Multiple sequence alignment - TraesCS2D01G432700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G432700 chr2D 100.000 5500 0 0 1 5500 544683535 544689034 0.000000e+00 10157.0
1 TraesCS2D01G432700 chr2B 89.188 3080 168 68 708 3725 650482173 650485149 0.000000e+00 3690.0
2 TraesCS2D01G432700 chr2B 92.575 1293 66 16 4196 5476 650485368 650486642 0.000000e+00 1829.0
3 TraesCS2D01G432700 chr2B 88.563 717 71 8 1 710 650481295 650482007 0.000000e+00 859.0
4 TraesCS2D01G432700 chr2A 87.147 1945 106 61 708 2571 689169546 689167665 0.000000e+00 2074.0
5 TraesCS2D01G432700 chr2A 88.488 1442 78 38 2683 4091 689167591 689166205 0.000000e+00 1663.0
6 TraesCS2D01G432700 chr2A 93.558 683 30 2 4173 4847 689165840 689165164 0.000000e+00 1005.0
7 TraesCS2D01G432700 chr2A 93.424 517 24 8 4845 5356 689165024 689164513 0.000000e+00 758.0
8 TraesCS2D01G432700 chr2A 88.566 551 58 4 1 548 689170399 689169851 0.000000e+00 664.0
9 TraesCS2D01G432700 chr2A 95.062 81 4 0 4076 4156 689166249 689166169 1.610000e-25 128.0
10 TraesCS2D01G432700 chr2A 96.610 59 2 0 5418 5476 689162907 689162849 1.260000e-16 99.0
11 TraesCS2D01G432700 chr2A 85.556 90 13 0 535 624 638322298 638322209 1.630000e-15 95.3
12 TraesCS2D01G432700 chr3D 88.000 100 11 1 354 453 390197063 390197161 3.480000e-22 117.0
13 TraesCS2D01G432700 chr3D 95.122 41 2 0 392 432 520314084 520314124 1.280000e-06 65.8
14 TraesCS2D01G432700 chr3D 90.476 42 4 0 285 326 430379991 430380032 7.700000e-04 56.5
15 TraesCS2D01G432700 chr5D 76.636 214 39 8 484 688 267083980 267084191 2.100000e-19 108.0
16 TraesCS2D01G432700 chr5D 87.755 49 5 1 264 312 298989450 298989497 7.700000e-04 56.5
17 TraesCS2D01G432700 chr4D 79.747 158 24 4 535 687 486645530 486645376 2.100000e-19 108.0
18 TraesCS2D01G432700 chr4D 96.875 32 1 0 404 435 397152813 397152844 3.000000e-03 54.7
19 TraesCS2D01G432700 chr3B 93.651 63 3 1 2080 2142 813189969 813190030 5.870000e-15 93.5
20 TraesCS2D01G432700 chr3B 90.000 50 5 0 383 432 685301739 685301788 1.280000e-06 65.8
21 TraesCS2D01G432700 chr6B 82.474 97 15 2 363 459 620865663 620865569 3.530000e-12 84.2
22 TraesCS2D01G432700 chr4A 87.013 77 6 4 358 434 731651506 731651434 3.530000e-12 84.2
23 TraesCS2D01G432700 chr6D 80.000 120 15 6 596 710 345792357 345792242 4.570000e-11 80.5
24 TraesCS2D01G432700 chr7A 83.099 71 9 3 358 428 8628087 8628154 1.650000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G432700 chr2D 544683535 544689034 5499 False 10157 10157 100.000000 1 5500 1 chr2D.!!$F1 5499
1 TraesCS2D01G432700 chr2B 650481295 650486642 5347 False 2126 3690 90.108667 1 5476 3 chr2B.!!$F1 5475
2 TraesCS2D01G432700 chr2A 689162849 689170399 7550 True 913 2074 91.836429 1 5476 7 chr2A.!!$R2 5475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 1063 0.750182 GCCCCGCCTATAAACAGCAA 60.750 55.0 0.00 0.0 0.00 3.91 F
1320 1577 0.670546 CTGCGGAATTCACTCGTGGT 60.671 55.0 7.93 0.0 0.00 4.16 F
2208 2484 0.308376 GAGATCTCGTCGCCAGTACC 59.692 60.0 7.04 0.0 0.00 3.34 F
3035 3335 0.250234 CATGGAGTCACGGTCACCAT 59.750 55.0 0.00 0.0 41.25 3.55 F
3036 3336 0.250234 ATGGAGTCACGGTCACCATG 59.750 55.0 0.00 0.0 39.45 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2086 0.101579 GAGGCGTGGCTTCTAGACTC 59.898 60.0 0.00 0.00 31.81 3.36 R
3030 3330 0.179094 GATGCCAATGTGCCATGGTG 60.179 55.0 14.67 2.67 39.00 4.17 R
3837 4164 0.032416 TCCTACTGGCTACTCCCCAC 60.032 60.0 0.00 0.00 0.00 4.61 R
4111 4455 0.096976 CGTGCGAATGGAATGACACC 59.903 55.0 0.00 0.00 0.00 4.16 R
4705 5370 0.110644 CGCGCTCTGGAAACTGAAAC 60.111 55.0 5.56 0.00 37.88 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.663826 AGAGTGGCTCGAGATTGAAC 57.336 50.000 18.75 5.97 35.36 3.18
107 108 9.515020 CATCTCATTAAAGCGCCTTAAATTTTA 57.485 29.630 14.73 3.68 0.00 1.52
113 114 6.647212 AAAGCGCCTTAAATTTTAAGCATC 57.353 33.333 19.22 11.52 0.00 3.91
165 166 7.502177 TTATCGTGACTTCGTTAATCTTGAC 57.498 36.000 0.00 0.00 0.00 3.18
199 200 8.256356 AGCCTAATATTCAGTAGATGAGTGTT 57.744 34.615 0.00 0.00 39.68 3.32
232 233 9.093970 TGTGCATCTATGTTATGTTGTACTTAC 57.906 33.333 0.00 0.00 0.00 2.34
233 234 9.093970 GTGCATCTATGTTATGTTGTACTTACA 57.906 33.333 0.00 4.28 0.00 2.41
315 318 6.477053 TTTTGGATCAAACTTTGACCATGA 57.523 33.333 18.61 12.01 43.48 3.07
317 320 5.452078 TGGATCAAACTTTGACCATGAAC 57.548 39.130 15.97 0.00 43.48 3.18
369 372 6.851330 CGCCATAAAACTAACTAGCTAATTGC 59.149 38.462 0.00 0.00 43.29 3.56
374 377 7.718334 AAAACTAACTAGCTAATTGCCCATT 57.282 32.000 0.00 0.00 44.23 3.16
414 417 8.796475 GGCATACATATTCTAATGGTTCAACAT 58.204 33.333 0.00 0.00 0.00 2.71
435 438 9.048446 CAACATCAATCATGTCTGACATATACA 57.952 33.333 21.88 7.93 45.77 2.29
436 439 9.617523 AACATCAATCATGTCTGACATATACAA 57.382 29.630 21.88 9.34 45.77 2.41
518 524 8.821686 ATTGATTTGAATTGAGTATGGGTACA 57.178 30.769 0.00 0.00 33.09 2.90
527 533 6.620877 TTGAGTATGGGTACAAGAAGACAT 57.379 37.500 0.00 0.00 33.09 3.06
596 602 5.587388 AATTGAGTTAATGCAGGACATGG 57.413 39.130 0.00 0.00 39.60 3.66
616 622 9.573133 GACATGGTTTTAGTAAGATTTGATTGG 57.427 33.333 0.00 0.00 0.00 3.16
648 654 5.104817 CCGGGTTTTCACTAGGATAAGGTAA 60.105 44.000 0.00 0.00 0.00 2.85
649 655 6.047231 CGGGTTTTCACTAGGATAAGGTAAG 58.953 44.000 0.00 0.00 0.00 2.34
702 710 1.462627 AAGGGGAGGGACGAAACCA 60.463 57.895 0.00 0.00 0.00 3.67
704 712 2.047560 GGGAGGGACGAAACCACG 60.048 66.667 0.00 0.00 39.31 4.94
719 905 1.976474 CACGTTTGGGGTGGGGATG 60.976 63.158 0.00 0.00 0.00 3.51
814 1012 2.639286 CAGCGAGTGCAACCAACC 59.361 61.111 0.00 0.00 46.23 3.77
815 1013 2.186160 CAGCGAGTGCAACCAACCA 61.186 57.895 0.00 0.00 46.23 3.67
816 1014 1.893808 AGCGAGTGCAACCAACCAG 60.894 57.895 0.00 0.00 46.23 4.00
817 1015 2.639286 CGAGTGCAACCAACCAGC 59.361 61.111 0.00 0.00 37.80 4.85
818 1016 2.186160 CGAGTGCAACCAACCAGCA 61.186 57.895 0.00 0.00 37.80 4.41
819 1017 1.656441 GAGTGCAACCAACCAGCAG 59.344 57.895 0.00 0.00 39.21 4.24
820 1018 2.028043 GTGCAACCAACCAGCAGC 59.972 61.111 0.00 0.00 39.21 5.25
821 1019 2.441717 TGCAACCAACCAGCAGCA 60.442 55.556 0.00 0.00 33.75 4.41
822 1020 2.056815 TGCAACCAACCAGCAGCAA 61.057 52.632 0.00 0.00 33.75 3.91
859 1063 0.750182 GCCCCGCCTATAAACAGCAA 60.750 55.000 0.00 0.00 0.00 3.91
869 1073 4.082787 CCTATAAACAGCAACCCAACAGTG 60.083 45.833 0.00 0.00 0.00 3.66
880 1084 2.360350 AACAGTGCCCATCAGCCG 60.360 61.111 0.00 0.00 0.00 5.52
915 1149 3.381045 TCGATTCGAGATCAAAATCCCG 58.619 45.455 4.29 0.00 34.71 5.14
916 1150 3.067601 TCGATTCGAGATCAAAATCCCGA 59.932 43.478 4.29 0.00 39.95 5.14
923 1163 1.400494 GATCAAAATCCCGAACACCCG 59.600 52.381 0.00 0.00 0.00 5.28
1097 1338 2.048597 CAAGACAGGTACGCGCCA 60.049 61.111 5.73 0.00 0.00 5.69
1222 1472 3.758755 TGATCAGTTGAGTCAGTTGCT 57.241 42.857 0.00 0.00 0.00 3.91
1278 1528 2.802057 CGACACCTCCGACTTCAGTTTT 60.802 50.000 0.00 0.00 0.00 2.43
1320 1577 0.670546 CTGCGGAATTCACTCGTGGT 60.671 55.000 7.93 0.00 0.00 4.16
1425 1684 3.444742 TCAGGTTAATCTGCAATTGCCTG 59.555 43.478 26.94 21.56 42.43 4.85
1480 1739 3.196469 GTGATAGATAGCCTAGCCATGCA 59.804 47.826 0.00 0.00 32.96 3.96
1489 1748 5.909621 AGCCTAGCCATGCATATTATTTG 57.090 39.130 0.00 0.00 0.00 2.32
1490 1749 4.159135 AGCCTAGCCATGCATATTATTTGC 59.841 41.667 0.00 0.74 40.55 3.68
1494 1753 4.890088 AGCCATGCATATTATTTGCCTTG 58.110 39.130 0.00 3.66 39.39 3.61
1511 1770 3.265791 CCTTGTTCATCTTTCCTCTCCG 58.734 50.000 0.00 0.00 0.00 4.63
1561 1821 1.885871 GGTAGCGGTTAGGTGACGT 59.114 57.895 0.00 0.00 0.00 4.34
1571 1831 3.243636 GGTTAGGTGACGTTTCAGTCTGA 60.244 47.826 0.00 0.00 41.47 3.27
1636 1899 3.323691 TCCTGCAGCTGTTTTCTACTACA 59.676 43.478 16.64 0.00 0.00 2.74
1637 1900 3.681897 CCTGCAGCTGTTTTCTACTACAG 59.318 47.826 16.64 9.39 43.58 2.74
1638 1901 4.310769 CTGCAGCTGTTTTCTACTACAGT 58.689 43.478 16.64 0.00 42.86 3.55
1682 1946 4.807304 GGATCGAACTTACTTTAATCGGCA 59.193 41.667 0.00 0.00 34.47 5.69
1818 2086 2.293122 TCGGATTGGACTTTGCAGTTTG 59.707 45.455 0.00 0.00 31.22 2.93
1833 2101 2.989840 CAGTTTGAGTCTAGAAGCCACG 59.010 50.000 0.00 0.00 0.00 4.94
1948 2217 0.891373 TCTGGCGACCTCTTTCTCAG 59.109 55.000 0.00 0.00 0.00 3.35
1963 2232 1.294659 CTCAGTTTCTGCTGCCGACC 61.295 60.000 0.00 0.00 36.49 4.79
1964 2233 1.597854 CAGTTTCTGCTGCCGACCA 60.598 57.895 0.00 0.00 0.00 4.02
1965 2234 1.598130 AGTTTCTGCTGCCGACCAC 60.598 57.895 0.00 0.00 0.00 4.16
1966 2235 2.664851 TTTCTGCTGCCGACCACG 60.665 61.111 0.00 0.00 39.43 4.94
2027 2296 7.194962 GGTTCAGTTAGGTATACTTCTCTTCG 58.805 42.308 2.25 0.00 0.00 3.79
2036 2305 7.091443 AGGTATACTTCTCTTCGAAACAACAG 58.909 38.462 0.00 0.00 0.00 3.16
2037 2306 6.310711 GGTATACTTCTCTTCGAAACAACAGG 59.689 42.308 0.00 0.00 0.00 4.00
2038 2307 2.872858 ACTTCTCTTCGAAACAACAGGC 59.127 45.455 0.00 0.00 0.00 4.85
2039 2308 2.613026 TCTCTTCGAAACAACAGGCA 57.387 45.000 0.00 0.00 0.00 4.75
2040 2309 2.483876 TCTCTTCGAAACAACAGGCAG 58.516 47.619 0.00 0.00 0.00 4.85
2041 2310 2.102420 TCTCTTCGAAACAACAGGCAGA 59.898 45.455 0.00 0.00 0.00 4.26
2042 2311 3.070018 CTCTTCGAAACAACAGGCAGAT 58.930 45.455 0.00 0.00 0.00 2.90
2043 2312 4.021456 TCTCTTCGAAACAACAGGCAGATA 60.021 41.667 0.00 0.00 0.00 1.98
2044 2313 4.637276 TCTTCGAAACAACAGGCAGATAA 58.363 39.130 0.00 0.00 0.00 1.75
2045 2314 5.060506 TCTTCGAAACAACAGGCAGATAAA 58.939 37.500 0.00 0.00 0.00 1.40
2046 2315 5.529430 TCTTCGAAACAACAGGCAGATAAAA 59.471 36.000 0.00 0.00 0.00 1.52
2047 2316 5.356882 TCGAAACAACAGGCAGATAAAAG 57.643 39.130 0.00 0.00 0.00 2.27
2048 2317 5.060506 TCGAAACAACAGGCAGATAAAAGA 58.939 37.500 0.00 0.00 0.00 2.52
2049 2318 5.529430 TCGAAACAACAGGCAGATAAAAGAA 59.471 36.000 0.00 0.00 0.00 2.52
2050 2319 6.038825 TCGAAACAACAGGCAGATAAAAGAAA 59.961 34.615 0.00 0.00 0.00 2.52
2051 2320 6.360681 CGAAACAACAGGCAGATAAAAGAAAG 59.639 38.462 0.00 0.00 0.00 2.62
2052 2321 6.959639 AACAACAGGCAGATAAAAGAAAGA 57.040 33.333 0.00 0.00 0.00 2.52
2053 2322 7.530426 AACAACAGGCAGATAAAAGAAAGAT 57.470 32.000 0.00 0.00 0.00 2.40
2054 2323 7.150783 ACAACAGGCAGATAAAAGAAAGATC 57.849 36.000 0.00 0.00 0.00 2.75
2055 2324 6.151817 ACAACAGGCAGATAAAAGAAAGATCC 59.848 38.462 0.00 0.00 0.00 3.36
2056 2325 5.819991 ACAGGCAGATAAAAGAAAGATCCA 58.180 37.500 0.00 0.00 0.00 3.41
2083 2359 2.138320 CACTTGCACGAGACTGAATGT 58.862 47.619 0.00 0.00 0.00 2.71
2085 2361 2.545526 ACTTGCACGAGACTGAATGTTG 59.454 45.455 0.00 0.00 0.00 3.33
2090 2366 1.202639 ACGAGACTGAATGTTGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
2169 2445 1.129998 CTGCAAGTGCGAGGAATGAAG 59.870 52.381 0.00 0.00 45.83 3.02
2208 2484 0.308376 GAGATCTCGTCGCCAGTACC 59.692 60.000 7.04 0.00 0.00 3.34
2393 2676 2.627945 TGACACCGTGCAAATCTATCC 58.372 47.619 0.00 0.00 0.00 2.59
2443 2726 2.570415 TGTCGTGTCCTCTTCTCTCT 57.430 50.000 0.00 0.00 0.00 3.10
2444 2727 2.428491 TGTCGTGTCCTCTTCTCTCTC 58.572 52.381 0.00 0.00 0.00 3.20
2463 2746 1.073897 GCAGCTTCCCTTGTCTGGT 59.926 57.895 0.00 0.00 0.00 4.00
2464 2747 0.957888 GCAGCTTCCCTTGTCTGGTC 60.958 60.000 0.00 0.00 0.00 4.02
2465 2748 0.689623 CAGCTTCCCTTGTCTGGTCT 59.310 55.000 0.00 0.00 0.00 3.85
2524 2807 4.646492 GTCATTGCCCTCCAATAATTCAGT 59.354 41.667 0.00 0.00 42.15 3.41
2526 2809 5.360714 TCATTGCCCTCCAATAATTCAGTTC 59.639 40.000 0.00 0.00 42.15 3.01
2527 2810 4.591321 TGCCCTCCAATAATTCAGTTCT 57.409 40.909 0.00 0.00 0.00 3.01
2606 2894 1.508088 CCAATGGTTCTCTTGCGGC 59.492 57.895 0.00 0.00 0.00 6.53
2608 2896 2.040544 AATGGTTCTCTTGCGGCCG 61.041 57.895 24.05 24.05 0.00 6.13
2615 2903 3.376935 CTCTTGCGGCCGTCAGGAT 62.377 63.158 28.70 0.00 41.02 3.24
2616 2904 2.016393 CTCTTGCGGCCGTCAGGATA 62.016 60.000 28.70 9.06 41.02 2.59
2618 2906 1.224069 CTTGCGGCCGTCAGGATATG 61.224 60.000 28.70 8.26 41.02 1.78
2619 2907 2.357517 GCGGCCGTCAGGATATGG 60.358 66.667 28.70 0.00 41.02 2.74
2623 2911 3.403936 GCCGTCAGGATATGGCTTT 57.596 52.632 0.00 0.00 46.29 3.51
2624 2912 1.230324 GCCGTCAGGATATGGCTTTC 58.770 55.000 0.00 0.00 46.29 2.62
2625 2913 1.202698 GCCGTCAGGATATGGCTTTCT 60.203 52.381 0.00 0.00 46.29 2.52
2663 2958 4.509230 CACAATCATTGGGAGATAGTGTCG 59.491 45.833 1.58 0.00 35.62 4.35
2664 2959 2.890808 TCATTGGGAGATAGTGTCGC 57.109 50.000 0.00 0.00 0.00 5.19
2665 2960 1.412710 TCATTGGGAGATAGTGTCGCC 59.587 52.381 0.74 0.74 45.24 5.54
2671 2966 3.746045 GGAGATAGTGTCGCCCATAAA 57.254 47.619 0.00 0.00 40.60 1.40
2672 2967 4.067972 GGAGATAGTGTCGCCCATAAAA 57.932 45.455 0.00 0.00 40.60 1.52
2673 2968 3.808174 GGAGATAGTGTCGCCCATAAAAC 59.192 47.826 0.00 0.00 40.60 2.43
2674 2969 4.443034 GGAGATAGTGTCGCCCATAAAACT 60.443 45.833 0.00 0.00 40.60 2.66
2675 2970 5.099042 AGATAGTGTCGCCCATAAAACTT 57.901 39.130 0.00 0.00 0.00 2.66
2676 2971 5.497474 AGATAGTGTCGCCCATAAAACTTT 58.503 37.500 0.00 0.00 0.00 2.66
2677 2972 6.646267 AGATAGTGTCGCCCATAAAACTTTA 58.354 36.000 0.00 0.00 0.00 1.85
2678 2973 7.107542 AGATAGTGTCGCCCATAAAACTTTAA 58.892 34.615 0.00 0.00 0.00 1.52
2679 2974 5.366829 AGTGTCGCCCATAAAACTTTAAC 57.633 39.130 0.00 0.00 0.00 2.01
2680 2975 4.216902 AGTGTCGCCCATAAAACTTTAACC 59.783 41.667 0.00 0.00 0.00 2.85
2681 2976 3.188873 TGTCGCCCATAAAACTTTAACCG 59.811 43.478 0.00 0.00 0.00 4.44
2697 2992 0.756903 ACCGCACCAACTTGTCTAGT 59.243 50.000 0.00 0.00 39.32 2.57
2698 2993 1.965643 ACCGCACCAACTTGTCTAGTA 59.034 47.619 0.00 0.00 35.54 1.82
2699 2994 2.029290 ACCGCACCAACTTGTCTAGTAG 60.029 50.000 0.00 0.00 35.54 2.57
2714 3013 5.527951 TGTCTAGTAGAACTCGAGCTTATGG 59.472 44.000 13.61 0.00 0.00 2.74
2715 3014 3.719173 AGTAGAACTCGAGCTTATGGC 57.281 47.619 13.61 0.00 42.19 4.40
2720 3019 1.123077 ACTCGAGCTTATGGCCATGA 58.877 50.000 29.04 19.74 43.05 3.07
2723 3022 1.486310 TCGAGCTTATGGCCATGAACT 59.514 47.619 29.04 20.72 43.05 3.01
2736 3035 2.810274 CCATGAACTTATGGCAGGATCG 59.190 50.000 0.00 0.00 41.02 3.69
2754 3053 3.257469 TCGTCGTAGGACACTGTATCT 57.743 47.619 15.36 0.00 43.61 1.98
2757 3056 4.807834 TCGTCGTAGGACACTGTATCTTAG 59.192 45.833 15.36 0.00 43.61 2.18
2802 3101 3.840890 TCGTATGCACAAATCAAACCC 57.159 42.857 0.00 0.00 0.00 4.11
2803 3102 3.149981 TCGTATGCACAAATCAAACCCA 58.850 40.909 0.00 0.00 0.00 4.51
2806 3105 1.047002 TGCACAAATCAAACCCAGGG 58.953 50.000 2.85 2.85 0.00 4.45
2811 3110 2.087857 AAATCAAACCCAGGGCCCGA 62.088 55.000 18.44 5.84 0.00 5.14
2826 3125 2.126463 CGAGAAGAACGCCGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
2891 3190 3.872696 TGTTGGAACAGTGCGATGATAT 58.127 40.909 0.00 0.00 42.39 1.63
3028 3328 1.915614 GCAGCAACATGGAGTCACGG 61.916 60.000 0.00 0.00 0.00 4.94
3029 3329 0.603707 CAGCAACATGGAGTCACGGT 60.604 55.000 0.00 0.00 0.00 4.83
3030 3330 0.320771 AGCAACATGGAGTCACGGTC 60.321 55.000 0.00 0.00 0.00 4.79
3031 3331 0.602638 GCAACATGGAGTCACGGTCA 60.603 55.000 0.00 0.00 0.00 4.02
3032 3332 1.148310 CAACATGGAGTCACGGTCAC 58.852 55.000 0.00 0.00 0.00 3.67
3035 3335 0.250234 CATGGAGTCACGGTCACCAT 59.750 55.000 0.00 0.00 41.25 3.55
3036 3336 0.250234 ATGGAGTCACGGTCACCATG 59.750 55.000 0.00 0.00 39.45 3.66
3037 3337 1.079127 GGAGTCACGGTCACCATGG 60.079 63.158 11.19 11.19 0.00 3.66
3038 3338 1.741770 GAGTCACGGTCACCATGGC 60.742 63.158 13.04 0.00 0.00 4.40
3039 3339 2.031919 GTCACGGTCACCATGGCA 59.968 61.111 13.04 0.00 0.00 4.92
3150 3460 5.011635 AGGGCGTATATATTCATGTGTGTCA 59.988 40.000 0.00 0.00 0.00 3.58
3220 3530 2.571216 CGTGGTGAGAACCCGAGGT 61.571 63.158 0.00 0.00 37.65 3.85
3281 3595 4.407365 TCTAGATAAGGATGCATGACGGA 58.593 43.478 2.46 0.00 0.00 4.69
3419 3735 7.604164 TGCTACTTCATCTTTTACTTCCTCTTG 59.396 37.037 0.00 0.00 0.00 3.02
3476 3792 0.381801 GTGTTTCTGTGTGGTGCCAG 59.618 55.000 0.00 0.00 0.00 4.85
3486 3806 4.854173 TGTGTGGTGCCAGTAATGATATT 58.146 39.130 0.00 0.00 0.00 1.28
3492 3812 5.181056 TGGTGCCAGTAATGATATTTATGCG 59.819 40.000 0.00 0.00 0.00 4.73
3505 3825 7.026562 TGATATTTATGCGGTTGTGTTCTTTG 58.973 34.615 0.00 0.00 0.00 2.77
3566 3886 2.357517 ACTCGGCAGCTTCGGTTG 60.358 61.111 6.41 1.44 0.00 3.77
3632 3952 7.037514 GGCCCCAAGGTCTTATTAATAGATACT 60.038 40.741 0.00 0.00 33.65 2.12
3633 3953 9.043548 GCCCCAAGGTCTTATTAATAGATACTA 57.956 37.037 0.00 0.00 34.57 1.82
3657 3977 2.467566 ACTTTAGTACACGGGCCTTG 57.532 50.000 8.71 8.71 0.00 3.61
3725 4045 1.078848 CGACCTGCCAGGAAAGGAG 60.079 63.158 19.90 5.40 37.67 3.69
3726 4046 1.301293 GACCTGCCAGGAAAGGAGG 59.699 63.158 19.90 2.69 37.67 4.30
3727 4047 1.151810 ACCTGCCAGGAAAGGAGGA 60.152 57.895 19.90 0.00 37.67 3.71
3728 4048 0.772124 ACCTGCCAGGAAAGGAGGAA 60.772 55.000 19.90 0.00 37.67 3.36
3729 4049 0.627986 CCTGCCAGGAAAGGAGGAAT 59.372 55.000 4.15 0.00 37.67 3.01
3730 4050 1.684248 CCTGCCAGGAAAGGAGGAATG 60.684 57.143 4.15 0.00 37.67 2.67
3731 4051 0.332632 TGCCAGGAAAGGAGGAATGG 59.667 55.000 0.00 0.00 0.00 3.16
3732 4052 0.396278 GCCAGGAAAGGAGGAATGGG 60.396 60.000 0.00 0.00 0.00 4.00
3733 4053 0.396278 CCAGGAAAGGAGGAATGGGC 60.396 60.000 0.00 0.00 0.00 5.36
3734 4054 0.627986 CAGGAAAGGAGGAATGGGCT 59.372 55.000 0.00 0.00 0.00 5.19
3735 4055 1.006400 CAGGAAAGGAGGAATGGGCTT 59.994 52.381 0.00 0.00 0.00 4.35
3736 4056 1.286257 AGGAAAGGAGGAATGGGCTTC 59.714 52.381 0.00 0.00 0.00 3.86
3745 4065 2.808906 GAATGGGCTTCCACTTAGGT 57.191 50.000 0.00 0.00 44.44 3.08
3788 4115 0.927537 GCCGTTTGTGCAAGGAAAAC 59.072 50.000 0.00 0.00 0.00 2.43
3807 4134 4.866508 AACGTGAAGTAGGAGATGTTCA 57.133 40.909 0.00 0.00 0.00 3.18
3808 4135 4.866508 ACGTGAAGTAGGAGATGTTCAA 57.133 40.909 0.00 0.00 30.94 2.69
3839 4166 7.747155 AAAAATAAAAATAAAACCGGGGGTG 57.253 32.000 6.32 0.00 35.34 4.61
3840 4167 5.423704 AATAAAAATAAAACCGGGGGTGG 57.576 39.130 6.32 0.00 35.34 4.61
3841 4168 1.646912 AAAATAAAACCGGGGGTGGG 58.353 50.000 6.32 0.00 35.34 4.61
3842 4169 0.252330 AAATAAAACCGGGGGTGGGG 60.252 55.000 6.32 0.00 35.34 4.96
3843 4170 1.147837 AATAAAACCGGGGGTGGGGA 61.148 55.000 6.32 0.00 35.34 4.81
3844 4171 1.577291 ATAAAACCGGGGGTGGGGAG 61.577 60.000 6.32 0.00 35.34 4.30
3883 4210 4.789012 TGACATCAAAAGGATTGAAGGC 57.211 40.909 0.00 0.00 32.57 4.35
3977 4319 5.231265 ACCGTTCAAAGAAAAAGTCACTC 57.769 39.130 0.00 0.00 0.00 3.51
4045 4389 5.701290 AGAGAACAAGTATACACAACAAGCC 59.299 40.000 5.50 0.00 0.00 4.35
4046 4390 4.451096 AGAACAAGTATACACAACAAGCCG 59.549 41.667 5.50 0.00 0.00 5.52
4047 4391 3.997762 ACAAGTATACACAACAAGCCGA 58.002 40.909 5.50 0.00 0.00 5.54
4048 4392 3.994392 ACAAGTATACACAACAAGCCGAG 59.006 43.478 5.50 0.00 0.00 4.63
4049 4393 3.247006 AGTATACACAACAAGCCGAGG 57.753 47.619 5.50 0.00 0.00 4.63
4067 4411 3.741388 CGAGGTGAGGTGTCATTATTCCC 60.741 52.174 0.00 0.00 34.36 3.97
4096 4440 6.759497 AAAAGCTGAGGTGTCATTATTACC 57.241 37.500 0.00 0.00 34.68 2.85
4098 4442 5.700402 AGCTGAGGTGTCATTATTACCTT 57.300 39.130 0.00 0.00 44.51 3.50
4099 4443 5.431765 AGCTGAGGTGTCATTATTACCTTG 58.568 41.667 0.00 0.00 44.51 3.61
4100 4444 5.189736 AGCTGAGGTGTCATTATTACCTTGA 59.810 40.000 0.00 0.00 44.51 3.02
4101 4445 5.880332 GCTGAGGTGTCATTATTACCTTGAA 59.120 40.000 0.00 0.00 44.51 2.69
4102 4446 6.374333 GCTGAGGTGTCATTATTACCTTGAAA 59.626 38.462 0.00 0.00 44.51 2.69
4103 4447 7.094377 GCTGAGGTGTCATTATTACCTTGAAAA 60.094 37.037 0.00 0.00 44.51 2.29
4104 4448 8.698973 TGAGGTGTCATTATTACCTTGAAAAA 57.301 30.769 0.00 0.00 44.51 1.94
4157 4501 4.264543 CAACGAGTGCCACATATCTTTC 57.735 45.455 0.00 0.00 0.00 2.62
4158 4502 3.610040 ACGAGTGCCACATATCTTTCA 57.390 42.857 0.00 0.00 0.00 2.69
4159 4503 4.142609 ACGAGTGCCACATATCTTTCAT 57.857 40.909 0.00 0.00 0.00 2.57
4160 4504 4.122776 ACGAGTGCCACATATCTTTCATC 58.877 43.478 0.00 0.00 0.00 2.92
4161 4505 4.141846 ACGAGTGCCACATATCTTTCATCT 60.142 41.667 0.00 0.00 0.00 2.90
4162 4506 4.447054 CGAGTGCCACATATCTTTCATCTC 59.553 45.833 0.00 0.00 0.00 2.75
4163 4507 4.712476 AGTGCCACATATCTTTCATCTCC 58.288 43.478 0.00 0.00 0.00 3.71
4164 4508 3.817647 GTGCCACATATCTTTCATCTCCC 59.182 47.826 0.00 0.00 0.00 4.30
4165 4509 3.181440 TGCCACATATCTTTCATCTCCCC 60.181 47.826 0.00 0.00 0.00 4.81
4166 4510 3.181440 GCCACATATCTTTCATCTCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
4167 4511 4.392940 CCACATATCTTTCATCTCCCCAC 58.607 47.826 0.00 0.00 0.00 4.61
4168 4512 4.060900 CACATATCTTTCATCTCCCCACG 58.939 47.826 0.00 0.00 0.00 4.94
4169 4513 3.967326 ACATATCTTTCATCTCCCCACGA 59.033 43.478 0.00 0.00 0.00 4.35
4170 4514 4.408921 ACATATCTTTCATCTCCCCACGAA 59.591 41.667 0.00 0.00 0.00 3.85
4171 4515 5.072329 ACATATCTTTCATCTCCCCACGAAT 59.928 40.000 0.00 0.00 0.00 3.34
4172 4516 4.510167 ATCTTTCATCTCCCCACGAATT 57.490 40.909 0.00 0.00 0.00 2.17
4173 4517 3.873910 TCTTTCATCTCCCCACGAATTC 58.126 45.455 0.00 0.00 0.00 2.17
4174 4518 2.710096 TTCATCTCCCCACGAATTCC 57.290 50.000 0.00 0.00 0.00 3.01
4175 4519 0.837272 TCATCTCCCCACGAATTCCC 59.163 55.000 0.00 0.00 0.00 3.97
4176 4520 0.546122 CATCTCCCCACGAATTCCCA 59.454 55.000 0.00 0.00 0.00 4.37
4177 4521 1.064758 CATCTCCCCACGAATTCCCAA 60.065 52.381 0.00 0.00 0.00 4.12
4178 4522 0.618458 TCTCCCCACGAATTCCCAAG 59.382 55.000 0.00 0.00 0.00 3.61
4179 4523 0.394352 CTCCCCACGAATTCCCAAGG 60.394 60.000 0.00 0.00 0.00 3.61
4180 4524 1.137594 TCCCCACGAATTCCCAAGGT 61.138 55.000 0.00 0.00 0.00 3.50
4181 4525 0.965363 CCCCACGAATTCCCAAGGTG 60.965 60.000 0.00 1.82 0.00 4.00
4182 4526 0.251165 CCCACGAATTCCCAAGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
4522 5178 0.176680 CCCTGAGGACGACATGGAAG 59.823 60.000 0.00 0.00 33.47 3.46
4523 5179 0.176680 CCTGAGGACGACATGGAAGG 59.823 60.000 0.00 0.00 0.00 3.46
4524 5180 1.186200 CTGAGGACGACATGGAAGGA 58.814 55.000 0.00 0.00 0.00 3.36
4525 5181 1.550524 CTGAGGACGACATGGAAGGAA 59.449 52.381 0.00 0.00 0.00 3.36
4526 5182 1.275291 TGAGGACGACATGGAAGGAAC 59.725 52.381 0.00 0.00 0.00 3.62
4527 5183 1.275291 GAGGACGACATGGAAGGAACA 59.725 52.381 0.00 0.00 0.00 3.18
4528 5184 1.276421 AGGACGACATGGAAGGAACAG 59.724 52.381 0.00 0.00 0.00 3.16
4596 5252 4.100653 GGAGGGCCGATTTAGTAAGTAAGT 59.899 45.833 0.00 0.00 0.00 2.24
4636 5292 4.495422 AGTGTTAATTAGTCAGTCTGGCG 58.505 43.478 0.00 0.00 0.00 5.69
4694 5359 2.762234 CCGTCGACTCTCCGGGAAG 61.762 68.421 14.70 1.39 38.09 3.46
4705 5370 2.496817 CGGGAAGAAGAGCGAGGG 59.503 66.667 0.00 0.00 0.00 4.30
4715 5380 2.171341 AGAGCGAGGGTTTCAGTTTC 57.829 50.000 0.00 0.00 0.00 2.78
4780 5446 1.869132 GTTGCATGTCGATTGCGCC 60.869 57.895 4.18 7.30 43.10 6.53
4826 5492 1.440618 TGGAGCAAGAGGGGTTTACA 58.559 50.000 0.00 0.00 0.00 2.41
4883 5692 7.921214 TCTCTGTCGTTCATATGTCCTTTAATC 59.079 37.037 1.90 0.00 0.00 1.75
4986 5795 1.318576 GTATGGCGAAATGAAGGGGG 58.681 55.000 0.00 0.00 0.00 5.40
5050 5860 0.456221 AGTAATGGAGGAGCACGACG 59.544 55.000 0.00 0.00 0.00 5.12
5079 5890 2.300956 TGCAGGGTTTCTTTATGGCA 57.699 45.000 0.00 0.00 0.00 4.92
5168 5979 4.069232 CTTGCGGAGAGGCGACCA 62.069 66.667 0.00 0.00 35.06 4.02
5192 6003 2.029828 GCATTATCCATCGACGTCTCCT 60.030 50.000 14.70 0.00 0.00 3.69
5211 6022 6.710295 GTCTCCTTTTTAATGGTGCCATTTTT 59.290 34.615 19.99 1.65 43.32 1.94
5212 6023 7.875554 GTCTCCTTTTTAATGGTGCCATTTTTA 59.124 33.333 19.99 1.67 43.32 1.52
5253 6064 7.241376 GTGTTGCAGGTTATACTTGTATTGTC 58.759 38.462 0.00 0.00 0.00 3.18
5269 6080 2.033141 TCTGGCACCAGCTTCTGC 59.967 61.111 12.03 4.05 43.31 4.26
5319 6130 5.364778 GGTTTGGCAGAAGTGGTTTTTATT 58.635 37.500 0.00 0.00 0.00 1.40
5320 6131 6.463190 GGGTTTGGCAGAAGTGGTTTTTATTA 60.463 38.462 0.00 0.00 0.00 0.98
5356 6167 0.813184 ACGATGCAATTCAGGCAAGG 59.187 50.000 0.00 0.00 45.60 3.61
5376 7735 2.224257 GGTGCAGCTTCCAAAATTTCCA 60.224 45.455 9.07 0.00 0.00 3.53
5391 7750 6.790232 AAATTTCCAAAAACTGAGACCTCA 57.210 33.333 0.00 0.00 38.06 3.86
5403 7762 3.635591 TGAGACCTCAGATCAGTGCATA 58.364 45.455 0.00 0.00 34.14 3.14
5407 7766 5.639139 AGACCTCAGATCAGTGCATATCTA 58.361 41.667 8.36 0.20 31.25 1.98
5408 7767 5.476599 AGACCTCAGATCAGTGCATATCTAC 59.523 44.000 8.36 0.00 31.25 2.59
5472 7831 5.396484 CAGTGCAGTTTGGAATAATCACTG 58.604 41.667 0.00 0.00 42.41 3.66
5476 7835 5.534278 TGCAGTTTGGAATAATCACTGTCAA 59.466 36.000 0.00 0.00 37.71 3.18
5477 7836 5.858581 GCAGTTTGGAATAATCACTGTCAAC 59.141 40.000 0.00 0.00 37.71 3.18
5478 7837 6.381801 CAGTTTGGAATAATCACTGTCAACC 58.618 40.000 0.00 0.00 31.91 3.77
5479 7838 6.207417 CAGTTTGGAATAATCACTGTCAACCT 59.793 38.462 0.00 0.00 31.91 3.50
5480 7839 6.777580 AGTTTGGAATAATCACTGTCAACCTT 59.222 34.615 0.00 0.00 0.00 3.50
5481 7840 7.287696 AGTTTGGAATAATCACTGTCAACCTTT 59.712 33.333 0.00 0.00 0.00 3.11
5482 7841 7.595819 TTGGAATAATCACTGTCAACCTTTT 57.404 32.000 0.00 0.00 0.00 2.27
5483 7842 7.214467 TGGAATAATCACTGTCAACCTTTTC 57.786 36.000 0.00 0.00 0.00 2.29
5484 7843 7.004086 TGGAATAATCACTGTCAACCTTTTCT 58.996 34.615 0.00 0.00 0.00 2.52
5485 7844 8.160765 TGGAATAATCACTGTCAACCTTTTCTA 58.839 33.333 0.00 0.00 0.00 2.10
5486 7845 9.010029 GGAATAATCACTGTCAACCTTTTCTAA 57.990 33.333 0.00 0.00 0.00 2.10
5489 7848 7.639113 AATCACTGTCAACCTTTTCTAAACA 57.361 32.000 0.00 0.00 0.00 2.83
5490 7849 6.431198 TCACTGTCAACCTTTTCTAAACAC 57.569 37.500 0.00 0.00 0.00 3.32
5491 7850 5.355910 TCACTGTCAACCTTTTCTAAACACC 59.644 40.000 0.00 0.00 0.00 4.16
5492 7851 5.124776 CACTGTCAACCTTTTCTAAACACCA 59.875 40.000 0.00 0.00 0.00 4.17
5493 7852 5.891551 ACTGTCAACCTTTTCTAAACACCAT 59.108 36.000 0.00 0.00 0.00 3.55
5494 7853 6.039382 ACTGTCAACCTTTTCTAAACACCATC 59.961 38.462 0.00 0.00 0.00 3.51
5495 7854 5.008217 TGTCAACCTTTTCTAAACACCATCG 59.992 40.000 0.00 0.00 0.00 3.84
5496 7855 4.023536 TCAACCTTTTCTAAACACCATCGC 60.024 41.667 0.00 0.00 0.00 4.58
5497 7856 2.482721 ACCTTTTCTAAACACCATCGCG 59.517 45.455 0.00 0.00 0.00 5.87
5498 7857 2.482721 CCTTTTCTAAACACCATCGCGT 59.517 45.455 5.77 0.00 0.00 6.01
5499 7858 3.479006 CTTTTCTAAACACCATCGCGTG 58.521 45.455 5.77 3.64 39.75 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.866486 GCATTCAACCAATGGTTCAATCTC 59.134 41.667 15.79 4.86 43.05 2.75
26 27 3.763360 TGAACTAGGCATTCAACCAATGG 59.237 43.478 0.00 0.00 42.18 3.16
107 108 8.356657 GCTATCGACTATAATATCAGGATGCTT 58.643 37.037 0.00 0.00 34.76 3.91
113 114 9.838975 GATCATGCTATCGACTATAATATCAGG 57.161 37.037 0.00 0.00 0.00 3.86
199 200 3.862877 AACATAGATGCACATAGGCCA 57.137 42.857 5.01 0.00 0.00 5.36
246 249 9.729281 CTTGGACAAATTAAGTACCCTAAACTA 57.271 33.333 0.00 0.00 0.00 2.24
345 348 7.139392 GGCAATTAGCTAGTTAGTTTTATGGC 58.861 38.462 0.61 0.00 44.79 4.40
369 372 1.542987 CCCCTGTTTGCAACAAATGGG 60.543 52.381 18.92 18.92 41.62 4.00
374 377 1.342819 GTATGCCCCTGTTTGCAACAA 59.657 47.619 0.00 0.00 41.61 2.83
420 423 9.881649 GATGGATGTATTGTATATGTCAGACAT 57.118 33.333 20.04 20.04 42.35 3.06
492 497 9.253832 TGTACCCATACTCAATTCAAATCAATT 57.746 29.630 0.00 0.00 32.00 2.32
503 509 6.620877 TGTCTTCTTGTACCCATACTCAAT 57.379 37.500 0.00 0.00 32.00 2.57
568 574 7.471721 TGTCCTGCATTAACTCAATTAAATCG 58.528 34.615 0.00 0.00 36.35 3.34
616 622 3.653539 AGTGAAAACCCGGCATTAAAC 57.346 42.857 0.00 0.00 0.00 2.01
702 710 2.438795 CATCCCCACCCCAAACGT 59.561 61.111 0.00 0.00 0.00 3.99
704 712 2.683572 GCCATCCCCACCCCAAAC 60.684 66.667 0.00 0.00 0.00 2.93
814 1012 0.872881 GCTGGTTGTTGTTGCTGCTG 60.873 55.000 0.00 0.00 0.00 4.41
815 1013 1.438814 GCTGGTTGTTGTTGCTGCT 59.561 52.632 0.00 0.00 0.00 4.24
816 1014 1.945662 CGCTGGTTGTTGTTGCTGC 60.946 57.895 0.00 0.00 0.00 5.25
817 1015 1.945662 GCGCTGGTTGTTGTTGCTG 60.946 57.895 0.00 0.00 0.00 4.41
818 1016 2.412937 GCGCTGGTTGTTGTTGCT 59.587 55.556 0.00 0.00 0.00 3.91
819 1017 2.658268 GGCGCTGGTTGTTGTTGC 60.658 61.111 7.64 0.00 0.00 4.17
820 1018 2.353376 CGGCGCTGGTTGTTGTTG 60.353 61.111 8.83 0.00 0.00 3.33
821 1019 4.264638 GCGGCGCTGGTTGTTGTT 62.265 61.111 26.86 0.00 0.00 2.83
859 1063 1.075482 CTGATGGGCACTGTTGGGT 59.925 57.895 0.00 0.00 0.00 4.51
881 1085 2.713139 GAATCGAATCGAACGCGCCG 62.713 60.000 10.12 11.05 39.99 6.46
923 1163 4.567385 CTCGCTCTCGCTCTGGCC 62.567 72.222 0.00 0.00 35.26 5.36
1116 1357 2.398554 CCAATGGACGGCGGTGAAG 61.399 63.158 13.24 0.00 0.00 3.02
1117 1358 2.359354 CCAATGGACGGCGGTGAA 60.359 61.111 13.24 0.00 0.00 3.18
1118 1359 3.599285 GACCAATGGACGGCGGTGA 62.599 63.158 13.24 0.00 0.00 4.02
1119 1360 3.124921 GACCAATGGACGGCGGTG 61.125 66.667 13.24 0.64 0.00 4.94
1120 1361 4.752879 CGACCAATGGACGGCGGT 62.753 66.667 15.88 0.00 37.24 5.68
1124 1374 1.591594 CGGATCGACCAATGGACGG 60.592 63.158 22.23 4.23 40.79 4.79
1172 1422 0.525668 CACTGGAGTACGACGCATCC 60.526 60.000 0.00 0.26 0.00 3.51
1222 1472 5.885912 GGCAACCATAAACCTCTAATTCAGA 59.114 40.000 0.00 0.00 0.00 3.27
1267 1517 5.803020 ACTCAACTGACAAAACTGAAGTC 57.197 39.130 0.00 0.00 0.00 3.01
1278 1528 3.327464 TGATCATGGGAACTCAACTGACA 59.673 43.478 0.00 0.00 0.00 3.58
1320 1577 3.630312 GCAGAGTGGAGTGGTAAAACAAA 59.370 43.478 0.00 0.00 0.00 2.83
1393 1651 5.584649 TGCAGATTAACCTGAATAAACCTCG 59.415 40.000 0.00 0.00 36.29 4.63
1425 1684 7.254727 GCTGAGTATGAAATTCTCTGTTCATCC 60.255 40.741 2.34 0.00 42.18 3.51
1480 1739 9.205513 AGGAAAGATGAACAAGGCAAATAATAT 57.794 29.630 0.00 0.00 0.00 1.28
1489 1748 3.013219 GGAGAGGAAAGATGAACAAGGC 58.987 50.000 0.00 0.00 0.00 4.35
1490 1749 3.265791 CGGAGAGGAAAGATGAACAAGG 58.734 50.000 0.00 0.00 0.00 3.61
1571 1831 9.780186 GGAGGCTGTATAAACTGACTAATTATT 57.220 33.333 0.00 0.00 42.55 1.40
1818 2086 0.101579 GAGGCGTGGCTTCTAGACTC 59.898 60.000 0.00 0.00 31.81 3.36
1948 2217 2.946762 GTGGTCGGCAGCAGAAAC 59.053 61.111 0.00 0.00 0.00 2.78
2027 2296 7.425606 TCTTTCTTTTATCTGCCTGTTGTTTC 58.574 34.615 0.00 0.00 0.00 2.78
2036 2305 6.601217 AGAGTTGGATCTTTCTTTTATCTGCC 59.399 38.462 0.00 0.00 0.00 4.85
2037 2306 7.470900 CAGAGTTGGATCTTTCTTTTATCTGC 58.529 38.462 0.00 0.00 0.00 4.26
2038 2307 7.120285 TGCAGAGTTGGATCTTTCTTTTATCTG 59.880 37.037 0.00 0.00 33.99 2.90
2039 2308 7.120432 GTGCAGAGTTGGATCTTTCTTTTATCT 59.880 37.037 0.00 0.00 0.00 1.98
2040 2309 7.120432 AGTGCAGAGTTGGATCTTTCTTTTATC 59.880 37.037 0.00 0.00 0.00 1.75
2041 2310 6.944862 AGTGCAGAGTTGGATCTTTCTTTTAT 59.055 34.615 0.00 0.00 0.00 1.40
2042 2311 6.299141 AGTGCAGAGTTGGATCTTTCTTTTA 58.701 36.000 0.00 0.00 0.00 1.52
2043 2312 5.136105 AGTGCAGAGTTGGATCTTTCTTTT 58.864 37.500 0.00 0.00 0.00 2.27
2044 2313 4.723309 AGTGCAGAGTTGGATCTTTCTTT 58.277 39.130 0.00 0.00 0.00 2.52
2045 2314 4.363991 AGTGCAGAGTTGGATCTTTCTT 57.636 40.909 0.00 0.00 0.00 2.52
2046 2315 4.070716 CAAGTGCAGAGTTGGATCTTTCT 58.929 43.478 0.00 0.00 0.00 2.52
2047 2316 3.365767 GCAAGTGCAGAGTTGGATCTTTC 60.366 47.826 0.00 0.00 41.59 2.62
2048 2317 2.555757 GCAAGTGCAGAGTTGGATCTTT 59.444 45.455 0.00 0.00 41.59 2.52
2049 2318 2.157738 GCAAGTGCAGAGTTGGATCTT 58.842 47.619 0.00 0.00 41.59 2.40
2050 2319 1.818642 GCAAGTGCAGAGTTGGATCT 58.181 50.000 0.00 0.00 41.59 2.75
2085 2361 1.239347 GAGGTTGACTTCCTTGGCAC 58.761 55.000 0.00 0.00 35.20 5.01
2090 2366 1.068121 CAGGGGAGGTTGACTTCCTT 58.932 55.000 11.47 0.00 45.17 3.36
2393 2676 7.221838 GCACTGCTACTACTTTTTCTCTCTATG 59.778 40.741 0.00 0.00 0.00 2.23
2443 2726 1.004560 CAGACAAGGGAAGCTGCGA 60.005 57.895 0.00 0.00 0.00 5.10
2444 2727 2.037136 CCAGACAAGGGAAGCTGCG 61.037 63.158 0.00 0.00 0.00 5.18
2463 2746 4.163427 AGACAAGGATCTCAAGACCAAGA 58.837 43.478 0.00 0.00 0.00 3.02
2464 2747 4.550076 AGACAAGGATCTCAAGACCAAG 57.450 45.455 0.00 0.00 0.00 3.61
2465 2748 4.982241 AAGACAAGGATCTCAAGACCAA 57.018 40.909 0.00 0.00 0.00 3.67
2502 2785 4.870636 ACTGAATTATTGGAGGGCAATGA 58.129 39.130 0.00 0.00 0.00 2.57
2524 2807 0.319555 CTCGGTTCAGACGGCAAGAA 60.320 55.000 0.00 0.00 0.00 2.52
2526 2809 2.383527 GCTCGGTTCAGACGGCAAG 61.384 63.158 0.00 0.00 0.00 4.01
2527 2810 2.357034 GCTCGGTTCAGACGGCAA 60.357 61.111 0.00 0.00 0.00 4.52
2575 2863 2.360350 ATTGGCAGTGGCAGACCG 60.360 61.111 19.65 0.00 43.71 4.79
2606 2894 2.918712 AGAAAGCCATATCCTGACGG 57.081 50.000 0.00 0.00 0.00 4.79
2608 2896 5.698545 GTGTCATAGAAAGCCATATCCTGAC 59.301 44.000 0.00 0.00 33.07 3.51
2615 2903 4.202121 GGTCGAGTGTCATAGAAAGCCATA 60.202 45.833 0.00 0.00 0.00 2.74
2616 2904 3.430929 GGTCGAGTGTCATAGAAAGCCAT 60.431 47.826 0.00 0.00 0.00 4.40
2618 2906 2.094182 TGGTCGAGTGTCATAGAAAGCC 60.094 50.000 0.00 0.00 0.00 4.35
2619 2907 2.924290 GTGGTCGAGTGTCATAGAAAGC 59.076 50.000 0.00 0.00 0.00 3.51
2620 2908 3.921021 GTGTGGTCGAGTGTCATAGAAAG 59.079 47.826 0.00 0.00 0.00 2.62
2621 2909 3.319689 TGTGTGGTCGAGTGTCATAGAAA 59.680 43.478 0.00 0.00 0.00 2.52
2623 2911 2.510613 TGTGTGGTCGAGTGTCATAGA 58.489 47.619 0.00 0.00 0.00 1.98
2624 2912 3.297830 TTGTGTGGTCGAGTGTCATAG 57.702 47.619 0.00 0.00 0.00 2.23
2625 2913 3.257127 TGATTGTGTGGTCGAGTGTCATA 59.743 43.478 0.00 0.00 0.00 2.15
2663 2958 3.247442 GTGCGGTTAAAGTTTTATGGGC 58.753 45.455 0.00 0.00 0.00 5.36
2664 2959 3.256136 TGGTGCGGTTAAAGTTTTATGGG 59.744 43.478 0.00 0.00 0.00 4.00
2665 2960 4.506886 TGGTGCGGTTAAAGTTTTATGG 57.493 40.909 0.00 0.00 0.00 2.74
2666 2961 5.525199 AGTTGGTGCGGTTAAAGTTTTATG 58.475 37.500 0.00 0.00 0.00 1.90
2667 2962 5.777850 AGTTGGTGCGGTTAAAGTTTTAT 57.222 34.783 0.00 0.00 0.00 1.40
2668 2963 5.105837 ACAAGTTGGTGCGGTTAAAGTTTTA 60.106 36.000 7.96 0.00 0.00 1.52
2669 2964 4.177783 CAAGTTGGTGCGGTTAAAGTTTT 58.822 39.130 0.00 0.00 0.00 2.43
2670 2965 3.193903 ACAAGTTGGTGCGGTTAAAGTTT 59.806 39.130 7.96 0.00 0.00 2.66
2671 2966 2.756207 ACAAGTTGGTGCGGTTAAAGTT 59.244 40.909 7.96 0.00 0.00 2.66
2672 2967 2.356695 GACAAGTTGGTGCGGTTAAAGT 59.643 45.455 7.96 0.00 0.00 2.66
2673 2968 2.616842 AGACAAGTTGGTGCGGTTAAAG 59.383 45.455 7.96 0.00 0.00 1.85
2674 2969 2.645802 AGACAAGTTGGTGCGGTTAAA 58.354 42.857 7.96 0.00 0.00 1.52
2675 2970 2.335316 AGACAAGTTGGTGCGGTTAA 57.665 45.000 7.96 0.00 0.00 2.01
2676 2971 2.366266 ACTAGACAAGTTGGTGCGGTTA 59.634 45.455 7.96 0.00 33.35 2.85
2677 2972 1.140252 ACTAGACAAGTTGGTGCGGTT 59.860 47.619 7.96 0.00 33.35 4.44
2678 2973 0.756903 ACTAGACAAGTTGGTGCGGT 59.243 50.000 7.96 0.00 33.35 5.68
2679 2974 2.230508 TCTACTAGACAAGTTGGTGCGG 59.769 50.000 7.96 0.00 39.80 5.69
2680 2975 3.570926 TCTACTAGACAAGTTGGTGCG 57.429 47.619 7.96 0.00 39.80 5.34
2681 2976 4.884247 AGTTCTACTAGACAAGTTGGTGC 58.116 43.478 7.96 0.00 39.80 5.01
2697 2992 2.384828 TGGCCATAAGCTCGAGTTCTA 58.615 47.619 15.13 3.60 43.05 2.10
2698 2993 1.195115 TGGCCATAAGCTCGAGTTCT 58.805 50.000 15.13 0.00 43.05 3.01
2699 2994 1.869767 CATGGCCATAAGCTCGAGTTC 59.130 52.381 20.30 0.00 43.05 3.01
2720 3019 1.480954 ACGACGATCCTGCCATAAGTT 59.519 47.619 0.00 0.00 0.00 2.66
2723 3022 1.611977 CCTACGACGATCCTGCCATAA 59.388 52.381 0.00 0.00 0.00 1.90
2736 3035 6.018343 GGTACTAAGATACAGTGTCCTACGAC 60.018 46.154 0.00 0.00 39.66 4.34
2754 3053 2.561569 GCCTACGAGTACCGGTACTAA 58.438 52.381 40.15 27.96 45.63 2.24
2757 3056 1.643832 CGCCTACGAGTACCGGTAC 59.356 63.158 33.16 33.16 43.93 3.34
2802 3101 2.125512 CGTTCTTCTCGGGCCCTG 60.126 66.667 22.43 14.01 0.00 4.45
2803 3102 4.083862 GCGTTCTTCTCGGGCCCT 62.084 66.667 22.43 0.00 0.00 5.19
2811 3110 2.048127 GGTCTGCGGCGTTCTTCT 60.048 61.111 9.37 0.00 0.00 2.85
2846 3145 2.355010 AAAGATGTAGGAGCCATGGC 57.645 50.000 30.12 30.12 42.33 4.40
2912 3211 2.625737 CTATTGGCCGGCTATCATCAG 58.374 52.381 28.56 11.61 0.00 2.90
3028 3328 1.216178 GCCAATGTGCCATGGTGAC 59.784 57.895 14.67 11.17 39.00 3.67
3029 3329 0.615261 ATGCCAATGTGCCATGGTGA 60.615 50.000 14.67 0.00 39.00 4.02
3030 3330 0.179094 GATGCCAATGTGCCATGGTG 60.179 55.000 14.67 2.67 39.00 4.17
3031 3331 1.332144 GGATGCCAATGTGCCATGGT 61.332 55.000 14.67 0.00 39.00 3.55
3032 3332 1.444250 GGATGCCAATGTGCCATGG 59.556 57.895 7.63 7.63 39.80 3.66
3035 3335 0.261109 TATGGGATGCCAATGTGCCA 59.739 50.000 11.10 0.00 40.24 4.92
3036 3336 1.412079 TTATGGGATGCCAATGTGCC 58.588 50.000 11.10 0.00 0.00 5.01
3037 3337 3.540314 TTTTATGGGATGCCAATGTGC 57.460 42.857 11.10 0.00 0.00 4.57
3150 3460 1.616159 ACTTTACCACAAAGGCGCAT 58.384 45.000 10.83 0.00 43.14 4.73
3220 3530 0.776810 TCAGCCAAGAACATTCCCCA 59.223 50.000 0.00 0.00 0.00 4.96
3249 3563 5.300752 CATCCTTATCTAGAAACCGCATGT 58.699 41.667 0.00 0.00 0.00 3.21
3281 3595 0.389426 AATCGACGGCTAAACGCACT 60.389 50.000 0.00 0.00 41.67 4.40
3359 3673 2.365293 CTCACCCCCAACAAAAAGAAGG 59.635 50.000 0.00 0.00 0.00 3.46
3360 3674 2.365293 CCTCACCCCCAACAAAAAGAAG 59.635 50.000 0.00 0.00 0.00 2.85
3361 3675 2.292587 ACCTCACCCCCAACAAAAAGAA 60.293 45.455 0.00 0.00 0.00 2.52
3363 3677 1.412343 CACCTCACCCCCAACAAAAAG 59.588 52.381 0.00 0.00 0.00 2.27
3370 3684 0.698238 CATTCTCACCTCACCCCCAA 59.302 55.000 0.00 0.00 0.00 4.12
3476 3792 8.342634 AGAACACAACCGCATAAATATCATTAC 58.657 33.333 0.00 0.00 0.00 1.89
3486 3806 3.215151 TCCAAAGAACACAACCGCATAA 58.785 40.909 0.00 0.00 0.00 1.90
3492 3812 1.068541 GGCGATCCAAAGAACACAACC 60.069 52.381 0.00 0.00 0.00 3.77
3505 3825 0.822121 ATAAAAAGGGCGGGCGATCC 60.822 55.000 0.00 0.00 0.00 3.36
3566 3886 0.249398 ACTTCCACCACTGGCGATAC 59.751 55.000 0.00 0.00 37.49 2.24
3632 3952 5.203528 AGGCCCGTGTACTAAAGTTCTATA 58.796 41.667 0.00 0.00 0.00 1.31
3633 3953 4.028825 AGGCCCGTGTACTAAAGTTCTAT 58.971 43.478 0.00 0.00 0.00 1.98
3726 4046 2.369394 CACCTAAGTGGAAGCCCATTC 58.631 52.381 0.00 0.00 45.68 2.67
3727 4047 2.514458 CACCTAAGTGGAAGCCCATT 57.486 50.000 0.00 0.00 45.68 3.16
3737 4057 0.625849 AGATTGGGCCCACCTAAGTG 59.374 55.000 28.70 0.00 40.15 3.16
3739 4059 2.127708 AGTAGATTGGGCCCACCTAAG 58.872 52.381 28.70 0.00 40.15 2.18
3740 4060 2.241176 CAAGTAGATTGGGCCCACCTAA 59.759 50.000 28.70 11.05 41.21 2.69
3741 4061 1.843851 CAAGTAGATTGGGCCCACCTA 59.156 52.381 28.70 25.01 41.11 3.08
3743 4063 1.037579 GCAAGTAGATTGGGCCCACC 61.038 60.000 28.70 20.06 39.47 4.61
3744 4064 0.034089 AGCAAGTAGATTGGGCCCAC 60.034 55.000 28.70 15.32 39.47 4.61
3745 4065 1.490490 CTAGCAAGTAGATTGGGCCCA 59.510 52.381 24.45 24.45 39.47 5.36
3788 4115 6.539649 TTTTTGAACATCTCCTACTTCACG 57.460 37.500 0.00 0.00 0.00 4.35
3814 4141 7.881751 CCACCCCCGGTTTTATTTTTATTTTTA 59.118 33.333 0.00 0.00 31.02 1.52
3815 4142 6.715718 CCACCCCCGGTTTTATTTTTATTTTT 59.284 34.615 0.00 0.00 31.02 1.94
3820 4147 3.171528 CCCACCCCCGGTTTTATTTTTA 58.828 45.455 0.00 0.00 31.02 1.52
3822 4149 1.646912 CCCACCCCCGGTTTTATTTT 58.353 50.000 0.00 0.00 31.02 1.82
3823 4150 0.252330 CCCCACCCCCGGTTTTATTT 60.252 55.000 0.00 0.00 31.02 1.40
3824 4151 1.147837 TCCCCACCCCCGGTTTTATT 61.148 55.000 0.00 0.00 31.02 1.40
3825 4152 1.544406 TCCCCACCCCCGGTTTTAT 60.544 57.895 0.00 0.00 31.02 1.40
3826 4153 2.121598 TCCCCACCCCCGGTTTTA 60.122 61.111 0.00 0.00 31.02 1.52
3827 4154 3.586454 CTCCCCACCCCCGGTTTT 61.586 66.667 0.00 0.00 31.02 2.43
3828 4155 3.503863 TACTCCCCACCCCCGGTTT 62.504 63.158 0.00 0.00 31.02 3.27
3829 4156 3.937372 CTACTCCCCACCCCCGGTT 62.937 68.421 0.00 0.00 31.02 4.44
3830 4157 4.410033 CTACTCCCCACCCCCGGT 62.410 72.222 0.00 0.00 35.62 5.28
3833 4160 4.752594 TGGCTACTCCCCACCCCC 62.753 72.222 0.00 0.00 0.00 5.40
3834 4161 2.540842 TACTGGCTACTCCCCACCCC 62.541 65.000 0.00 0.00 0.00 4.95
3835 4162 1.002533 TACTGGCTACTCCCCACCC 59.997 63.158 0.00 0.00 0.00 4.61
3836 4163 1.049289 CCTACTGGCTACTCCCCACC 61.049 65.000 0.00 0.00 0.00 4.61
3837 4164 0.032416 TCCTACTGGCTACTCCCCAC 60.032 60.000 0.00 0.00 0.00 4.61
3838 4165 0.261991 CTCCTACTGGCTACTCCCCA 59.738 60.000 0.00 0.00 0.00 4.96
3839 4166 0.556747 TCTCCTACTGGCTACTCCCC 59.443 60.000 0.00 0.00 0.00 4.81
3840 4167 2.158445 TCATCTCCTACTGGCTACTCCC 60.158 54.545 0.00 0.00 0.00 4.30
3841 4168 3.231207 TCATCTCCTACTGGCTACTCC 57.769 52.381 0.00 0.00 0.00 3.85
3842 4169 4.217550 GTCATCATCTCCTACTGGCTACTC 59.782 50.000 0.00 0.00 0.00 2.59
3843 4170 4.148838 GTCATCATCTCCTACTGGCTACT 58.851 47.826 0.00 0.00 0.00 2.57
3844 4171 3.891977 TGTCATCATCTCCTACTGGCTAC 59.108 47.826 0.00 0.00 0.00 3.58
3878 4205 2.165319 ACAAACAGGAGTACGCCTTC 57.835 50.000 16.39 0.00 35.66 3.46
3881 4208 2.165319 AGAACAAACAGGAGTACGCC 57.835 50.000 7.70 7.70 0.00 5.68
3883 4210 5.770417 AGAACTAGAACAAACAGGAGTACG 58.230 41.667 0.00 0.00 0.00 3.67
3943 4285 5.421277 TCTTTGAACGGTTAACAGAGTGAA 58.579 37.500 12.91 0.00 0.00 3.18
3954 4296 5.414765 AGAGTGACTTTTTCTTTGAACGGTT 59.585 36.000 0.00 0.00 0.00 4.44
3955 4297 4.941873 AGAGTGACTTTTTCTTTGAACGGT 59.058 37.500 0.00 0.00 0.00 4.83
3977 4319 8.644619 CACTCATTTCATGATTTTTAGCAACAG 58.355 33.333 0.00 0.00 38.85 3.16
4011 4355 9.274206 GTGTATACTTGTTCTCTTTCTCCTTTT 57.726 33.333 4.17 0.00 0.00 2.27
4023 4367 4.451096 CGGCTTGTTGTGTATACTTGTTCT 59.549 41.667 4.17 0.00 0.00 3.01
4045 4389 3.458189 GGAATAATGACACCTCACCTCG 58.542 50.000 0.00 0.00 0.00 4.63
4046 4390 3.456277 AGGGAATAATGACACCTCACCTC 59.544 47.826 0.00 0.00 0.00 3.85
4047 4391 3.464828 AGGGAATAATGACACCTCACCT 58.535 45.455 0.00 0.00 0.00 4.00
4048 4392 3.933861 AGGGAATAATGACACCTCACC 57.066 47.619 0.00 0.00 0.00 4.02
4049 4393 7.696992 TTTTAAGGGAATAATGACACCTCAC 57.303 36.000 0.00 0.00 0.00 3.51
4101 4445 3.565307 TGGAATGACACCTCAGCTTTTT 58.435 40.909 0.00 0.00 0.00 1.94
4102 4446 3.228188 TGGAATGACACCTCAGCTTTT 57.772 42.857 0.00 0.00 0.00 2.27
4103 4447 2.957402 TGGAATGACACCTCAGCTTT 57.043 45.000 0.00 0.00 0.00 3.51
4104 4448 3.350833 GAATGGAATGACACCTCAGCTT 58.649 45.455 0.00 0.00 0.00 3.74
4105 4449 2.679059 CGAATGGAATGACACCTCAGCT 60.679 50.000 0.00 0.00 0.00 4.24
4106 4450 1.667724 CGAATGGAATGACACCTCAGC 59.332 52.381 0.00 0.00 0.00 4.26
4107 4451 1.667724 GCGAATGGAATGACACCTCAG 59.332 52.381 0.00 0.00 0.00 3.35
4108 4452 1.003003 TGCGAATGGAATGACACCTCA 59.997 47.619 0.00 0.00 0.00 3.86
4109 4453 1.398390 GTGCGAATGGAATGACACCTC 59.602 52.381 0.00 0.00 0.00 3.85
4110 4454 1.453155 GTGCGAATGGAATGACACCT 58.547 50.000 0.00 0.00 0.00 4.00
4111 4455 0.096976 CGTGCGAATGGAATGACACC 59.903 55.000 0.00 0.00 0.00 4.16
4112 4456 1.061131 CTCGTGCGAATGGAATGACAC 59.939 52.381 0.00 0.00 0.00 3.67
4113 4457 1.337728 ACTCGTGCGAATGGAATGACA 60.338 47.619 0.00 0.00 0.00 3.58
4114 4458 1.061131 CACTCGTGCGAATGGAATGAC 59.939 52.381 0.00 0.00 0.00 3.06
4115 4459 1.358877 CACTCGTGCGAATGGAATGA 58.641 50.000 0.00 0.00 0.00 2.57
4116 4460 0.374758 CCACTCGTGCGAATGGAATG 59.625 55.000 15.83 0.00 43.49 2.67
4117 4461 1.369091 GCCACTCGTGCGAATGGAAT 61.369 55.000 23.51 0.00 43.49 3.01
4118 4462 2.032634 GCCACTCGTGCGAATGGAA 61.033 57.895 23.51 0.00 43.49 3.53
4145 4489 4.392940 GTGGGGAGATGAAAGATATGTGG 58.607 47.826 0.00 0.00 0.00 4.17
4156 4500 0.837272 GGGAATTCGTGGGGAGATGA 59.163 55.000 0.00 0.00 0.00 2.92
4157 4501 0.546122 TGGGAATTCGTGGGGAGATG 59.454 55.000 0.00 0.00 0.00 2.90
4158 4502 1.212935 CTTGGGAATTCGTGGGGAGAT 59.787 52.381 0.00 0.00 0.00 2.75
4159 4503 0.618458 CTTGGGAATTCGTGGGGAGA 59.382 55.000 0.00 0.00 0.00 3.71
4160 4504 0.394352 CCTTGGGAATTCGTGGGGAG 60.394 60.000 0.00 0.00 0.00 4.30
4161 4505 1.137594 ACCTTGGGAATTCGTGGGGA 61.138 55.000 11.34 0.00 0.00 4.81
4162 4506 0.965363 CACCTTGGGAATTCGTGGGG 60.965 60.000 0.00 2.37 0.00 4.96
4163 4507 0.251165 ACACCTTGGGAATTCGTGGG 60.251 55.000 12.95 8.80 0.00 4.61
4164 4508 2.027561 TCTACACCTTGGGAATTCGTGG 60.028 50.000 12.95 8.54 0.00 4.94
4165 4509 3.328382 TCTACACCTTGGGAATTCGTG 57.672 47.619 8.37 8.37 0.00 4.35
4166 4510 3.581332 TCTTCTACACCTTGGGAATTCGT 59.419 43.478 0.00 0.00 0.00 3.85
4167 4511 4.202245 TCTTCTACACCTTGGGAATTCG 57.798 45.455 0.00 0.00 0.00 3.34
4168 4512 4.396478 GCTTCTTCTACACCTTGGGAATTC 59.604 45.833 0.00 0.00 0.00 2.17
4169 4513 4.336280 GCTTCTTCTACACCTTGGGAATT 58.664 43.478 0.00 0.00 0.00 2.17
4170 4514 3.308473 GGCTTCTTCTACACCTTGGGAAT 60.308 47.826 0.00 0.00 0.00 3.01
4171 4515 2.039879 GGCTTCTTCTACACCTTGGGAA 59.960 50.000 0.00 0.00 0.00 3.97
4172 4516 1.628846 GGCTTCTTCTACACCTTGGGA 59.371 52.381 0.00 0.00 0.00 4.37
4173 4517 1.351017 TGGCTTCTTCTACACCTTGGG 59.649 52.381 0.00 0.00 0.00 4.12
4174 4518 2.704572 CTGGCTTCTTCTACACCTTGG 58.295 52.381 0.00 0.00 0.00 3.61
4175 4519 2.079925 GCTGGCTTCTTCTACACCTTG 58.920 52.381 0.00 0.00 0.00 3.61
4176 4520 1.699634 TGCTGGCTTCTTCTACACCTT 59.300 47.619 0.00 0.00 0.00 3.50
4177 4521 1.352083 TGCTGGCTTCTTCTACACCT 58.648 50.000 0.00 0.00 0.00 4.00
4178 4522 2.409948 ATGCTGGCTTCTTCTACACC 57.590 50.000 0.00 0.00 0.00 4.16
4179 4523 2.869192 GCTATGCTGGCTTCTTCTACAC 59.131 50.000 0.00 0.00 0.00 2.90
4180 4524 2.501316 TGCTATGCTGGCTTCTTCTACA 59.499 45.455 0.00 0.00 0.00 2.74
4181 4525 3.185246 TGCTATGCTGGCTTCTTCTAC 57.815 47.619 0.00 0.00 0.00 2.59
4182 4526 4.562347 GCTATGCTATGCTGGCTTCTTCTA 60.562 45.833 0.00 0.00 0.00 2.10
4349 5005 0.806102 CCTGCACGTCCTTGTATCCG 60.806 60.000 0.00 0.00 0.00 4.18
4522 5178 1.600916 AAACCGAGCTGCCTGTTCC 60.601 57.895 0.00 0.00 0.00 3.62
4523 5179 1.576421 CAAACCGAGCTGCCTGTTC 59.424 57.895 0.00 0.00 0.00 3.18
4524 5180 1.898574 CCAAACCGAGCTGCCTGTT 60.899 57.895 0.00 0.00 0.00 3.16
4525 5181 2.281761 CCAAACCGAGCTGCCTGT 60.282 61.111 0.00 0.00 0.00 4.00
4526 5182 2.281761 ACCAAACCGAGCTGCCTG 60.282 61.111 0.00 0.00 0.00 4.85
4527 5183 2.281761 CACCAAACCGAGCTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
4528 5184 3.365265 CCACCAAACCGAGCTGCC 61.365 66.667 0.00 0.00 0.00 4.85
4636 5292 3.179925 TGGCATCAGGCATTGAGTC 57.820 52.632 0.00 0.00 46.46 3.36
4694 5359 2.171341 AACTGAAACCCTCGCTCTTC 57.829 50.000 0.00 0.00 0.00 2.87
4705 5370 0.110644 CGCGCTCTGGAAACTGAAAC 60.111 55.000 5.56 0.00 37.88 2.78
4883 5692 3.814842 TGTTGAATAGCAGGTGACAACTG 59.185 43.478 16.53 16.53 38.51 3.16
5079 5890 6.183360 CGGTTTTCTGTTAAGTGTCAACTTCT 60.183 38.462 0.00 0.00 43.34 2.85
5119 5930 1.418342 CCATAACGTGTCGCTTCCCG 61.418 60.000 0.00 0.00 38.61 5.14
5168 5979 2.362397 AGACGTCGATGGATAATGCAGT 59.638 45.455 10.46 0.00 0.00 4.40
5269 6080 5.239306 TGTTTAGTCATGGCTGAACAGAAAG 59.761 40.000 27.94 0.00 39.15 2.62
5319 6130 4.492791 TCGTCTTGTCGAATGTCAACTA 57.507 40.909 0.00 0.00 36.89 2.24
5320 6131 3.364889 TCGTCTTGTCGAATGTCAACT 57.635 42.857 0.00 0.00 36.89 3.16
5356 6167 3.110447 TGGAAATTTTGGAAGCTGCAC 57.890 42.857 1.02 0.00 0.00 4.57
5360 6171 6.413892 TCAGTTTTTGGAAATTTTGGAAGCT 58.586 32.000 0.00 0.00 0.00 3.74
5361 6172 6.538381 TCTCAGTTTTTGGAAATTTTGGAAGC 59.462 34.615 0.00 0.00 0.00 3.86
5391 7750 6.725369 AGAAGGATGTAGATATGCACTGATCT 59.275 38.462 11.25 11.25 36.40 2.75
5394 7753 5.600069 ACAGAAGGATGTAGATATGCACTGA 59.400 40.000 0.00 0.00 33.33 3.41
5398 7757 8.704668 TCTTTAACAGAAGGATGTAGATATGCA 58.295 33.333 0.00 0.00 31.70 3.96
5399 7758 8.983724 GTCTTTAACAGAAGGATGTAGATATGC 58.016 37.037 0.00 0.00 31.28 3.14
5403 7762 9.965902 ATTTGTCTTTAACAGAAGGATGTAGAT 57.034 29.630 0.00 0.00 39.58 1.98
5407 7766 7.004086 TCCATTTGTCTTTAACAGAAGGATGT 58.996 34.615 0.00 0.00 35.58 3.06
5408 7767 7.452880 TCCATTTGTCTTTAACAGAAGGATG 57.547 36.000 0.00 0.00 35.58 3.51
5472 7831 5.449304 CGATGGTGTTTAGAAAAGGTTGAC 58.551 41.667 0.00 0.00 0.00 3.18
5476 7835 2.482721 CGCGATGGTGTTTAGAAAAGGT 59.517 45.455 0.00 0.00 0.00 3.50
5477 7836 2.482721 ACGCGATGGTGTTTAGAAAAGG 59.517 45.455 15.93 0.00 31.47 3.11
5478 7837 3.479006 CACGCGATGGTGTTTAGAAAAG 58.521 45.455 15.93 0.00 33.82 2.27
5479 7838 3.529634 CACGCGATGGTGTTTAGAAAA 57.470 42.857 15.93 0.00 33.82 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.