000 0.00 0.00 41.55 3.51
147 148 0.750546 CCGATGACCCGAGGTACTGA 60.751 60.000 0.00 0.00 41.55 3.41
148 149 1.734137 CCGATGACCCGAGGTACTG 59.266 63.158 0.00 0.00 41.55 2.74
150 151 1.952102 TTGCCGATGACCCGAGGTAC 61.952 60.000 0.00 0.00 35.25 3.34
151 152 1.259142 TTTGCCGATGACCCGAGGTA 61.259 55.000 0.00 0.00 35.25 3.08
152 153 1.910580 ATTTGCCGATGACCCGAGGT 61.911 55.000 0.00 0.00 39.44 3.85
153 154 0.748005 AATTTGCCGATGACCCGAGG 60.748 55.000 0.00 0.00 0.00 4.63
154 155 0.378257 CAATTTGCCGATGACCCGAG 59.622 55.000 0.00 0.00 0.00 4.63
155 156 0.322098 ACAATTTGCCGATGACCCGA 60.322 50.000 0.00 0.00 0.00 5.14
156 157 0.525761 AACAATTTGCCGATGACCCG 59.474 50.000 0.00 0.00 0.00 5.28
157 158 1.818674 AGAACAATTTGCCGATGACCC 59.181 47.619 0.00 0.00 0.00 4.46
158 159 3.181500 GGTAGAACAATTTGCCGATGACC 60.181 47.826 0.00 0.00 0.00 4.02
159 160 3.181500 GGGTAGAACAATTTGCCGATGAC 60.181 47.826 0.00 0.00 0.00 3.06
160 161 3.013921 GGGTAGAACAATTTGCCGATGA 58.986 45.455 0.00 0.00 0.00 2.92
161 162 2.223249 CGGGTAGAACAATTTGCCGATG 60.223 50.000 5.31 0.00 0.00 3.84
162 163 2.014128 CGGGTAGAACAATTTGCCGAT 58.986 47.619 5.31 0.00 0.00 4.18
163 164 1.444836 CGGGTAGAACAATTTGCCGA 58.555 50.000 5.31 0.00 0.00 5.54
164 165 0.450184 CCGGGTAGAACAATTTGCCG 59.550 55.000 0.00 0.39 0.00 5.69
165 166 1.201414 CACCGGGTAGAACAATTTGCC 59.799 52.381 6.32 0.00 0.00 4.52
166 167 1.883926 ACACCGGGTAGAACAATTTGC 59.116 47.619 6.32 0.00 0.00 3.68
167 168 5.413213 TCATAACACCGGGTAGAACAATTTG 59.587 40.000 6.32 0.00 0.00 2.32
168 169 5.562635 TCATAACACCGGGTAGAACAATTT 58.437 37.500 6.32 0.00 0.00 1.82
169 170 5.168647 TCATAACACCGGGTAGAACAATT 57.831 39.130 6.32 0.00 0.00 2.32
170 171 4.829872 TCATAACACCGGGTAGAACAAT 57.170 40.909 6.32 0.00 0.00 2.71
171 172 4.317488 GTTCATAACACCGGGTAGAACAA 58.683 43.478 6.32 0.00 36.61 2.83
172 173 3.306919 GGTTCATAACACCGGGTAGAACA 60.307 47.826 22.24 1.60 37.50 3.18
173 174 3.264947 GGTTCATAACACCGGGTAGAAC 58.735 50.000 6.32 14.54 36.22 3.01
174 175 2.236893 GGGTTCATAACACCGGGTAGAA 59.763 50.000 6.32 4.22 34.79 2.10
175 176 1.832998 GGGTTCATAACACCGGGTAGA 59.167 52.381 6.32 0.00 34.79 2.59
176 177 1.835531 AGGGTTCATAACACCGGGTAG 59.164 52.381 6.32 0.00 34.56 3.18
177 178 1.955451 AGGGTTCATAACACCGGGTA 58.045 50.000 6.32 0.00 34.56 3.69
178 179 1.556451 GTAGGGTTCATAACACCGGGT 59.444 52.381 6.32 0.00 34.56 5.28
179 180 1.555992 TGTAGGGTTCATAACACCGGG 59.444 52.381 6.32 0.00 34.56 5.73
180 181 2.235402 ACTGTAGGGTTCATAACACCGG 59.765 50.000 0.00 0.00 34.56 5.28
181 182 3.604875 ACTGTAGGGTTCATAACACCG 57.395 47.619 0.00 0.00 34.56 4.94
182 183 7.163441 TCTAAAACTGTAGGGTTCATAACACC 58.837 38.462 0.00 0.00 34.56 4.16
183 184 8.092687 TCTCTAAAACTGTAGGGTTCATAACAC 58.907 37.037 0.00 0.00 34.10 3.32
184 185 8.092687 GTCTCTAAAACTGTAGGGTTCATAACA 58.907 37.037 0.00 0.00 0.00 2.41
185 186 7.548427 GGTCTCTAAAACTGTAGGGTTCATAAC 59.452 40.741 0.00 0.00 0.00 1.89
186 187 7.236019 TGGTCTCTAAAACTGTAGGGTTCATAA 59.764 37.037 0.00 0.00 0.00 1.90
187 188 6.727231 TGGTCTCTAAAACTGTAGGGTTCATA 59.273 38.462 0.00 0.00 0.00 2.15
188 189 5.546499 TGGTCTCTAAAACTGTAGGGTTCAT 59.454 40.000 0.00 0.00 0.00 2.57
189 190 4.903049 TGGTCTCTAAAACTGTAGGGTTCA 59.097 41.667 0.00 0.00 0.00 3.18
190 191 5.479124 TGGTCTCTAAAACTGTAGGGTTC 57.521 43.478 0.00 0.00 0.00 3.62
191 192 6.183361 ACAATGGTCTCTAAAACTGTAGGGTT 60.183 38.462 0.00 0.00 0.00 4.11
192 193 5.309806 ACAATGGTCTCTAAAACTGTAGGGT 59.690 40.000 0.00 0.00 0.00 4.34
193 194 5.805728 ACAATGGTCTCTAAAACTGTAGGG 58.194 41.667 0.00 0.00 0.00 3.53
194 195 7.584987 CAAACAATGGTCTCTAAAACTGTAGG 58.415 38.462 0.00 0.00 0.00 3.18
195 196 7.078228 GCAAACAATGGTCTCTAAAACTGTAG 58.922 38.462 0.00 0.00 0.00 2.74
196 197 6.016610 GGCAAACAATGGTCTCTAAAACTGTA 60.017 38.462 0.00 0.00 0.00 2.74
197 198 5.221244 GGCAAACAATGGTCTCTAAAACTGT 60.221 40.000 0.00 0.00 0.00 3.55
198 199 5.221224 TGGCAAACAATGGTCTCTAAAACTG 60.221 40.000 0.00 0.00 0.00 3.16
199 200 4.892934 TGGCAAACAATGGTCTCTAAAACT 59.107 37.500 0.00 0.00 0.00 2.66
200 201 4.982295 GTGGCAAACAATGGTCTCTAAAAC 59.018 41.667 0.00 0.00 0.00 2.43
201 202 4.261405 CGTGGCAAACAATGGTCTCTAAAA 60.261 41.667 0.00 0.00 0.00 1.52
202 203 3.252215 CGTGGCAAACAATGGTCTCTAAA 59.748 43.478 0.00 0.00 0.00 1.85
203 204 2.811431 CGTGGCAAACAATGGTCTCTAA 59.189 45.455 0.00 0.00 0.00 2.10
204 205 2.037902 TCGTGGCAAACAATGGTCTCTA 59.962 45.455 0.00 0.00 0.00 2.43
205 206 1.202758 TCGTGGCAAACAATGGTCTCT 60.203 47.619 0.00 0.00 0.00 3.10
206 207 1.197721 CTCGTGGCAAACAATGGTCTC 59.802 52.381 0.00 0.00 0.00 3.36
207 208 1.238439 CTCGTGGCAAACAATGGTCT 58.762 50.000 0.00 0.00 0.00 3.85
208 209 0.240945 CCTCGTGGCAAACAATGGTC 59.759 55.000 0.00 0.00 0.00 4.02
209 210 2.340427 CCTCGTGGCAAACAATGGT 58.660 52.632 0.00 0.00 0.00 3.55
220 221 0.798776 CAAGTGCTAAAGCCTCGTGG 59.201 55.000 0.00 0.00 41.18 4.94
221 222 0.166814 GCAAGTGCTAAAGCCTCGTG 59.833 55.000 0.00 3.23 41.18 4.35
222 223 0.250295 TGCAAGTGCTAAAGCCTCGT 60.250 50.000 4.69 0.00 42.66 4.18
223 224 0.445436 CTGCAAGTGCTAAAGCCTCG 59.555 55.000 4.69 0.00 42.66 4.63
224 225 0.169894 GCTGCAAGTGCTAAAGCCTC 59.830 55.000 4.69 0.00 42.66 4.70
225 226 0.251077 AGCTGCAAGTGCTAAAGCCT 60.251 50.000 1.02 0.00 38.05 4.58
226 227 0.109412 CAGCTGCAAGTGCTAAAGCC 60.109 55.000 0.00 0.00 38.05 4.35
227 228 0.877071 TCAGCTGCAAGTGCTAAAGC 59.123 50.000 9.47 5.48 42.66 3.51
228 229 3.008330 AGATCAGCTGCAAGTGCTAAAG 58.992 45.455 9.47 0.00 42.66 1.85
229 230 3.063510 AGATCAGCTGCAAGTGCTAAA 57.936 42.857 9.47 0.00 42.66 1.85
230 231 2.775911 AGATCAGCTGCAAGTGCTAA 57.224 45.000 9.47 0.00 42.66 3.09
231 232 3.640498 AGATAGATCAGCTGCAAGTGCTA 59.360 43.478 9.47 4.39 42.66 3.49
232 233 2.435069 AGATAGATCAGCTGCAAGTGCT 59.565 45.455 9.47 0.00 42.66 4.40
233 234 2.836262 AGATAGATCAGCTGCAAGTGC 58.164 47.619 9.47 0.00 42.50 4.40
234 235 4.035324 CCAAAGATAGATCAGCTGCAAGTG 59.965 45.833 9.47 0.00 35.30 3.16
235 236 4.080695 TCCAAAGATAGATCAGCTGCAAGT 60.081 41.667 9.47 0.00 35.30 3.16
236 237 4.449131 TCCAAAGATAGATCAGCTGCAAG 58.551 43.478 9.47 0.00 0.00 4.01
237 238 4.492494 TCCAAAGATAGATCAGCTGCAA 57.508 40.909 9.47 0.00 0.00 4.08
238 239 4.102054 TGATCCAAAGATAGATCAGCTGCA 59.898 41.667 9.47 0.00 42.98 4.41
239 240 4.639334 TGATCCAAAGATAGATCAGCTGC 58.361 43.478 9.47 0.00 42.98 5.25
246 247 9.224267 CGATTACCAAATGATCCAAAGATAGAT 57.776 33.333 0.00 0.00 30.90 1.98
247 248 7.173218 GCGATTACCAAATGATCCAAAGATAGA 59.827 37.037 0.00 0.00 30.90 1.98
248 249 7.173907 AGCGATTACCAAATGATCCAAAGATAG 59.826 37.037 0.00 0.00 30.90 2.08
249 250 6.998074 AGCGATTACCAAATGATCCAAAGATA 59.002 34.615 0.00 0.00 30.90 1.98
250 251 5.829924 AGCGATTACCAAATGATCCAAAGAT 59.170 36.000 0.00 0.00 34.57 2.40
251 252 5.192927 AGCGATTACCAAATGATCCAAAGA 58.807 37.500 0.00 0.00 0.00 2.52
252 253 5.505173 AGCGATTACCAAATGATCCAAAG 57.495 39.130 0.00 0.00 0.00 2.77
253 254 6.038161 CACTAGCGATTACCAAATGATCCAAA 59.962 38.462 0.00 0.00 0.00 3.28
254 255 5.527214 CACTAGCGATTACCAAATGATCCAA 59.473 40.000 0.00 0.00 0.00 3.53
255 256 5.056480 CACTAGCGATTACCAAATGATCCA 58.944 41.667 0.00 0.00 0.00 3.41
256 257 5.177696 GTCACTAGCGATTACCAAATGATCC 59.822 44.000 0.00 0.00 0.00 3.36
257 258 5.986135 AGTCACTAGCGATTACCAAATGATC 59.014 40.000 0.00 0.00 0.00 2.92
258 259 5.755375 CAGTCACTAGCGATTACCAAATGAT 59.245 40.000 0.00 0.00 0.00 2.45
259 260 5.109210 CAGTCACTAGCGATTACCAAATGA 58.891 41.667 0.00 0.00 0.00 2.57
260 261 4.260375 GCAGTCACTAGCGATTACCAAATG 60.260 45.833 0.00 0.00 0.00 2.32
261 262 3.871594 GCAGTCACTAGCGATTACCAAAT 59.128 43.478 0.00 0.00 0.00 2.32
262 263 3.259064 GCAGTCACTAGCGATTACCAAA 58.741 45.455 0.00 0.00 0.00 3.28
263 264 2.232696 TGCAGTCACTAGCGATTACCAA 59.767 45.455 0.00 0.00 0.00 3.67
264 265 1.822371 TGCAGTCACTAGCGATTACCA 59.178 47.619 0.00 0.00 0.00 3.25
265 266 2.579207 TGCAGTCACTAGCGATTACC 57.421 50.000 0.00 0.00 0.00 2.85
266 267 3.491267 GGATTGCAGTCACTAGCGATTAC 59.509 47.826 11.67 0.00 35.07 1.89
267 268 3.717707 GGATTGCAGTCACTAGCGATTA 58.282 45.455 11.67 0.00 35.07 1.75
268 269 2.555199 GGATTGCAGTCACTAGCGATT 58.445 47.619 11.67 0.00 35.07 3.34
269 270 1.536922 CGGATTGCAGTCACTAGCGAT 60.537 52.381 11.67 2.57 37.56 4.58
270 271 0.179137 CGGATTGCAGTCACTAGCGA 60.179 55.000 11.67 0.00 0.00 4.93
271 272 0.179137 TCGGATTGCAGTCACTAGCG 60.179 55.000 11.67 5.12 0.00 4.26
272 273 2.231215 ATCGGATTGCAGTCACTAGC 57.769 50.000 11.67 0.00 0.00 3.42
273 274 3.308053 CACAATCGGATTGCAGTCACTAG 59.692 47.826 26.31 3.67 43.98 2.57
274 275 3.261580 CACAATCGGATTGCAGTCACTA 58.738 45.455 26.31 0.00 43.98 2.74
275 276 2.079158 CACAATCGGATTGCAGTCACT 58.921 47.619 26.31 6.32 43.98 3.41
276 277 1.131126 CCACAATCGGATTGCAGTCAC 59.869 52.381 26.31 0.00 43.98 3.67
277 278 1.003003 TCCACAATCGGATTGCAGTCA 59.997 47.619 26.31 7.32 43.98 3.41
278 279 1.737838 TCCACAATCGGATTGCAGTC 58.262 50.000 26.31 0.00 43.98 3.51
279 280 2.019249 CATCCACAATCGGATTGCAGT 58.981 47.619 26.31 8.34 43.58 4.40
280 281 2.032550 GTCATCCACAATCGGATTGCAG 59.967 50.000 26.31 19.51 43.58 4.41
281 282 2.016318 GTCATCCACAATCGGATTGCA 58.984 47.619 26.31 13.63 43.58 4.08
282 283 2.016318 TGTCATCCACAATCGGATTGC 58.984 47.619 26.31 11.66 43.58 3.56
283 284 3.878699 TGATGTCATCCACAATCGGATTG 59.121 43.478 25.13 25.13 43.58 2.67
284 285 4.155063 TGATGTCATCCACAATCGGATT 57.845 40.909 10.36 0.00 43.58 3.01
286 287 3.843893 ATGATGTCATCCACAATCGGA 57.156 42.857 10.36 0.00 38.97 4.55
287 288 6.375945 TTTTATGATGTCATCCACAATCGG 57.624 37.500 10.36 0.00 38.97 4.18
288 289 6.432936 CCTTTTATGATGTCATCCACAATCG 58.567 40.000 10.36 0.00 38.97 3.34
289 290 6.239120 CCCCTTTTATGATGTCATCCACAATC 60.239 42.308 10.36 0.00 38.97 2.67
290 291 5.599656 CCCCTTTTATGATGTCATCCACAAT 59.400 40.000 10.36 0.00 38.97 2.71
291 292 4.955450 CCCCTTTTATGATGTCATCCACAA 59.045 41.667 10.36 0.00 38.97 3.33
292 293 4.017591 ACCCCTTTTATGATGTCATCCACA 60.018 41.667 10.36 0.00 40.18 4.17
293 294 4.536765 ACCCCTTTTATGATGTCATCCAC 58.463 43.478 10.36 0.00 37.76 4.02
294 295 4.879295 ACCCCTTTTATGATGTCATCCA 57.121 40.909 10.36 0.00 37.76 3.41
295 296 5.073144 TCCTACCCCTTTTATGATGTCATCC 59.927 44.000 10.36 0.00 37.76 3.51
296 297 6.187727 TCCTACCCCTTTTATGATGTCATC 57.812 41.667 5.83 5.83 37.76 2.92
297 298 5.073691 CCTCCTACCCCTTTTATGATGTCAT 59.926 44.000 0.68 0.68 40.22 3.06
298 299 4.412199 CCTCCTACCCCTTTTATGATGTCA 59.588 45.833 0.00 0.00 0.00 3.58
299 300 4.747009 GCCTCCTACCCCTTTTATGATGTC 60.747 50.000 0.00 0.00 0.00 3.06
300 301 3.138468 GCCTCCTACCCCTTTTATGATGT 59.862 47.826 0.00 0.00 0.00 3.06
301 302 3.395941 AGCCTCCTACCCCTTTTATGATG 59.604 47.826 0.00 0.00 0.00 3.07
302 303 3.653352 GAGCCTCCTACCCCTTTTATGAT 59.347 47.826 0.00 0.00 0.00 2.45
303 304 3.046374 GAGCCTCCTACCCCTTTTATGA 58.954 50.000 0.00 0.00 0.00 2.15
304 305 3.049344 AGAGCCTCCTACCCCTTTTATG 58.951 50.000 0.00 0.00 0.00 1.90
305 306 3.311402 TGAGAGCCTCCTACCCCTTTTAT 60.311 47.826 0.00 0.00 0.00 1.40
306 307 2.045326 TGAGAGCCTCCTACCCCTTTTA 59.955 50.000 0.00 0.00 0.00 1.52
307 308 1.203440 TGAGAGCCTCCTACCCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
308 309 0.417841 TGAGAGCCTCCTACCCCTTT 59.582 55.000 0.00 0.00 0.00 3.11
309 310 0.644937 ATGAGAGCCTCCTACCCCTT 59.355 55.000 0.00 0.00 0.00 3.95
310 311 1.547099 TATGAGAGCCTCCTACCCCT 58.453 55.000 0.00 0.00 0.00 4.79
311 312 2.225394 TGATATGAGAGCCTCCTACCCC 60.225 54.545 0.00 0.00 0.00 4.95
312 313 2.829120 GTGATATGAGAGCCTCCTACCC 59.171 54.545 0.00 0.00 0.00 3.69
313 314 3.501349 TGTGATATGAGAGCCTCCTACC 58.499 50.000 0.00 0.00 0.00 3.18
314 315 4.148838 ACTGTGATATGAGAGCCTCCTAC 58.851 47.826 0.00 0.00 0.00 3.18
315 316 4.402829 GACTGTGATATGAGAGCCTCCTA 58.597 47.826 0.00 0.00 0.00 2.94
316 317 3.230134 GACTGTGATATGAGAGCCTCCT 58.770 50.000 0.00 0.00 0.00 3.69
317 318 2.030363 CGACTGTGATATGAGAGCCTCC 60.030 54.545 0.00 0.00 0.00 4.30
318 319 2.621055 ACGACTGTGATATGAGAGCCTC 59.379 50.000 0.00 0.00 0.00 4.70
319 320 2.621055 GACGACTGTGATATGAGAGCCT 59.379 50.000 0.00 0.00 0.00 4.58
320 321 2.359214 TGACGACTGTGATATGAGAGCC 59.641 50.000 0.00 0.00 0.00 4.70
321 322 3.699779 TGACGACTGTGATATGAGAGC 57.300 47.619 0.00 0.00 0.00 4.09
322 323 5.491635 TCTTGACGACTGTGATATGAGAG 57.508 43.478 0.00 0.00 0.00 3.20
323 324 5.648092 TCTTCTTGACGACTGTGATATGAGA 59.352 40.000 0.00 0.00 0.00 3.27
324 325 5.884771 TCTTCTTGACGACTGTGATATGAG 58.115 41.667 0.00 0.00 0.00 2.90
325 326 5.897377 TCTTCTTGACGACTGTGATATGA 57.103 39.130 0.00 0.00 0.00 2.15
326 327 8.634475 TTTATCTTCTTGACGACTGTGATATG 57.366 34.615 0.00 0.00 0.00 1.78
329 330 9.823647 ATTATTTATCTTCTTGACGACTGTGAT 57.176 29.630 0.00 0.00 0.00 3.06
371 372 8.999431 ACATTCGAACATAAAATCACAACTAGT 58.001 29.630 0.00 0.00 0.00 2.57
372 373 9.478019 GACATTCGAACATAAAATCACAACTAG 57.522 33.333 0.00 0.00 0.00 2.57
373 374 8.166066 CGACATTCGAACATAAAATCACAACTA 58.834 33.333 0.00 0.00 43.74 2.24
374 375 7.015289 CGACATTCGAACATAAAATCACAACT 58.985 34.615 0.00 0.00 43.74 3.16
375 376 6.795114 ACGACATTCGAACATAAAATCACAAC 59.205 34.615 0.00 0.00 43.74 3.32
376 377 6.794636 CACGACATTCGAACATAAAATCACAA 59.205 34.615 0.00 0.00 43.74 3.33
377 378 6.303370 CACGACATTCGAACATAAAATCACA 58.697 36.000 0.00 0.00 43.74 3.58
378 379 5.225129 GCACGACATTCGAACATAAAATCAC 59.775 40.000 0.00 0.00 43.74 3.06
379 380 5.121611 AGCACGACATTCGAACATAAAATCA 59.878 36.000 0.00 0.00 43.74 2.57
380 381 5.560148 AGCACGACATTCGAACATAAAATC 58.440 37.500 0.00 0.00 43.74 2.17
381 382 5.447279 GGAGCACGACATTCGAACATAAAAT 60.447 40.000 0.00 0.00 43.74 1.82
382 383 4.142988 GGAGCACGACATTCGAACATAAAA 60.143 41.667 0.00 0.00 43.74 1.52
383 384 3.369756 GGAGCACGACATTCGAACATAAA 59.630 43.478 0.00 0.00 43.74 1.40
384 385 2.927477 GGAGCACGACATTCGAACATAA 59.073 45.455 0.00 0.00 43.74 1.90
385 386 2.536365 GGAGCACGACATTCGAACATA 58.464 47.619 0.00 0.00 43.74 2.29
386 387 1.359848 GGAGCACGACATTCGAACAT 58.640 50.000 0.00 0.00 43.74 2.71
387 388 2.822306 GGAGCACGACATTCGAACA 58.178 52.632 0.00 0.00 43.74 3.18
398 399 1.424493 GCCTTCTGATTCGGAGCACG 61.424 60.000 2.68 0.00 46.11 5.34
399 400 0.107945 AGCCTTCTGATTCGGAGCAC 60.108 55.000 8.84 0.00 0.00 4.40
400 401 0.176680 GAGCCTTCTGATTCGGAGCA 59.823 55.000 8.84 0.00 0.00 4.26
401 402 0.176680 TGAGCCTTCTGATTCGGAGC 59.823 55.000 0.00 0.00 0.00 4.70
402 403 1.205655 TGTGAGCCTTCTGATTCGGAG 59.794 52.381 0.00 0.00 0.00 4.63
403 404 1.266178 TGTGAGCCTTCTGATTCGGA 58.734 50.000 0.00 0.00 0.00 4.55
404 405 2.099141 TTGTGAGCCTTCTGATTCGG 57.901 50.000 0.00 0.00 0.00 4.30
405 406 3.529533 AGATTGTGAGCCTTCTGATTCG 58.470 45.455 0.00 0.00 0.00 3.34
406 407 4.699257 ACAAGATTGTGAGCCTTCTGATTC 59.301 41.667 0.00 0.00 40.49 2.52
407 408 4.660168 ACAAGATTGTGAGCCTTCTGATT 58.340 39.130 0.00 0.00 40.49 2.57
408 409 4.298103 ACAAGATTGTGAGCCTTCTGAT 57.702 40.909 0.00 0.00 40.49 2.90
409 410 3.777106 ACAAGATTGTGAGCCTTCTGA 57.223 42.857 0.00 0.00 40.49 3.27
410 411 5.947228 TTTACAAGATTGTGAGCCTTCTG 57.053 39.130 8.46 0.00 42.31 3.02
411 412 6.959639 TTTTTACAAGATTGTGAGCCTTCT 57.040 33.333 8.46 0.00 42.31 2.85
432 433 3.792716 CGGAAGCGAGGCAATTTTT 57.207 47.368 0.00 0.00 0.00 1.94
451 452 3.673484 CCACAAGCGGCAACCCTG 61.673 66.667 1.45 0.00 0.00 4.45
461 462 1.751351 GAGGGGAAATAAGCCACAAGC 59.249 52.381 0.00 0.00 44.25 4.01
462 463 3.085952 TGAGGGGAAATAAGCCACAAG 57.914 47.619 0.00 0.00 0.00 3.16
463 464 3.011144 TCATGAGGGGAAATAAGCCACAA 59.989 43.478 0.00 0.00 0.00 3.33
464 465 2.580322 TCATGAGGGGAAATAAGCCACA 59.420 45.455 0.00 0.00 0.00 4.17
465 466 2.952310 GTCATGAGGGGAAATAAGCCAC 59.048 50.000 0.00 0.00 0.00 5.01
466 467 2.091885 GGTCATGAGGGGAAATAAGCCA 60.092 50.000 0.00 0.00 0.00 4.75
467 468 2.587522 GGTCATGAGGGGAAATAAGCC 58.412 52.381 0.00 0.00 0.00 4.35
468 469 2.587522 GGGTCATGAGGGGAAATAAGC 58.412 52.381 0.00 0.00 0.00 3.09
469 470 2.158460 GGGGGTCATGAGGGGAAATAAG 60.158 54.545 0.00 0.00 0.00 1.73
470 471 1.856920 GGGGGTCATGAGGGGAAATAA 59.143 52.381 0.00 0.00 0.00 1.40
471 472 1.012049 AGGGGGTCATGAGGGGAAATA 59.988 52.381 0.00 0.00 0.00 1.40
472 473 0.254299 AGGGGGTCATGAGGGGAAAT 60.254 55.000 0.00 0.00 0.00 2.17
473 474 0.479589 AAGGGGGTCATGAGGGGAAA 60.480 55.000 0.00 0.00 0.00 3.13
474 475 0.479589 AAAGGGGGTCATGAGGGGAA 60.480 55.000 0.00 0.00 0.00 3.97
475 476 0.423956 TAAAGGGGGTCATGAGGGGA 59.576 55.000 0.00 0.00 0.00 4.81
476 477 1.425448 GATAAAGGGGGTCATGAGGGG 59.575 57.143 0.00 0.00 0.00 4.79
477 478 1.425448 GGATAAAGGGGGTCATGAGGG 59.575 57.143 0.00 0.00 0.00 4.30
478 479 1.425448 GGGATAAAGGGGGTCATGAGG 59.575 57.143 0.00 0.00 0.00 3.86
479 480 2.422746 AGGGATAAAGGGGGTCATGAG 58.577 52.381 0.00 0.00 0.00 2.90
480 481 2.605825 AGGGATAAAGGGGGTCATGA 57.394 50.000 0.00 0.00 0.00 3.07
481 482 3.052944 TCAAAGGGATAAAGGGGGTCATG 60.053 47.826 0.00 0.00 0.00 3.07
482 483 3.206464 TCAAAGGGATAAAGGGGGTCAT 58.794 45.455 0.00 0.00 0.00 3.06
483 484 2.650013 TCAAAGGGATAAAGGGGGTCA 58.350 47.619 0.00 0.00 0.00 4.02
484 485 3.750501 TTCAAAGGGATAAAGGGGGTC 57.249 47.619 0.00 0.00 0.00 4.46
485 486 7.678992 ATATATTCAAAGGGATAAAGGGGGT 57.321 36.000 0.00 0.00 0.00 4.95
486 487 8.972662 AAATATATTCAAAGGGATAAAGGGGG 57.027 34.615 0.00 0.00 0.00 5.40
509 510 9.612066 GGATCCCATGCTTTATTAATTTGAAAA 57.388 29.630 0.00 0.00 0.00 2.29
510 511 8.210265 GGGATCCCATGCTTTATTAATTTGAAA 58.790 33.333 26.95 0.00 35.81 2.69
511 512 7.568366 AGGGATCCCATGCTTTATTAATTTGAA 59.432 33.333 32.69 0.00 38.92 2.69
512 513 7.075148 AGGGATCCCATGCTTTATTAATTTGA 58.925 34.615 32.69 0.00 38.92 2.69
513 514 7.307131 AGGGATCCCATGCTTTATTAATTTG 57.693 36.000 32.69 0.00 38.92 2.32
514 515 7.936026 AAGGGATCCCATGCTTTATTAATTT 57.064 32.000 32.69 9.86 38.92 1.82
515 516 9.445973 TTTAAGGGATCCCATGCTTTATTAATT 57.554 29.630 32.69 15.02 38.92 1.40
516 517 9.445973 TTTTAAGGGATCCCATGCTTTATTAAT 57.554 29.630 32.69 3.83 38.92 1.40
517 518 8.846423 TTTTAAGGGATCCCATGCTTTATTAA 57.154 30.769 32.69 20.64 38.92 1.40
518 519 8.285891 TCTTTTAAGGGATCCCATGCTTTATTA 58.714 33.333 32.69 16.12 38.92 0.98
519 520 7.132128 TCTTTTAAGGGATCCCATGCTTTATT 58.868 34.615 32.69 17.16 38.92 1.40
520 521 6.682537 TCTTTTAAGGGATCCCATGCTTTAT 58.317 36.000 32.69 6.30 38.92 1.40
521 522 6.086011 TCTTTTAAGGGATCCCATGCTTTA 57.914 37.500 32.69 18.27 38.92 1.85
522 523 4.946646 TCTTTTAAGGGATCCCATGCTTT 58.053 39.130 32.69 19.33 38.92 3.51
523 524 4.608170 TCTTTTAAGGGATCCCATGCTT 57.392 40.909 32.69 19.71 38.92 3.91
524 525 4.608170 TTCTTTTAAGGGATCCCATGCT 57.392 40.909 32.69 15.75 38.92 3.79
525 526 5.129320 ACATTTCTTTTAAGGGATCCCATGC 59.871 40.000 32.69 5.51 38.92 4.06
526 527 6.155049 ACACATTTCTTTTAAGGGATCCCATG 59.845 38.462 32.69 23.43 38.92 3.66
527 528 6.263754 ACACATTTCTTTTAAGGGATCCCAT 58.736 36.000 32.69 23.83 38.92 4.00
528 529 5.650283 ACACATTTCTTTTAAGGGATCCCA 58.350 37.500 32.69 10.51 38.92 4.37
529 530 7.014326 GGATACACATTTCTTTTAAGGGATCCC 59.986 40.741 24.59 24.59 0.00 3.85
530 531 7.559897 TGGATACACATTTCTTTTAAGGGATCC 59.440 37.037 1.92 1.92 46.17 3.36
531 532 8.519799 TGGATACACATTTCTTTTAAGGGATC 57.480 34.615 0.00 0.00 46.17 3.36
550 551 3.589988 CGAGGAGGCAATGTATGGATAC 58.410 50.000 0.00 0.00 0.00 2.24
551 552 2.567169 CCGAGGAGGCAATGTATGGATA 59.433 50.000 0.00 0.00 0.00 2.59
552 553 1.349026 CCGAGGAGGCAATGTATGGAT 59.651 52.381 0.00 0.00 0.00 3.41
553 554 0.758734 CCGAGGAGGCAATGTATGGA 59.241 55.000 0.00 0.00 0.00 3.41
554 555 0.250467 CCCGAGGAGGCAATGTATGG 60.250 60.000 0.00 0.00 39.21 2.74
555 556 0.469917 ACCCGAGGAGGCAATGTATG 59.530 55.000 0.00 0.00 39.21 2.39
556 557 1.134098 CAACCCGAGGAGGCAATGTAT 60.134 52.381 0.00 0.00 39.21 2.29
557 558 0.251916 CAACCCGAGGAGGCAATGTA 59.748 55.000 0.00 0.00 39.21 2.29
558 559 1.002134 CAACCCGAGGAGGCAATGT 60.002 57.895 0.00 0.00 39.21 2.71
559 560 1.750399 CCAACCCGAGGAGGCAATG 60.750 63.158 0.00 0.00 39.21 2.82
560 561 2.677228 CCAACCCGAGGAGGCAAT 59.323 61.111 0.00 0.00 39.21 3.56
561 562 3.646715 CCCAACCCGAGGAGGCAA 61.647 66.667 0.00 0.00 39.21 4.52
562 563 4.974438 ACCCAACCCGAGGAGGCA 62.974 66.667 0.00 0.00 39.21 4.75
563 564 3.623703 GAACCCAACCCGAGGAGGC 62.624 68.421 0.00 0.00 39.21 4.70
564 565 2.669240 GAACCCAACCCGAGGAGG 59.331 66.667 0.00 0.00 40.63 4.30
565 566 1.489560 AAGGAACCCAACCCGAGGAG 61.490 60.000 0.00 0.00 0.00 3.69
566 567 1.063654 AAAGGAACCCAACCCGAGGA 61.064 55.000 0.00 0.00 0.00 3.71
567 568 0.608308 GAAAGGAACCCAACCCGAGG 60.608 60.000 0.00 0.00 0.00 4.63
568 569 0.608308 GGAAAGGAACCCAACCCGAG 60.608 60.000 0.00 0.00 0.00 4.63
569 570 1.354168 TGGAAAGGAACCCAACCCGA 61.354 55.000 0.00 0.00 0.00 5.14
570 571 0.468400 TTGGAAAGGAACCCAACCCG 60.468 55.000 0.00 0.00 37.50 5.28
571 572 3.543112 TTGGAAAGGAACCCAACCC 57.457 52.632 0.00 0.00 37.50 4.11
574 575 2.763448 CAACAGTTGGAAAGGAACCCAA 59.237 45.455 5.25 0.00 39.88 4.12
575 576 2.383855 CAACAGTTGGAAAGGAACCCA 58.616 47.619 5.25 0.00 0.00 4.51
576 577 1.068588 GCAACAGTTGGAAAGGAACCC 59.931 52.381 15.28 0.00 0.00 4.11
577 578 1.068588 GGCAACAGTTGGAAAGGAACC 59.931 52.381 15.28 1.27 0.00 3.62
578 579 1.754226 TGGCAACAGTTGGAAAGGAAC 59.246 47.619 15.28 0.00 46.17 3.62
579 580 2.151502 TGGCAACAGTTGGAAAGGAA 57.848 45.000 15.28 0.00 46.17 3.36
580 581 3.913855 TGGCAACAGTTGGAAAGGA 57.086 47.368 15.28 0.00 46.17 3.36
628 629 1.340017 ACGGCTTGGAATGTGCTATGT 60.340 47.619 0.00 0.00 0.00 2.29
633 634 0.099436 GATCACGGCTTGGAATGTGC 59.901 55.000 0.00 0.00 32.48 4.57
634 635 0.734889 GGATCACGGCTTGGAATGTG 59.265 55.000 0.00 0.00 0.00 3.21
667 678 0.967887 CTCCCTCTCTTGTGCTCCGA 60.968 60.000 0.00 0.00 0.00 4.55
688 711 1.981256 ACCCGTGACTCAAAATGCTT 58.019 45.000 0.00 0.00 0.00 3.91
858 897 3.316588 TCAAAGCTTGTTGTTTATGCGGA 59.683 39.130 0.00 0.00 0.00 5.54
951 991 1.906105 ATAAACCTTGGCTCCGGCGA 61.906 55.000 9.30 0.00 39.81 5.54
961 1001 4.509600 GCTACTGCTAGCTGATAAACCTTG 59.490 45.833 26.29 6.02 42.11 3.61
1002 1045 3.818773 GGTGTCTTAGAGGAGCTAGCTAG 59.181 52.174 19.38 16.84 0.00 3.42
1003 1046 3.202373 TGGTGTCTTAGAGGAGCTAGCTA 59.798 47.826 19.38 0.00 0.00 3.32
1078 1127 1.080995 CGGGAAGAAGAAGCAGAGCG 61.081 60.000 0.00 0.00 0.00 5.03
1209 1258 3.179830 GCAAGAAGAATGCATGCAAGAG 58.820 45.455 26.68 9.81 43.29 2.85
1213 1262 1.258676 TGGCAAGAAGAATGCATGCA 58.741 45.000 25.04 25.04 45.60 3.96
1215 1264 2.201732 GCATGGCAAGAAGAATGCATG 58.798 47.619 0.00 0.00 45.60 4.06
1218 1267 2.373540 TTGCATGGCAAGAAGAATGC 57.626 45.000 0.00 0.00 43.99 3.56
1229 1278 3.054878 GGAATTCGATGAATTGCATGGC 58.945 45.455 15.89 0.11 45.33 4.40
1236 1305 3.206150 CACGGGAGGAATTCGATGAATT 58.794 45.455 4.54 4.54 43.77 2.17
1237 1306 2.170607 ACACGGGAGGAATTCGATGAAT 59.829 45.455 0.00 0.00 33.25 2.57
1246 1316 1.339151 GCTTCAGAACACGGGAGGAAT 60.339 52.381 0.00 0.00 0.00 3.01
1269 1339 2.224090 TGACGAACGAACAAATGGGAGA 60.224 45.455 0.14 0.00 0.00 3.71
1272 1342 2.139917 TCTGACGAACGAACAAATGGG 58.860 47.619 0.14 0.00 0.00 4.00
1273 1343 3.186409 ACATCTGACGAACGAACAAATGG 59.814 43.478 0.14 0.00 0.00 3.16
1274 1344 4.084589 TCACATCTGACGAACGAACAAATG 60.085 41.667 0.14 6.18 0.00 2.32
1275 1345 4.055360 TCACATCTGACGAACGAACAAAT 58.945 39.130 0.14 0.00 0.00 2.32
1276 1346 3.449632 TCACATCTGACGAACGAACAAA 58.550 40.909 0.14 0.00 0.00 2.83
1277 1347 3.086818 TCACATCTGACGAACGAACAA 57.913 42.857 0.14 0.00 0.00 2.83
1278 1348 2.785713 TCACATCTGACGAACGAACA 57.214 45.000 0.14 0.62 0.00 3.18
1279 1349 2.408704 CCTTCACATCTGACGAACGAAC 59.591 50.000 0.14 0.00 0.00 3.95
1281 1351 1.611977 ACCTTCACATCTGACGAACGA 59.388 47.619 0.14 0.00 0.00 3.85
1282 1352 1.986378 GACCTTCACATCTGACGAACG 59.014 52.381 0.00 0.00 0.00 3.95
1302 1375 0.867329 TGATCGCGCAGTCGATTCTG 60.867 55.000 8.75 0.00 43.96 3.02
1325 1398 3.121030 CCTTGGAAGCCGTGCTCG 61.121 66.667 0.14 0.14 38.25 5.03
1649 1725 1.935065 GAAGAGCGACGTGTTGAGCG 61.935 60.000 0.00 0.00 34.34 5.03
1651 1727 2.095668 AGTAGAAGAGCGACGTGTTGAG 60.096 50.000 0.00 0.00 0.00 3.02
1652 1728 1.878088 AGTAGAAGAGCGACGTGTTGA 59.122 47.619 0.00 0.00 0.00 3.18
1653 1729 1.979469 CAGTAGAAGAGCGACGTGTTG 59.021 52.381 0.00 0.00 0.00 3.33
1737 1813 2.269241 GGCGGGGGAGTGAAGAAG 59.731 66.667 0.00 0.00 0.00 2.85
1761 1837 1.226262 CGGGAATGGGAACGGGAAT 59.774 57.895 0.00 0.00 0.00 3.01
1809 1885 3.961414 GGGAAAGCCGGTGGTGGA 61.961 66.667 1.90 0.00 33.83 4.02
1815 1891 1.726192 AAGGGAAAGGGAAAGCCGGT 61.726 55.000 1.90 0.00 33.83 5.28
1875 1951 0.744771 GAGGGAACTGGAACGATGGC 60.745 60.000 0.00 0.00 44.43 4.40
2059 2147 4.410400 AAAGGAAGGCGGCGGAGG 62.410 66.667 9.78 0.00 0.00 4.30
2060 2148 2.820037 GAAAGGAAGGCGGCGGAG 60.820 66.667 9.78 0.00 0.00 4.63
2130 2218 0.620556 TTGAAGGTGGAGGAGATGGC 59.379 55.000 0.00 0.00 0.00 4.40
2160 2248 0.036010 ACCAGGTGCTCGGATCTTTG 60.036 55.000 0.00 0.00 0.00 2.77
2241 2358 1.084289 GTCCCCAACACGAGCATAAC 58.916 55.000 0.00 0.00 0.00 1.89
2243 2360 1.216977 CGTCCCCAACACGAGCATA 59.783 57.895 0.00 0.00 39.75 3.14
2244 2361 2.047274 CGTCCCCAACACGAGCAT 60.047 61.111 0.00 0.00 39.75 3.79
2253 2370 1.423541 CCATTATCCATCCGTCCCCAA 59.576 52.381 0.00 0.00 0.00 4.12
2255 2372 0.328258 CCCATTATCCATCCGTCCCC 59.672 60.000 0.00 0.00 0.00 4.81
2265 2382 3.901844 TCTGCCTAGTACACCCATTATCC 59.098 47.826 0.00 0.00 0.00 2.59
2266 2383 5.246203 TCATCTGCCTAGTACACCCATTATC 59.754 44.000 0.00 0.00 0.00 1.75
2270 2387 3.046283 TCATCTGCCTAGTACACCCAT 57.954 47.619 0.00 0.00 0.00 4.00
2350 2483 9.799106 TCATCTCAAAAAGAGGAAATTAAGTCT 57.201 29.630 0.00 0.00 41.63 3.24
2457 2593 9.364989 CAATAGAAATTCAAATAGCCGGAAAAA 57.635 29.630 5.05 0.00 0.00 1.94
2482 2620 1.302112 TTTCCAGAATCGCACCGCA 60.302 52.632 0.00 0.00 0.00 5.69
2525 2663 3.334583 TGGTGTCTTACTTCCTCATGC 57.665 47.619 0.00 0.00 0.00 4.06
2533 2671 8.046708 TGCAATATACATCTTGGTGTCTTACTT 58.953 33.333 0.00 0.00 33.62 2.24
2534 2672 7.564793 TGCAATATACATCTTGGTGTCTTACT 58.435 34.615 0.00 0.00 33.62 2.24
2535 2673 7.786178 TGCAATATACATCTTGGTGTCTTAC 57.214 36.000 0.00 0.00 33.62 2.34
2544 4930 8.988934 ACGGTAACTATTGCAATATACATCTTG 58.011 33.333 22.61 12.15 0.00 3.02
2550 4936 8.578308 TGTACACGGTAACTATTGCAATATAC 57.422 34.615 19.17 17.76 0.00 1.47
2574 4960 8.889000 CATATTATGATTTGCGCGATGAATATG 58.111 33.333 12.10 12.17 31.88 1.78
2627 5013 4.593634 ACTATCCCTGGAAGTACTTATGCC 59.406 45.833 8.42 6.49 0.00 4.40
2633 5019 9.503369 AAAACTATTACTATCCCTGGAAGTACT 57.497 33.333 0.00 0.00 0.00 2.73
2637 6240 7.775561 AGCAAAAACTATTACTATCCCTGGAAG 59.224 37.037 0.00 0.00 0.00 3.46
2714 6319 1.675641 GATGGAGCGCAACTGGGTT 60.676 57.895 11.47 0.00 0.00 4.11
2753 6411 6.402550 CGTCGATGAACAATTTTCTCTCCATT 60.403 38.462 0.00 0.00 0.00 3.16
2754 6412 5.063944 CGTCGATGAACAATTTTCTCTCCAT 59.936 40.000 0.00 0.00 0.00 3.41
2755 6413 4.388773 CGTCGATGAACAATTTTCTCTCCA 59.611 41.667 0.00 0.00 0.00 3.86
2756 6414 4.625742 TCGTCGATGAACAATTTTCTCTCC 59.374 41.667 4.45 0.00 0.00 3.71
2761 6419 3.187637 TGGGTCGTCGATGAACAATTTTC 59.812 43.478 23.52 6.24 0.00 2.29
2764 6422 2.465860 TGGGTCGTCGATGAACAATT 57.534 45.000 23.52 0.00 0.00 2.32
2765 6423 2.691409 ATGGGTCGTCGATGAACAAT 57.309 45.000 23.52 15.75 0.00 2.71
2818 6476 9.855021 AACTTCCTTGTATATTAATTGTGTTGC 57.145 29.630 0.00 0.00 0.00 4.17
2874 6535 4.099573 TCTGGTGCCAGTAATCTAGCTAAC 59.900 45.833 16.85 0.00 43.96 2.34
2897 6558 3.683802 CCCAATCTCTTCACTCTTTGCT 58.316 45.455 0.00 0.00 0.00 3.91
2898 6559 2.163211 GCCCAATCTCTTCACTCTTTGC 59.837 50.000 0.00 0.00 0.00 3.68
2907 6568 4.542075 GGGTCGCCCAATCTCTTC 57.458 61.111 9.72 0.00 44.65 2.87
2990 6651 1.072331 TCTCAGTTCTGGACCTTTGGC 59.928 52.381 0.00 0.00 0.00 4.52
3012 6673 0.767375 AGCTCAACACACATCTGGGT 59.233 50.000 0.00 0.00 34.47 4.51
3109 6795 7.767198 GGTAGGAGTACATATTAAGCACAACAA 59.233 37.037 0.00 0.00 0.00 2.83
3110 6796 7.125204 AGGTAGGAGTACATATTAAGCACAACA 59.875 37.037 0.00 0.00 0.00 3.33
3111 6797 7.498443 AGGTAGGAGTACATATTAAGCACAAC 58.502 38.462 0.00 0.00 0.00 3.32
3124 6810 9.656323 AAATAGAATACATGAGGTAGGAGTACA 57.344 33.333 0.00 0.00 34.92 2.90
3154 6840 1.292223 CTGACCACCGATCAACCGT 59.708 57.895 0.00 0.00 0.00 4.83
3163 6849 1.966451 GCTTCCAACCTGACCACCG 60.966 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.