Multiple sequence alignment - TraesCS2D01G432000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G432000 chr2D 100.000 2023 0 0 1 2023 544567528 544565506 0.000000e+00 3736
1 TraesCS2D01G432000 chr2D 89.557 1015 73 14 713 1713 544465233 544464238 0.000000e+00 1256
2 TraesCS2D01G432000 chr2D 87.500 896 85 15 956 1838 544327145 544326264 0.000000e+00 1009
3 TraesCS2D01G432000 chr2D 100.000 499 0 0 2300 2798 544565229 544564731 0.000000e+00 922
4 TraesCS2D01G432000 chr2D 82.330 515 58 14 715 1215 544496766 544496271 1.550000e-112 416
5 TraesCS2D01G432000 chr2A 95.221 1423 52 6 484 1900 686812987 686811575 0.000000e+00 2237
6 TraesCS2D01G432000 chr2A 89.136 1215 98 23 710 1900 686808032 686806828 0.000000e+00 1482
7 TraesCS2D01G432000 chr2A 93.880 866 46 2 1024 1889 686805687 686804829 0.000000e+00 1299
8 TraesCS2D01G432000 chr2A 87.544 1124 95 24 755 1846 686802247 686801137 0.000000e+00 1258
9 TraesCS2D01G432000 chr2A 90.323 496 41 5 2306 2798 686811369 686810878 0.000000e+00 643
10 TraesCS2D01G432000 chr2A 90.121 496 42 5 2306 2798 686806268 686805777 3.040000e-179 638
11 TraesCS2D01G432000 chr2A 91.667 240 17 2 2306 2545 686808315 686808079 2.080000e-86 329
12 TraesCS2D01G432000 chr2A 93.365 211 9 3 282 487 686813289 686813079 9.740000e-80 307
13 TraesCS2D01G432000 chr2B 93.353 1384 68 7 517 1895 649947679 649946315 0.000000e+00 2025
14 TraesCS2D01G432000 chr2B 89.404 1208 81 23 713 1895 649750605 649749420 0.000000e+00 1478
15 TraesCS2D01G432000 chr2B 89.091 1210 82 23 713 1895 649756494 649755308 0.000000e+00 1458
16 TraesCS2D01G432000 chr2B 89.534 1051 68 20 743 1770 649714418 649713387 0.000000e+00 1293
17 TraesCS2D01G432000 chr2B 86.045 1168 116 26 713 1857 649708614 649707471 0.000000e+00 1210
18 TraesCS2D01G432000 chr2B 91.457 199 11 4 295 487 649950476 649950278 4.590000e-68 268
19 TraesCS2D01G432000 chr2B 91.912 136 9 1 127 260 674727351 674727486 3.680000e-44 189
20 TraesCS2D01G432000 chr2B 88.816 152 10 3 130 276 747832509 747832658 2.210000e-41 180
21 TraesCS2D01G432000 chr2B 96.774 62 2 0 1834 1895 649713375 649713314 1.370000e-18 104
22 TraesCS2D01G432000 chr1B 91.391 151 9 1 130 276 640553607 640553757 1.310000e-48 204
23 TraesCS2D01G432000 chr7B 89.308 159 10 4 130 284 496336588 496336433 2.840000e-45 193
24 TraesCS2D01G432000 chr1D 88.535 157 13 2 130 282 436324490 436324335 4.760000e-43 185
25 TraesCS2D01G432000 chr5B 87.742 155 15 1 126 276 666326457 666326303 7.960000e-41 178
26 TraesCS2D01G432000 chr6B 86.792 159 16 2 130 284 705761450 705761293 3.710000e-39 172
27 TraesCS2D01G432000 chr7D 87.097 155 15 2 130 280 159440446 159440293 1.330000e-38 171
28 TraesCS2D01G432000 chr3A 87.248 149 15 3 131 276 107051506 107051359 1.720000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G432000 chr2D 544564731 544567528 2797 True 2329.000 3736 100.000000 1 2798 2 chr2D.!!$R4 2797
1 TraesCS2D01G432000 chr2D 544464238 544465233 995 True 1256.000 1256 89.557000 713 1713 1 chr2D.!!$R2 1000
2 TraesCS2D01G432000 chr2D 544326264 544327145 881 True 1009.000 1009 87.500000 956 1838 1 chr2D.!!$R1 882
3 TraesCS2D01G432000 chr2A 686801137 686813289 12152 True 1024.125 2237 91.407125 282 2798 8 chr2A.!!$R1 2516
4 TraesCS2D01G432000 chr2B 649749420 649750605 1185 True 1478.000 1478 89.404000 713 1895 1 chr2B.!!$R2 1182
5 TraesCS2D01G432000 chr2B 649755308 649756494 1186 True 1458.000 1458 89.091000 713 1895 1 chr2B.!!$R3 1182
6 TraesCS2D01G432000 chr2B 649707471 649708614 1143 True 1210.000 1210 86.045000 713 1857 1 chr2B.!!$R1 1144
7 TraesCS2D01G432000 chr2B 649946315 649950476 4161 True 1146.500 2025 92.405000 295 1895 2 chr2B.!!$R5 1600
8 TraesCS2D01G432000 chr2B 649713314 649714418 1104 True 698.500 1293 93.154000 743 1895 2 chr2B.!!$R4 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.033504 ATCGGCTACGTAATGGCAGG 59.966 55.0 7.49 0.0 41.85 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 9387 0.037605 GTTAGTGGTGACCCTGACCG 60.038 60.0 0.0 0.0 36.12 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.580904 GATCGGCTACGTAATGGCA 57.419 52.632 7.49 0.00 41.85 4.92
19 20 1.419374 GATCGGCTACGTAATGGCAG 58.581 55.000 7.49 3.79 41.85 4.85
20 21 0.033504 ATCGGCTACGTAATGGCAGG 59.966 55.000 7.49 0.00 41.85 4.85
21 22 1.143183 CGGCTACGTAATGGCAGGT 59.857 57.895 7.49 0.00 36.24 4.00
22 23 0.461339 CGGCTACGTAATGGCAGGTT 60.461 55.000 7.49 0.00 36.24 3.50
23 24 1.202440 CGGCTACGTAATGGCAGGTTA 60.202 52.381 7.49 0.00 36.24 2.85
24 25 2.480845 GGCTACGTAATGGCAGGTTAG 58.519 52.381 7.49 0.00 36.24 2.34
25 26 1.865340 GCTACGTAATGGCAGGTTAGC 59.135 52.381 0.00 0.00 34.21 3.09
26 27 2.483188 GCTACGTAATGGCAGGTTAGCT 60.483 50.000 0.00 0.00 34.21 3.32
27 28 2.781681 ACGTAATGGCAGGTTAGCTT 57.218 45.000 0.00 0.00 34.17 3.74
28 29 3.067684 ACGTAATGGCAGGTTAGCTTT 57.932 42.857 0.00 0.00 34.17 3.51
29 30 4.210724 ACGTAATGGCAGGTTAGCTTTA 57.789 40.909 0.00 0.00 34.17 1.85
30 31 4.581868 ACGTAATGGCAGGTTAGCTTTAA 58.418 39.130 0.00 0.00 34.17 1.52
31 32 5.190677 ACGTAATGGCAGGTTAGCTTTAAT 58.809 37.500 0.00 0.00 34.17 1.40
32 33 5.650703 ACGTAATGGCAGGTTAGCTTTAATT 59.349 36.000 0.00 0.00 34.17 1.40
33 34 6.152154 ACGTAATGGCAGGTTAGCTTTAATTT 59.848 34.615 0.00 0.00 34.17 1.82
34 35 7.337436 ACGTAATGGCAGGTTAGCTTTAATTTA 59.663 33.333 0.00 0.00 34.17 1.40
35 36 7.642586 CGTAATGGCAGGTTAGCTTTAATTTAC 59.357 37.037 0.00 0.00 34.17 2.01
36 37 7.718334 AATGGCAGGTTAGCTTTAATTTACT 57.282 32.000 0.00 0.00 34.17 2.24
37 38 6.509418 TGGCAGGTTAGCTTTAATTTACTG 57.491 37.500 0.00 0.00 34.17 2.74
38 39 6.242396 TGGCAGGTTAGCTTTAATTTACTGA 58.758 36.000 0.00 0.00 34.17 3.41
39 40 6.717540 TGGCAGGTTAGCTTTAATTTACTGAA 59.282 34.615 0.00 0.00 34.17 3.02
40 41 7.094377 TGGCAGGTTAGCTTTAATTTACTGAAG 60.094 37.037 0.00 0.00 34.17 3.02
41 42 7.120726 GGCAGGTTAGCTTTAATTTACTGAAGA 59.879 37.037 0.00 0.00 34.17 2.87
42 43 8.512138 GCAGGTTAGCTTTAATTTACTGAAGAA 58.488 33.333 0.00 0.00 0.00 2.52
56 57 7.797038 TTACTGAAGAAAAACACTTACTCCC 57.203 36.000 0.00 0.00 0.00 4.30
57 58 6.002653 ACTGAAGAAAAACACTTACTCCCT 57.997 37.500 0.00 0.00 0.00 4.20
58 59 6.056236 ACTGAAGAAAAACACTTACTCCCTC 58.944 40.000 0.00 0.00 0.00 4.30
59 60 6.126739 ACTGAAGAAAAACACTTACTCCCTCT 60.127 38.462 0.00 0.00 0.00 3.69
60 61 6.289064 TGAAGAAAAACACTTACTCCCTCTC 58.711 40.000 0.00 0.00 0.00 3.20
61 62 5.230323 AGAAAAACACTTACTCCCTCTCC 57.770 43.478 0.00 0.00 0.00 3.71
62 63 4.658901 AGAAAAACACTTACTCCCTCTCCA 59.341 41.667 0.00 0.00 0.00 3.86
63 64 5.310857 AGAAAAACACTTACTCCCTCTCCAT 59.689 40.000 0.00 0.00 0.00 3.41
64 65 4.828072 AAACACTTACTCCCTCTCCATC 57.172 45.455 0.00 0.00 0.00 3.51
65 66 3.767309 ACACTTACTCCCTCTCCATCT 57.233 47.619 0.00 0.00 0.00 2.90
66 67 3.370104 ACACTTACTCCCTCTCCATCTG 58.630 50.000 0.00 0.00 0.00 2.90
67 68 3.245803 ACACTTACTCCCTCTCCATCTGT 60.246 47.826 0.00 0.00 0.00 3.41
68 69 4.017407 ACACTTACTCCCTCTCCATCTGTA 60.017 45.833 0.00 0.00 0.00 2.74
69 70 4.956700 CACTTACTCCCTCTCCATCTGTAA 59.043 45.833 0.00 0.00 0.00 2.41
70 71 5.422331 CACTTACTCCCTCTCCATCTGTAAA 59.578 44.000 0.00 0.00 0.00 2.01
71 72 5.659079 ACTTACTCCCTCTCCATCTGTAAAG 59.341 44.000 0.00 0.00 0.00 1.85
72 73 4.338795 ACTCCCTCTCCATCTGTAAAGA 57.661 45.455 0.00 0.00 0.00 2.52
73 74 4.689062 ACTCCCTCTCCATCTGTAAAGAA 58.311 43.478 0.00 0.00 0.00 2.52
74 75 5.094387 ACTCCCTCTCCATCTGTAAAGAAA 58.906 41.667 0.00 0.00 0.00 2.52
75 76 5.728741 ACTCCCTCTCCATCTGTAAAGAAAT 59.271 40.000 0.00 0.00 0.00 2.17
76 77 6.903534 ACTCCCTCTCCATCTGTAAAGAAATA 59.096 38.462 0.00 0.00 0.00 1.40
77 78 7.070571 ACTCCCTCTCCATCTGTAAAGAAATAG 59.929 40.741 0.00 0.00 0.00 1.73
78 79 6.903534 TCCCTCTCCATCTGTAAAGAAATAGT 59.096 38.462 0.00 0.00 0.00 2.12
79 80 6.989169 CCCTCTCCATCTGTAAAGAAATAGTG 59.011 42.308 0.00 0.00 0.00 2.74
80 81 7.147655 CCCTCTCCATCTGTAAAGAAATAGTGA 60.148 40.741 0.00 0.00 0.00 3.41
81 82 8.428063 CCTCTCCATCTGTAAAGAAATAGTGAT 58.572 37.037 0.00 0.00 0.00 3.06
82 83 9.474920 CTCTCCATCTGTAAAGAAATAGTGATC 57.525 37.037 0.00 0.00 0.00 2.92
83 84 9.206690 TCTCCATCTGTAAAGAAATAGTGATCT 57.793 33.333 0.00 0.00 0.00 2.75
90 91 9.690434 CTGTAAAGAAATAGTGATCTAAAACGC 57.310 33.333 0.00 0.00 0.00 4.84
91 92 9.431887 TGTAAAGAAATAGTGATCTAAAACGCT 57.568 29.630 0.00 0.00 0.00 5.07
92 93 9.903185 GTAAAGAAATAGTGATCTAAAACGCTC 57.097 33.333 0.00 0.00 0.00 5.03
93 94 8.779354 AAAGAAATAGTGATCTAAAACGCTCT 57.221 30.769 0.00 0.00 0.00 4.09
94 95 8.779354 AAGAAATAGTGATCTAAAACGCTCTT 57.221 30.769 0.00 0.00 0.00 2.85
95 96 9.871238 AAGAAATAGTGATCTAAAACGCTCTTA 57.129 29.630 0.00 0.00 0.00 2.10
102 103 9.073475 AGTGATCTAAAACGCTCTTATATCTCT 57.927 33.333 0.00 0.00 0.00 3.10
103 104 9.685828 GTGATCTAAAACGCTCTTATATCTCTT 57.314 33.333 0.00 0.00 0.00 2.85
135 136 9.918630 TTTACTTAGGGAATACTATATGCGTTC 57.081 33.333 0.00 0.00 0.00 3.95
136 137 7.778185 ACTTAGGGAATACTATATGCGTTCT 57.222 36.000 0.00 0.00 0.00 3.01
137 138 8.191534 ACTTAGGGAATACTATATGCGTTCTT 57.808 34.615 0.00 0.00 0.00 2.52
138 139 8.088981 ACTTAGGGAATACTATATGCGTTCTTG 58.911 37.037 0.00 0.00 0.00 3.02
139 140 6.420913 AGGGAATACTATATGCGTTCTTGT 57.579 37.500 0.00 0.00 0.00 3.16
140 141 6.223852 AGGGAATACTATATGCGTTCTTGTG 58.776 40.000 0.00 0.00 0.00 3.33
141 142 5.989777 GGGAATACTATATGCGTTCTTGTGT 59.010 40.000 0.00 0.00 0.00 3.72
142 143 6.073765 GGGAATACTATATGCGTTCTTGTGTG 60.074 42.308 0.00 0.00 0.00 3.82
143 144 6.073765 GGAATACTATATGCGTTCTTGTGTGG 60.074 42.308 0.00 0.00 0.00 4.17
144 145 3.531538 ACTATATGCGTTCTTGTGTGGG 58.468 45.455 0.00 0.00 0.00 4.61
145 146 2.489938 ATATGCGTTCTTGTGTGGGT 57.510 45.000 0.00 0.00 0.00 4.51
146 147 2.264005 TATGCGTTCTTGTGTGGGTT 57.736 45.000 0.00 0.00 0.00 4.11
147 148 0.667993 ATGCGTTCTTGTGTGGGTTG 59.332 50.000 0.00 0.00 0.00 3.77
148 149 1.299089 GCGTTCTTGTGTGGGTTGC 60.299 57.895 0.00 0.00 0.00 4.17
149 150 1.358759 CGTTCTTGTGTGGGTTGCC 59.641 57.895 0.00 0.00 0.00 4.52
150 151 1.380403 CGTTCTTGTGTGGGTTGCCA 61.380 55.000 0.00 0.00 0.00 4.92
151 152 0.385390 GTTCTTGTGTGGGTTGCCAG 59.615 55.000 0.00 0.00 0.00 4.85
152 153 0.754957 TTCTTGTGTGGGTTGCCAGG 60.755 55.000 0.00 0.00 0.00 4.45
153 154 1.455587 CTTGTGTGGGTTGCCAGGT 60.456 57.895 0.00 0.00 0.00 4.00
154 155 1.454847 TTGTGTGGGTTGCCAGGTC 60.455 57.895 0.00 0.00 0.00 3.85
155 156 2.978010 GTGTGGGTTGCCAGGTCG 60.978 66.667 0.00 0.00 0.00 4.79
156 157 3.484806 TGTGGGTTGCCAGGTCGT 61.485 61.111 0.00 0.00 0.00 4.34
157 158 2.668550 GTGGGTTGCCAGGTCGTC 60.669 66.667 0.00 0.00 0.00 4.20
158 159 3.948719 TGGGTTGCCAGGTCGTCC 61.949 66.667 0.00 0.00 0.00 4.79
159 160 3.637273 GGGTTGCCAGGTCGTCCT 61.637 66.667 0.00 0.00 46.37 3.85
167 168 2.524394 AGGTCGTCCTGTGTGCCT 60.524 61.111 0.00 0.00 43.33 4.75
168 169 2.140792 AGGTCGTCCTGTGTGCCTT 61.141 57.895 0.00 0.00 43.33 4.35
169 170 1.961277 GGTCGTCCTGTGTGCCTTG 60.961 63.158 0.00 0.00 0.00 3.61
170 171 1.227556 GTCGTCCTGTGTGCCTTGT 60.228 57.895 0.00 0.00 0.00 3.16
171 172 0.814010 GTCGTCCTGTGTGCCTTGTT 60.814 55.000 0.00 0.00 0.00 2.83
172 173 0.107410 TCGTCCTGTGTGCCTTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
173 174 0.738389 CGTCCTGTGTGCCTTGTTTT 59.262 50.000 0.00 0.00 0.00 2.43
174 175 1.134175 CGTCCTGTGTGCCTTGTTTTT 59.866 47.619 0.00 0.00 0.00 1.94
175 176 2.539476 GTCCTGTGTGCCTTGTTTTTG 58.461 47.619 0.00 0.00 0.00 2.44
176 177 1.134848 TCCTGTGTGCCTTGTTTTTGC 60.135 47.619 0.00 0.00 0.00 3.68
177 178 0.922717 CTGTGTGCCTTGTTTTTGCG 59.077 50.000 0.00 0.00 0.00 4.85
178 179 0.459237 TGTGTGCCTTGTTTTTGCGG 60.459 50.000 0.00 0.00 0.00 5.69
179 180 0.179124 GTGTGCCTTGTTTTTGCGGA 60.179 50.000 0.00 0.00 0.00 5.54
180 181 0.179124 TGTGCCTTGTTTTTGCGGAC 60.179 50.000 0.00 0.00 0.00 4.79
181 182 1.064946 TGCCTTGTTTTTGCGGACG 59.935 52.632 0.00 0.00 0.00 4.79
182 183 1.065109 GCCTTGTTTTTGCGGACGT 59.935 52.632 0.00 0.00 0.00 4.34
183 184 1.206115 GCCTTGTTTTTGCGGACGTG 61.206 55.000 0.00 0.00 0.00 4.49
184 185 0.099791 CCTTGTTTTTGCGGACGTGT 59.900 50.000 0.00 0.00 0.00 4.49
185 186 1.468395 CCTTGTTTTTGCGGACGTGTT 60.468 47.619 0.00 0.00 0.00 3.32
186 187 1.581602 CTTGTTTTTGCGGACGTGTTG 59.418 47.619 0.00 0.00 0.00 3.33
187 188 0.522180 TGTTTTTGCGGACGTGTTGT 59.478 45.000 0.00 0.00 0.00 3.32
188 189 0.911184 GTTTTTGCGGACGTGTTGTG 59.089 50.000 0.00 0.00 0.00 3.33
189 190 0.803117 TTTTTGCGGACGTGTTGTGA 59.197 45.000 0.00 0.00 0.00 3.58
190 191 0.097325 TTTTGCGGACGTGTTGTGAC 59.903 50.000 0.00 0.00 0.00 3.67
191 192 2.026493 TTTGCGGACGTGTTGTGACG 62.026 55.000 0.00 0.00 45.09 4.35
192 193 3.698463 GCGGACGTGTTGTGACGG 61.698 66.667 0.00 0.00 43.84 4.79
193 194 2.278989 CGGACGTGTTGTGACGGT 60.279 61.111 0.00 0.00 43.84 4.83
194 195 1.879430 CGGACGTGTTGTGACGGTT 60.879 57.895 0.00 0.00 43.84 4.44
195 196 1.422950 CGGACGTGTTGTGACGGTTT 61.423 55.000 0.00 0.00 43.84 3.27
196 197 0.728542 GGACGTGTTGTGACGGTTTT 59.271 50.000 0.00 0.00 43.84 2.43
197 198 1.267682 GGACGTGTTGTGACGGTTTTC 60.268 52.381 0.00 0.00 43.84 2.29
198 199 0.370958 ACGTGTTGTGACGGTTTTCG 59.629 50.000 0.00 0.00 43.84 3.46
208 209 3.442950 CGGTTTTCGTCCGGTTTTC 57.557 52.632 0.00 0.00 43.68 2.29
209 210 0.041047 CGGTTTTCGTCCGGTTTTCC 60.041 55.000 0.00 0.00 43.68 3.13
224 225 4.487948 GGTTTTCCGTTAATTAACTGGGC 58.512 43.478 25.42 17.56 33.65 5.36
225 226 4.022155 GGTTTTCCGTTAATTAACTGGGCA 60.022 41.667 25.42 16.39 33.65 5.36
226 227 5.509332 GGTTTTCCGTTAATTAACTGGGCAA 60.509 40.000 25.42 19.34 33.65 4.52
227 228 4.769859 TTCCGTTAATTAACTGGGCAAC 57.230 40.909 25.42 6.45 33.65 4.17
228 229 4.023726 TCCGTTAATTAACTGGGCAACT 57.976 40.909 25.42 0.00 33.65 3.16
229 230 4.004982 TCCGTTAATTAACTGGGCAACTC 58.995 43.478 25.42 3.42 33.65 3.01
230 231 4.007659 CCGTTAATTAACTGGGCAACTCT 58.992 43.478 22.57 0.00 34.12 3.24
231 232 4.457949 CCGTTAATTAACTGGGCAACTCTT 59.542 41.667 22.57 0.00 34.12 2.85
232 233 5.048294 CCGTTAATTAACTGGGCAACTCTTT 60.048 40.000 22.57 0.00 34.12 2.52
233 234 6.443792 CGTTAATTAACTGGGCAACTCTTTT 58.556 36.000 22.57 0.00 34.12 2.27
234 235 6.581166 CGTTAATTAACTGGGCAACTCTTTTC 59.419 38.462 22.57 0.00 34.12 2.29
235 236 4.766404 ATTAACTGGGCAACTCTTTTCG 57.234 40.909 0.00 0.00 0.00 3.46
236 237 2.341846 AACTGGGCAACTCTTTTCGA 57.658 45.000 0.00 0.00 0.00 3.71
237 238 1.594331 ACTGGGCAACTCTTTTCGAC 58.406 50.000 0.00 0.00 0.00 4.20
238 239 1.134220 ACTGGGCAACTCTTTTCGACA 60.134 47.619 0.00 0.00 0.00 4.35
239 240 2.154462 CTGGGCAACTCTTTTCGACAT 58.846 47.619 0.00 0.00 0.00 3.06
240 241 2.554032 CTGGGCAACTCTTTTCGACATT 59.446 45.455 0.00 0.00 0.00 2.71
241 242 2.955660 TGGGCAACTCTTTTCGACATTT 59.044 40.909 0.00 0.00 0.00 2.32
242 243 3.383185 TGGGCAACTCTTTTCGACATTTT 59.617 39.130 0.00 0.00 0.00 1.82
243 244 4.142049 TGGGCAACTCTTTTCGACATTTTT 60.142 37.500 0.00 0.00 0.00 1.94
262 263 5.659440 TTTTTAATGAATCAGGCCCTGAC 57.341 39.130 17.46 4.85 43.63 3.51
263 264 3.297134 TTAATGAATCAGGCCCTGACC 57.703 47.619 17.46 11.68 43.63 4.02
264 265 0.107017 AATGAATCAGGCCCTGACCG 60.107 55.000 17.46 0.00 43.63 4.79
265 266 1.274703 ATGAATCAGGCCCTGACCGT 61.275 55.000 17.46 9.66 43.63 4.83
266 267 1.450312 GAATCAGGCCCTGACCGTG 60.450 63.158 17.46 0.00 43.63 4.94
267 268 2.185310 GAATCAGGCCCTGACCGTGT 62.185 60.000 17.46 0.00 43.63 4.49
268 269 1.779061 AATCAGGCCCTGACCGTGTT 61.779 55.000 17.46 2.76 43.63 3.32
269 270 1.779061 ATCAGGCCCTGACCGTGTTT 61.779 55.000 17.46 0.00 43.63 2.83
270 271 1.966451 CAGGCCCTGACCGTGTTTC 60.966 63.158 4.15 0.00 32.44 2.78
271 272 2.112297 GGCCCTGACCGTGTTTCA 59.888 61.111 0.00 0.00 0.00 2.69
272 273 1.527380 GGCCCTGACCGTGTTTCAA 60.527 57.895 0.00 0.00 0.00 2.69
273 274 1.104577 GGCCCTGACCGTGTTTCAAA 61.105 55.000 0.00 0.00 0.00 2.69
274 275 0.741915 GCCCTGACCGTGTTTCAAAA 59.258 50.000 0.00 0.00 0.00 2.44
275 276 1.135333 GCCCTGACCGTGTTTCAAAAA 59.865 47.619 0.00 0.00 0.00 1.94
276 277 2.798145 GCCCTGACCGTGTTTCAAAAAG 60.798 50.000 0.00 0.00 0.00 2.27
277 278 2.685897 CCCTGACCGTGTTTCAAAAAGA 59.314 45.455 0.00 0.00 0.00 2.52
278 279 3.129638 CCCTGACCGTGTTTCAAAAAGAA 59.870 43.478 0.00 0.00 0.00 2.52
279 280 4.381079 CCCTGACCGTGTTTCAAAAAGAAA 60.381 41.667 0.00 0.00 43.71 2.52
343 345 5.517054 GCAATTTCTTCCACACGTACAAAAA 59.483 36.000 0.00 0.00 0.00 1.94
356 363 9.605955 CACACGTACAAAAATAGAAATGATCAA 57.394 29.630 0.00 0.00 0.00 2.57
417 428 4.816385 TCTTTTGTCAGTGATGTGAACCTC 59.184 41.667 0.00 0.00 0.00 3.85
441 452 1.001378 GTTTGTCGGCATGCAAGTTCT 60.001 47.619 21.36 0.00 0.00 3.01
482 493 0.878416 TACATGGCGTTCAGTTTGGC 59.122 50.000 0.00 0.00 0.00 4.52
487 3093 1.165270 GGCGTTCAGTTTGGCAGTAT 58.835 50.000 0.00 0.00 0.00 2.12
494 3100 5.178623 CGTTCAGTTTGGCAGTATTAGTCAA 59.821 40.000 0.00 0.00 0.00 3.18
505 3111 5.237344 GCAGTATTAGTCAACATCATCACCC 59.763 44.000 0.00 0.00 0.00 4.61
520 3126 3.201353 TCACCCTTTCATTGAACACGA 57.799 42.857 0.00 0.00 0.00 4.35
588 3194 5.316453 ACAGGAATAGCTATACCCTACCTCT 59.684 44.000 20.84 5.24 0.00 3.69
592 3198 2.064215 AGCTATACCCTACCTCTCCGT 58.936 52.381 0.00 0.00 0.00 4.69
593 3199 3.254960 AGCTATACCCTACCTCTCCGTA 58.745 50.000 0.00 0.00 0.00 4.02
594 3200 3.654806 AGCTATACCCTACCTCTCCGTAA 59.345 47.826 0.00 0.00 0.00 3.18
784 3394 2.230266 TGTACACTCAGCAAGCACGATA 59.770 45.455 0.00 0.00 0.00 2.92
795 3405 3.060473 GCAAGCACGATAGACCGATTAAC 60.060 47.826 0.00 0.00 41.38 2.01
796 3406 4.360563 CAAGCACGATAGACCGATTAACT 58.639 43.478 0.00 0.00 41.38 2.24
964 3586 0.895530 CCTCGTGCCTCCTCAAGTTA 59.104 55.000 0.00 0.00 0.00 2.24
979 3601 9.199982 CTCCTCAAGTTAACTATAAAAACACGA 57.800 33.333 8.92 0.00 0.00 4.35
1040 3674 1.006832 GCACAATACCACTACTGCCG 58.993 55.000 0.00 0.00 0.00 5.69
1245 3879 2.681778 CTGGTCTCCACGGCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
1533 8914 2.429610 GTTCATCGAGGGCTACAACCTA 59.570 50.000 0.00 0.00 38.79 3.08
1787 9169 1.202533 CGGGCATCGTCCATACTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
1889 9274 4.268167 ACGGCAAATGAAAACGTTTAAACC 59.732 37.500 15.03 8.26 33.54 3.27
1900 9285 7.870445 TGAAAACGTTTAAACCCGTACTATAGT 59.130 33.333 15.03 10.87 36.04 2.12
1901 9286 9.349145 GAAAACGTTTAAACCCGTACTATAGTA 57.651 33.333 15.03 8.59 36.04 1.82
1902 9287 8.683550 AAACGTTTAAACCCGTACTATAGTAC 57.316 34.615 26.67 26.67 45.47 2.73
1903 9288 7.625828 ACGTTTAAACCCGTACTATAGTACT 57.374 36.000 30.80 19.18 46.43 2.73
1904 9289 7.472543 ACGTTTAAACCCGTACTATAGTACTG 58.527 38.462 30.80 26.12 46.43 2.74
1906 9291 8.345565 CGTTTAAACCCGTACTATAGTACTGAT 58.654 37.037 30.80 16.30 46.43 2.90
1911 9296 7.886629 ACCCGTACTATAGTACTGATTTTCA 57.113 36.000 30.80 1.58 46.43 2.69
1913 9298 8.921205 ACCCGTACTATAGTACTGATTTTCATT 58.079 33.333 30.80 9.14 46.43 2.57
1914 9299 9.408069 CCCGTACTATAGTACTGATTTTCATTC 57.592 37.037 30.80 9.08 46.43 2.67
1915 9300 9.408069 CCGTACTATAGTACTGATTTTCATTCC 57.592 37.037 30.80 8.73 46.43 3.01
1920 9305 9.921637 CTATAGTACTGATTTTCATTCCTCTCC 57.078 37.037 5.39 0.00 0.00 3.71
1921 9306 5.665459 AGTACTGATTTTCATTCCTCTCCG 58.335 41.667 0.00 0.00 0.00 4.63
1922 9307 4.559862 ACTGATTTTCATTCCTCTCCGT 57.440 40.909 0.00 0.00 0.00 4.69
1923 9308 4.256920 ACTGATTTTCATTCCTCTCCGTG 58.743 43.478 0.00 0.00 0.00 4.94
1924 9309 3.009723 TGATTTTCATTCCTCTCCGTGC 58.990 45.455 0.00 0.00 0.00 5.34
1927 9312 2.028420 TTCATTCCTCTCCGTGCATG 57.972 50.000 0.00 0.00 0.00 4.06
1930 9315 2.615227 ATTCCTCTCCGTGCATGCCC 62.615 60.000 16.68 1.56 0.00 5.36
1931 9316 3.790437 CCTCTCCGTGCATGCCCT 61.790 66.667 16.68 0.00 0.00 5.19
1932 9317 2.434843 CCTCTCCGTGCATGCCCTA 61.435 63.158 16.68 0.00 0.00 3.53
1934 9319 0.107456 CTCTCCGTGCATGCCCTATT 59.893 55.000 16.68 0.00 0.00 1.73
1936 9321 0.464373 CTCCGTGCATGCCCTATTGT 60.464 55.000 16.68 0.00 0.00 2.71
1937 9322 0.034574 TCCGTGCATGCCCTATTGTT 60.035 50.000 16.68 0.00 0.00 2.83
1938 9323 0.817013 CCGTGCATGCCCTATTGTTT 59.183 50.000 16.68 0.00 0.00 2.83
1939 9324 1.469595 CCGTGCATGCCCTATTGTTTG 60.470 52.381 16.68 0.00 0.00 2.93
1940 9325 1.472082 CGTGCATGCCCTATTGTTTGA 59.528 47.619 16.68 0.00 0.00 2.69
1941 9326 2.094803 CGTGCATGCCCTATTGTTTGAA 60.095 45.455 16.68 0.00 0.00 2.69
1942 9327 3.613671 CGTGCATGCCCTATTGTTTGAAA 60.614 43.478 16.68 0.00 0.00 2.69
1943 9328 3.928375 GTGCATGCCCTATTGTTTGAAAG 59.072 43.478 16.68 0.00 0.00 2.62
1947 9332 5.353938 CATGCCCTATTGTTTGAAAGGATG 58.646 41.667 0.00 0.00 0.00 3.51
1949 9334 4.220382 TGCCCTATTGTTTGAAAGGATGTG 59.780 41.667 0.00 0.00 0.00 3.21
1951 9336 5.622233 GCCCTATTGTTTGAAAGGATGTGAC 60.622 44.000 0.00 0.00 0.00 3.67
1952 9337 5.476599 CCCTATTGTTTGAAAGGATGTGACA 59.523 40.000 0.00 0.00 0.00 3.58
1954 9339 5.850557 ATTGTTTGAAAGGATGTGACACA 57.149 34.783 11.41 11.41 0.00 3.72
1955 9340 4.630894 TGTTTGAAAGGATGTGACACAC 57.369 40.909 11.22 5.08 34.56 3.82
1956 9341 3.380004 TGTTTGAAAGGATGTGACACACC 59.620 43.478 11.22 13.86 32.73 4.16
1957 9342 3.289407 TTGAAAGGATGTGACACACCA 57.711 42.857 21.60 8.44 32.73 4.17
1958 9343 3.507162 TGAAAGGATGTGACACACCAT 57.493 42.857 21.60 5.70 32.73 3.55
1960 9345 4.214310 TGAAAGGATGTGACACACCATTT 58.786 39.130 12.27 12.27 32.73 2.32
1961 9346 4.648762 TGAAAGGATGTGACACACCATTTT 59.351 37.500 13.53 7.57 32.73 1.82
1962 9347 4.853924 AAGGATGTGACACACCATTTTC 57.146 40.909 21.60 11.39 32.73 2.29
1963 9348 3.831323 AGGATGTGACACACCATTTTCA 58.169 40.909 21.60 0.00 32.73 2.69
1964 9349 4.214310 AGGATGTGACACACCATTTTCAA 58.786 39.130 21.60 0.00 32.73 2.69
1965 9350 4.834496 AGGATGTGACACACCATTTTCAAT 59.166 37.500 21.60 1.33 32.73 2.57
1966 9351 5.305128 AGGATGTGACACACCATTTTCAATT 59.695 36.000 21.60 0.88 32.73 2.32
1967 9352 5.406175 GGATGTGACACACCATTTTCAATTG 59.594 40.000 11.22 0.00 32.73 2.32
1968 9353 4.691175 TGTGACACACCATTTTCAATTGG 58.309 39.130 3.56 0.00 39.02 3.16
1971 9356 2.437281 ACACACCATTTTCAATTGGCCA 59.563 40.909 0.00 0.00 36.41 5.36
1972 9357 3.118112 ACACACCATTTTCAATTGGCCAA 60.118 39.130 23.00 23.00 36.41 4.52
1973 9358 3.881688 CACACCATTTTCAATTGGCCAAA 59.118 39.130 24.71 4.73 36.41 3.28
1975 9360 4.579753 ACACCATTTTCAATTGGCCAAAAG 59.420 37.500 24.71 17.85 36.41 2.27
1979 9364 5.978322 CCATTTTCAATTGGCCAAAAGTTTG 59.022 36.000 24.71 21.44 37.90 2.93
1980 9365 4.629251 TTTCAATTGGCCAAAAGTTTGC 57.371 36.364 24.71 0.00 36.86 3.68
1981 9366 3.272574 TCAATTGGCCAAAAGTTTGCA 57.727 38.095 24.71 9.46 36.86 4.08
1982 9367 2.941720 TCAATTGGCCAAAAGTTTGCAC 59.058 40.909 24.71 0.00 36.86 4.57
1983 9368 2.944349 CAATTGGCCAAAAGTTTGCACT 59.056 40.909 24.71 0.00 36.86 4.40
1984 9369 2.777832 TTGGCCAAAAGTTTGCACTT 57.222 40.000 17.98 0.00 45.89 3.16
1985 9370 3.895232 TTGGCCAAAAGTTTGCACTTA 57.105 38.095 17.98 0.00 42.89 2.24
1986 9371 3.172229 TGGCCAAAAGTTTGCACTTAC 57.828 42.857 0.61 0.00 42.89 2.34
1987 9372 2.159028 TGGCCAAAAGTTTGCACTTACC 60.159 45.455 0.61 0.00 42.89 2.85
1988 9373 2.479837 GCCAAAAGTTTGCACTTACCC 58.520 47.619 0.00 0.00 42.89 3.69
1989 9374 2.738135 CCAAAAGTTTGCACTTACCCG 58.262 47.619 0.00 0.00 42.89 5.28
1990 9375 2.124122 CAAAAGTTTGCACTTACCCGC 58.876 47.619 0.00 0.00 42.89 6.13
1991 9376 1.687563 AAAGTTTGCACTTACCCGCT 58.312 45.000 0.00 0.00 42.89 5.52
1992 9377 1.235724 AAGTTTGCACTTACCCGCTC 58.764 50.000 0.00 0.00 41.81 5.03
1994 9379 1.621814 AGTTTGCACTTACCCGCTCTA 59.378 47.619 0.00 0.00 0.00 2.43
1995 9380 2.236395 AGTTTGCACTTACCCGCTCTAT 59.764 45.455 0.00 0.00 0.00 1.98
1996 9381 2.309528 TTGCACTTACCCGCTCTATG 57.690 50.000 0.00 0.00 0.00 2.23
1997 9382 1.191535 TGCACTTACCCGCTCTATGT 58.808 50.000 0.00 0.00 0.00 2.29
1998 9383 1.553248 TGCACTTACCCGCTCTATGTT 59.447 47.619 0.00 0.00 0.00 2.71
2001 9386 3.679083 GCACTTACCCGCTCTATGTTCTT 60.679 47.826 0.00 0.00 0.00 2.52
2002 9387 4.113354 CACTTACCCGCTCTATGTTCTTC 58.887 47.826 0.00 0.00 0.00 2.87
2003 9388 3.181489 ACTTACCCGCTCTATGTTCTTCG 60.181 47.826 0.00 0.00 0.00 3.79
2004 9389 0.460311 ACCCGCTCTATGTTCTTCGG 59.540 55.000 0.00 0.00 36.90 4.30
2005 9390 0.460311 CCCGCTCTATGTTCTTCGGT 59.540 55.000 0.00 0.00 35.52 4.69
2006 9391 1.536284 CCCGCTCTATGTTCTTCGGTC 60.536 57.143 0.00 0.00 35.52 4.79
2007 9392 1.134367 CCGCTCTATGTTCTTCGGTCA 59.866 52.381 0.00 0.00 32.93 4.02
2008 9393 2.455032 CGCTCTATGTTCTTCGGTCAG 58.545 52.381 0.00 0.00 0.00 3.51
2009 9394 2.796383 CGCTCTATGTTCTTCGGTCAGG 60.796 54.545 0.00 0.00 0.00 3.86
2010 9395 2.482142 GCTCTATGTTCTTCGGTCAGGG 60.482 54.545 0.00 0.00 0.00 4.45
2011 9396 2.761208 CTCTATGTTCTTCGGTCAGGGT 59.239 50.000 0.00 0.00 0.00 4.34
2012 9397 2.758979 TCTATGTTCTTCGGTCAGGGTC 59.241 50.000 0.00 0.00 0.00 4.46
2013 9398 1.348064 ATGTTCTTCGGTCAGGGTCA 58.652 50.000 0.00 0.00 0.00 4.02
2014 9399 0.391597 TGTTCTTCGGTCAGGGTCAC 59.608 55.000 0.00 0.00 0.00 3.67
2015 9400 0.320508 GTTCTTCGGTCAGGGTCACC 60.321 60.000 0.00 0.00 0.00 4.02
2016 9401 0.761323 TTCTTCGGTCAGGGTCACCA 60.761 55.000 0.00 0.00 40.13 4.17
2017 9402 1.004918 CTTCGGTCAGGGTCACCAC 60.005 63.158 0.00 0.00 40.13 4.16
2018 9403 1.458777 TTCGGTCAGGGTCACCACT 60.459 57.895 0.00 0.00 40.13 4.00
2019 9404 0.178955 TTCGGTCAGGGTCACCACTA 60.179 55.000 0.00 0.00 40.13 2.74
2020 9405 0.178955 TCGGTCAGGGTCACCACTAA 60.179 55.000 0.00 0.00 40.13 2.24
2021 9406 0.037605 CGGTCAGGGTCACCACTAAC 60.038 60.000 0.00 0.00 40.13 2.34
2323 9862 0.818040 GTCAAGCAACCCACCTCGTT 60.818 55.000 0.00 0.00 0.00 3.85
2334 9873 0.870307 CACCTCGTTTATCGGCCTCG 60.870 60.000 0.00 0.00 40.32 4.63
2368 9907 0.109735 GCTTCCCGCAACAGTAAAGC 60.110 55.000 0.00 0.00 38.92 3.51
2389 9928 1.069090 TGACGTCTTGTGGTGGAGC 59.931 57.895 17.92 0.00 0.00 4.70
2426 9965 1.415659 AGAGATGTCATACTGGCAGCC 59.584 52.381 15.89 3.66 39.53 4.85
2437 9976 3.433306 ACTGGCAGCCTTTGTAACATA 57.567 42.857 15.89 0.00 0.00 2.29
2483 10022 2.434185 GGTTGTCGAGGCGATGCA 60.434 61.111 0.00 0.00 38.42 3.96
2495 10034 1.470098 GGCGATGCACAAACTCAGAAT 59.530 47.619 0.00 0.00 0.00 2.40
2501 10040 5.391203 CGATGCACAAACTCAGAATCATCAA 60.391 40.000 0.00 0.00 31.94 2.57
2504 10043 7.451501 TGCACAAACTCAGAATCATCAATAA 57.548 32.000 0.00 0.00 0.00 1.40
2513 10052 9.254133 ACTCAGAATCATCAATAACAATCTACG 57.746 33.333 0.00 0.00 0.00 3.51
2514 10053 9.254133 CTCAGAATCATCAATAACAATCTACGT 57.746 33.333 0.00 0.00 0.00 3.57
2529 10068 9.673454 AACAATCTACGTAAATTCCTTTCAAAC 57.327 29.630 0.00 0.00 0.00 2.93
2545 10084 4.498894 TCAAACAGGATGCATCTCTCAT 57.501 40.909 25.28 7.71 42.53 2.90
2552 10091 3.651423 AGGATGCATCTCTCATTGGATCA 59.349 43.478 25.28 0.00 41.05 2.92
2553 10092 3.752222 GGATGCATCTCTCATTGGATCAC 59.248 47.826 25.28 0.54 41.05 3.06
2578 10118 8.435982 ACTGATTCTTCCTCAATTATCCCTAAG 58.564 37.037 0.00 0.00 0.00 2.18
2601 10141 4.857037 GTCAAAAGAACACACTTGGTTCAC 59.143 41.667 7.87 0.00 45.45 3.18
2604 10144 3.627395 AGAACACACTTGGTTCACAGA 57.373 42.857 7.87 0.00 45.45 3.41
2661 10201 5.221891 AGTAGCGCAAAATTAGTCACATG 57.778 39.130 11.47 0.00 0.00 3.21
2672 10213 0.528924 AGTCACATGCGGCTTACGTA 59.471 50.000 0.00 0.00 46.52 3.57
2677 10218 2.861335 CACATGCGGCTTACGTACATAA 59.139 45.455 0.00 0.00 46.52 1.90
2681 10222 5.754406 ACATGCGGCTTACGTACATAAAATA 59.246 36.000 0.00 0.00 46.52 1.40
2682 10223 6.258287 ACATGCGGCTTACGTACATAAAATAA 59.742 34.615 0.00 0.00 46.52 1.40
2731 10272 0.246635 GCACTAAGCTCCTCGACCAA 59.753 55.000 0.00 0.00 41.15 3.67
2732 10273 1.337823 GCACTAAGCTCCTCGACCAAA 60.338 52.381 0.00 0.00 41.15 3.28
2738 10279 0.721718 GCTCCTCGACCAAAACATCG 59.278 55.000 0.00 0.00 39.72 3.84
2794 10336 0.329261 TCTCCTCGTCCCCGAAACTA 59.671 55.000 0.00 0.00 43.69 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.419374 CTGCCATTACGTAGCCGATC 58.581 55.000 0.00 0.00 37.88 3.69
1 2 0.033504 CCTGCCATTACGTAGCCGAT 59.966 55.000 0.00 0.00 37.88 4.18
3 4 0.461339 AACCTGCCATTACGTAGCCG 60.461 55.000 0.00 0.00 40.83 5.52
4 5 2.480845 CTAACCTGCCATTACGTAGCC 58.519 52.381 0.00 0.00 0.00 3.93
5 6 1.865340 GCTAACCTGCCATTACGTAGC 59.135 52.381 0.00 0.00 0.00 3.58
6 7 3.454371 AGCTAACCTGCCATTACGTAG 57.546 47.619 0.00 0.00 0.00 3.51
7 8 3.899052 AAGCTAACCTGCCATTACGTA 57.101 42.857 0.00 0.00 0.00 3.57
8 9 2.781681 AAGCTAACCTGCCATTACGT 57.218 45.000 0.00 0.00 0.00 3.57
9 10 5.751243 ATTAAAGCTAACCTGCCATTACG 57.249 39.130 0.00 0.00 0.00 3.18
10 11 8.683615 AGTAAATTAAAGCTAACCTGCCATTAC 58.316 33.333 0.00 0.00 0.00 1.89
11 12 8.682710 CAGTAAATTAAAGCTAACCTGCCATTA 58.317 33.333 0.00 0.00 0.00 1.90
12 13 7.396055 TCAGTAAATTAAAGCTAACCTGCCATT 59.604 33.333 0.00 0.00 0.00 3.16
13 14 6.889722 TCAGTAAATTAAAGCTAACCTGCCAT 59.110 34.615 0.00 0.00 0.00 4.40
14 15 6.242396 TCAGTAAATTAAAGCTAACCTGCCA 58.758 36.000 0.00 0.00 0.00 4.92
15 16 6.753107 TCAGTAAATTAAAGCTAACCTGCC 57.247 37.500 0.00 0.00 0.00 4.85
16 17 8.040716 TCTTCAGTAAATTAAAGCTAACCTGC 57.959 34.615 0.00 0.00 0.00 4.85
30 31 8.847196 GGGAGTAAGTGTTTTTCTTCAGTAAAT 58.153 33.333 0.00 0.00 0.00 1.40
31 32 8.050930 AGGGAGTAAGTGTTTTTCTTCAGTAAA 58.949 33.333 0.00 0.00 0.00 2.01
32 33 7.571025 AGGGAGTAAGTGTTTTTCTTCAGTAA 58.429 34.615 0.00 0.00 0.00 2.24
33 34 7.070821 AGAGGGAGTAAGTGTTTTTCTTCAGTA 59.929 37.037 0.00 0.00 0.00 2.74
34 35 6.002653 AGGGAGTAAGTGTTTTTCTTCAGT 57.997 37.500 0.00 0.00 0.00 3.41
35 36 6.292150 AGAGGGAGTAAGTGTTTTTCTTCAG 58.708 40.000 0.00 0.00 0.00 3.02
36 37 6.248569 AGAGGGAGTAAGTGTTTTTCTTCA 57.751 37.500 0.00 0.00 0.00 3.02
37 38 5.701750 GGAGAGGGAGTAAGTGTTTTTCTTC 59.298 44.000 0.00 0.00 0.00 2.87
38 39 5.132144 TGGAGAGGGAGTAAGTGTTTTTCTT 59.868 40.000 0.00 0.00 0.00 2.52
39 40 4.658901 TGGAGAGGGAGTAAGTGTTTTTCT 59.341 41.667 0.00 0.00 0.00 2.52
40 41 4.969484 TGGAGAGGGAGTAAGTGTTTTTC 58.031 43.478 0.00 0.00 0.00 2.29
41 42 5.310857 AGATGGAGAGGGAGTAAGTGTTTTT 59.689 40.000 0.00 0.00 0.00 1.94
42 43 4.846940 AGATGGAGAGGGAGTAAGTGTTTT 59.153 41.667 0.00 0.00 0.00 2.43
43 44 4.223923 CAGATGGAGAGGGAGTAAGTGTTT 59.776 45.833 0.00 0.00 0.00 2.83
44 45 3.772025 CAGATGGAGAGGGAGTAAGTGTT 59.228 47.826 0.00 0.00 0.00 3.32
45 46 3.245803 ACAGATGGAGAGGGAGTAAGTGT 60.246 47.826 0.00 0.00 0.00 3.55
46 47 3.370104 ACAGATGGAGAGGGAGTAAGTG 58.630 50.000 0.00 0.00 0.00 3.16
47 48 3.767309 ACAGATGGAGAGGGAGTAAGT 57.233 47.619 0.00 0.00 0.00 2.24
48 49 5.894393 TCTTTACAGATGGAGAGGGAGTAAG 59.106 44.000 0.00 0.00 0.00 2.34
49 50 5.838955 TCTTTACAGATGGAGAGGGAGTAA 58.161 41.667 0.00 0.00 0.00 2.24
50 51 5.467668 TCTTTACAGATGGAGAGGGAGTA 57.532 43.478 0.00 0.00 0.00 2.59
51 52 4.338795 TCTTTACAGATGGAGAGGGAGT 57.661 45.455 0.00 0.00 0.00 3.85
52 53 5.683876 TTTCTTTACAGATGGAGAGGGAG 57.316 43.478 0.00 0.00 0.00 4.30
53 54 6.903534 ACTATTTCTTTACAGATGGAGAGGGA 59.096 38.462 0.00 0.00 0.00 4.20
54 55 6.989169 CACTATTTCTTTACAGATGGAGAGGG 59.011 42.308 0.00 0.00 0.00 4.30
55 56 7.786030 TCACTATTTCTTTACAGATGGAGAGG 58.214 38.462 0.00 0.00 0.00 3.69
56 57 9.474920 GATCACTATTTCTTTACAGATGGAGAG 57.525 37.037 0.00 0.00 0.00 3.20
57 58 9.206690 AGATCACTATTTCTTTACAGATGGAGA 57.793 33.333 0.00 0.00 0.00 3.71
64 65 9.690434 GCGTTTTAGATCACTATTTCTTTACAG 57.310 33.333 0.00 0.00 0.00 2.74
65 66 9.431887 AGCGTTTTAGATCACTATTTCTTTACA 57.568 29.630 0.00 0.00 0.00 2.41
66 67 9.903185 GAGCGTTTTAGATCACTATTTCTTTAC 57.097 33.333 0.00 0.00 0.00 2.01
67 68 9.871238 AGAGCGTTTTAGATCACTATTTCTTTA 57.129 29.630 0.00 0.00 0.00 1.85
68 69 8.779354 AGAGCGTTTTAGATCACTATTTCTTT 57.221 30.769 0.00 0.00 0.00 2.52
69 70 8.779354 AAGAGCGTTTTAGATCACTATTTCTT 57.221 30.769 0.00 0.00 0.00 2.52
76 77 9.073475 AGAGATATAAGAGCGTTTTAGATCACT 57.927 33.333 12.01 9.31 33.38 3.41
77 78 9.685828 AAGAGATATAAGAGCGTTTTAGATCAC 57.314 33.333 12.01 7.84 33.38 3.06
109 110 9.918630 GAACGCATATAGTATTCCCTAAGTAAA 57.081 33.333 0.00 0.00 0.00 2.01
110 111 9.305555 AGAACGCATATAGTATTCCCTAAGTAA 57.694 33.333 0.00 0.00 0.00 2.24
111 112 8.874744 AGAACGCATATAGTATTCCCTAAGTA 57.125 34.615 0.00 0.00 0.00 2.24
112 113 7.778185 AGAACGCATATAGTATTCCCTAAGT 57.222 36.000 0.00 0.00 0.00 2.24
113 114 8.088981 ACAAGAACGCATATAGTATTCCCTAAG 58.911 37.037 0.00 0.00 0.00 2.18
114 115 7.870954 CACAAGAACGCATATAGTATTCCCTAA 59.129 37.037 0.00 0.00 0.00 2.69
115 116 7.014905 ACACAAGAACGCATATAGTATTCCCTA 59.985 37.037 0.00 0.00 0.00 3.53
116 117 6.183360 ACACAAGAACGCATATAGTATTCCCT 60.183 38.462 0.00 0.00 0.00 4.20
117 118 5.989777 ACACAAGAACGCATATAGTATTCCC 59.010 40.000 0.00 0.00 0.00 3.97
118 119 6.073765 CCACACAAGAACGCATATAGTATTCC 60.074 42.308 0.00 0.00 0.00 3.01
119 120 6.073765 CCCACACAAGAACGCATATAGTATTC 60.074 42.308 0.00 0.00 0.00 1.75
120 121 5.758296 CCCACACAAGAACGCATATAGTATT 59.242 40.000 0.00 0.00 0.00 1.89
121 122 5.163343 ACCCACACAAGAACGCATATAGTAT 60.163 40.000 0.00 0.00 0.00 2.12
122 123 4.160814 ACCCACACAAGAACGCATATAGTA 59.839 41.667 0.00 0.00 0.00 1.82
123 124 3.055385 ACCCACACAAGAACGCATATAGT 60.055 43.478 0.00 0.00 0.00 2.12
124 125 3.531538 ACCCACACAAGAACGCATATAG 58.468 45.455 0.00 0.00 0.00 1.31
125 126 3.620427 ACCCACACAAGAACGCATATA 57.380 42.857 0.00 0.00 0.00 0.86
126 127 2.487762 CAACCCACACAAGAACGCATAT 59.512 45.455 0.00 0.00 0.00 1.78
127 128 1.876799 CAACCCACACAAGAACGCATA 59.123 47.619 0.00 0.00 0.00 3.14
128 129 0.667993 CAACCCACACAAGAACGCAT 59.332 50.000 0.00 0.00 0.00 4.73
129 130 1.999071 GCAACCCACACAAGAACGCA 61.999 55.000 0.00 0.00 0.00 5.24
130 131 1.299089 GCAACCCACACAAGAACGC 60.299 57.895 0.00 0.00 0.00 4.84
131 132 1.358759 GGCAACCCACACAAGAACG 59.641 57.895 0.00 0.00 0.00 3.95
132 133 0.385390 CTGGCAACCCACACAAGAAC 59.615 55.000 0.00 0.00 35.79 3.01
133 134 0.754957 CCTGGCAACCCACACAAGAA 60.755 55.000 0.00 0.00 35.79 2.52
134 135 1.152777 CCTGGCAACCCACACAAGA 60.153 57.895 0.00 0.00 35.79 3.02
135 136 1.455383 GACCTGGCAACCCACACAAG 61.455 60.000 0.00 0.00 35.79 3.16
136 137 1.454847 GACCTGGCAACCCACACAA 60.455 57.895 0.00 0.00 35.79 3.33
137 138 2.194597 GACCTGGCAACCCACACA 59.805 61.111 0.00 0.00 35.79 3.72
138 139 2.978010 CGACCTGGCAACCCACAC 60.978 66.667 0.00 0.00 35.79 3.82
139 140 3.469863 GACGACCTGGCAACCCACA 62.470 63.158 0.00 0.00 35.79 4.17
140 141 2.668550 GACGACCTGGCAACCCAC 60.669 66.667 0.00 0.00 35.79 4.61
141 142 3.948719 GGACGACCTGGCAACCCA 61.949 66.667 0.00 0.00 39.32 4.51
142 143 3.637273 AGGACGACCTGGCAACCC 61.637 66.667 5.39 0.00 45.92 4.11
151 152 1.961277 CAAGGCACACAGGACGACC 60.961 63.158 0.00 0.00 0.00 4.79
152 153 0.814010 AACAAGGCACACAGGACGAC 60.814 55.000 0.00 0.00 0.00 4.34
153 154 0.107410 AAACAAGGCACACAGGACGA 60.107 50.000 0.00 0.00 0.00 4.20
154 155 0.738389 AAAACAAGGCACACAGGACG 59.262 50.000 0.00 0.00 0.00 4.79
155 156 2.539476 CAAAAACAAGGCACACAGGAC 58.461 47.619 0.00 0.00 0.00 3.85
156 157 1.134848 GCAAAAACAAGGCACACAGGA 60.135 47.619 0.00 0.00 0.00 3.86
157 158 1.289276 GCAAAAACAAGGCACACAGG 58.711 50.000 0.00 0.00 0.00 4.00
158 159 0.922717 CGCAAAAACAAGGCACACAG 59.077 50.000 0.00 0.00 0.00 3.66
159 160 0.459237 CCGCAAAAACAAGGCACACA 60.459 50.000 0.00 0.00 0.00 3.72
160 161 0.179124 TCCGCAAAAACAAGGCACAC 60.179 50.000 0.00 0.00 0.00 3.82
161 162 0.179124 GTCCGCAAAAACAAGGCACA 60.179 50.000 0.00 0.00 0.00 4.57
162 163 1.206115 CGTCCGCAAAAACAAGGCAC 61.206 55.000 0.00 0.00 0.00 5.01
163 164 1.064946 CGTCCGCAAAAACAAGGCA 59.935 52.632 0.00 0.00 0.00 4.75
164 165 1.065109 ACGTCCGCAAAAACAAGGC 59.935 52.632 0.00 0.00 0.00 4.35
165 166 0.099791 ACACGTCCGCAAAAACAAGG 59.900 50.000 0.00 0.00 0.00 3.61
166 167 1.581602 CAACACGTCCGCAAAAACAAG 59.418 47.619 0.00 0.00 0.00 3.16
167 168 1.068472 ACAACACGTCCGCAAAAACAA 60.068 42.857 0.00 0.00 0.00 2.83
168 169 0.522180 ACAACACGTCCGCAAAAACA 59.478 45.000 0.00 0.00 0.00 2.83
169 170 0.911184 CACAACACGTCCGCAAAAAC 59.089 50.000 0.00 0.00 0.00 2.43
170 171 0.803117 TCACAACACGTCCGCAAAAA 59.197 45.000 0.00 0.00 0.00 1.94
171 172 0.097325 GTCACAACACGTCCGCAAAA 59.903 50.000 0.00 0.00 0.00 2.44
172 173 1.716760 GTCACAACACGTCCGCAAA 59.283 52.632 0.00 0.00 0.00 3.68
173 174 2.518312 CGTCACAACACGTCCGCAA 61.518 57.895 0.00 0.00 34.95 4.85
174 175 2.957489 CGTCACAACACGTCCGCA 60.957 61.111 0.00 0.00 34.95 5.69
175 176 3.698463 CCGTCACAACACGTCCGC 61.698 66.667 0.00 0.00 38.14 5.54
176 177 1.422950 AAACCGTCACAACACGTCCG 61.423 55.000 0.00 0.00 38.14 4.79
177 178 0.728542 AAAACCGTCACAACACGTCC 59.271 50.000 0.00 0.00 38.14 4.79
178 179 1.590442 CGAAAACCGTCACAACACGTC 60.590 52.381 0.00 0.00 38.14 4.34
179 180 0.370958 CGAAAACCGTCACAACACGT 59.629 50.000 0.00 0.00 38.14 4.49
180 181 3.121945 CGAAAACCGTCACAACACG 57.878 52.632 0.00 0.00 39.61 4.49
191 192 0.041047 CGGAAAACCGGACGAAAACC 60.041 55.000 9.46 0.90 0.00 3.27
192 193 0.657312 ACGGAAAACCGGACGAAAAC 59.343 50.000 9.46 0.00 37.53 2.43
193 194 1.377536 AACGGAAAACCGGACGAAAA 58.622 45.000 9.46 0.00 37.53 2.29
194 195 2.231215 TAACGGAAAACCGGACGAAA 57.769 45.000 9.46 0.00 37.53 3.46
195 196 2.231215 TTAACGGAAAACCGGACGAA 57.769 45.000 9.46 0.00 37.53 3.85
196 197 2.453983 ATTAACGGAAAACCGGACGA 57.546 45.000 9.46 0.00 37.53 4.20
197 198 4.152223 AGTTAATTAACGGAAAACCGGACG 59.848 41.667 19.92 7.10 40.96 4.79
198 199 5.384787 CAGTTAATTAACGGAAAACCGGAC 58.615 41.667 19.91 0.00 40.96 4.79
199 200 4.455190 CCAGTTAATTAACGGAAAACCGGA 59.545 41.667 24.48 0.00 40.96 5.14
200 201 4.379708 CCCAGTTAATTAACGGAAAACCGG 60.380 45.833 26.78 16.91 40.96 5.28
201 202 4.725359 CCCAGTTAATTAACGGAAAACCG 58.275 43.478 26.78 13.36 40.96 4.44
202 203 4.022155 TGCCCAGTTAATTAACGGAAAACC 60.022 41.667 26.78 14.02 40.96 3.27
203 204 5.123805 TGCCCAGTTAATTAACGGAAAAC 57.876 39.130 26.78 18.05 40.96 2.43
204 205 5.302313 AGTTGCCCAGTTAATTAACGGAAAA 59.698 36.000 26.78 20.29 40.96 2.29
205 206 4.828387 AGTTGCCCAGTTAATTAACGGAAA 59.172 37.500 26.78 19.34 40.96 3.13
206 207 4.400120 AGTTGCCCAGTTAATTAACGGAA 58.600 39.130 26.78 17.10 40.96 4.30
207 208 4.004982 GAGTTGCCCAGTTAATTAACGGA 58.995 43.478 26.78 13.37 40.96 4.69
208 209 4.007659 AGAGTTGCCCAGTTAATTAACGG 58.992 43.478 19.92 21.15 40.96 4.44
209 210 5.622770 AAGAGTTGCCCAGTTAATTAACG 57.377 39.130 19.92 15.03 40.96 3.18
210 211 6.581166 CGAAAAGAGTTGCCCAGTTAATTAAC 59.419 38.462 18.77 18.77 36.46 2.01
211 212 6.487331 TCGAAAAGAGTTGCCCAGTTAATTAA 59.513 34.615 0.00 0.00 0.00 1.40
212 213 5.998981 TCGAAAAGAGTTGCCCAGTTAATTA 59.001 36.000 0.00 0.00 0.00 1.40
213 214 4.825085 TCGAAAAGAGTTGCCCAGTTAATT 59.175 37.500 0.00 0.00 0.00 1.40
214 215 4.215613 GTCGAAAAGAGTTGCCCAGTTAAT 59.784 41.667 0.00 0.00 0.00 1.40
215 216 3.562557 GTCGAAAAGAGTTGCCCAGTTAA 59.437 43.478 0.00 0.00 0.00 2.01
216 217 3.135994 GTCGAAAAGAGTTGCCCAGTTA 58.864 45.455 0.00 0.00 0.00 2.24
217 218 1.947456 GTCGAAAAGAGTTGCCCAGTT 59.053 47.619 0.00 0.00 0.00 3.16
218 219 1.134220 TGTCGAAAAGAGTTGCCCAGT 60.134 47.619 0.00 0.00 0.00 4.00
219 220 1.593196 TGTCGAAAAGAGTTGCCCAG 58.407 50.000 0.00 0.00 0.00 4.45
220 221 2.270352 ATGTCGAAAAGAGTTGCCCA 57.730 45.000 0.00 0.00 0.00 5.36
221 222 3.643159 AAATGTCGAAAAGAGTTGCCC 57.357 42.857 0.00 0.00 0.00 5.36
240 241 4.466015 GGTCAGGGCCTGATTCATTAAAAA 59.534 41.667 36.94 9.33 42.73 1.94
241 242 4.023291 GGTCAGGGCCTGATTCATTAAAA 58.977 43.478 36.94 9.89 42.73 1.52
242 243 3.631250 GGTCAGGGCCTGATTCATTAAA 58.369 45.455 36.94 10.69 42.73 1.52
243 244 2.421388 CGGTCAGGGCCTGATTCATTAA 60.421 50.000 36.94 11.48 42.73 1.40
244 245 1.140852 CGGTCAGGGCCTGATTCATTA 59.859 52.381 36.94 12.29 42.73 1.90
245 246 0.107017 CGGTCAGGGCCTGATTCATT 60.107 55.000 36.94 0.00 42.73 2.57
246 247 1.274703 ACGGTCAGGGCCTGATTCAT 61.275 55.000 36.94 19.42 42.73 2.57
247 248 1.918293 ACGGTCAGGGCCTGATTCA 60.918 57.895 36.94 14.30 42.73 2.57
248 249 1.450312 CACGGTCAGGGCCTGATTC 60.450 63.158 36.94 28.47 42.73 2.52
249 250 1.779061 AACACGGTCAGGGCCTGATT 61.779 55.000 36.94 24.20 42.73 2.57
250 251 1.779061 AAACACGGTCAGGGCCTGAT 61.779 55.000 36.94 20.47 42.73 2.90
251 252 2.391724 GAAACACGGTCAGGGCCTGA 62.392 60.000 32.01 32.01 38.25 3.86
252 253 1.966451 GAAACACGGTCAGGGCCTG 60.966 63.158 28.01 28.01 0.00 4.85
253 254 1.990160 TTGAAACACGGTCAGGGCCT 61.990 55.000 0.00 0.00 0.00 5.19
254 255 1.104577 TTTGAAACACGGTCAGGGCC 61.105 55.000 0.00 0.00 0.00 5.80
255 256 0.741915 TTTTGAAACACGGTCAGGGC 59.258 50.000 0.00 0.00 0.00 5.19
256 257 2.685897 TCTTTTTGAAACACGGTCAGGG 59.314 45.455 0.00 0.00 0.00 4.45
257 258 4.364415 TTCTTTTTGAAACACGGTCAGG 57.636 40.909 0.00 0.00 0.00 3.86
258 259 6.364976 AGTTTTTCTTTTTGAAACACGGTCAG 59.635 34.615 0.00 0.00 45.14 3.51
259 260 6.217294 AGTTTTTCTTTTTGAAACACGGTCA 58.783 32.000 0.00 0.00 45.14 4.02
260 261 6.699895 AGTTTTTCTTTTTGAAACACGGTC 57.300 33.333 0.00 0.00 45.14 4.79
261 262 7.329962 CCTAAGTTTTTCTTTTTGAAACACGGT 59.670 33.333 0.00 0.00 45.14 4.83
262 263 7.542824 TCCTAAGTTTTTCTTTTTGAAACACGG 59.457 33.333 0.00 0.00 45.14 4.94
263 264 8.455598 TCCTAAGTTTTTCTTTTTGAAACACG 57.544 30.769 0.00 0.00 45.14 4.49
265 266 9.990360 ACTTCCTAAGTTTTTCTTTTTGAAACA 57.010 25.926 0.00 0.00 39.04 2.83
277 278 9.872721 GCTCTGTATAGTACTTCCTAAGTTTTT 57.127 33.333 0.00 0.00 42.81 1.94
278 279 9.257428 AGCTCTGTATAGTACTTCCTAAGTTTT 57.743 33.333 0.00 0.00 42.81 2.43
279 280 8.826293 AGCTCTGTATAGTACTTCCTAAGTTT 57.174 34.615 0.00 0.00 42.81 2.66
280 281 8.053963 TGAGCTCTGTATAGTACTTCCTAAGTT 58.946 37.037 16.19 0.00 42.81 2.66
281 282 7.575505 TGAGCTCTGTATAGTACTTCCTAAGT 58.424 38.462 16.19 0.00 45.40 2.24
282 283 7.934665 TCTGAGCTCTGTATAGTACTTCCTAAG 59.065 40.741 16.19 0.00 0.00 2.18
283 284 7.803131 TCTGAGCTCTGTATAGTACTTCCTAA 58.197 38.462 16.19 0.00 0.00 2.69
284 285 7.376335 TCTGAGCTCTGTATAGTACTTCCTA 57.624 40.000 16.19 0.00 0.00 2.94
285 286 6.255294 TCTGAGCTCTGTATAGTACTTCCT 57.745 41.667 16.19 0.00 0.00 3.36
286 287 7.148540 CGTATCTGAGCTCTGTATAGTACTTCC 60.149 44.444 16.19 0.00 0.00 3.46
343 345 4.971830 CGCGTTGCAATTGATCATTTCTAT 59.028 37.500 10.34 0.00 0.00 1.98
356 363 1.635844 TAGATTCGACGCGTTGCAAT 58.364 45.000 21.93 19.65 0.00 3.56
417 428 0.040514 TTGCATGCCGACAAACTTCG 60.041 50.000 16.68 0.00 38.80 3.79
441 452 1.798087 CATGCTGACGAATGCTGCA 59.202 52.632 4.13 4.13 42.88 4.41
482 493 6.586344 AGGGTGATGATGTTGACTAATACTG 58.414 40.000 0.00 0.00 0.00 2.74
487 3093 5.875224 TGAAAGGGTGATGATGTTGACTAA 58.125 37.500 0.00 0.00 0.00 2.24
494 3100 5.047802 GTGTTCAATGAAAGGGTGATGATGT 60.048 40.000 0.00 0.00 0.00 3.06
505 3111 5.130519 CAGTACGTTCGTGTTCAATGAAAG 58.869 41.667 8.14 0.00 38.71 2.62
520 3126 6.261826 ACTCACTACTTGTTCTACAGTACGTT 59.738 38.462 0.00 0.00 0.00 3.99
784 3394 4.021368 AGCACACACTAAGTTAATCGGTCT 60.021 41.667 0.00 0.00 0.00 3.85
795 3405 1.139989 CACCACGAGCACACACTAAG 58.860 55.000 0.00 0.00 0.00 2.18
796 3406 0.249699 CCACCACGAGCACACACTAA 60.250 55.000 0.00 0.00 0.00 2.24
843 3454 2.636830 GTACATGCAGCCACATCTTCT 58.363 47.619 0.00 0.00 0.00 2.85
939 3551 2.358737 GGAGGCACGAGGGTTGTG 60.359 66.667 0.00 0.00 40.32 3.33
964 3586 4.391155 TGCCCTGTCGTGTTTTTATAGTT 58.609 39.130 0.00 0.00 0.00 2.24
979 3601 4.626081 GGACACACGCTGCCCTGT 62.626 66.667 0.00 0.00 0.00 4.00
1040 3674 3.230134 AGCTAGTGAGATGGATGGAGAC 58.770 50.000 0.00 0.00 0.00 3.36
1159 3793 1.482278 GCGAAGTCGATGGATGACTC 58.518 55.000 4.59 0.00 45.62 3.36
1245 3879 2.491621 CTGACGCCGAGCATGAGA 59.508 61.111 0.00 0.00 0.00 3.27
1326 8707 3.592814 CCGATGGCCATGCTGCAG 61.593 66.667 26.56 10.11 0.00 4.41
1372 8753 2.278206 CTCCGCGATCTCCACGTG 60.278 66.667 8.23 9.08 40.27 4.49
1787 9169 6.183360 GCTAGTACTGGGTACTTTATTCCGAA 60.183 42.308 14.27 0.00 45.68 4.30
1900 9285 5.419542 CACGGAGAGGAATGAAAATCAGTA 58.580 41.667 0.00 0.00 0.00 2.74
1901 9286 4.256920 CACGGAGAGGAATGAAAATCAGT 58.743 43.478 0.00 0.00 0.00 3.41
1902 9287 3.064545 GCACGGAGAGGAATGAAAATCAG 59.935 47.826 0.00 0.00 0.00 2.90
1903 9288 3.009723 GCACGGAGAGGAATGAAAATCA 58.990 45.455 0.00 0.00 0.00 2.57
1904 9289 3.009723 TGCACGGAGAGGAATGAAAATC 58.990 45.455 0.00 0.00 0.00 2.17
1906 9291 2.559698 TGCACGGAGAGGAATGAAAA 57.440 45.000 0.00 0.00 0.00 2.29
1911 9296 1.153086 GGCATGCACGGAGAGGAAT 60.153 57.895 21.36 0.00 0.00 3.01
1913 9298 2.871795 TAGGGCATGCACGGAGAGGA 62.872 60.000 21.36 0.00 0.00 3.71
1914 9299 1.762522 ATAGGGCATGCACGGAGAGG 61.763 60.000 21.36 0.00 0.00 3.69
1915 9300 0.107456 AATAGGGCATGCACGGAGAG 59.893 55.000 21.36 0.00 0.00 3.20
1917 9302 0.464373 ACAATAGGGCATGCACGGAG 60.464 55.000 21.36 11.38 0.00 4.63
1919 9304 0.817013 AAACAATAGGGCATGCACGG 59.183 50.000 21.36 11.04 0.00 4.94
1920 9305 1.472082 TCAAACAATAGGGCATGCACG 59.528 47.619 21.36 5.41 0.00 5.34
1921 9306 3.591196 TTCAAACAATAGGGCATGCAC 57.409 42.857 21.36 17.78 0.00 4.57
1922 9307 3.055963 CCTTTCAAACAATAGGGCATGCA 60.056 43.478 21.36 0.00 0.00 3.96
1923 9308 3.195396 TCCTTTCAAACAATAGGGCATGC 59.805 43.478 9.90 9.90 0.00 4.06
1924 9309 5.105228 ACATCCTTTCAAACAATAGGGCATG 60.105 40.000 0.00 0.00 0.00 4.06
1927 9312 4.462483 TCACATCCTTTCAAACAATAGGGC 59.538 41.667 0.00 0.00 0.00 5.19
1930 9315 6.857964 GTGTGTCACATCCTTTCAAACAATAG 59.142 38.462 9.31 0.00 34.08 1.73
1931 9316 6.238897 GGTGTGTCACATCCTTTCAAACAATA 60.239 38.462 9.31 0.00 35.86 1.90
1932 9317 5.451798 GGTGTGTCACATCCTTTCAAACAAT 60.452 40.000 9.31 0.00 35.86 2.71
1934 9319 3.380004 GGTGTGTCACATCCTTTCAAACA 59.620 43.478 9.31 0.00 35.86 2.83
1936 9321 3.625853 TGGTGTGTCACATCCTTTCAAA 58.374 40.909 13.70 0.00 35.86 2.69
1937 9322 3.289407 TGGTGTGTCACATCCTTTCAA 57.711 42.857 13.70 0.00 35.86 2.69
1938 9323 3.507162 ATGGTGTGTCACATCCTTTCA 57.493 42.857 13.70 4.60 35.86 2.69
1939 9324 4.853924 AAATGGTGTGTCACATCCTTTC 57.146 40.909 13.70 0.00 35.86 2.62
1940 9325 4.648762 TGAAAATGGTGTGTCACATCCTTT 59.351 37.500 13.70 12.88 35.86 3.11
1941 9326 4.214310 TGAAAATGGTGTGTCACATCCTT 58.786 39.130 13.70 7.33 35.86 3.36
1942 9327 3.831323 TGAAAATGGTGTGTCACATCCT 58.169 40.909 13.70 0.62 35.86 3.24
1943 9328 4.582701 TTGAAAATGGTGTGTCACATCC 57.417 40.909 13.70 14.04 35.86 3.51
1947 9332 3.494251 GCCAATTGAAAATGGTGTGTCAC 59.506 43.478 7.12 0.00 39.00 3.67
1949 9334 3.066380 GGCCAATTGAAAATGGTGTGTC 58.934 45.455 7.12 0.00 39.00 3.67
1951 9336 3.123157 TGGCCAATTGAAAATGGTGTG 57.877 42.857 0.61 0.00 39.00 3.82
1952 9337 3.853355 TTGGCCAATTGAAAATGGTGT 57.147 38.095 16.05 0.00 39.00 4.16
1954 9339 4.790937 ACTTTTGGCCAATTGAAAATGGT 58.209 34.783 21.26 2.53 39.00 3.55
1955 9340 5.771153 AACTTTTGGCCAATTGAAAATGG 57.229 34.783 21.26 1.87 39.80 3.16
1956 9341 5.459434 GCAAACTTTTGGCCAATTGAAAATG 59.541 36.000 26.41 17.37 38.57 2.32
1957 9342 5.126707 TGCAAACTTTTGGCCAATTGAAAAT 59.873 32.000 26.41 4.89 38.57 1.82
1958 9343 4.460382 TGCAAACTTTTGGCCAATTGAAAA 59.540 33.333 26.41 14.74 38.57 2.29
1960 9345 3.376546 GTGCAAACTTTTGGCCAATTGAA 59.623 39.130 26.41 17.35 38.57 2.69
1961 9346 2.941720 GTGCAAACTTTTGGCCAATTGA 59.058 40.909 26.41 13.35 38.57 2.57
1962 9347 2.944349 AGTGCAAACTTTTGGCCAATTG 59.056 40.909 21.26 20.80 38.57 2.32
1963 9348 3.280197 AGTGCAAACTTTTGGCCAATT 57.720 38.095 21.26 8.15 38.57 2.32
1964 9349 3.280197 AAGTGCAAACTTTTGGCCAAT 57.720 38.095 21.26 0.42 38.57 3.16
1965 9350 2.777832 AAGTGCAAACTTTTGGCCAA 57.222 40.000 16.05 16.05 38.57 4.52
1966 9351 2.159028 GGTAAGTGCAAACTTTTGGCCA 60.159 45.455 0.00 0.00 38.57 5.36
1967 9352 2.479837 GGTAAGTGCAAACTTTTGGCC 58.520 47.619 0.00 0.00 38.57 5.36
1968 9353 2.479837 GGGTAAGTGCAAACTTTTGGC 58.520 47.619 3.95 0.00 38.57 4.52
1971 9356 2.028876 AGCGGGTAAGTGCAAACTTTT 58.971 42.857 0.00 0.00 0.00 2.27
1972 9357 1.607148 GAGCGGGTAAGTGCAAACTTT 59.393 47.619 0.00 0.00 0.00 2.66
1973 9358 1.202770 AGAGCGGGTAAGTGCAAACTT 60.203 47.619 0.00 0.00 0.00 2.66
1975 9360 2.088950 TAGAGCGGGTAAGTGCAAAC 57.911 50.000 0.00 0.00 0.00 2.93
1979 9364 2.159085 AGAACATAGAGCGGGTAAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
1980 9365 3.802948 AGAACATAGAGCGGGTAAGTG 57.197 47.619 0.00 0.00 0.00 3.16
1981 9366 3.181489 CGAAGAACATAGAGCGGGTAAGT 60.181 47.826 0.00 0.00 0.00 2.24
1982 9367 3.372954 CGAAGAACATAGAGCGGGTAAG 58.627 50.000 0.00 0.00 0.00 2.34
1983 9368 2.100252 CCGAAGAACATAGAGCGGGTAA 59.900 50.000 0.00 0.00 35.42 2.85
1984 9369 1.679680 CCGAAGAACATAGAGCGGGTA 59.320 52.381 0.00 0.00 35.42 3.69
1985 9370 0.460311 CCGAAGAACATAGAGCGGGT 59.540 55.000 0.00 0.00 35.42 5.28
1986 9371 0.460311 ACCGAAGAACATAGAGCGGG 59.540 55.000 0.00 0.00 42.76 6.13
1987 9372 1.134367 TGACCGAAGAACATAGAGCGG 59.866 52.381 0.00 0.00 43.95 5.52
1988 9373 2.455032 CTGACCGAAGAACATAGAGCG 58.545 52.381 0.00 0.00 0.00 5.03
1989 9374 2.482142 CCCTGACCGAAGAACATAGAGC 60.482 54.545 0.00 0.00 0.00 4.09
1990 9375 2.761208 ACCCTGACCGAAGAACATAGAG 59.239 50.000 0.00 0.00 0.00 2.43
1991 9376 2.758979 GACCCTGACCGAAGAACATAGA 59.241 50.000 0.00 0.00 0.00 1.98
1992 9377 2.496070 TGACCCTGACCGAAGAACATAG 59.504 50.000 0.00 0.00 0.00 2.23
1994 9379 1.002087 GTGACCCTGACCGAAGAACAT 59.998 52.381 0.00 0.00 0.00 2.71
1995 9380 0.391597 GTGACCCTGACCGAAGAACA 59.608 55.000 0.00 0.00 0.00 3.18
1996 9381 0.320508 GGTGACCCTGACCGAAGAAC 60.321 60.000 0.00 0.00 0.00 3.01
1997 9382 0.761323 TGGTGACCCTGACCGAAGAA 60.761 55.000 0.00 0.00 36.12 2.52
1998 9383 1.152419 TGGTGACCCTGACCGAAGA 60.152 57.895 0.00 0.00 36.12 2.87
2001 9386 0.178955 TTAGTGGTGACCCTGACCGA 60.179 55.000 0.00 0.00 36.12 4.69
2002 9387 0.037605 GTTAGTGGTGACCCTGACCG 60.038 60.000 0.00 0.00 36.12 4.79
2003 9388 1.053424 TGTTAGTGGTGACCCTGACC 58.947 55.000 0.00 0.00 0.00 4.02
2299 9684 1.388837 GGTGGGTTGCTTGACGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
2300 9685 1.826487 GGTGGGTTGCTTGACGGTT 60.826 57.895 0.00 0.00 0.00 4.44
2301 9686 2.203294 GGTGGGTTGCTTGACGGT 60.203 61.111 0.00 0.00 0.00 4.83
2302 9687 1.966451 GAGGTGGGTTGCTTGACGG 60.966 63.158 0.00 0.00 0.00 4.79
2303 9688 2.317609 CGAGGTGGGTTGCTTGACG 61.318 63.158 0.00 0.00 0.00 4.35
2304 9689 0.818040 AACGAGGTGGGTTGCTTGAC 60.818 55.000 0.00 0.00 0.00 3.18
2362 9901 2.221055 CCACAAGACGTCACAGCTTTAC 59.779 50.000 19.50 0.00 0.00 2.01
2364 9903 1.299541 CCACAAGACGTCACAGCTTT 58.700 50.000 19.50 0.00 0.00 3.51
2368 9907 0.104120 TCCACCACAAGACGTCACAG 59.896 55.000 19.50 9.29 0.00 3.66
2389 9928 7.497579 TGACATCTCTACTAGAGTTGCTCTAAG 59.502 40.741 18.43 3.73 42.79 2.18
2426 9965 7.689812 GCAATGCGCTCTATATATGTTACAAAG 59.310 37.037 9.73 0.00 37.77 2.77
2454 9993 7.660112 TCGCCTCGACAACCTTTATATTATTA 58.340 34.615 0.00 0.00 0.00 0.98
2473 10012 0.445436 CTGAGTTTGTGCATCGCCTC 59.555 55.000 0.00 0.00 0.00 4.70
2504 10043 8.842280 TGTTTGAAAGGAATTTACGTAGATTGT 58.158 29.630 15.39 0.99 0.00 2.71
2513 10052 6.454795 TGCATCCTGTTTGAAAGGAATTTAC 58.545 36.000 0.00 0.00 46.76 2.01
2514 10053 6.662865 TGCATCCTGTTTGAAAGGAATTTA 57.337 33.333 0.00 0.00 46.76 1.40
2515 10054 5.549742 TGCATCCTGTTTGAAAGGAATTT 57.450 34.783 0.00 0.00 46.76 1.82
2520 10059 4.015084 AGAGATGCATCCTGTTTGAAAGG 58.985 43.478 23.06 0.00 36.02 3.11
2529 10068 3.487120 TCCAATGAGAGATGCATCCTG 57.513 47.619 23.06 10.49 0.00 3.86
2545 10084 5.503634 TTGAGGAAGAATCAGTGATCCAA 57.496 39.130 5.98 0.66 32.47 3.53
2552 10091 6.838401 AGGGATAATTGAGGAAGAATCAGT 57.162 37.500 0.00 0.00 0.00 3.41
2553 10092 8.435982 ACTTAGGGATAATTGAGGAAGAATCAG 58.564 37.037 0.00 0.00 0.00 2.90
2578 10118 4.857037 GTGAACCAAGTGTGTTCTTTTGAC 59.143 41.667 11.44 0.00 42.04 3.18
2601 10141 4.667262 TCGGTGTTTTTGAATGTGTTCTG 58.333 39.130 0.00 0.00 35.33 3.02
2604 10144 5.067153 TGAGATCGGTGTTTTTGAATGTGTT 59.933 36.000 0.00 0.00 0.00 3.32
2661 10201 6.277918 AGTTATTTTATGTACGTAAGCCGC 57.722 37.500 7.56 0.63 45.62 6.53
2720 10261 1.993370 GACGATGTTTTGGTCGAGGAG 59.007 52.381 1.49 0.00 40.11 3.69
2722 10263 1.790755 TGACGATGTTTTGGTCGAGG 58.209 50.000 1.49 0.00 40.11 4.63
2726 10267 2.225727 GGGACTTGACGATGTTTTGGTC 59.774 50.000 0.00 0.00 0.00 4.02
2731 10272 3.317993 CCTTTTGGGACTTGACGATGTTT 59.682 43.478 0.00 0.00 37.23 2.83
2732 10273 2.884639 CCTTTTGGGACTTGACGATGTT 59.115 45.455 0.00 0.00 37.23 2.71
2761 10303 0.474660 AGGAGAAGCAACAGGACCCT 60.475 55.000 0.00 0.00 0.00 4.34
2764 10306 0.318762 ACGAGGAGAAGCAACAGGAC 59.681 55.000 0.00 0.00 0.00 3.85
2765 10307 0.603569 GACGAGGAGAAGCAACAGGA 59.396 55.000 0.00 0.00 0.00 3.86
2767 10309 0.390472 GGGACGAGGAGAAGCAACAG 60.390 60.000 0.00 0.00 0.00 3.16
2768 10310 1.671742 GGGACGAGGAGAAGCAACA 59.328 57.895 0.00 0.00 0.00 3.33
2769 10311 1.079057 GGGGACGAGGAGAAGCAAC 60.079 63.158 0.00 0.00 0.00 4.17
2770 10312 3.388841 GGGGACGAGGAGAAGCAA 58.611 61.111 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.