Multiple sequence alignment - TraesCS2D01G433200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G433200 chr2D 100.000 4846 0 0 1 4846 544881084 544885929 0.000000e+00 8949.0
1 TraesCS2D01G433200 chr2D 97.645 552 11 2 321 870 612544565 612544014 0.000000e+00 946.0
2 TraesCS2D01G433200 chr2D 93.827 81 5 0 1497 1577 607282409 607282489 6.590000e-24 122.0
3 TraesCS2D01G433200 chr2D 89.773 88 4 1 1497 1579 619321093 619321006 1.840000e-19 108.0
4 TraesCS2D01G433200 chr2D 87.356 87 10 1 3873 3959 82182009 82181924 1.110000e-16 99.0
5 TraesCS2D01G433200 chr2A 93.290 1550 81 12 2192 3736 688621695 688620164 0.000000e+00 2265.0
6 TraesCS2D01G433200 chr2A 94.206 932 47 5 3917 4846 688620046 688619120 0.000000e+00 1415.0
7 TraesCS2D01G433200 chr2A 93.893 524 22 5 922 1442 688622740 688622224 0.000000e+00 782.0
8 TraesCS2D01G433200 chr2A 85.656 244 25 6 1 235 688623105 688622863 1.040000e-61 248.0
9 TraesCS2D01G433200 chr2A 88.827 179 19 1 1603 1780 688622159 688621981 8.170000e-53 219.0
10 TraesCS2D01G433200 chr2A 89.535 86 4 1 1496 1576 690730465 690730380 2.390000e-18 104.0
11 TraesCS2D01G433200 chr2A 87.500 88 9 1 1804 1891 581960064 581959979 3.090000e-17 100.0
12 TraesCS2D01G433200 chr2A 87.778 90 6 2 1495 1579 603084271 603084182 3.090000e-17 100.0
13 TraesCS2D01G433200 chr2A 97.222 36 1 0 2945 2980 688620526 688620491 1.460000e-05 62.1
14 TraesCS2D01G433200 chr2B 86.678 1171 99 39 1887 3038 651360459 651361591 0.000000e+00 1245.0
15 TraesCS2D01G433200 chr2B 88.350 927 64 16 3956 4846 651362571 651363489 0.000000e+00 1074.0
16 TraesCS2D01G433200 chr2B 89.646 792 40 16 3164 3917 651361788 651362575 0.000000e+00 970.0
17 TraesCS2D01G433200 chr2B 95.362 539 19 4 924 1458 651359673 651360209 0.000000e+00 852.0
18 TraesCS2D01G433200 chr2B 86.810 326 35 6 1 323 651359287 651359607 1.660000e-94 357.0
19 TraesCS2D01G433200 chr2B 93.056 144 10 0 1604 1747 651360269 651360412 1.370000e-50 211.0
20 TraesCS2D01G433200 chr2B 87.234 94 11 1 3866 3959 134045548 134045456 6.630000e-19 106.0
21 TraesCS2D01G433200 chr2B 87.912 91 6 1 1494 1579 17024023 17023933 8.580000e-18 102.0
22 TraesCS2D01G433200 chr2B 86.813 91 9 2 1804 1893 69342498 69342410 1.110000e-16 99.0
23 TraesCS2D01G433200 chr1D 99.273 550 4 0 322 871 364840152 364839603 0.000000e+00 994.0
24 TraesCS2D01G433200 chr1D 97.459 551 12 2 322 870 410455289 410455839 0.000000e+00 939.0
25 TraesCS2D01G433200 chr1D 92.063 63 3 2 3892 3954 258339621 258339681 2.400000e-13 87.9
26 TraesCS2D01G433200 chr1D 93.333 45 3 0 3915 3959 305588315 305588271 3.130000e-07 67.6
27 TraesCS2D01G433200 chr7D 99.271 549 3 1 322 870 457113343 457113890 0.000000e+00 990.0
28 TraesCS2D01G433200 chr7D 98.370 552 7 2 321 870 608122522 608121971 0.000000e+00 968.0
29 TraesCS2D01G433200 chr7D 98.007 552 9 2 322 871 525913638 525914189 0.000000e+00 957.0
30 TraesCS2D01G433200 chr7D 89.157 83 8 1 3873 3955 573982369 573982288 8.580000e-18 102.0
31 TraesCS2D01G433200 chr7D 88.608 79 8 1 3870 3948 117234577 117234500 1.440000e-15 95.3
32 TraesCS2D01G433200 chr3D 98.373 553 7 2 322 872 91802953 91803505 0.000000e+00 970.0
33 TraesCS2D01G433200 chr3D 95.745 47 1 1 3910 3956 514267452 514267497 1.870000e-09 75.0
34 TraesCS2D01G433200 chr5D 97.658 555 9 3 320 872 275196275 275196827 0.000000e+00 950.0
35 TraesCS2D01G433200 chr5D 97.459 551 12 2 322 870 58020294 58020844 0.000000e+00 939.0
36 TraesCS2D01G433200 chr5D 89.655 87 4 1 1497 1578 382868411 382868497 6.630000e-19 106.0
37 TraesCS2D01G433200 chr5D 92.500 40 3 0 3920 3959 451129166 451129127 1.880000e-04 58.4
38 TraesCS2D01G433200 chr7B 95.402 87 2 1 1804 1890 716962920 716962836 2.350000e-28 137.0
39 TraesCS2D01G433200 chr7B 92.683 82 4 1 1803 1884 17550290 17550211 3.060000e-22 117.0
40 TraesCS2D01G433200 chr7B 84.524 84 12 1 3865 3948 77428129 77428047 1.120000e-11 82.4
41 TraesCS2D01G433200 chr7A 95.402 87 2 1 1804 1890 715695239 715695323 2.350000e-28 137.0
42 TraesCS2D01G433200 chr7A 88.776 98 8 3 3865 3960 121396116 121396020 3.060000e-22 117.0
43 TraesCS2D01G433200 chr1B 91.667 96 6 2 1796 1889 15881525 15881620 1.090000e-26 132.0
44 TraesCS2D01G433200 chr5A 93.976 83 3 1 1803 1885 6596095 6596175 1.830000e-24 124.0
45 TraesCS2D01G433200 chr5A 87.234 94 7 3 1497 1585 419210125 419210218 8.580000e-18 102.0
46 TraesCS2D01G433200 chr6D 88.421 95 6 2 1487 1576 134695805 134695711 5.130000e-20 110.0
47 TraesCS2D01G433200 chr1A 88.043 92 8 3 3862 3953 343398419 343398331 6.630000e-19 106.0
48 TraesCS2D01G433200 chr1A 90.278 72 6 1 3884 3955 343398336 343398406 5.160000e-15 93.5
49 TraesCS2D01G433200 chr1A 87.209 86 6 3 3882 3965 581594224 581594142 5.160000e-15 93.5
50 TraesCS2D01G433200 chr6B 89.024 82 8 1 3873 3954 124550587 124550507 3.090000e-17 100.0
51 TraesCS2D01G433200 chr6A 87.234 94 5 3 1497 1585 216181626 216181717 3.090000e-17 100.0
52 TraesCS2D01G433200 chr6A 86.364 88 9 2 3873 3960 69358366 69358282 5.160000e-15 93.5
53 TraesCS2D01G433200 chr6A 95.000 40 2 0 3909 3948 427446046 427446085 4.050000e-06 63.9
54 TraesCS2D01G433200 chr4D 87.097 93 7 4 1810 1899 261087266 261087176 3.090000e-17 100.0
55 TraesCS2D01G433200 chr4D 84.091 88 9 4 3873 3960 490141803 490141721 4.020000e-11 80.5
56 TraesCS2D01G433200 chr4D 82.653 98 7 3 3873 3960 36591523 36591620 1.450000e-10 78.7
57 TraesCS2D01G433200 chr4D 90.196 51 4 1 3901 3951 435644927 435644878 1.130000e-06 65.8
58 TraesCS2D01G433200 chr4B 94.737 57 2 1 3904 3960 53590599 53590654 2.400000e-13 87.9
59 TraesCS2D01G433200 chr4B 83.505 97 11 5 3866 3959 545061383 545061289 8.640000e-13 86.1
60 TraesCS2D01G433200 chr4B 88.889 63 5 2 3867 3928 498405267 498405206 5.200000e-10 76.8
61 TraesCS2D01G433200 chr3A 87.179 78 8 1 1814 1891 423489413 423489488 2.400000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G433200 chr2D 544881084 544885929 4845 False 8949.000000 8949 100.000000 1 4846 1 chr2D.!!$F1 4845
1 TraesCS2D01G433200 chr2D 612544014 612544565 551 True 946.000000 946 97.645000 321 870 1 chr2D.!!$R2 549
2 TraesCS2D01G433200 chr2A 688619120 688623105 3985 True 831.850000 2265 92.182333 1 4846 6 chr2A.!!$R4 4845
3 TraesCS2D01G433200 chr2B 651359287 651363489 4202 False 784.833333 1245 89.983667 1 4846 6 chr2B.!!$F1 4845
4 TraesCS2D01G433200 chr1D 364839603 364840152 549 True 994.000000 994 99.273000 322 871 1 chr1D.!!$R2 549
5 TraesCS2D01G433200 chr1D 410455289 410455839 550 False 939.000000 939 97.459000 322 870 1 chr1D.!!$F2 548
6 TraesCS2D01G433200 chr7D 457113343 457113890 547 False 990.000000 990 99.271000 322 870 1 chr7D.!!$F1 548
7 TraesCS2D01G433200 chr7D 608121971 608122522 551 True 968.000000 968 98.370000 321 870 1 chr7D.!!$R3 549
8 TraesCS2D01G433200 chr7D 525913638 525914189 551 False 957.000000 957 98.007000 322 871 1 chr7D.!!$F2 549
9 TraesCS2D01G433200 chr3D 91802953 91803505 552 False 970.000000 970 98.373000 322 872 1 chr3D.!!$F1 550
10 TraesCS2D01G433200 chr5D 275196275 275196827 552 False 950.000000 950 97.658000 320 872 1 chr5D.!!$F2 552
11 TraesCS2D01G433200 chr5D 58020294 58020844 550 False 939.000000 939 97.459000 322 870 1 chr5D.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 67 0.314935 AATGCGTTTCCTTGGTGCTG 59.685 50.0 0.0 0.0 0.00 4.41 F
71 74 0.403655 TTCCTTGGTGCTGGCATACA 59.596 50.0 0.0 0.0 0.00 2.29 F
1442 1483 0.109689 GTCCGTGAACTGGAGTCTCG 60.110 60.0 0.0 0.0 35.82 4.04 F
1606 1656 0.106918 TTGAGCAACGTGTCCCCTTT 60.107 50.0 0.0 0.0 0.00 3.11 F
1674 1724 0.110644 CGAAAAGGCGAGTTCAGCAC 60.111 55.0 0.0 0.0 36.08 4.40 F
2085 2147 0.599558 CATGGCCCTTCACACTGTTG 59.400 55.0 0.0 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1428 0.244994 CTGACGAACTCCTGGACCAG 59.755 60.000 15.15 15.15 0.00 4.00 R
1475 1516 0.530744 TACGTAGCAAGTGAGCCAGG 59.469 55.000 0.00 0.00 34.23 4.45 R
2797 2888 1.066929 CAACTGCCTTTGGGGTATTGC 60.067 52.381 0.00 0.00 37.43 3.56 R
3336 3531 1.196127 CGTAAAGTGAAGGAAACCCGC 59.804 52.381 0.00 0.00 0.00 6.13 R
3590 3786 1.956869 TCATCCACCAGATCACCAGT 58.043 50.000 0.00 0.00 30.59 4.00 R
4027 4251 3.192633 ACCAGCAAAAGAACTGAAACGTT 59.807 39.130 0.00 0.00 35.90 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 6.974622 ACATTGTTTTTAACTGTTCTCTGCTG 59.025 34.615 0.00 0.00 0.00 4.41
39 41 2.246719 AACTGTTCTCTGCTGTCACC 57.753 50.000 0.00 0.00 0.00 4.02
50 52 1.440850 CTGTCACCGTTGCAATGCG 60.441 57.895 13.42 7.80 0.00 4.73
53 56 0.593773 GTCACCGTTGCAATGCGTTT 60.594 50.000 13.42 0.00 0.00 3.60
64 67 0.314935 AATGCGTTTCCTTGGTGCTG 59.685 50.000 0.00 0.00 0.00 4.41
71 74 0.403655 TTCCTTGGTGCTGGCATACA 59.596 50.000 0.00 0.00 0.00 2.29
75 78 1.470098 CTTGGTGCTGGCATACACTTC 59.530 52.381 17.17 5.72 36.99 3.01
76 79 0.692476 TGGTGCTGGCATACACTTCT 59.308 50.000 17.17 0.00 36.99 2.85
79 83 2.154462 GTGCTGGCATACACTTCTGTT 58.846 47.619 12.17 0.00 33.92 3.16
86 90 3.689649 GGCATACACTTCTGTTCGGAAAT 59.310 43.478 0.00 0.00 0.00 2.17
91 95 4.451900 ACACTTCTGTTCGGAAATCTTGT 58.548 39.130 0.00 0.00 0.00 3.16
92 96 5.607477 ACACTTCTGTTCGGAAATCTTGTA 58.393 37.500 0.00 0.00 0.00 2.41
93 97 5.696724 ACACTTCTGTTCGGAAATCTTGTAG 59.303 40.000 0.00 0.00 0.00 2.74
94 98 5.696724 CACTTCTGTTCGGAAATCTTGTAGT 59.303 40.000 0.00 0.00 0.00 2.73
99 103 7.636326 TCTGTTCGGAAATCTTGTAGTTTTTC 58.364 34.615 0.00 0.00 0.00 2.29
179 188 2.633488 CGAAATTCCCCTTCTGAGACC 58.367 52.381 0.00 0.00 0.00 3.85
182 191 4.265893 GAAATTCCCCTTCTGAGACCTTC 58.734 47.826 0.00 0.00 0.00 3.46
183 192 2.415983 TTCCCCTTCTGAGACCTTCA 57.584 50.000 0.00 0.00 0.00 3.02
281 290 4.385825 ACATTTGCGAACTTCTGAGGTTA 58.614 39.130 5.06 0.00 0.00 2.85
295 304 8.328758 ACTTCTGAGGTTATGTATGAAATTCCA 58.671 33.333 0.00 0.00 0.00 3.53
300 309 9.308000 TGAGGTTATGTATGAAATTCCAGTTTT 57.692 29.630 0.00 0.00 0.00 2.43
312 321 4.993029 TTCCAGTTTTTGTAACACCCTG 57.007 40.909 0.00 0.00 0.00 4.45
313 322 4.237976 TCCAGTTTTTGTAACACCCTGA 57.762 40.909 0.00 0.00 0.00 3.86
314 323 4.204012 TCCAGTTTTTGTAACACCCTGAG 58.796 43.478 0.00 0.00 0.00 3.35
315 324 3.243401 CCAGTTTTTGTAACACCCTGAGC 60.243 47.826 0.00 0.00 0.00 4.26
316 325 3.380004 CAGTTTTTGTAACACCCTGAGCA 59.620 43.478 0.00 0.00 0.00 4.26
317 326 4.020543 AGTTTTTGTAACACCCTGAGCAA 58.979 39.130 0.00 0.00 0.00 3.91
318 327 4.464597 AGTTTTTGTAACACCCTGAGCAAA 59.535 37.500 0.00 0.00 0.00 3.68
1387 1428 1.828224 GGCATCCCGGGAATTCACC 60.828 63.158 30.84 20.08 0.00 4.02
1406 1447 0.244994 CTGGTCCAGGAGTTCGTCAG 59.755 60.000 11.46 0.00 0.00 3.51
1442 1483 0.109689 GTCCGTGAACTGGAGTCTCG 60.110 60.000 0.00 0.00 35.82 4.04
1444 1485 1.524863 CCGTGAACTGGAGTCTCGGT 61.525 60.000 6.73 0.00 33.90 4.69
1445 1486 0.109689 CGTGAACTGGAGTCTCGGTC 60.110 60.000 0.00 0.00 0.00 4.79
1446 1487 1.249407 GTGAACTGGAGTCTCGGTCT 58.751 55.000 0.00 0.00 0.00 3.85
1451 1492 0.244994 CTGGAGTCTCGGTCTGGTTG 59.755 60.000 0.00 0.00 0.00 3.77
1452 1493 0.469331 TGGAGTCTCGGTCTGGTTGT 60.469 55.000 0.00 0.00 0.00 3.32
1453 1494 0.244178 GGAGTCTCGGTCTGGTTGTC 59.756 60.000 0.00 0.00 0.00 3.18
1454 1495 0.244178 GAGTCTCGGTCTGGTTGTCC 59.756 60.000 0.00 0.00 0.00 4.02
1455 1496 0.178958 AGTCTCGGTCTGGTTGTCCT 60.179 55.000 0.00 0.00 34.23 3.85
1456 1497 0.680061 GTCTCGGTCTGGTTGTCCTT 59.320 55.000 0.00 0.00 34.23 3.36
1457 1498 0.966920 TCTCGGTCTGGTTGTCCTTC 59.033 55.000 0.00 0.00 34.23 3.46
1458 1499 0.679505 CTCGGTCTGGTTGTCCTTCA 59.320 55.000 0.00 0.00 34.23 3.02
1459 1500 1.070134 CTCGGTCTGGTTGTCCTTCAA 59.930 52.381 0.00 0.00 34.23 2.69
1460 1501 1.487142 TCGGTCTGGTTGTCCTTCAAA 59.513 47.619 0.00 0.00 37.81 2.69
1467 1508 2.306847 GGTTGTCCTTCAAAGGCTTCA 58.693 47.619 0.00 1.39 46.06 3.02
1472 1513 3.243839 TGTCCTTCAAAGGCTTCAATTGC 60.244 43.478 0.00 0.00 46.06 3.56
1478 1519 3.302129 GGCTTCAATTGCCCCCTG 58.698 61.111 0.00 0.00 44.32 4.45
1489 1530 3.655211 CCCCCTGGCTCACTTGCT 61.655 66.667 0.00 0.00 0.00 3.91
1490 1531 2.300967 CCCCCTGGCTCACTTGCTA 61.301 63.158 0.00 0.00 0.00 3.49
1491 1532 1.078143 CCCCTGGCTCACTTGCTAC 60.078 63.158 0.00 0.00 0.00 3.58
1492 1533 1.448540 CCCTGGCTCACTTGCTACG 60.449 63.158 0.00 0.00 0.00 3.51
1493 1534 1.293498 CCTGGCTCACTTGCTACGT 59.707 57.895 0.00 0.00 0.00 3.57
1494 1535 0.530744 CCTGGCTCACTTGCTACGTA 59.469 55.000 0.00 0.00 0.00 3.57
1495 1536 1.469940 CCTGGCTCACTTGCTACGTAG 60.470 57.143 18.47 18.47 0.00 3.51
1497 1538 2.422479 CTGGCTCACTTGCTACGTAGTA 59.578 50.000 22.98 16.78 45.11 1.82
1498 1539 2.163010 TGGCTCACTTGCTACGTAGTAC 59.837 50.000 22.98 8.70 45.11 2.73
1499 1540 2.422832 GGCTCACTTGCTACGTAGTACT 59.577 50.000 22.98 0.00 45.11 2.73
1500 1541 3.487209 GGCTCACTTGCTACGTAGTACTC 60.487 52.174 22.98 7.64 45.11 2.59
1501 1542 3.487209 GCTCACTTGCTACGTAGTACTCC 60.487 52.174 22.98 7.27 45.11 3.85
1502 1543 3.012518 TCACTTGCTACGTAGTACTCCC 58.987 50.000 22.98 6.57 45.11 4.30
1503 1544 3.015327 CACTTGCTACGTAGTACTCCCT 58.985 50.000 22.98 0.00 45.11 4.20
1504 1545 3.065095 CACTTGCTACGTAGTACTCCCTC 59.935 52.174 22.98 5.17 45.11 4.30
1505 1546 2.338577 TGCTACGTAGTACTCCCTCC 57.661 55.000 22.98 4.48 45.11 4.30
1506 1547 1.224965 GCTACGTAGTACTCCCTCCG 58.775 60.000 22.98 0.00 45.11 4.63
1507 1548 1.876322 CTACGTAGTACTCCCTCCGG 58.124 60.000 14.66 0.00 45.11 5.14
1508 1549 0.179045 TACGTAGTACTCCCTCCGGC 60.179 60.000 0.00 0.00 45.11 6.13
1509 1550 2.192187 CGTAGTACTCCCTCCGGCC 61.192 68.421 0.00 0.00 0.00 6.13
1510 1551 1.831726 GTAGTACTCCCTCCGGCCC 60.832 68.421 0.00 0.00 0.00 5.80
1511 1552 2.318966 TAGTACTCCCTCCGGCCCA 61.319 63.158 0.00 0.00 0.00 5.36
1512 1553 1.661990 TAGTACTCCCTCCGGCCCAT 61.662 60.000 0.00 0.00 0.00 4.00
1513 1554 1.152398 GTACTCCCTCCGGCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
1514 1555 0.761702 GTACTCCCTCCGGCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
1515 1556 0.192566 TACTCCCTCCGGCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
1516 1557 0.192566 ACTCCCTCCGGCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
1517 1558 1.203440 ACTCCCTCCGGCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
1518 1559 2.045326 ACTCCCTCCGGCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
1519 1560 3.112263 CTCCCTCCGGCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
1520 1561 3.112263 TCCCTCCGGCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
1521 1562 3.112263 CCCTCCGGCCCATAATATAAGA 58.888 50.000 0.00 0.00 0.00 2.10
1522 1563 3.134804 CCCTCCGGCCCATAATATAAGAG 59.865 52.174 0.00 0.00 0.00 2.85
1523 1564 3.432326 CCTCCGGCCCATAATATAAGAGC 60.432 52.174 0.00 0.00 0.00 4.09
1524 1565 3.178046 TCCGGCCCATAATATAAGAGCA 58.822 45.455 0.00 0.00 0.00 4.26
1525 1566 3.780294 TCCGGCCCATAATATAAGAGCAT 59.220 43.478 0.00 0.00 0.00 3.79
1526 1567 4.227300 TCCGGCCCATAATATAAGAGCATT 59.773 41.667 0.00 0.00 0.00 3.56
1527 1568 4.949856 CCGGCCCATAATATAAGAGCATTT 59.050 41.667 0.00 0.00 0.00 2.32
1528 1569 5.418840 CCGGCCCATAATATAAGAGCATTTT 59.581 40.000 0.00 0.00 0.00 1.82
1529 1570 6.071391 CCGGCCCATAATATAAGAGCATTTTT 60.071 38.462 0.00 0.00 0.00 1.94
1530 1571 6.808212 CGGCCCATAATATAAGAGCATTTTTG 59.192 38.462 0.00 0.00 0.00 2.44
1531 1572 7.309133 CGGCCCATAATATAAGAGCATTTTTGA 60.309 37.037 0.00 0.00 0.00 2.69
1532 1573 7.814587 GGCCCATAATATAAGAGCATTTTTGAC 59.185 37.037 0.00 0.00 0.00 3.18
1533 1574 8.359642 GCCCATAATATAAGAGCATTTTTGACA 58.640 33.333 0.00 0.00 0.00 3.58
1534 1575 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
1562 1603 8.767944 GTGTCAAAGACGCTTTTATATTATGG 57.232 34.615 3.62 0.00 39.62 2.74
1563 1604 7.855904 GTGTCAAAGACGCTTTTATATTATGGG 59.144 37.037 3.62 0.00 39.62 4.00
1564 1605 7.771361 TGTCAAAGACGCTTTTATATTATGGGA 59.229 33.333 2.65 0.00 34.95 4.37
1565 1606 8.068380 GTCAAAGACGCTTTTATATTATGGGAC 58.932 37.037 2.65 0.00 0.00 4.46
1566 1607 6.780706 AAGACGCTTTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1567 1608 5.235516 AGACGCTTTTATATTATGGGACGG 58.764 41.667 0.00 0.00 0.00 4.79
1568 1609 5.011329 AGACGCTTTTATATTATGGGACGGA 59.989 40.000 0.00 0.00 0.00 4.69
1569 1610 5.235516 ACGCTTTTATATTATGGGACGGAG 58.764 41.667 0.00 0.00 0.00 4.63
1570 1611 4.630069 CGCTTTTATATTATGGGACGGAGG 59.370 45.833 0.00 0.00 0.00 4.30
1571 1612 4.941873 GCTTTTATATTATGGGACGGAGGG 59.058 45.833 0.00 0.00 0.00 4.30
1572 1613 5.280317 GCTTTTATATTATGGGACGGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
1576 1617 2.376695 TTATGGGACGGAGGGACTAG 57.623 55.000 0.00 0.00 41.55 2.57
1579 1620 0.549950 TGGGACGGAGGGACTAGTAG 59.450 60.000 0.00 0.00 41.55 2.57
1594 1635 5.488341 GACTAGTAGATTTGGGTTGAGCAA 58.512 41.667 3.59 0.00 0.00 3.91
1598 1639 1.608590 AGATTTGGGTTGAGCAACGTG 59.391 47.619 7.21 0.00 42.02 4.49
1600 1641 0.736053 TTTGGGTTGAGCAACGTGTC 59.264 50.000 7.21 0.00 42.02 3.67
1601 1642 1.098712 TTGGGTTGAGCAACGTGTCC 61.099 55.000 7.21 3.87 42.02 4.02
1606 1656 0.106918 TTGAGCAACGTGTCCCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
1632 1682 2.564471 GCTTCTTGCAGCTGTGGAT 58.436 52.632 16.64 0.00 42.31 3.41
1674 1724 0.110644 CGAAAAGGCGAGTTCAGCAC 60.111 55.000 0.00 0.00 36.08 4.40
1677 1727 2.770164 AAAGGCGAGTTCAGCACTAT 57.230 45.000 0.00 0.00 35.01 2.12
1683 1733 2.603560 GCGAGTTCAGCACTATGGTTAC 59.396 50.000 0.00 0.00 35.01 2.50
1734 1784 8.547481 TCTTGTAAGTATATGACCATCCAGAA 57.453 34.615 0.00 0.00 0.00 3.02
1758 1808 3.808834 TCTTCCCTCTGTGACTCTGTA 57.191 47.619 0.00 0.00 0.00 2.74
1764 1815 2.692557 CCTCTGTGACTCTGTATCCCTG 59.307 54.545 0.00 0.00 0.00 4.45
1770 1821 2.234661 TGACTCTGTATCCCTGTTGCAG 59.765 50.000 0.00 0.00 0.00 4.41
1780 1831 4.267349 TCCCTGTTGCAGTTAGTTAGTC 57.733 45.455 0.00 0.00 0.00 2.59
1781 1832 3.644265 TCCCTGTTGCAGTTAGTTAGTCA 59.356 43.478 0.00 0.00 0.00 3.41
1784 1835 4.686554 CCTGTTGCAGTTAGTTAGTCAGAC 59.313 45.833 0.00 0.00 0.00 3.51
1786 1837 5.529791 TGTTGCAGTTAGTTAGTCAGACTC 58.470 41.667 6.27 0.00 0.00 3.36
1790 1849 4.617645 GCAGTTAGTTAGTCAGACTCGTTG 59.382 45.833 6.27 0.00 0.00 4.10
1799 1858 3.128349 GTCAGACTCGTTGCCTTGTTTA 58.872 45.455 0.00 0.00 0.00 2.01
1802 1861 4.038282 TCAGACTCGTTGCCTTGTTTAGTA 59.962 41.667 0.00 0.00 0.00 1.82
1805 1864 6.034683 CAGACTCGTTGCCTTGTTTAGTATAC 59.965 42.308 0.00 0.00 0.00 1.47
1807 1866 6.461640 ACTCGTTGCCTTGTTTAGTATACTT 58.538 36.000 11.40 0.00 0.00 2.24
1808 1867 6.589139 ACTCGTTGCCTTGTTTAGTATACTTC 59.411 38.462 11.40 3.37 0.00 3.01
1809 1868 5.870978 TCGTTGCCTTGTTTAGTATACTTCC 59.129 40.000 11.40 0.16 0.00 3.46
1811 1870 6.035758 CGTTGCCTTGTTTAGTATACTTCCTC 59.964 42.308 11.40 0.96 0.00 3.71
1815 1874 7.104290 GCCTTGTTTAGTATACTTCCTCTGTT 58.896 38.462 11.40 0.00 0.00 3.16
1817 1876 8.311836 CCTTGTTTAGTATACTTCCTCTGTTCA 58.688 37.037 11.40 0.00 0.00 3.18
1818 1877 9.877178 CTTGTTTAGTATACTTCCTCTGTTCAT 57.123 33.333 11.40 0.00 0.00 2.57
1830 1889 9.751542 ACTTCCTCTGTTCATTAATATAAGACG 57.248 33.333 0.00 0.00 0.00 4.18
1831 1890 9.751542 CTTCCTCTGTTCATTAATATAAGACGT 57.248 33.333 0.00 0.00 0.00 4.34
1849 1908 7.639162 AAGACGTTTTAGAGACTTGTATGTG 57.361 36.000 0.00 0.00 0.00 3.21
1850 1909 6.157211 AGACGTTTTAGAGACTTGTATGTGG 58.843 40.000 0.00 0.00 0.00 4.17
1851 1910 5.850614 ACGTTTTAGAGACTTGTATGTGGT 58.149 37.500 0.00 0.00 0.00 4.16
1852 1911 5.924825 ACGTTTTAGAGACTTGTATGTGGTC 59.075 40.000 0.00 0.00 0.00 4.02
1853 1912 5.924254 CGTTTTAGAGACTTGTATGTGGTCA 59.076 40.000 0.00 0.00 32.98 4.02
1854 1913 6.089551 CGTTTTAGAGACTTGTATGTGGTCAG 59.910 42.308 0.00 0.00 32.98 3.51
1855 1914 6.665992 TTTAGAGACTTGTATGTGGTCAGT 57.334 37.500 0.00 0.00 32.98 3.41
1856 1915 4.792521 AGAGACTTGTATGTGGTCAGTC 57.207 45.455 0.00 0.00 32.98 3.51
1857 1916 4.411927 AGAGACTTGTATGTGGTCAGTCT 58.588 43.478 0.00 0.00 37.79 3.24
1858 1917 5.571285 AGAGACTTGTATGTGGTCAGTCTA 58.429 41.667 0.19 0.00 35.61 2.59
1859 1918 6.010850 AGAGACTTGTATGTGGTCAGTCTAA 58.989 40.000 0.19 0.00 35.61 2.10
1860 1919 6.493802 AGAGACTTGTATGTGGTCAGTCTAAA 59.506 38.462 0.19 0.00 35.61 1.85
1861 1920 7.015292 AGAGACTTGTATGTGGTCAGTCTAAAA 59.985 37.037 0.19 0.00 35.61 1.52
1862 1921 6.929606 AGACTTGTATGTGGTCAGTCTAAAAC 59.070 38.462 0.00 0.00 33.98 2.43
1863 1922 5.694910 ACTTGTATGTGGTCAGTCTAAAACG 59.305 40.000 0.00 0.00 0.00 3.60
1864 1923 5.204409 TGTATGTGGTCAGTCTAAAACGT 57.796 39.130 0.00 0.00 0.00 3.99
1865 1924 5.224888 TGTATGTGGTCAGTCTAAAACGTC 58.775 41.667 0.00 0.00 0.00 4.34
1866 1925 3.102052 TGTGGTCAGTCTAAAACGTCC 57.898 47.619 0.00 0.00 0.00 4.79
1867 1926 2.696707 TGTGGTCAGTCTAAAACGTCCT 59.303 45.455 0.00 0.00 0.00 3.85
1868 1927 3.057734 GTGGTCAGTCTAAAACGTCCTG 58.942 50.000 0.00 0.00 0.00 3.86
1869 1928 2.696707 TGGTCAGTCTAAAACGTCCTGT 59.303 45.455 0.00 0.00 0.00 4.00
1870 1929 3.890756 TGGTCAGTCTAAAACGTCCTGTA 59.109 43.478 0.00 0.00 0.00 2.74
1871 1930 4.525487 TGGTCAGTCTAAAACGTCCTGTAT 59.475 41.667 0.00 0.00 0.00 2.29
1872 1931 5.011329 TGGTCAGTCTAAAACGTCCTGTATT 59.989 40.000 0.00 0.00 0.00 1.89
1873 1932 5.347907 GGTCAGTCTAAAACGTCCTGTATTG 59.652 44.000 0.00 0.00 0.00 1.90
1874 1933 5.347907 GTCAGTCTAAAACGTCCTGTATTGG 59.652 44.000 0.00 0.00 0.00 3.16
1875 1934 5.011329 TCAGTCTAAAACGTCCTGTATTGGT 59.989 40.000 0.00 0.00 0.00 3.67
1876 1935 5.120208 CAGTCTAAAACGTCCTGTATTGGTG 59.880 44.000 0.00 0.00 0.00 4.17
1877 1936 5.011329 AGTCTAAAACGTCCTGTATTGGTGA 59.989 40.000 0.00 0.00 0.00 4.02
1878 1937 5.697633 GTCTAAAACGTCCTGTATTGGTGAA 59.302 40.000 0.00 0.00 0.00 3.18
1879 1938 4.823790 AAAACGTCCTGTATTGGTGAAC 57.176 40.909 0.00 0.00 0.00 3.18
1880 1939 3.478857 AACGTCCTGTATTGGTGAACA 57.521 42.857 0.00 0.00 0.00 3.18
1881 1940 3.040147 ACGTCCTGTATTGGTGAACAG 57.960 47.619 0.00 0.00 42.25 3.16
1882 1941 2.631062 ACGTCCTGTATTGGTGAACAGA 59.369 45.455 4.11 0.00 44.79 3.41
1883 1942 3.254060 CGTCCTGTATTGGTGAACAGAG 58.746 50.000 4.11 0.00 44.79 3.35
1884 1943 3.600388 GTCCTGTATTGGTGAACAGAGG 58.400 50.000 4.11 0.00 44.79 3.69
1885 1944 2.571653 TCCTGTATTGGTGAACAGAGGG 59.428 50.000 4.11 0.00 44.79 4.30
1886 1945 2.571653 CCTGTATTGGTGAACAGAGGGA 59.428 50.000 4.11 0.00 44.79 4.20
1887 1946 3.369892 CCTGTATTGGTGAACAGAGGGAG 60.370 52.174 4.11 0.00 44.79 4.30
1888 1947 3.248024 TGTATTGGTGAACAGAGGGAGT 58.752 45.455 0.00 0.00 0.00 3.85
1889 1948 4.422057 TGTATTGGTGAACAGAGGGAGTA 58.578 43.478 0.00 0.00 0.00 2.59
1890 1949 5.030147 TGTATTGGTGAACAGAGGGAGTAT 58.970 41.667 0.00 0.00 0.00 2.12
1891 1950 6.199376 TGTATTGGTGAACAGAGGGAGTATA 58.801 40.000 0.00 0.00 0.00 1.47
1892 1951 6.844388 TGTATTGGTGAACAGAGGGAGTATAT 59.156 38.462 0.00 0.00 0.00 0.86
1893 1952 8.008332 TGTATTGGTGAACAGAGGGAGTATATA 58.992 37.037 0.00 0.00 0.00 0.86
1895 1954 7.931015 TTGGTGAACAGAGGGAGTATATAAT 57.069 36.000 0.00 0.00 0.00 1.28
1898 1957 9.090103 TGGTGAACAGAGGGAGTATATAATAAG 57.910 37.037 0.00 0.00 0.00 1.73
1902 1961 9.863845 GAACAGAGGGAGTATATAATAAGAAGC 57.136 37.037 0.00 0.00 0.00 3.86
1905 1964 9.249053 CAGAGGGAGTATATAATAAGAAGCTCA 57.751 37.037 0.00 0.00 0.00 4.26
1906 1965 9.474313 AGAGGGAGTATATAATAAGAAGCTCAG 57.526 37.037 0.00 0.00 0.00 3.35
1917 1976 3.383620 AGAAGCTCAGACTGTCAGTTG 57.616 47.619 7.00 7.73 0.00 3.16
1919 1978 2.522836 AGCTCAGACTGTCAGTTGTG 57.477 50.000 7.00 8.30 0.00 3.33
1920 1979 0.864455 GCTCAGACTGTCAGTTGTGC 59.136 55.000 7.00 14.35 0.00 4.57
1923 1982 3.201290 CTCAGACTGTCAGTTGTGCTTT 58.799 45.455 7.00 0.00 0.00 3.51
1926 1985 4.811024 TCAGACTGTCAGTTGTGCTTTTAG 59.189 41.667 7.00 0.00 0.00 1.85
1927 1986 4.572389 CAGACTGTCAGTTGTGCTTTTAGT 59.428 41.667 7.00 0.00 0.00 2.24
1928 1987 4.572389 AGACTGTCAGTTGTGCTTTTAGTG 59.428 41.667 7.00 0.00 0.00 2.74
2019 2081 8.856153 TGTGCCTACTAAAAGAATGTGAATTA 57.144 30.769 0.00 0.00 0.00 1.40
2037 2099 7.017055 GTGAATTACATTTTGCCTGATTTTGC 58.983 34.615 0.00 0.00 0.00 3.68
2040 2102 7.832503 ATTACATTTTGCCTGATTTTGCTAC 57.167 32.000 0.00 0.00 0.00 3.58
2041 2103 5.212532 ACATTTTGCCTGATTTTGCTACA 57.787 34.783 0.00 0.00 0.00 2.74
2042 2104 4.990426 ACATTTTGCCTGATTTTGCTACAC 59.010 37.500 0.00 0.00 0.00 2.90
2085 2147 0.599558 CATGGCCCTTCACACTGTTG 59.400 55.000 0.00 0.00 0.00 3.33
2109 2171 3.923017 CCATTTCGGCAACTCTTTCTT 57.077 42.857 0.00 0.00 0.00 2.52
2111 2173 4.974591 CCATTTCGGCAACTCTTTCTTAG 58.025 43.478 0.00 0.00 0.00 2.18
2112 2174 4.455877 CCATTTCGGCAACTCTTTCTTAGT 59.544 41.667 0.00 0.00 0.00 2.24
2113 2175 5.385617 CATTTCGGCAACTCTTTCTTAGTG 58.614 41.667 0.00 0.00 0.00 2.74
2114 2176 3.746045 TCGGCAACTCTTTCTTAGTGT 57.254 42.857 0.00 0.00 32.13 3.55
2115 2177 4.859304 TCGGCAACTCTTTCTTAGTGTA 57.141 40.909 0.00 0.00 30.68 2.90
2116 2178 4.806330 TCGGCAACTCTTTCTTAGTGTAG 58.194 43.478 0.00 0.00 30.68 2.74
2117 2179 4.280174 TCGGCAACTCTTTCTTAGTGTAGT 59.720 41.667 0.00 0.00 30.68 2.73
2118 2180 4.386049 CGGCAACTCTTTCTTAGTGTAGTG 59.614 45.833 0.00 0.00 30.68 2.74
2119 2181 5.298347 GGCAACTCTTTCTTAGTGTAGTGT 58.702 41.667 0.00 0.00 30.68 3.55
2121 2183 6.365518 GGCAACTCTTTCTTAGTGTAGTGTAC 59.634 42.308 0.00 0.00 30.68 2.90
2122 2184 6.921857 GCAACTCTTTCTTAGTGTAGTGTACA 59.078 38.462 0.00 0.00 36.08 2.90
2179 2241 6.902224 AAACGAAAATTGGACAAAAGAAGG 57.098 33.333 0.00 0.00 0.00 3.46
2180 2242 4.368315 ACGAAAATTGGACAAAAGAAGGC 58.632 39.130 0.00 0.00 0.00 4.35
2188 2250 3.569701 TGGACAAAAGAAGGCTGCTTTAG 59.430 43.478 20.69 0.00 34.68 1.85
2207 2291 6.072893 GCTTTAGGAAGTTTCACCGTGAAATA 60.073 38.462 25.50 13.22 46.55 1.40
2208 2292 6.790285 TTAGGAAGTTTCACCGTGAAATAC 57.210 37.500 25.50 16.47 46.55 1.89
2214 2298 4.328983 AGTTTCACCGTGAAATACTATGCG 59.671 41.667 25.50 0.00 46.55 4.73
2219 2303 2.794910 CCGTGAAATACTATGCGGTCAG 59.205 50.000 0.00 0.00 35.11 3.51
2231 2315 1.809684 GCGGTCAGCTTAACTCCTTT 58.190 50.000 0.00 0.00 44.04 3.11
2239 2323 6.351456 GGTCAGCTTAACTCCTTTCTGTAGAT 60.351 42.308 0.00 0.00 0.00 1.98
2240 2324 6.533367 GTCAGCTTAACTCCTTTCTGTAGATG 59.467 42.308 0.00 0.00 0.00 2.90
2243 2327 5.104900 GCTTAACTCCTTTCTGTAGATGGGA 60.105 44.000 0.00 0.00 0.00 4.37
2253 2337 5.018539 TCTGTAGATGGGAATGGTTTACG 57.981 43.478 0.00 0.00 0.00 3.18
2254 2338 4.468510 TCTGTAGATGGGAATGGTTTACGT 59.531 41.667 0.00 0.00 0.00 3.57
2255 2339 5.657745 TCTGTAGATGGGAATGGTTTACGTA 59.342 40.000 0.00 0.00 0.00 3.57
2256 2340 5.663456 TGTAGATGGGAATGGTTTACGTAC 58.337 41.667 0.00 0.00 0.00 3.67
2257 2341 4.146745 AGATGGGAATGGTTTACGTACC 57.853 45.455 0.00 0.00 38.73 3.34
2258 2342 3.778629 AGATGGGAATGGTTTACGTACCT 59.221 43.478 8.89 0.00 39.04 3.08
2270 2354 5.876460 GGTTTACGTACCTTGTACCATGAAT 59.124 40.000 0.00 0.00 35.23 2.57
2309 2399 2.621070 TCTCCTTTGCCACTCCTTACT 58.379 47.619 0.00 0.00 0.00 2.24
2339 2429 3.149196 TCAAATCTTGGTGTGAAGGCTC 58.851 45.455 0.00 0.00 0.00 4.70
2359 2449 5.472137 GGCTCCTCAAAGTTACATTGTAACA 59.528 40.000 31.09 16.11 0.00 2.41
2382 2472 4.589908 AGGTTTTGTTGACTTGACAGACT 58.410 39.130 0.00 0.00 0.00 3.24
2433 2523 4.150451 GGTGAATTGCCATCTTTTGTTTCG 59.850 41.667 0.00 0.00 0.00 3.46
2445 2535 7.115378 CCATCTTTTGTTTCGAAAATCCTTGAG 59.885 37.037 13.10 5.06 0.00 3.02
2457 2547 6.086765 CGAAAATCCTTGAGAAAATTGTGACG 59.913 38.462 0.00 0.00 0.00 4.35
2466 2556 0.958822 AAATTGTGACGTTCCCTGGC 59.041 50.000 0.00 0.00 0.00 4.85
2505 2595 3.005684 GCAAACTGGTGGATCAATTGACA 59.994 43.478 11.07 2.12 0.00 3.58
2549 2639 5.418676 CACTGTTTTGGTTTCCATTGAACT 58.581 37.500 0.00 0.00 31.53 3.01
2602 2693 3.008813 TGGTTTGGTACGGCCTAATTACA 59.991 43.478 0.00 0.00 38.35 2.41
2671 2762 5.714806 ACAACCAATGGTAGAATTAACCTGG 59.285 40.000 4.88 12.72 37.99 4.45
2677 2768 5.313280 TGGTAGAATTAACCTGGTTGTGT 57.687 39.130 22.04 6.39 37.91 3.72
2758 2849 7.008086 CACTCAGCATTCGAAGAAATGATTTTC 59.992 37.037 3.35 0.00 45.90 2.29
2767 2858 7.584987 TCGAAGAAATGATTTTCAGTCTTTCC 58.415 34.615 0.00 0.00 43.09 3.13
2797 2888 3.624777 ACCTTGCATTATGGAGTTCAGG 58.375 45.455 1.44 1.44 0.00 3.86
2806 2897 0.623723 TGGAGTTCAGGCAATACCCC 59.376 55.000 0.00 0.00 40.58 4.95
2863 2954 5.363868 TGGAACTGATGAAGGTAGTATCCAG 59.636 44.000 0.00 0.00 32.76 3.86
3068 3159 8.810990 AGTTAGCTAGTAATCTCTGTAAGTGT 57.189 34.615 0.00 0.00 33.76 3.55
3105 3196 4.106197 GTCGTACTCCAGCTCTAAACATG 58.894 47.826 0.00 0.00 0.00 3.21
3106 3197 4.014406 TCGTACTCCAGCTCTAAACATGA 58.986 43.478 0.00 0.00 0.00 3.07
3131 3222 8.402798 ACATTTCACATACAGTAATTCAACCA 57.597 30.769 0.00 0.00 0.00 3.67
3237 3425 6.765915 ATAAGTCTTTGCCAATTCTTCTCC 57.234 37.500 0.00 0.00 0.00 3.71
3336 3531 6.032460 GTCAAGTCATTAAAAGAAATTCGCGG 59.968 38.462 6.13 0.00 0.00 6.46
3376 3571 2.807967 CGAAAGGTCTGCTGTCAATTGA 59.192 45.455 3.38 3.38 0.00 2.57
3440 3636 7.116736 GGTTTACTCATCCCCTTTCTGAATTA 58.883 38.462 0.00 0.00 0.00 1.40
3483 3679 4.037690 GTCTTTGCGAATGTGAATATGGC 58.962 43.478 0.00 0.00 0.00 4.40
3573 3769 1.268032 GCTACACCATTGGCGAATTCG 60.268 52.381 23.34 23.34 43.27 3.34
3584 3780 2.417239 TGGCGAATTCGTTATCACCAAC 59.583 45.455 27.24 7.84 42.22 3.77
3590 3786 3.755112 TTCGTTATCACCAACCACAGA 57.245 42.857 0.00 0.00 0.00 3.41
3606 3802 1.269958 CAGACTGGTGATCTGGTGGA 58.730 55.000 0.00 0.00 40.01 4.02
3689 3890 4.718961 ACCAATAGATAGCACCATTCCAC 58.281 43.478 0.00 0.00 0.00 4.02
3742 3966 2.498078 GAGACTGAAATTCTCCCGGAGT 59.502 50.000 14.36 0.00 34.50 3.85
3761 3985 5.626809 CGGAGTCCTGATTTATCCAGTTGAA 60.627 44.000 7.77 0.00 0.00 2.69
3851 4075 8.407832 TGTGGAATTCAATGATATCATGTCAAC 58.592 33.333 18.85 13.88 36.56 3.18
3870 4094 8.385898 TGTCAACGTTATTCTGGAACTAAATT 57.614 30.769 0.00 0.00 0.00 1.82
3880 4104 7.569599 TTCTGGAACTAAATTCTACTCCCTT 57.430 36.000 0.00 0.00 37.48 3.95
3881 4105 7.184067 TCTGGAACTAAATTCTACTCCCTTC 57.816 40.000 0.00 0.00 37.48 3.46
3897 4121 3.945285 TCCCTTCGTTCCATAATTCTTGC 59.055 43.478 0.00 0.00 0.00 4.01
3899 4123 3.947834 CCTTCGTTCCATAATTCTTGCCT 59.052 43.478 0.00 0.00 0.00 4.75
3908 4132 7.732222 TCCATAATTCTTGCCTTGGTTTTAT 57.268 32.000 0.00 0.00 0.00 1.40
3915 4139 8.744568 ATTCTTGCCTTGGTTTTATTTCAAAA 57.255 26.923 0.00 0.00 0.00 2.44
3919 4143 9.235537 CTTGCCTTGGTTTTATTTCAAAATTTG 57.764 29.630 0.00 0.00 0.00 2.32
3956 4180 6.091076 ACAAGAATTATGGAATGGAGGGAA 57.909 37.500 0.00 0.00 0.00 3.97
4026 4250 5.246307 ACTTTAGTGCTTTGGTGTATCTCC 58.754 41.667 0.00 0.00 0.00 3.71
4027 4251 4.901197 TTAGTGCTTTGGTGTATCTCCA 57.099 40.909 0.00 0.00 0.00 3.86
4161 4388 7.501559 ACCTTGATCTGAGTGATTCCAAATATG 59.498 37.037 0.00 0.00 35.14 1.78
4208 4441 6.294473 AGCTGGGTAATCATGTGATCTTAAG 58.706 40.000 0.00 0.00 32.75 1.85
4373 4624 6.558771 TTTGATGTACACTTCATTCACAGG 57.441 37.500 0.00 0.00 31.40 4.00
4430 4681 1.079819 TACGCTGCAGCTGGTTCTC 60.080 57.895 34.22 5.37 39.32 2.87
4451 4704 2.291153 CCATCCAGTGGTTCATGGTCTT 60.291 50.000 16.86 0.00 43.44 3.01
4496 4749 7.645058 TCTCTGATGGATGCGTATATTGATA 57.355 36.000 0.00 0.00 0.00 2.15
4570 4824 2.179018 CTTTTCACCATGGCGGCG 59.821 61.111 13.04 0.51 39.03 6.46
4604 4862 2.896685 TGGGGTTTCATGTTTCATCCAC 59.103 45.455 0.00 0.00 0.00 4.02
4617 4875 3.969287 TCATCCACTCAAAGACTCCAG 57.031 47.619 0.00 0.00 0.00 3.86
4622 4880 2.634940 CCACTCAAAGACTCCAGAGGAA 59.365 50.000 0.00 0.00 32.52 3.36
4656 4914 5.221126 GGGAGAAGGCAAATCATGACATAAC 60.221 44.000 0.00 0.00 40.75 1.89
4680 4939 1.112113 GGTAGCAGGAGTTCGATCCA 58.888 55.000 7.77 0.00 42.26 3.41
4732 4991 7.500559 GCTAATCTCCAGGTATCAACAAATCTT 59.499 37.037 0.00 0.00 0.00 2.40
4734 4993 5.745227 TCTCCAGGTATCAACAAATCTTCC 58.255 41.667 0.00 0.00 0.00 3.46
4786 5045 5.699001 TGTTAAATGATTGCGTCTGTACTGT 59.301 36.000 0.00 0.00 0.00 3.55
4787 5046 6.869388 TGTTAAATGATTGCGTCTGTACTGTA 59.131 34.615 0.00 0.00 0.00 2.74
4788 5047 7.385478 TGTTAAATGATTGCGTCTGTACTGTAA 59.615 33.333 0.00 0.00 0.00 2.41
4789 5048 6.408858 AAATGATTGCGTCTGTACTGTAAG 57.591 37.500 0.00 0.00 42.29 2.34
4797 5056 5.646793 TGCGTCTGTACTGTAAGAAGTATCT 59.353 40.000 0.00 0.00 35.20 1.98
4798 5057 5.966503 GCGTCTGTACTGTAAGAAGTATCTG 59.033 44.000 0.00 0.00 35.20 2.90
4817 5076 1.590932 GCATCCAGCATCGAGAACAT 58.409 50.000 0.00 0.00 44.79 2.71
4821 5080 1.550072 TCCAGCATCGAGAACATGTGA 59.450 47.619 0.00 0.00 0.00 3.58
4834 5093 1.750778 ACATGTGATCATTTTCGGGGC 59.249 47.619 0.00 0.00 31.15 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.682710 AGCAGAGAACAGTTAAAAACAATGTAA 58.317 29.630 0.00 0.00 0.00 2.41
28 30 0.534877 ATTGCAACGGTGACAGCAGA 60.535 50.000 3.55 0.00 38.35 4.26
29 31 0.386352 CATTGCAACGGTGACAGCAG 60.386 55.000 3.55 0.48 38.35 4.24
34 36 0.593773 AAACGCATTGCAACGGTGAC 60.594 50.000 17.49 0.00 0.00 3.67
39 41 0.777631 CAAGGAAACGCATTGCAACG 59.222 50.000 0.00 4.29 30.93 4.10
50 52 1.202348 GTATGCCAGCACCAAGGAAAC 59.798 52.381 0.00 0.00 0.00 2.78
53 56 0.322456 GTGTATGCCAGCACCAAGGA 60.322 55.000 0.00 0.00 0.00 3.36
64 67 2.380084 TCCGAACAGAAGTGTATGCC 57.620 50.000 0.00 0.00 35.08 4.40
71 74 5.855045 ACTACAAGATTTCCGAACAGAAGT 58.145 37.500 0.00 0.00 0.00 3.01
75 78 6.856426 GGAAAAACTACAAGATTTCCGAACAG 59.144 38.462 10.78 0.00 40.82 3.16
76 79 6.731164 GGAAAAACTACAAGATTTCCGAACA 58.269 36.000 10.78 0.00 40.82 3.18
86 90 6.940298 CAGGTATCAAGGGAAAAACTACAAGA 59.060 38.462 0.00 0.00 0.00 3.02
91 95 5.013704 TCTGCAGGTATCAAGGGAAAAACTA 59.986 40.000 15.13 0.00 0.00 2.24
92 96 4.082125 CTGCAGGTATCAAGGGAAAAACT 58.918 43.478 5.57 0.00 0.00 2.66
93 97 4.079253 TCTGCAGGTATCAAGGGAAAAAC 58.921 43.478 15.13 0.00 0.00 2.43
94 98 4.380843 TCTGCAGGTATCAAGGGAAAAA 57.619 40.909 15.13 0.00 0.00 1.94
99 103 3.012518 CAGTTTCTGCAGGTATCAAGGG 58.987 50.000 15.13 0.00 0.00 3.95
179 188 3.644884 ACCACAGAACTACGACTGAAG 57.355 47.619 0.00 0.00 37.54 3.02
182 191 2.794910 CACAACCACAGAACTACGACTG 59.205 50.000 0.00 0.00 39.65 3.51
183 192 2.429610 ACACAACCACAGAACTACGACT 59.570 45.455 0.00 0.00 0.00 4.18
188 197 4.223556 TCCAAACACAACCACAGAACTA 57.776 40.909 0.00 0.00 0.00 2.24
194 203 2.167281 CCACATTCCAAACACAACCACA 59.833 45.455 0.00 0.00 0.00 4.17
259 268 2.851195 ACCTCAGAAGTTCGCAAATGT 58.149 42.857 0.00 0.00 0.00 2.71
295 304 3.626930 TGCTCAGGGTGTTACAAAAACT 58.373 40.909 0.00 0.00 0.00 2.66
300 309 2.356382 CGTTTTGCTCAGGGTGTTACAA 59.644 45.455 0.00 0.00 0.00 2.41
312 321 2.003301 GGATCTCAGTCCGTTTTGCTC 58.997 52.381 0.00 0.00 0.00 4.26
313 322 2.100605 GGATCTCAGTCCGTTTTGCT 57.899 50.000 0.00 0.00 0.00 3.91
333 342 4.072131 TGACTTCACTTGATAAAGGCACC 58.928 43.478 0.00 0.00 33.16 5.01
883 895 3.053896 GCGCTACGGCCCAGTTTT 61.054 61.111 0.00 0.00 34.44 2.43
910 922 1.119684 AGTGGCGGCTTTTCCTTTTT 58.880 45.000 11.43 0.00 0.00 1.94
1359 1400 4.292178 GGGATGCCGAGCTCCGAG 62.292 72.222 8.47 0.00 41.76 4.63
1387 1428 0.244994 CTGACGAACTCCTGGACCAG 59.755 60.000 15.15 15.15 0.00 4.00
1462 1503 3.302129 CCAGGGGGCAATTGAAGC 58.698 61.111 10.34 0.00 0.00 3.86
1472 1513 2.300967 TAGCAAGTGAGCCAGGGGG 61.301 63.158 0.00 0.00 34.23 5.40
1474 1515 1.448540 CGTAGCAAGTGAGCCAGGG 60.449 63.158 0.00 0.00 34.23 4.45
1475 1516 0.530744 TACGTAGCAAGTGAGCCAGG 59.469 55.000 0.00 0.00 34.23 4.45
1478 1519 2.422832 AGTACTACGTAGCAAGTGAGCC 59.577 50.000 22.40 0.00 34.23 4.70
1482 1523 3.015327 AGGGAGTACTACGTAGCAAGTG 58.985 50.000 22.40 0.00 0.00 3.16
1483 1524 3.277715 GAGGGAGTACTACGTAGCAAGT 58.722 50.000 22.40 13.36 0.00 3.16
1486 1527 1.473965 CGGAGGGAGTACTACGTAGCA 60.474 57.143 22.40 7.00 39.92 3.49
1487 1528 1.224965 CGGAGGGAGTACTACGTAGC 58.775 60.000 22.40 7.29 39.92 3.58
1502 1543 3.197766 TGCTCTTATATTATGGGCCGGAG 59.802 47.826 5.05 0.00 0.00 4.63
1503 1544 3.178046 TGCTCTTATATTATGGGCCGGA 58.822 45.455 5.05 0.00 0.00 5.14
1504 1545 3.627395 TGCTCTTATATTATGGGCCGG 57.373 47.619 0.00 0.00 0.00 6.13
1505 1546 6.515272 AAAATGCTCTTATATTATGGGCCG 57.485 37.500 0.00 0.00 0.00 6.13
1506 1547 7.814587 GTCAAAAATGCTCTTATATTATGGGCC 59.185 37.037 0.00 0.00 0.00 5.80
1507 1548 8.359642 TGTCAAAAATGCTCTTATATTATGGGC 58.640 33.333 0.00 0.00 0.00 5.36
1508 1549 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
1514 1555 9.672673 ACACTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 22.95 0.00 40.24 0.86
1516 1557 7.986085 ACACTAGTGTCAAAAATGCTCTTAT 57.014 32.000 22.95 0.00 40.24 1.73
1532 1573 4.795970 AAAAGCGTCTTTGACACTAGTG 57.204 40.909 21.44 21.44 32.09 2.74
1533 1574 8.773404 AATATAAAAGCGTCTTTGACACTAGT 57.227 30.769 5.75 0.00 32.09 2.57
1536 1577 8.612619 CCATAATATAAAAGCGTCTTTGACACT 58.387 33.333 5.75 0.00 32.09 3.55
1537 1578 7.855904 CCCATAATATAAAAGCGTCTTTGACAC 59.144 37.037 5.75 0.00 32.09 3.67
1538 1579 7.771361 TCCCATAATATAAAAGCGTCTTTGACA 59.229 33.333 5.75 0.00 32.09 3.58
1539 1580 8.068380 GTCCCATAATATAAAAGCGTCTTTGAC 58.932 37.037 5.75 0.00 0.00 3.18
1540 1581 7.042321 CGTCCCATAATATAAAAGCGTCTTTGA 60.042 37.037 5.75 0.00 0.00 2.69
1541 1582 7.069569 CGTCCCATAATATAAAAGCGTCTTTG 58.930 38.462 5.75 0.00 0.00 2.77
1542 1583 6.204108 CCGTCCCATAATATAAAAGCGTCTTT 59.796 38.462 0.00 0.00 0.00 2.52
1543 1584 5.699458 CCGTCCCATAATATAAAAGCGTCTT 59.301 40.000 0.00 0.00 0.00 3.01
1544 1585 5.011329 TCCGTCCCATAATATAAAAGCGTCT 59.989 40.000 0.00 0.00 0.00 4.18
1545 1586 5.232463 TCCGTCCCATAATATAAAAGCGTC 58.768 41.667 0.00 0.00 0.00 5.19
1546 1587 5.217978 TCCGTCCCATAATATAAAAGCGT 57.782 39.130 0.00 0.00 0.00 5.07
1547 1588 4.630069 CCTCCGTCCCATAATATAAAAGCG 59.370 45.833 0.00 0.00 0.00 4.68
1548 1589 4.941873 CCCTCCGTCCCATAATATAAAAGC 59.058 45.833 0.00 0.00 0.00 3.51
1549 1590 6.013639 AGTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
1550 1591 5.847817 AGTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
1551 1592 5.408824 AGTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
1552 1593 5.019657 AGTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1553 1594 4.687262 AGTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1554 1595 3.562108 AGTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1555 1596 3.400322 ACTAGTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1556 1597 2.179424 ACTAGTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1557 1598 1.572415 ACTAGTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1558 1599 1.229131 ACTAGTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1559 1600 1.145325 CTACTAGTCCCTCCGTCCCAT 59.855 57.143 0.00 0.00 0.00 4.00
1560 1601 0.549950 CTACTAGTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
1561 1602 0.842635 TCTACTAGTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
1562 1603 2.955342 ATCTACTAGTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
1563 1604 3.318557 CCAAATCTACTAGTCCCTCCGTC 59.681 52.174 0.00 0.00 0.00 4.79
1564 1605 3.297736 CCAAATCTACTAGTCCCTCCGT 58.702 50.000 0.00 0.00 0.00 4.69
1565 1606 2.628657 CCCAAATCTACTAGTCCCTCCG 59.371 54.545 0.00 0.00 0.00 4.63
1566 1607 3.655384 ACCCAAATCTACTAGTCCCTCC 58.345 50.000 0.00 0.00 0.00 4.30
1567 1608 4.715297 TCAACCCAAATCTACTAGTCCCTC 59.285 45.833 0.00 0.00 0.00 4.30
1568 1609 4.695606 TCAACCCAAATCTACTAGTCCCT 58.304 43.478 0.00 0.00 0.00 4.20
1569 1610 4.683671 GCTCAACCCAAATCTACTAGTCCC 60.684 50.000 0.00 0.00 0.00 4.46
1570 1611 4.081087 TGCTCAACCCAAATCTACTAGTCC 60.081 45.833 0.00 0.00 0.00 3.85
1571 1612 5.086104 TGCTCAACCCAAATCTACTAGTC 57.914 43.478 0.00 0.00 0.00 2.59
1572 1613 5.246307 GTTGCTCAACCCAAATCTACTAGT 58.754 41.667 0.00 0.00 35.36 2.57
1576 1617 2.812011 ACGTTGCTCAACCCAAATCTAC 59.188 45.455 7.12 0.00 38.03 2.59
1579 1620 1.336755 ACACGTTGCTCAACCCAAATC 59.663 47.619 7.12 0.00 38.03 2.17
1594 1635 1.528309 CCTGCAAAAGGGGACACGT 60.528 57.895 0.00 0.00 43.15 4.49
1606 1656 1.521450 GCTGCAAGAAGCTCCTGCAA 61.521 55.000 15.61 3.81 45.94 4.08
1632 1682 1.648116 ACCTTTTCCACGGCCTACTA 58.352 50.000 0.00 0.00 0.00 1.82
1674 1724 7.974501 ACTTCATACAGAAACTCGTAACCATAG 59.025 37.037 0.00 0.00 35.40 2.23
1677 1727 6.092955 ACTTCATACAGAAACTCGTAACCA 57.907 37.500 0.00 0.00 35.40 3.67
1683 1733 6.800408 TCGAACTTACTTCATACAGAAACTCG 59.200 38.462 0.00 0.00 35.40 4.18
1734 1784 3.260380 CAGAGTCACAGAGGGAAGAACAT 59.740 47.826 0.00 0.00 0.00 2.71
1758 1808 4.286032 TGACTAACTAACTGCAACAGGGAT 59.714 41.667 0.00 0.00 35.51 3.85
1764 1815 4.617645 CGAGTCTGACTAACTAACTGCAAC 59.382 45.833 10.86 0.00 0.00 4.17
1770 1821 3.919197 GGCAACGAGTCTGACTAACTAAC 59.081 47.826 10.86 0.00 0.00 2.34
1780 1831 3.131396 ACTAAACAAGGCAACGAGTCTG 58.869 45.455 0.00 0.00 46.39 3.51
1781 1832 3.470645 ACTAAACAAGGCAACGAGTCT 57.529 42.857 0.00 0.00 46.39 3.24
1784 1835 6.035758 GGAAGTATACTAAACAAGGCAACGAG 59.964 42.308 5.65 0.00 46.39 4.18
1786 1837 5.873164 AGGAAGTATACTAAACAAGGCAACG 59.127 40.000 5.65 0.00 46.39 4.10
1790 1849 6.641474 ACAGAGGAAGTATACTAAACAAGGC 58.359 40.000 5.65 0.00 0.00 4.35
1805 1864 9.751542 ACGTCTTATATTAATGAACAGAGGAAG 57.248 33.333 0.00 0.00 0.00 3.46
1825 1884 6.645415 CCACATACAAGTCTCTAAAACGTCTT 59.355 38.462 0.00 0.00 0.00 3.01
1826 1885 6.157211 CCACATACAAGTCTCTAAAACGTCT 58.843 40.000 0.00 0.00 0.00 4.18
1828 1887 5.850614 ACCACATACAAGTCTCTAAAACGT 58.149 37.500 0.00 0.00 0.00 3.99
1829 1888 5.924254 TGACCACATACAAGTCTCTAAAACG 59.076 40.000 0.00 0.00 0.00 3.60
1830 1889 6.929606 ACTGACCACATACAAGTCTCTAAAAC 59.070 38.462 0.00 0.00 0.00 2.43
1831 1890 7.015292 AGACTGACCACATACAAGTCTCTAAAA 59.985 37.037 0.00 0.00 30.43 1.52
1832 1891 6.493802 AGACTGACCACATACAAGTCTCTAAA 59.506 38.462 0.00 0.00 30.43 1.85
1833 1892 6.010850 AGACTGACCACATACAAGTCTCTAA 58.989 40.000 0.00 0.00 30.43 2.10
1834 1893 5.571285 AGACTGACCACATACAAGTCTCTA 58.429 41.667 0.00 0.00 30.43 2.43
1835 1894 4.411927 AGACTGACCACATACAAGTCTCT 58.588 43.478 0.00 0.00 30.43 3.10
1836 1895 4.792521 AGACTGACCACATACAAGTCTC 57.207 45.455 0.00 0.00 30.43 3.36
1837 1896 6.665992 TTTAGACTGACCACATACAAGTCT 57.334 37.500 8.53 8.53 38.49 3.24
1838 1897 6.128902 CGTTTTAGACTGACCACATACAAGTC 60.129 42.308 0.00 0.00 0.00 3.01
1839 1898 5.694910 CGTTTTAGACTGACCACATACAAGT 59.305 40.000 0.00 0.00 0.00 3.16
1840 1899 5.694910 ACGTTTTAGACTGACCACATACAAG 59.305 40.000 0.00 0.00 0.00 3.16
1841 1900 5.603596 ACGTTTTAGACTGACCACATACAA 58.396 37.500 0.00 0.00 0.00 2.41
1842 1901 5.204409 ACGTTTTAGACTGACCACATACA 57.796 39.130 0.00 0.00 0.00 2.29
1843 1902 4.624452 GGACGTTTTAGACTGACCACATAC 59.376 45.833 0.00 0.00 0.00 2.39
1844 1903 4.525487 AGGACGTTTTAGACTGACCACATA 59.475 41.667 0.00 0.00 0.00 2.29
1845 1904 3.323979 AGGACGTTTTAGACTGACCACAT 59.676 43.478 0.00 0.00 0.00 3.21
1846 1905 2.696707 AGGACGTTTTAGACTGACCACA 59.303 45.455 0.00 0.00 0.00 4.17
1847 1906 3.057734 CAGGACGTTTTAGACTGACCAC 58.942 50.000 0.00 0.00 0.00 4.16
1848 1907 2.696707 ACAGGACGTTTTAGACTGACCA 59.303 45.455 0.00 0.00 33.57 4.02
1849 1908 3.382048 ACAGGACGTTTTAGACTGACC 57.618 47.619 0.00 0.00 33.57 4.02
1850 1909 5.347907 CCAATACAGGACGTTTTAGACTGAC 59.652 44.000 0.00 0.00 33.57 3.51
1851 1910 5.011329 ACCAATACAGGACGTTTTAGACTGA 59.989 40.000 0.00 0.00 33.57 3.41
1852 1911 5.120208 CACCAATACAGGACGTTTTAGACTG 59.880 44.000 0.00 0.00 35.40 3.51
1853 1912 5.011329 TCACCAATACAGGACGTTTTAGACT 59.989 40.000 0.00 0.00 0.00 3.24
1854 1913 5.232463 TCACCAATACAGGACGTTTTAGAC 58.768 41.667 0.00 0.00 0.00 2.59
1855 1914 5.471556 TCACCAATACAGGACGTTTTAGA 57.528 39.130 0.00 0.00 0.00 2.10
1856 1915 5.467399 TGTTCACCAATACAGGACGTTTTAG 59.533 40.000 0.00 0.00 0.00 1.85
1857 1916 5.366460 TGTTCACCAATACAGGACGTTTTA 58.634 37.500 0.00 0.00 0.00 1.52
1858 1917 4.200874 TGTTCACCAATACAGGACGTTTT 58.799 39.130 0.00 0.00 0.00 2.43
1859 1918 3.811083 TGTTCACCAATACAGGACGTTT 58.189 40.909 0.00 0.00 0.00 3.60
1860 1919 3.070446 TCTGTTCACCAATACAGGACGTT 59.930 43.478 0.00 0.00 41.58 3.99
1861 1920 2.631062 TCTGTTCACCAATACAGGACGT 59.369 45.455 0.00 0.00 41.58 4.34
1862 1921 3.254060 CTCTGTTCACCAATACAGGACG 58.746 50.000 0.00 0.00 41.58 4.79
1863 1922 3.600388 CCTCTGTTCACCAATACAGGAC 58.400 50.000 0.00 0.00 41.58 3.85
1864 1923 2.571653 CCCTCTGTTCACCAATACAGGA 59.428 50.000 0.00 0.00 41.58 3.86
1865 1924 2.571653 TCCCTCTGTTCACCAATACAGG 59.428 50.000 0.00 0.00 41.58 4.00
1866 1925 3.261897 ACTCCCTCTGTTCACCAATACAG 59.738 47.826 0.00 0.00 42.41 2.74
1867 1926 3.248024 ACTCCCTCTGTTCACCAATACA 58.752 45.455 0.00 0.00 0.00 2.29
1868 1927 3.983044 ACTCCCTCTGTTCACCAATAC 57.017 47.619 0.00 0.00 0.00 1.89
1869 1928 9.615660 ATTATATACTCCCTCTGTTCACCAATA 57.384 33.333 0.00 0.00 0.00 1.90
1870 1929 7.931015 TTATATACTCCCTCTGTTCACCAAT 57.069 36.000 0.00 0.00 0.00 3.16
1871 1930 7.931015 ATTATATACTCCCTCTGTTCACCAA 57.069 36.000 0.00 0.00 0.00 3.67
1872 1931 9.090103 CTTATTATATACTCCCTCTGTTCACCA 57.910 37.037 0.00 0.00 0.00 4.17
1873 1932 9.310449 TCTTATTATATACTCCCTCTGTTCACC 57.690 37.037 0.00 0.00 0.00 4.02
1876 1935 9.863845 GCTTCTTATTATATACTCCCTCTGTTC 57.136 37.037 0.00 0.00 0.00 3.18
1877 1936 9.608718 AGCTTCTTATTATATACTCCCTCTGTT 57.391 33.333 0.00 0.00 0.00 3.16
1878 1937 9.250246 GAGCTTCTTATTATATACTCCCTCTGT 57.750 37.037 0.00 0.00 0.00 3.41
1879 1938 9.249053 TGAGCTTCTTATTATATACTCCCTCTG 57.751 37.037 0.00 0.00 0.00 3.35
1880 1939 9.474313 CTGAGCTTCTTATTATATACTCCCTCT 57.526 37.037 0.00 0.00 0.00 3.69
1881 1940 9.469097 TCTGAGCTTCTTATTATATACTCCCTC 57.531 37.037 0.00 0.00 0.00 4.30
1882 1941 9.250246 GTCTGAGCTTCTTATTATATACTCCCT 57.750 37.037 0.00 0.00 0.00 4.20
1883 1942 9.250246 AGTCTGAGCTTCTTATTATATACTCCC 57.750 37.037 0.00 0.00 0.00 4.30
1889 1948 9.142014 ACTGACAGTCTGAGCTTCTTATTATAT 57.858 33.333 14.03 0.00 0.00 0.86
1890 1949 8.526667 ACTGACAGTCTGAGCTTCTTATTATA 57.473 34.615 14.03 0.00 0.00 0.98
1891 1950 7.416964 ACTGACAGTCTGAGCTTCTTATTAT 57.583 36.000 14.03 0.00 0.00 1.28
1892 1951 6.842437 ACTGACAGTCTGAGCTTCTTATTA 57.158 37.500 14.03 0.00 0.00 0.98
1893 1952 5.736951 ACTGACAGTCTGAGCTTCTTATT 57.263 39.130 14.03 0.00 0.00 1.40
1895 1954 4.342378 ACAACTGACAGTCTGAGCTTCTTA 59.658 41.667 8.93 0.00 0.00 2.10
1898 1957 2.799412 CACAACTGACAGTCTGAGCTTC 59.201 50.000 8.93 0.00 0.00 3.86
1902 1961 2.522836 AGCACAACTGACAGTCTGAG 57.477 50.000 8.93 9.16 0.00 3.35
1905 1964 4.572389 CACTAAAAGCACAACTGACAGTCT 59.428 41.667 8.93 0.00 0.00 3.24
1906 1965 4.786609 GCACTAAAAGCACAACTGACAGTC 60.787 45.833 8.93 0.00 0.00 3.51
1917 1976 9.013490 CATGAACTTATATTGCACTAAAAGCAC 57.987 33.333 0.00 0.00 42.54 4.40
1926 1985 9.489084 TGGATAGTACATGAACTTATATTGCAC 57.511 33.333 0.00 0.00 0.00 4.57
1927 1986 9.710900 CTGGATAGTACATGAACTTATATTGCA 57.289 33.333 0.00 0.00 0.00 4.08
1928 1987 9.929180 TCTGGATAGTACATGAACTTATATTGC 57.071 33.333 0.00 0.00 0.00 3.56
1989 2051 9.290988 TCACATTCTTTTAGTAGGCACATTTTA 57.709 29.630 0.00 0.00 0.00 1.52
1990 2052 8.177119 TCACATTCTTTTAGTAGGCACATTTT 57.823 30.769 0.00 0.00 0.00 1.82
1992 2054 7.759489 TTCACATTCTTTTAGTAGGCACATT 57.241 32.000 0.00 0.00 0.00 2.71
1993 2055 7.944729 ATTCACATTCTTTTAGTAGGCACAT 57.055 32.000 0.00 0.00 0.00 3.21
1994 2056 7.759489 AATTCACATTCTTTTAGTAGGCACA 57.241 32.000 0.00 0.00 0.00 4.57
1995 2057 8.726988 TGTAATTCACATTCTTTTAGTAGGCAC 58.273 33.333 0.00 0.00 30.04 5.01
1996 2058 8.856153 TGTAATTCACATTCTTTTAGTAGGCA 57.144 30.769 0.00 0.00 30.04 4.75
2014 2076 7.368480 AGCAAAATCAGGCAAAATGTAATTC 57.632 32.000 0.00 0.00 33.67 2.17
2019 2081 4.990426 GTGTAGCAAAATCAGGCAAAATGT 59.010 37.500 0.00 0.00 0.00 2.71
2040 2102 3.624861 GGTGAGAATTGATGCTACAGGTG 59.375 47.826 0.00 0.00 0.00 4.00
2041 2103 3.521126 AGGTGAGAATTGATGCTACAGGT 59.479 43.478 0.00 0.00 0.00 4.00
2042 2104 3.875727 CAGGTGAGAATTGATGCTACAGG 59.124 47.826 0.00 0.00 0.00 4.00
2054 2116 1.076485 GGCCATGGCAGGTGAGAAT 60.076 57.895 36.56 0.00 44.11 2.40
2056 2118 3.731728 GGGCCATGGCAGGTGAGA 61.732 66.667 36.56 0.00 44.11 3.27
2095 2157 4.386049 CACTACACTAAGAAAGAGTTGCCG 59.614 45.833 0.00 0.00 30.97 5.69
2139 2201 3.369756 TCGTTTTCTTTACGCTAGGCATG 59.630 43.478 0.00 0.00 38.81 4.06
2141 2203 3.029320 TCGTTTTCTTTACGCTAGGCA 57.971 42.857 0.00 0.00 38.81 4.75
2142 2204 4.394099 TTTCGTTTTCTTTACGCTAGGC 57.606 40.909 0.00 0.00 38.81 3.93
2143 2205 6.304683 CCAATTTTCGTTTTCTTTACGCTAGG 59.695 38.462 0.00 0.00 38.81 3.02
2144 2206 7.059147 GTCCAATTTTCGTTTTCTTTACGCTAG 59.941 37.037 0.00 0.00 38.81 3.42
2146 2208 5.684184 GTCCAATTTTCGTTTTCTTTACGCT 59.316 36.000 0.00 0.00 38.81 5.07
2148 2210 7.439204 TTGTCCAATTTTCGTTTTCTTTACG 57.561 32.000 0.00 0.00 40.23 3.18
2149 2211 9.683651 CTTTTGTCCAATTTTCGTTTTCTTTAC 57.316 29.630 0.00 0.00 0.00 2.01
2150 2212 9.640963 TCTTTTGTCCAATTTTCGTTTTCTTTA 57.359 25.926 0.00 0.00 0.00 1.85
2151 2213 8.541133 TCTTTTGTCCAATTTTCGTTTTCTTT 57.459 26.923 0.00 0.00 0.00 2.52
2153 2215 7.277760 CCTTCTTTTGTCCAATTTTCGTTTTCT 59.722 33.333 0.00 0.00 0.00 2.52
2154 2216 7.398746 CCTTCTTTTGTCCAATTTTCGTTTTC 58.601 34.615 0.00 0.00 0.00 2.29
2179 2241 2.095718 CGGTGAAACTTCCTAAAGCAGC 60.096 50.000 0.00 0.00 35.81 5.25
2180 2242 3.058914 CACGGTGAAACTTCCTAAAGCAG 60.059 47.826 0.74 0.00 35.81 4.24
2207 2291 2.159085 GGAGTTAAGCTGACCGCATAGT 60.159 50.000 0.00 0.00 42.61 2.12
2208 2292 2.101582 AGGAGTTAAGCTGACCGCATAG 59.898 50.000 0.00 0.00 42.61 2.23
2214 2298 4.009370 ACAGAAAGGAGTTAAGCTGACC 57.991 45.455 0.00 0.00 0.00 4.02
2219 2303 5.104900 TCCCATCTACAGAAAGGAGTTAAGC 60.105 44.000 3.39 0.00 0.00 3.09
2231 2315 4.468510 ACGTAAACCATTCCCATCTACAGA 59.531 41.667 0.00 0.00 0.00 3.41
2239 2323 3.072768 ACAAGGTACGTAAACCATTCCCA 59.927 43.478 10.09 0.00 42.40 4.37
2240 2324 3.678289 ACAAGGTACGTAAACCATTCCC 58.322 45.455 10.09 0.00 42.40 3.97
2243 2327 5.226194 TGGTACAAGGTACGTAAACCATT 57.774 39.130 10.09 0.00 42.40 3.16
2258 2342 9.747898 AACTATGGAAAGTTATTCATGGTACAA 57.252 29.630 0.00 0.00 39.09 2.41
2309 2399 9.695526 CTTCACACCAAGATTTGATGATTAAAA 57.304 29.630 0.00 0.00 0.00 1.52
2328 2418 2.262423 ACTTTGAGGAGCCTTCACAC 57.738 50.000 0.00 0.00 0.00 3.82
2339 2429 7.272037 ACCTTGTTACAATGTAACTTTGAGG 57.728 36.000 29.26 27.80 0.00 3.86
2359 2449 5.010282 AGTCTGTCAAGTCAACAAAACCTT 58.990 37.500 0.00 0.00 0.00 3.50
2375 2465 5.651530 TCGAATCAACATTCCTAGTCTGTC 58.348 41.667 0.00 0.00 35.81 3.51
2382 2472 4.832248 ACTGCTTCGAATCAACATTCCTA 58.168 39.130 0.00 0.00 35.81 2.94
2433 2523 6.918022 ACGTCACAATTTTCTCAAGGATTTTC 59.082 34.615 0.00 0.00 0.00 2.29
2445 2535 2.607038 GCCAGGGAACGTCACAATTTTC 60.607 50.000 0.00 0.00 0.00 2.29
2457 2547 1.200020 CAATTCTTCACGCCAGGGAAC 59.800 52.381 0.00 0.00 34.30 3.62
2466 2556 4.024048 AGTTTGCCAGTACAATTCTTCACG 60.024 41.667 0.00 0.00 0.00 4.35
2505 2595 3.642848 TGGTAGGAACGTGGAAACTTACT 59.357 43.478 0.00 0.00 0.00 2.24
2549 2639 7.284489 ACAGGAAATTTAAGCTACAGTTGTCAA 59.716 33.333 0.00 0.00 0.00 3.18
2626 2717 4.765339 TGTCAAGAGCTACTACTGTTAGCA 59.235 41.667 12.58 0.00 39.16 3.49
2637 2728 3.412386 ACCATTGGTTGTCAAGAGCTAC 58.588 45.455 1.37 0.00 38.95 3.58
2677 2768 7.334921 CCACAAGGATATTCGTTTACCTGTAAA 59.665 37.037 0.00 0.00 36.89 2.01
2689 2780 4.402056 ACCTACACCACAAGGATATTCG 57.598 45.455 0.00 0.00 38.69 3.34
2758 2849 1.528129 GTCCAGCCAAGGAAAGACTG 58.472 55.000 0.00 0.00 39.92 3.51
2767 2858 1.838112 TAATGCAAGGTCCAGCCAAG 58.162 50.000 0.00 0.00 40.61 3.61
2797 2888 1.066929 CAACTGCCTTTGGGGTATTGC 60.067 52.381 0.00 0.00 37.43 3.56
2806 2897 2.355009 GCACGCCAACTGCCTTTG 60.355 61.111 0.00 0.00 36.24 2.77
2863 2954 2.254546 TCCGTATGCATTGTGGATCC 57.745 50.000 3.54 4.20 29.08 3.36
2983 3074 8.626526 GTTTAAAGGAGGAACAAAATACTGACA 58.373 33.333 0.00 0.00 0.00 3.58
3013 3104 9.793245 GTATTCGTATTACTGTATGTTCAATGC 57.207 33.333 0.00 0.00 0.00 3.56
3068 3159 7.660112 TGGAGTACGACAAGTTAACTATTTGA 58.340 34.615 8.92 0.00 0.00 2.69
3105 3196 8.511321 TGGTTGAATTACTGTATGTGAAATGTC 58.489 33.333 0.00 0.00 0.00 3.06
3106 3197 8.296713 GTGGTTGAATTACTGTATGTGAAATGT 58.703 33.333 0.00 0.00 0.00 2.71
3237 3425 9.800433 TGTTGCATCATTTGGTATTAAATACAG 57.200 29.630 0.00 0.00 37.48 2.74
3287 3482 5.121105 CAGCCACATCATCAATCTACAAGA 58.879 41.667 0.00 0.00 0.00 3.02
3303 3498 3.500448 TTAATGACTTGACCAGCCACA 57.500 42.857 0.00 0.00 0.00 4.17
3336 3531 1.196127 CGTAAAGTGAAGGAAACCCGC 59.804 52.381 0.00 0.00 0.00 6.13
3376 3571 8.901472 ACCTATGGTGTGATATATAGTGATGT 57.099 34.615 0.00 0.00 32.98 3.06
3440 3636 4.492646 ACCCATCCTCACCTGAAATTTTT 58.507 39.130 0.00 0.00 0.00 1.94
3483 3679 4.873817 TGCTCTGTGAATCACAAAATTGG 58.126 39.130 17.41 4.72 44.08 3.16
3573 3769 3.074412 CCAGTCTGTGGTTGGTGATAAC 58.926 50.000 0.00 0.00 42.17 1.89
3590 3786 1.956869 TCATCCACCAGATCACCAGT 58.043 50.000 0.00 0.00 30.59 4.00
3606 3802 5.819991 AGTGGTTGTCCTATGAAACATCAT 58.180 37.500 0.00 0.00 34.23 2.45
3689 3890 5.856126 TCGCTACAAGATACAAAACTTGG 57.144 39.130 0.00 0.00 45.03 3.61
3851 4075 9.032420 GGAGTAGAATTTAGTTCCAGAATAACG 57.968 37.037 0.00 0.00 37.56 3.18
3870 4094 5.897824 AGAATTATGGAACGAAGGGAGTAGA 59.102 40.000 0.00 0.00 0.00 2.59
3880 4104 3.694072 CCAAGGCAAGAATTATGGAACGA 59.306 43.478 0.00 0.00 0.00 3.85
3881 4105 3.443681 ACCAAGGCAAGAATTATGGAACG 59.556 43.478 0.00 0.00 0.00 3.95
3919 4143 9.573133 CCATAATTCTTGTCATGGTTTTAGTTC 57.427 33.333 0.00 0.00 34.46 3.01
3931 4155 5.193527 TCCCTCCATTCCATAATTCTTGTCA 59.806 40.000 0.00 0.00 0.00 3.58
3933 4157 5.732331 TCCCTCCATTCCATAATTCTTGT 57.268 39.130 0.00 0.00 0.00 3.16
3949 4173 5.240403 GCAGTGAAAGAATCATATTCCCTCC 59.760 44.000 0.00 0.00 40.97 4.30
3956 4180 5.121380 ACCCAGCAGTGAAAGAATCATAT 57.879 39.130 0.00 0.00 40.97 1.78
4026 4250 3.547468 CCAGCAAAAGAACTGAAACGTTG 59.453 43.478 0.00 0.00 35.90 4.10
4027 4251 3.192633 ACCAGCAAAAGAACTGAAACGTT 59.807 39.130 0.00 0.00 35.90 3.99
4106 4332 5.458041 TTACTACAAGCCTCAAACGTACT 57.542 39.130 0.00 0.00 0.00 2.73
4161 4388 3.246619 GCACTCTGCACTCTGTACTAAC 58.753 50.000 0.00 0.00 44.26 2.34
4373 4624 0.460284 CCTGACATGTGAGTACGCCC 60.460 60.000 11.54 0.00 0.00 6.13
4451 4704 7.333672 CAGAGATGAAACAAGATGTTGAGATCA 59.666 37.037 9.96 10.20 40.14 2.92
4496 4749 5.476599 TCCATCGGAAATGAAACAAGTTGAT 59.523 36.000 10.54 0.00 0.00 2.57
4604 4862 3.924144 CAGTTCCTCTGGAGTCTTTGAG 58.076 50.000 0.00 0.00 40.23 3.02
4617 4875 4.141824 CCTTCTCCCAGAATACAGTTCCTC 60.142 50.000 0.00 0.00 33.13 3.71
4622 4880 2.551270 TGCCTTCTCCCAGAATACAGT 58.449 47.619 0.00 0.00 33.13 3.55
4680 4939 5.453903 GGTGGTGATTAGCTCATACTGTCAT 60.454 44.000 0.00 0.00 35.97 3.06
4732 4991 3.239449 ACTTATGGCACGGATAGATGGA 58.761 45.455 0.00 0.00 0.00 3.41
4734 4993 5.392767 AGTACTTATGGCACGGATAGATG 57.607 43.478 0.00 0.00 0.00 2.90
4798 5057 1.263484 CATGTTCTCGATGCTGGATGC 59.737 52.381 0.00 0.00 43.25 3.91
4817 5076 1.916506 TTGCCCCGAAAATGATCACA 58.083 45.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.