Multiple sequence alignment - TraesCS2D01G430800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G430800 chr2D 100.000 3752 0 0 1 3752 543317136 543320887 0.000000e+00 6929.0
1 TraesCS2D01G430800 chr2D 97.872 47 1 0 667 713 543317743 543317789 8.640000e-12 82.4
2 TraesCS2D01G430800 chr2D 97.872 47 1 0 608 654 543317802 543317848 8.640000e-12 82.4
3 TraesCS2D01G430800 chr2B 92.455 3075 151 45 1 3033 648480130 648483165 0.000000e+00 4318.0
4 TraesCS2D01G430800 chr2B 92.576 229 12 5 3526 3752 648483842 648484067 1.300000e-84 324.0
5 TraesCS2D01G430800 chr2B 96.667 60 2 0 608 667 648480792 648480851 2.380000e-17 100.0
6 TraesCS2D01G430800 chr2B 97.872 47 1 0 667 713 648480733 648480779 8.640000e-12 82.4
7 TraesCS2D01G430800 chr2A 95.367 1036 31 8 2015 3033 686171704 686172739 0.000000e+00 1631.0
8 TraesCS2D01G430800 chr2A 94.608 612 21 2 1371 1981 686170990 686171590 0.000000e+00 937.0
9 TraesCS2D01G430800 chr2A 90.496 726 40 19 1 713 686169430 686170139 0.000000e+00 931.0
10 TraesCS2D01G430800 chr2A 86.978 814 46 26 608 1402 686170211 686170983 0.000000e+00 861.0
11 TraesCS2D01G430800 chr2A 92.952 227 15 1 3526 3752 686173418 686173643 2.790000e-86 329.0
12 TraesCS2D01G430800 chr2A 97.170 106 3 0 608 713 686170093 686170198 2.980000e-41 180.0
13 TraesCS2D01G430800 chr2A 96.226 106 4 0 608 713 686170152 686170257 1.390000e-39 174.0
14 TraesCS2D01G430800 chr2A 97.872 47 1 0 608 654 686170270 686170316 8.640000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G430800 chr2D 543317136 543320887 3751 False 2364.600 6929 98.581333 1 3752 3 chr2D.!!$F1 3751
1 TraesCS2D01G430800 chr2B 648480130 648484067 3937 False 1206.100 4318 94.892500 1 3752 4 chr2B.!!$F1 3751
2 TraesCS2D01G430800 chr2A 686169430 686173643 4213 False 640.675 1631 93.958625 1 3752 8 chr2A.!!$F1 3751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 1059 0.938713 TTCAACGTACACCTTTGGCG 59.061 50.0 0.0 0.0 0.00 5.69 F
1038 1246 0.178970 GGAGATCAAGGCATGGGCAT 60.179 55.0 0.0 0.0 43.71 4.40 F
1992 2242 0.451783 ACCCGCAAATCGCAATTCTC 59.548 50.0 0.0 0.0 42.60 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2242 0.101399 CTACCCTAGTGCAGCGAGTG 59.899 60.0 0.0 0.0 0.0 3.51 R
2457 2792 0.669077 GCTCGACGATGTCCATAGGT 59.331 55.0 0.0 0.0 0.0 3.08 R
3423 4019 0.247185 CTCCGGGTTTGGCGTTAGTA 59.753 55.0 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.615392 GGGCAGATTGTCACAAGCTTT 59.385 47.619 5.30 0.00 0.00 3.51
63 64 2.037251 ACTGCCTCAACTCGCTTTCTTA 59.963 45.455 0.00 0.00 0.00 2.10
91 92 8.901016 GAGAATACTCTTGTGGTCAACAACCTG 61.901 44.444 0.00 0.00 43.22 4.00
129 130 2.419667 CTCACCGTGGTTTCCGTTAAT 58.580 47.619 0.00 0.00 0.00 1.40
137 138 2.554893 TGGTTTCCGTTAATCCACAAGC 59.445 45.455 0.00 0.00 32.94 4.01
149 153 4.574599 ATCCACAAGCACTTTCAGAAAC 57.425 40.909 0.00 0.00 0.00 2.78
182 190 9.490379 TCTTCTACTCTTTTCACTTGGTTAATC 57.510 33.333 0.00 0.00 0.00 1.75
183 191 9.495572 CTTCTACTCTTTTCACTTGGTTAATCT 57.504 33.333 0.00 0.00 0.00 2.40
184 192 8.833231 TCTACTCTTTTCACTTGGTTAATCTG 57.167 34.615 0.00 0.00 0.00 2.90
310 322 3.517296 TTCATTGGTTAGCTTGGTCCA 57.483 42.857 0.00 0.00 0.00 4.02
338 351 1.947456 GGTTTCAACGCTCTCTTTGGT 59.053 47.619 0.00 0.00 0.00 3.67
352 365 1.860950 CTTTGGTGATCGATGTAGGCG 59.139 52.381 0.54 0.00 0.00 5.52
431 444 3.610040 AATTGACCGTGTGCTCTCATA 57.390 42.857 0.00 0.00 0.00 2.15
485 502 2.860628 CGCGACGTTAGATGCAGCC 61.861 63.158 0.00 0.00 0.00 4.85
595 612 2.290705 CGTATCTCCCACCAACCCTTTT 60.291 50.000 0.00 0.00 0.00 2.27
596 613 2.604912 ATCTCCCACCAACCCTTTTC 57.395 50.000 0.00 0.00 0.00 2.29
657 789 5.105716 TCCTCTATATTTGCGATGACTAGCC 60.106 44.000 0.00 0.00 0.00 3.93
867 1059 0.938713 TTCAACGTACACCTTTGGCG 59.061 50.000 0.00 0.00 0.00 5.69
877 1069 5.519566 CGTACACCTTTGGCGTAATTATACA 59.480 40.000 0.00 0.00 32.02 2.29
878 1070 6.291955 CGTACACCTTTGGCGTAATTATACAG 60.292 42.308 0.00 0.00 32.02 2.74
879 1071 5.493809 ACACCTTTGGCGTAATTATACAGT 58.506 37.500 0.00 0.00 32.02 3.55
880 1072 6.642430 ACACCTTTGGCGTAATTATACAGTA 58.358 36.000 0.00 0.00 32.02 2.74
881 1073 6.536224 ACACCTTTGGCGTAATTATACAGTAC 59.464 38.462 0.00 0.00 32.02 2.73
882 1074 6.759827 CACCTTTGGCGTAATTATACAGTACT 59.240 38.462 0.00 0.00 32.02 2.73
883 1075 7.922278 CACCTTTGGCGTAATTATACAGTACTA 59.078 37.037 0.00 0.00 32.02 1.82
884 1076 8.477256 ACCTTTGGCGTAATTATACAGTACTAA 58.523 33.333 0.00 0.00 32.02 2.24
885 1077 9.316730 CCTTTGGCGTAATTATACAGTACTAAA 57.683 33.333 0.00 0.00 32.02 1.85
925 1121 5.105432 TGTCAGAAGTCTCCTTGATCTGATG 60.105 44.000 7.01 0.00 33.90 3.07
994 1190 4.760047 CAGACGTGGGGGAAGCCG 62.760 72.222 0.00 0.00 0.00 5.52
1038 1246 0.178970 GGAGATCAAGGCATGGGCAT 60.179 55.000 0.00 0.00 43.71 4.40
1084 1292 3.478274 CAGGAGCAGGAGGAGGGC 61.478 72.222 0.00 0.00 0.00 5.19
1175 1383 1.144057 CTATCCCGCACCTCACCAC 59.856 63.158 0.00 0.00 0.00 4.16
1228 1436 4.082190 TCTCCAACAACAATCTCGAGGTAG 60.082 45.833 13.56 5.00 0.00 3.18
1232 1440 4.189639 ACAACAATCTCGAGGTAGGTTC 57.810 45.455 13.56 0.00 0.00 3.62
1264 1472 9.494479 TCTTCTTTCATAATAACTACGTACACG 57.506 33.333 0.00 0.00 46.33 4.49
1294 1502 3.447918 TTTCCTTCGTCGACAGTTCTT 57.552 42.857 17.16 0.00 0.00 2.52
1295 1503 2.417339 TCCTTCGTCGACAGTTCTTG 57.583 50.000 17.16 0.00 0.00 3.02
1343 1555 9.409918 GGGATAGTCTAGTATATACTTGATGCA 57.590 37.037 23.77 14.95 39.51 3.96
1348 1560 9.083422 AGTCTAGTATATACTTGATGCATGTGT 57.917 33.333 23.77 2.28 39.51 3.72
1349 1561 9.133627 GTCTAGTATATACTTGATGCATGTGTG 57.866 37.037 23.77 0.00 39.51 3.82
1351 1563 9.696917 CTAGTATATACTTGATGCATGTGTGAA 57.303 33.333 20.21 0.00 37.73 3.18
1354 1566 9.045223 GTATATACTTGATGCATGTGTGAAGAA 57.955 33.333 2.46 0.00 0.00 2.52
1355 1567 6.822667 ATACTTGATGCATGTGTGAAGAAA 57.177 33.333 2.46 0.00 0.00 2.52
1357 1569 5.904941 ACTTGATGCATGTGTGAAGAAAAA 58.095 33.333 2.46 0.00 0.00 1.94
1358 1570 5.981315 ACTTGATGCATGTGTGAAGAAAAAG 59.019 36.000 2.46 0.00 0.00 2.27
1361 1573 6.571605 TGATGCATGTGTGAAGAAAAAGAAA 58.428 32.000 2.46 0.00 0.00 2.52
1362 1574 6.698329 TGATGCATGTGTGAAGAAAAAGAAAG 59.302 34.615 2.46 0.00 0.00 2.62
1363 1575 5.964758 TGCATGTGTGAAGAAAAAGAAAGT 58.035 33.333 0.00 0.00 0.00 2.66
1364 1576 7.094508 TGCATGTGTGAAGAAAAAGAAAGTA 57.905 32.000 0.00 0.00 0.00 2.24
1366 1578 7.862372 TGCATGTGTGAAGAAAAAGAAAGTATC 59.138 33.333 0.00 0.00 0.00 2.24
1368 1580 6.954944 TGTGTGAAGAAAAAGAAAGTATCGG 58.045 36.000 0.00 0.00 0.00 4.18
1369 1581 5.851703 GTGTGAAGAAAAAGAAAGTATCGGC 59.148 40.000 0.00 0.00 0.00 5.54
1612 1861 2.328235 GCTCCAGCACTGCCATATG 58.672 57.895 0.00 0.00 41.59 1.78
1735 1985 2.288395 GCATTTTTCCTGGGGATATGCG 60.288 50.000 0.00 0.00 34.38 4.73
1938 2188 1.920325 CCTGCTCCAGTCCCTTCCA 60.920 63.158 0.00 0.00 0.00 3.53
1992 2242 0.451783 ACCCGCAAATCGCAATTCTC 59.548 50.000 0.00 0.00 42.60 2.87
1997 2247 2.434761 GCAAATCGCAATTCTCACTCG 58.565 47.619 0.00 0.00 41.79 4.18
2046 2381 2.940410 CCTTTAACCTGTGTGACGTTGT 59.060 45.455 0.00 0.00 0.00 3.32
2082 2417 1.078143 GGAGGAGCTGAACGCCAAT 60.078 57.895 0.00 0.00 41.55 3.16
2244 2579 4.722700 AACTGCATCCGCGCCCTT 62.723 61.111 0.00 0.00 42.97 3.95
2457 2792 2.847234 AACCCACTCGTCTGCCCA 60.847 61.111 0.00 0.00 0.00 5.36
2592 2927 1.045407 AGTACAACACCTTCTCCGCA 58.955 50.000 0.00 0.00 0.00 5.69
2785 3120 5.535030 ACTTTGTAAGTGGTTTGATCCTTCC 59.465 40.000 0.00 0.00 41.01 3.46
2913 3254 9.802039 TTGATGTACATAGAAACTAAAAAGGGT 57.198 29.630 8.71 0.00 0.00 4.34
2920 3261 7.926018 ACATAGAAACTAAAAAGGGTGCTTTTG 59.074 33.333 0.00 0.00 36.74 2.44
2986 3335 5.695851 AAGTGCAGTGGATTTTGAGTAAG 57.304 39.130 0.00 0.00 0.00 2.34
2997 3347 8.451748 GTGGATTTTGAGTAAGTTGTAATCCTC 58.548 37.037 0.00 0.00 39.97 3.71
3016 3366 8.563123 AATCCTCTATATGTTGAATGAGCATG 57.437 34.615 0.00 0.00 0.00 4.06
3033 3429 3.571401 AGCATGAAGTTTGAGGTTTGGAG 59.429 43.478 0.00 0.00 0.00 3.86
3058 3454 2.650322 TCCAGTTCTGTTTGGTCAACC 58.350 47.619 0.00 0.00 35.89 3.77
3059 3455 2.025793 TCCAGTTCTGTTTGGTCAACCA 60.026 45.455 0.00 0.00 45.94 3.67
3100 3512 9.959721 AAGATAACAACACAGTCCAATATTACT 57.040 29.630 0.00 0.00 0.00 2.24
3108 3520 5.521735 CACAGTCCAATATTACTGCTCACTC 59.478 44.000 15.36 0.00 45.65 3.51
3109 3521 4.742167 CAGTCCAATATTACTGCTCACTCG 59.258 45.833 5.62 0.00 36.96 4.18
3110 3522 3.491267 GTCCAATATTACTGCTCACTCGC 59.509 47.826 0.00 0.00 0.00 5.03
3111 3523 3.384789 TCCAATATTACTGCTCACTCGCT 59.615 43.478 0.00 0.00 0.00 4.93
3113 3525 4.025396 CCAATATTACTGCTCACTCGCTTG 60.025 45.833 0.00 0.00 0.00 4.01
3115 3527 3.533606 ATTACTGCTCACTCGCTTGAT 57.466 42.857 0.00 0.00 0.00 2.57
3116 3528 3.319137 TTACTGCTCACTCGCTTGATT 57.681 42.857 0.00 0.00 0.00 2.57
3124 3537 4.409570 CTCACTCGCTTGATTGAAAATGG 58.590 43.478 0.00 0.00 31.76 3.16
3125 3538 4.071423 TCACTCGCTTGATTGAAAATGGA 58.929 39.130 0.00 0.00 29.37 3.41
3157 3570 9.646427 CTATTCTCTATCCTACAATGTAAAGCC 57.354 37.037 0.00 0.00 0.00 4.35
3175 3767 2.018542 CCTCCATGCTGGCAAAAATG 57.981 50.000 0.00 0.00 37.47 2.32
3176 3769 1.551430 CCTCCATGCTGGCAAAAATGA 59.449 47.619 0.00 0.00 37.47 2.57
3182 3775 1.483827 TGCTGGCAAAAATGACACCAA 59.516 42.857 0.00 0.00 0.00 3.67
3188 3781 5.374921 TGGCAAAAATGACACCAAATCATT 58.625 33.333 0.00 0.00 46.40 2.57
3189 3782 5.238868 TGGCAAAAATGACACCAAATCATTG 59.761 36.000 1.21 0.00 44.24 2.82
3200 3794 6.243900 ACACCAAATCATTGAGACTGAAGAT 58.756 36.000 0.00 0.00 38.94 2.40
3212 3806 8.768957 TTGAGACTGAAGATGTAAATTCTGAG 57.231 34.615 0.00 0.00 0.00 3.35
3221 3815 8.489990 AAGATGTAAATTCTGAGTGATCACTG 57.510 34.615 32.50 18.88 42.66 3.66
3246 3840 2.503331 CAACCCAGTGTACTCATTGCA 58.497 47.619 0.00 0.00 31.31 4.08
3247 3841 2.884012 CAACCCAGTGTACTCATTGCAA 59.116 45.455 0.00 0.00 31.31 4.08
3270 3864 5.171476 AGAACAGAATCAATCAGTACGGTG 58.829 41.667 0.00 0.00 0.00 4.94
3273 3867 2.236146 AGAATCAATCAGTACGGTGGCA 59.764 45.455 0.00 0.00 0.00 4.92
3283 3878 4.347453 CGGTGGCAAAGCAGTGGC 62.347 66.667 6.29 6.29 44.09 5.01
3294 3889 2.544726 GCAGTGGCTCCAACACTAC 58.455 57.895 0.00 0.00 46.76 2.73
3296 3891 1.800805 CAGTGGCTCCAACACTACAG 58.199 55.000 0.00 0.00 46.76 2.74
3307 3902 6.525578 TCCAACACTACAGTTATCGATTCT 57.474 37.500 1.71 0.00 0.00 2.40
3311 3906 8.188799 CCAACACTACAGTTATCGATTCTCTAA 58.811 37.037 1.71 0.00 0.00 2.10
3353 3948 7.383687 ACGAGTACATCCATTTCTTAAACAGA 58.616 34.615 0.00 0.00 0.00 3.41
3369 3964 7.862372 TCTTAAACAGAAACAATCAGTTGATGC 59.138 33.333 0.00 0.00 41.19 3.91
3375 3970 4.510038 AACAATCAGTTGATGCAAGACC 57.490 40.909 0.00 0.00 39.49 3.85
3376 3971 3.489355 ACAATCAGTTGATGCAAGACCA 58.511 40.909 0.00 0.00 38.71 4.02
3401 3997 4.792068 ACAGGTATCACAATAACATGGGG 58.208 43.478 0.00 0.00 0.00 4.96
3403 3999 2.890945 GGTATCACAATAACATGGGGCC 59.109 50.000 0.00 0.00 0.00 5.80
3414 4010 0.036199 CATGGGGCCAAAATGTGTGG 60.036 55.000 4.39 0.00 39.33 4.17
3422 4018 3.405823 CCAAAATGTGTGGCTCCAATT 57.594 42.857 0.00 0.00 0.00 2.32
3423 4019 3.742385 CCAAAATGTGTGGCTCCAATTT 58.258 40.909 0.00 0.00 0.00 1.82
3425 4021 4.690280 CCAAAATGTGTGGCTCCAATTTAC 59.310 41.667 0.00 0.00 0.00 2.01
3426 4022 5.511202 CCAAAATGTGTGGCTCCAATTTACT 60.511 40.000 0.00 0.00 0.00 2.24
3429 4025 5.897377 ATGTGTGGCTCCAATTTACTAAC 57.103 39.130 0.00 0.00 0.00 2.34
3432 4028 2.096980 GTGGCTCCAATTTACTAACGCC 59.903 50.000 0.00 0.00 36.85 5.68
3434 4030 2.750712 GGCTCCAATTTACTAACGCCAA 59.249 45.455 0.00 0.00 36.37 4.52
3435 4031 3.191791 GGCTCCAATTTACTAACGCCAAA 59.808 43.478 0.00 0.00 36.37 3.28
3436 4032 4.163552 GCTCCAATTTACTAACGCCAAAC 58.836 43.478 0.00 0.00 0.00 2.93
3437 4033 4.729595 CTCCAATTTACTAACGCCAAACC 58.270 43.478 0.00 0.00 0.00 3.27
3438 4034 3.506844 TCCAATTTACTAACGCCAAACCC 59.493 43.478 0.00 0.00 0.00 4.11
3440 4036 1.521580 TTTACTAACGCCAAACCCGG 58.478 50.000 0.00 0.00 0.00 5.73
3441 4037 0.683973 TTACTAACGCCAAACCCGGA 59.316 50.000 0.73 0.00 0.00 5.14
3442 4038 0.247185 TACTAACGCCAAACCCGGAG 59.753 55.000 0.73 0.00 0.00 4.63
3443 4039 1.294138 CTAACGCCAAACCCGGAGA 59.706 57.895 0.73 0.00 0.00 3.71
3444 4040 0.320946 CTAACGCCAAACCCGGAGAA 60.321 55.000 0.73 0.00 0.00 2.87
3446 4042 2.281208 CGCCAAACCCGGAGAACA 60.281 61.111 0.73 0.00 0.00 3.18
3448 4044 1.852067 CGCCAAACCCGGAGAACAAG 61.852 60.000 0.73 0.00 0.00 3.16
3450 4046 1.886655 GCCAAACCCGGAGAACAAGAT 60.887 52.381 0.73 0.00 0.00 2.40
3451 4047 2.617021 GCCAAACCCGGAGAACAAGATA 60.617 50.000 0.73 0.00 0.00 1.98
3453 4049 3.689649 CCAAACCCGGAGAACAAGATAAG 59.310 47.826 0.73 0.00 0.00 1.73
3455 4051 1.906574 ACCCGGAGAACAAGATAAGCA 59.093 47.619 0.73 0.00 0.00 3.91
3460 4056 4.695455 CCGGAGAACAAGATAAGCAAAGAA 59.305 41.667 0.00 0.00 0.00 2.52
3461 4057 5.181245 CCGGAGAACAAGATAAGCAAAGAAA 59.819 40.000 0.00 0.00 0.00 2.52
3463 4059 7.308435 CGGAGAACAAGATAAGCAAAGAAAAT 58.692 34.615 0.00 0.00 0.00 1.82
3464 4060 8.450964 CGGAGAACAAGATAAGCAAAGAAAATA 58.549 33.333 0.00 0.00 0.00 1.40
3473 4069 8.027189 AGATAAGCAAAGAAAATAAAACCGGAC 58.973 33.333 9.46 0.00 0.00 4.79
3474 4070 4.542735 AGCAAAGAAAATAAAACCGGACG 58.457 39.130 9.46 0.00 0.00 4.79
3475 4071 4.276431 AGCAAAGAAAATAAAACCGGACGA 59.724 37.500 9.46 0.00 0.00 4.20
3476 4072 5.048294 AGCAAAGAAAATAAAACCGGACGAT 60.048 36.000 9.46 0.00 0.00 3.73
3478 4074 6.144886 GCAAAGAAAATAAAACCGGACGATTT 59.855 34.615 9.46 5.50 0.00 2.17
3479 4075 7.618547 GCAAAGAAAATAAAACCGGACGATTTC 60.619 37.037 9.46 10.86 0.00 2.17
3480 4076 5.946298 AGAAAATAAAACCGGACGATTTCC 58.054 37.500 9.46 0.00 41.75 3.13
3483 4079 1.970092 AAAACCGGACGATTTCCACA 58.030 45.000 9.46 0.00 46.29 4.17
3484 4080 1.519408 AAACCGGACGATTTCCACAG 58.481 50.000 9.46 0.00 46.29 3.66
3487 4083 1.202722 ACCGGACGATTTCCACAGTTT 60.203 47.619 9.46 0.00 46.29 2.66
3488 4084 1.196808 CCGGACGATTTCCACAGTTTG 59.803 52.381 0.00 0.00 46.29 2.93
3489 4085 2.139917 CGGACGATTTCCACAGTTTGA 58.860 47.619 0.00 0.00 46.29 2.69
3491 4087 3.424829 CGGACGATTTCCACAGTTTGATG 60.425 47.826 0.00 0.00 46.29 3.07
3492 4088 3.751175 GGACGATTTCCACAGTTTGATGA 59.249 43.478 0.00 0.00 45.10 2.92
3493 4089 4.396166 GGACGATTTCCACAGTTTGATGAT 59.604 41.667 0.00 0.00 45.10 2.45
3494 4090 5.447818 GGACGATTTCCACAGTTTGATGATC 60.448 44.000 0.00 0.00 45.10 2.92
3495 4091 4.396166 ACGATTTCCACAGTTTGATGATCC 59.604 41.667 0.00 0.00 0.00 3.36
3496 4092 4.637534 CGATTTCCACAGTTTGATGATCCT 59.362 41.667 0.00 0.00 0.00 3.24
3497 4093 5.220739 CGATTTCCACAGTTTGATGATCCTC 60.221 44.000 0.00 0.00 0.00 3.71
3498 4094 4.639078 TTCCACAGTTTGATGATCCTCA 57.361 40.909 0.00 0.00 0.00 3.86
3499 4095 3.942829 TCCACAGTTTGATGATCCTCAC 58.057 45.455 0.00 0.00 0.00 3.51
3500 4096 3.327464 TCCACAGTTTGATGATCCTCACA 59.673 43.478 0.00 0.00 0.00 3.58
3501 4097 4.019051 TCCACAGTTTGATGATCCTCACAT 60.019 41.667 0.00 0.00 0.00 3.21
3502 4098 4.095932 CCACAGTTTGATGATCCTCACATG 59.904 45.833 0.00 3.12 0.00 3.21
3503 4099 4.698780 CACAGTTTGATGATCCTCACATGT 59.301 41.667 0.00 0.00 0.00 3.21
3504 4100 5.876460 CACAGTTTGATGATCCTCACATGTA 59.124 40.000 0.00 0.00 0.00 2.29
3505 4101 6.372381 CACAGTTTGATGATCCTCACATGTAA 59.628 38.462 0.00 0.00 0.00 2.41
3506 4102 6.596888 ACAGTTTGATGATCCTCACATGTAAG 59.403 38.462 0.00 0.00 0.00 2.34
3507 4103 6.037940 CAGTTTGATGATCCTCACATGTAAGG 59.962 42.308 9.00 9.00 0.00 2.69
3508 4104 4.694760 TGATGATCCTCACATGTAAGGG 57.305 45.455 15.45 9.55 33.21 3.95
3509 4105 4.297768 TGATGATCCTCACATGTAAGGGA 58.702 43.478 15.45 14.33 33.21 4.20
3510 4106 4.346127 TGATGATCCTCACATGTAAGGGAG 59.654 45.833 15.45 9.36 33.21 4.30
3511 4107 3.041211 TGATCCTCACATGTAAGGGAGG 58.959 50.000 15.45 17.69 46.61 4.30
3515 4111 3.810310 CTCACATGTAAGGGAGGAGAC 57.190 52.381 0.00 0.00 0.00 3.36
3516 4112 3.099905 CTCACATGTAAGGGAGGAGACA 58.900 50.000 0.00 0.00 0.00 3.41
3517 4113 3.515502 CTCACATGTAAGGGAGGAGACAA 59.484 47.826 0.00 0.00 0.00 3.18
3518 4114 3.515502 TCACATGTAAGGGAGGAGACAAG 59.484 47.826 0.00 0.00 0.00 3.16
3519 4115 2.840651 ACATGTAAGGGAGGAGACAAGG 59.159 50.000 0.00 0.00 0.00 3.61
3520 4116 3.107601 CATGTAAGGGAGGAGACAAGGA 58.892 50.000 0.00 0.00 0.00 3.36
3521 4117 3.491766 TGTAAGGGAGGAGACAAGGAT 57.508 47.619 0.00 0.00 0.00 3.24
3522 4118 3.375699 TGTAAGGGAGGAGACAAGGATC 58.624 50.000 0.00 0.00 0.00 3.36
3523 4119 2.649742 AAGGGAGGAGACAAGGATCA 57.350 50.000 0.00 0.00 0.00 2.92
3524 4120 2.649742 AGGGAGGAGACAAGGATCAA 57.350 50.000 0.00 0.00 0.00 2.57
3525 4121 3.142579 AGGGAGGAGACAAGGATCAAT 57.857 47.619 0.00 0.00 0.00 2.57
3526 4122 4.286813 AGGGAGGAGACAAGGATCAATA 57.713 45.455 0.00 0.00 0.00 1.90
3527 4123 4.837218 AGGGAGGAGACAAGGATCAATAT 58.163 43.478 0.00 0.00 0.00 1.28
3528 4124 5.230759 AGGGAGGAGACAAGGATCAATATT 58.769 41.667 0.00 0.00 0.00 1.28
3529 4125 6.393897 AGGGAGGAGACAAGGATCAATATTA 58.606 40.000 0.00 0.00 0.00 0.98
3530 4126 7.028131 AGGGAGGAGACAAGGATCAATATTAT 58.972 38.462 0.00 0.00 0.00 1.28
3531 4127 7.519004 AGGGAGGAGACAAGGATCAATATTATT 59.481 37.037 0.00 0.00 0.00 1.40
3532 4128 7.826744 GGGAGGAGACAAGGATCAATATTATTC 59.173 40.741 0.00 0.00 0.00 1.75
3533 4129 8.601546 GGAGGAGACAAGGATCAATATTATTCT 58.398 37.037 0.00 0.00 0.00 2.40
3648 4244 3.808466 CTGCTCTATCCACAGCTTGTA 57.192 47.619 0.00 0.00 36.53 2.41
3652 4248 1.754803 TCTATCCACAGCTTGTACCGG 59.245 52.381 0.00 0.00 0.00 5.28
3681 4277 1.163554 GCTTCCAGTTTCTCAGCCAG 58.836 55.000 0.00 0.00 0.00 4.85
3724 4320 4.398319 CTTTCACCTCCAATGTTACCTGT 58.602 43.478 0.00 0.00 0.00 4.00
3735 4331 5.814705 CCAATGTTACCTGTTTGCAAAAAGA 59.185 36.000 27.67 11.29 0.00 2.52
3737 4333 7.655328 CCAATGTTACCTGTTTGCAAAAAGATA 59.345 33.333 27.67 14.90 0.00 1.98
3738 4334 9.206870 CAATGTTACCTGTTTGCAAAAAGATAT 57.793 29.630 27.67 15.90 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.546373 GCAGTACGTAACACAGGGTGAA 60.546 50.000 0.00 0.00 36.96 3.18
63 64 4.038763 TGTTGACCACAAGAGTATTCTCGT 59.961 41.667 0.00 0.00 44.65 4.18
91 92 2.265904 GCGACCACCTCCCCAAAAC 61.266 63.158 0.00 0.00 0.00 2.43
116 117 2.554893 GCTTGTGGATTAACGGAAACCA 59.445 45.455 0.00 0.00 37.64 3.67
129 130 2.687935 GGTTTCTGAAAGTGCTTGTGGA 59.312 45.455 2.48 0.00 33.76 4.02
137 138 7.269477 AGAAGAAGATTGGTTTCTGAAAGTG 57.731 36.000 2.48 0.00 35.20 3.16
149 153 8.502387 CAAGTGAAAAGAGTAGAAGAAGATTGG 58.498 37.037 0.00 0.00 0.00 3.16
338 351 0.387239 CATCGCGCCTACATCGATCA 60.387 55.000 0.00 0.00 40.48 2.92
431 444 3.181469 TGCGTGTTCTCCTGTAGTTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
595 612 5.531287 GGTGTGGCTTAAGAAGAAAGAAAGA 59.469 40.000 6.67 0.00 0.00 2.52
596 613 5.299279 TGGTGTGGCTTAAGAAGAAAGAAAG 59.701 40.000 6.67 0.00 0.00 2.62
657 789 3.003480 GGTGTGGCTTAAGCTAAGTCTG 58.997 50.000 25.88 0.00 40.91 3.51
707 839 0.737715 CTGCCGCTAAGTCCAGTCAC 60.738 60.000 0.00 0.00 0.00 3.67
877 1069 9.198475 ACACACCAGCTAGTATTATTTAGTACT 57.802 33.333 0.00 0.00 33.92 2.73
878 1070 9.460906 GACACACCAGCTAGTATTATTTAGTAC 57.539 37.037 0.00 0.00 0.00 2.73
879 1071 9.192642 TGACACACCAGCTAGTATTATTTAGTA 57.807 33.333 0.00 0.00 0.00 1.82
880 1072 8.074613 TGACACACCAGCTAGTATTATTTAGT 57.925 34.615 0.00 0.00 0.00 2.24
881 1073 8.414003 TCTGACACACCAGCTAGTATTATTTAG 58.586 37.037 0.00 0.00 34.28 1.85
882 1074 8.301252 TCTGACACACCAGCTAGTATTATTTA 57.699 34.615 0.00 0.00 34.28 1.40
883 1075 7.182817 TCTGACACACCAGCTAGTATTATTT 57.817 36.000 0.00 0.00 34.28 1.40
884 1076 6.791867 TCTGACACACCAGCTAGTATTATT 57.208 37.500 0.00 0.00 34.28 1.40
885 1077 6.381420 ACTTCTGACACACCAGCTAGTATTAT 59.619 38.462 0.00 0.00 34.28 1.28
886 1078 5.715279 ACTTCTGACACACCAGCTAGTATTA 59.285 40.000 0.00 0.00 34.28 0.98
887 1079 4.528596 ACTTCTGACACACCAGCTAGTATT 59.471 41.667 0.00 0.00 34.28 1.89
888 1080 4.090090 ACTTCTGACACACCAGCTAGTAT 58.910 43.478 0.00 0.00 34.28 2.12
891 1083 2.560542 AGACTTCTGACACACCAGCTAG 59.439 50.000 0.00 0.00 34.28 3.42
893 1085 1.342819 GAGACTTCTGACACACCAGCT 59.657 52.381 0.00 0.00 34.28 4.24
987 1183 1.227674 CCTCATGCTACCGGCTTCC 60.228 63.158 0.00 0.00 42.39 3.46
1038 1246 4.634703 ACGACGTTGGCATGCCCA 62.635 61.111 33.44 21.36 43.51 5.36
1062 1270 2.686470 CCTCCTGCTCCTGCTCCA 60.686 66.667 0.00 0.00 40.48 3.86
1065 1273 2.365370 CCTCCTCCTGCTCCTGCT 60.365 66.667 0.00 0.00 40.48 4.24
1095 1303 0.179936 CCTTCTCCTGGTCATGCTCC 59.820 60.000 0.00 0.00 0.00 4.70
1175 1383 2.040544 GTGATGTGGCCAAGGGACG 61.041 63.158 7.24 0.00 29.56 4.79
1238 1446 9.494479 CGTGTACGTAGTTATTATGAAAGAAGA 57.506 33.333 0.00 0.00 37.78 2.87
1257 1465 4.240096 AGGAAATGAAAGGTACGTGTACG 58.760 43.478 0.00 2.43 46.33 3.67
1258 1466 5.164022 CGAAGGAAATGAAAGGTACGTGTAC 60.164 44.000 0.00 1.49 35.40 2.90
1259 1467 4.925054 CGAAGGAAATGAAAGGTACGTGTA 59.075 41.667 0.00 0.00 0.00 2.90
1260 1468 3.744426 CGAAGGAAATGAAAGGTACGTGT 59.256 43.478 0.00 0.00 0.00 4.49
1261 1469 3.744426 ACGAAGGAAATGAAAGGTACGTG 59.256 43.478 0.00 0.00 0.00 4.49
1262 1470 3.992427 GACGAAGGAAATGAAAGGTACGT 59.008 43.478 0.00 0.00 0.00 3.57
1263 1471 3.060363 CGACGAAGGAAATGAAAGGTACG 59.940 47.826 0.00 0.00 0.00 3.67
1264 1472 4.091075 GTCGACGAAGGAAATGAAAGGTAC 59.909 45.833 0.00 0.00 0.00 3.34
1267 1475 3.064207 TGTCGACGAAGGAAATGAAAGG 58.936 45.455 11.62 0.00 0.00 3.11
1272 1480 3.318017 AGAACTGTCGACGAAGGAAATG 58.682 45.455 11.62 0.00 0.00 2.32
1274 1482 3.120792 CAAGAACTGTCGACGAAGGAAA 58.879 45.455 11.62 0.00 0.00 3.13
1275 1483 2.100252 ACAAGAACTGTCGACGAAGGAA 59.900 45.455 11.62 0.00 29.87 3.36
1317 1529 9.409918 TGCATCAAGTATATACTAGACTATCCC 57.590 37.037 15.74 0.70 34.99 3.85
1322 1534 9.083422 ACACATGCATCAAGTATATACTAGACT 57.917 33.333 15.74 0.00 34.99 3.24
1333 1545 6.631971 TTTTCTTCACACATGCATCAAGTA 57.368 33.333 0.00 0.00 0.00 2.24
1343 1555 7.584987 CCGATACTTTCTTTTTCTTCACACAT 58.415 34.615 0.00 0.00 0.00 3.21
1344 1556 6.512741 GCCGATACTTTCTTTTTCTTCACACA 60.513 38.462 0.00 0.00 0.00 3.72
1345 1557 5.851703 GCCGATACTTTCTTTTTCTTCACAC 59.148 40.000 0.00 0.00 0.00 3.82
1346 1558 5.763204 AGCCGATACTTTCTTTTTCTTCACA 59.237 36.000 0.00 0.00 0.00 3.58
1347 1559 6.242508 AGCCGATACTTTCTTTTTCTTCAC 57.757 37.500 0.00 0.00 0.00 3.18
1348 1560 7.331193 GTCTAGCCGATACTTTCTTTTTCTTCA 59.669 37.037 0.00 0.00 0.00 3.02
1349 1561 7.546316 AGTCTAGCCGATACTTTCTTTTTCTTC 59.454 37.037 0.00 0.00 0.00 2.87
1351 1563 6.937392 AGTCTAGCCGATACTTTCTTTTTCT 58.063 36.000 0.00 0.00 0.00 2.52
1354 1566 7.981102 AAAAGTCTAGCCGATACTTTCTTTT 57.019 32.000 6.89 0.00 41.36 2.27
1355 1567 7.878644 AGAAAAAGTCTAGCCGATACTTTCTTT 59.121 33.333 6.89 0.68 41.36 2.52
1357 1569 6.937392 AGAAAAAGTCTAGCCGATACTTTCT 58.063 36.000 6.89 0.25 41.36 2.52
1358 1570 7.117956 ACAAGAAAAAGTCTAGCCGATACTTTC 59.882 37.037 6.89 0.00 41.36 2.62
1361 1573 6.038997 ACAAGAAAAAGTCTAGCCGATACT 57.961 37.500 0.00 0.00 34.56 2.12
1362 1574 5.867716 TGACAAGAAAAAGTCTAGCCGATAC 59.132 40.000 0.00 0.00 34.56 2.24
1363 1575 6.032956 TGACAAGAAAAAGTCTAGCCGATA 57.967 37.500 0.00 0.00 34.56 2.92
1364 1576 4.894784 TGACAAGAAAAAGTCTAGCCGAT 58.105 39.130 0.00 0.00 34.56 4.18
1366 1578 4.058817 ACTGACAAGAAAAAGTCTAGCCG 58.941 43.478 0.00 0.00 34.56 5.52
1368 1580 5.683302 GCAAACTGACAAGAAAAAGTCTAGC 59.317 40.000 0.00 0.00 34.56 3.42
1369 1581 6.038714 AGGCAAACTGACAAGAAAAAGTCTAG 59.961 38.462 0.00 0.00 34.56 2.43
1517 1766 4.096984 GCCATGCTTATCTTGCACTTAACT 59.903 41.667 0.00 0.00 43.59 2.24
1612 1861 2.664402 AGATTGCCATGGGTGATACC 57.336 50.000 15.13 0.00 37.60 2.73
1735 1985 2.105128 CCTGTGACGATCGGAGGC 59.895 66.667 20.98 7.14 0.00 4.70
1739 1989 1.517257 GTGAGCCTGTGACGATCGG 60.517 63.158 20.98 0.82 0.00 4.18
1938 2188 1.153086 GCATTCCTCGATGGTGGCT 60.153 57.895 0.00 0.00 37.07 4.75
1992 2242 0.101399 CTACCCTAGTGCAGCGAGTG 59.899 60.000 0.00 0.00 0.00 3.51
1997 2247 1.555533 AGTTTCCTACCCTAGTGCAGC 59.444 52.381 0.00 0.00 0.00 5.25
2082 2417 0.884704 GCCTCGTCAGCTGGTTGAAA 60.885 55.000 15.13 0.00 0.00 2.69
2334 2669 2.752238 CGGAGCGAGGTGAGGAGT 60.752 66.667 0.00 0.00 0.00 3.85
2358 2693 2.654749 TGGAGTTGTAGCTGATGTCG 57.345 50.000 0.00 0.00 0.00 4.35
2445 2780 1.330655 CCATAGGTGGGCAGACGAGT 61.331 60.000 0.00 0.00 42.11 4.18
2457 2792 0.669077 GCTCGACGATGTCCATAGGT 59.331 55.000 0.00 0.00 0.00 3.08
2622 2957 1.620819 GAGAAGCCCTCAGAGTTGTCA 59.379 52.381 0.00 0.00 41.58 3.58
2785 3120 6.649973 CCTAGGAGCATTTCATCTGAATACTG 59.350 42.308 1.05 0.00 33.54 2.74
2911 3252 2.101415 ACAGAAGGAAAGCAAAAGCACC 59.899 45.455 0.00 0.00 0.00 5.01
2913 3254 5.789643 AATACAGAAGGAAAGCAAAAGCA 57.210 34.783 0.00 0.00 0.00 3.91
2953 3302 3.636300 TCCACTGCACTTACAAAAGCATT 59.364 39.130 0.00 0.00 36.05 3.56
2997 3347 9.447040 CAAACTTCATGCTCATTCAACATATAG 57.553 33.333 0.00 0.00 0.00 1.31
3012 3362 3.319122 ACTCCAAACCTCAAACTTCATGC 59.681 43.478 0.00 0.00 0.00 4.06
3016 3366 6.678878 GGAAATACTCCAAACCTCAAACTTC 58.321 40.000 0.00 0.00 44.67 3.01
3033 3429 6.206498 GTTGACCAAACAGAACTGGAAATAC 58.794 40.000 6.76 0.00 38.75 1.89
3074 3486 9.959721 AGTAATATTGGACTGTGTTGTTATCTT 57.040 29.630 0.00 0.00 0.00 2.40
3076 3488 8.122952 GCAGTAATATTGGACTGTGTTGTTATC 58.877 37.037 16.22 0.00 44.10 1.75
3079 3491 6.003950 AGCAGTAATATTGGACTGTGTTGTT 58.996 36.000 16.22 0.00 44.10 2.83
3081 3493 5.643348 TGAGCAGTAATATTGGACTGTGTTG 59.357 40.000 16.22 0.00 44.10 3.33
3100 3512 2.168326 TTCAATCAAGCGAGTGAGCA 57.832 45.000 0.00 0.00 46.10 4.26
3137 3550 5.903010 TGGAGGCTTTACATTGTAGGATAGA 59.097 40.000 0.00 0.00 0.00 1.98
3139 3552 6.533730 CATGGAGGCTTTACATTGTAGGATA 58.466 40.000 0.00 0.00 0.00 2.59
3146 3559 3.431922 CAGCATGGAGGCTTTACATTG 57.568 47.619 0.00 0.00 42.71 2.82
3169 3761 7.654520 CAGTCTCAATGATTTGGTGTCATTTTT 59.345 33.333 0.00 0.00 42.08 1.94
3174 3766 4.971939 TCAGTCTCAATGATTTGGTGTCA 58.028 39.130 0.00 0.00 33.44 3.58
3175 3767 5.702670 TCTTCAGTCTCAATGATTTGGTGTC 59.297 40.000 0.00 0.00 33.44 3.67
3176 3769 5.624159 TCTTCAGTCTCAATGATTTGGTGT 58.376 37.500 0.00 0.00 33.44 4.16
3188 3781 7.816513 CACTCAGAATTTACATCTTCAGTCTCA 59.183 37.037 0.00 0.00 0.00 3.27
3189 3782 8.031864 TCACTCAGAATTTACATCTTCAGTCTC 58.968 37.037 0.00 0.00 0.00 3.36
3200 3794 7.981789 GGATACAGTGATCACTCAGAATTTACA 59.018 37.037 25.58 2.26 40.20 2.41
3221 3815 4.755266 ATGAGTACACTGGGTTGGATAC 57.245 45.455 0.00 0.00 0.00 2.24
3235 3829 6.486253 TGATTCTGTTCTTGCAATGAGTAC 57.514 37.500 0.00 0.00 0.00 2.73
3246 3840 5.639506 CACCGTACTGATTGATTCTGTTCTT 59.360 40.000 0.00 0.00 37.63 2.52
3247 3841 5.171476 CACCGTACTGATTGATTCTGTTCT 58.829 41.667 0.00 0.00 37.63 3.01
3283 3878 6.565234 AGAATCGATAACTGTAGTGTTGGAG 58.435 40.000 0.00 0.00 0.00 3.86
3322 3917 6.235231 AGAAATGGATGTACTCGTATTGGT 57.765 37.500 0.00 0.00 0.00 3.67
3353 3948 4.341806 TGGTCTTGCATCAACTGATTGTTT 59.658 37.500 0.00 0.00 36.63 2.83
3369 3964 5.766150 TTGTGATACCTGTTTTGGTCTTG 57.234 39.130 0.00 0.00 41.22 3.02
3375 3970 7.035004 CCCATGTTATTGTGATACCTGTTTTG 58.965 38.462 0.00 0.00 0.00 2.44
3376 3971 6.154363 CCCCATGTTATTGTGATACCTGTTTT 59.846 38.462 0.00 0.00 0.00 2.43
3403 3999 5.540911 AGTAAATTGGAGCCACACATTTTG 58.459 37.500 3.71 0.00 0.00 2.44
3414 4010 4.163552 GTTTGGCGTTAGTAAATTGGAGC 58.836 43.478 0.00 0.00 0.00 4.70
3416 4012 3.506844 GGGTTTGGCGTTAGTAAATTGGA 59.493 43.478 0.00 0.00 0.00 3.53
3417 4013 3.671164 CGGGTTTGGCGTTAGTAAATTGG 60.671 47.826 0.00 0.00 0.00 3.16
3422 4018 0.683973 TCCGGGTTTGGCGTTAGTAA 59.316 50.000 0.00 0.00 0.00 2.24
3423 4019 0.247185 CTCCGGGTTTGGCGTTAGTA 59.753 55.000 0.00 0.00 0.00 1.82
3425 4021 0.320946 TTCTCCGGGTTTGGCGTTAG 60.321 55.000 0.00 0.00 0.00 2.34
3426 4022 0.603439 GTTCTCCGGGTTTGGCGTTA 60.603 55.000 0.00 0.00 0.00 3.18
3429 4025 1.852067 CTTGTTCTCCGGGTTTGGCG 61.852 60.000 0.00 0.00 0.00 5.69
3432 4028 3.127030 GCTTATCTTGTTCTCCGGGTTTG 59.873 47.826 0.00 0.00 0.00 2.93
3434 4030 2.304761 TGCTTATCTTGTTCTCCGGGTT 59.695 45.455 0.00 0.00 0.00 4.11
3435 4031 1.906574 TGCTTATCTTGTTCTCCGGGT 59.093 47.619 0.00 0.00 0.00 5.28
3436 4032 2.691409 TGCTTATCTTGTTCTCCGGG 57.309 50.000 0.00 0.00 0.00 5.73
3437 4033 4.253685 TCTTTGCTTATCTTGTTCTCCGG 58.746 43.478 0.00 0.00 0.00 5.14
3438 4034 5.862924 TTCTTTGCTTATCTTGTTCTCCG 57.137 39.130 0.00 0.00 0.00 4.63
3444 4040 9.191995 CGGTTTTATTTTCTTTGCTTATCTTGT 57.808 29.630 0.00 0.00 0.00 3.16
3446 4042 8.581578 TCCGGTTTTATTTTCTTTGCTTATCTT 58.418 29.630 0.00 0.00 0.00 2.40
3448 4044 7.007995 CGTCCGGTTTTATTTTCTTTGCTTATC 59.992 37.037 0.00 0.00 0.00 1.75
3450 4046 6.017275 TCGTCCGGTTTTATTTTCTTTGCTTA 60.017 34.615 0.00 0.00 0.00 3.09
3451 4047 4.979815 CGTCCGGTTTTATTTTCTTTGCTT 59.020 37.500 0.00 0.00 0.00 3.91
3453 4049 4.538917 TCGTCCGGTTTTATTTTCTTTGC 58.461 39.130 0.00 0.00 0.00 3.68
3455 4051 6.864685 GGAAATCGTCCGGTTTTATTTTCTTT 59.135 34.615 0.00 0.00 36.40 2.52
3473 4069 4.637534 AGGATCATCAAACTGTGGAAATCG 59.362 41.667 0.00 0.00 0.00 3.34
3474 4070 5.649395 TGAGGATCATCAAACTGTGGAAATC 59.351 40.000 7.78 0.00 42.56 2.17
3475 4071 5.573219 TGAGGATCATCAAACTGTGGAAAT 58.427 37.500 7.78 0.00 42.56 2.17
3476 4072 4.984295 TGAGGATCATCAAACTGTGGAAA 58.016 39.130 7.78 0.00 42.56 3.13
3491 4087 3.309296 TCCTCCCTTACATGTGAGGATC 58.691 50.000 32.48 0.00 46.41 3.36
3492 4088 3.421394 TCCTCCCTTACATGTGAGGAT 57.579 47.619 32.48 0.00 46.41 3.24
3494 4090 2.432510 GTCTCCTCCCTTACATGTGAGG 59.567 54.545 26.01 26.01 44.69 3.86
3495 4091 3.099905 TGTCTCCTCCCTTACATGTGAG 58.900 50.000 9.11 9.94 0.00 3.51
3496 4092 3.184382 TGTCTCCTCCCTTACATGTGA 57.816 47.619 9.11 0.00 0.00 3.58
3497 4093 3.369892 CCTTGTCTCCTCCCTTACATGTG 60.370 52.174 9.11 0.00 0.00 3.21
3498 4094 2.840651 CCTTGTCTCCTCCCTTACATGT 59.159 50.000 2.69 2.69 0.00 3.21
3499 4095 3.107601 TCCTTGTCTCCTCCCTTACATG 58.892 50.000 0.00 0.00 0.00 3.21
3500 4096 3.491766 TCCTTGTCTCCTCCCTTACAT 57.508 47.619 0.00 0.00 0.00 2.29
3501 4097 3.245984 TGATCCTTGTCTCCTCCCTTACA 60.246 47.826 0.00 0.00 0.00 2.41
3502 4098 3.375699 TGATCCTTGTCTCCTCCCTTAC 58.624 50.000 0.00 0.00 0.00 2.34
3503 4099 3.776731 TGATCCTTGTCTCCTCCCTTA 57.223 47.619 0.00 0.00 0.00 2.69
3504 4100 2.649742 TGATCCTTGTCTCCTCCCTT 57.350 50.000 0.00 0.00 0.00 3.95
3505 4101 2.649742 TTGATCCTTGTCTCCTCCCT 57.350 50.000 0.00 0.00 0.00 4.20
3506 4102 5.574970 AATATTGATCCTTGTCTCCTCCC 57.425 43.478 0.00 0.00 0.00 4.30
3507 4103 8.601546 AGAATAATATTGATCCTTGTCTCCTCC 58.398 37.037 0.00 0.00 0.00 4.30
3529 4125 9.860898 CTAAAGCTTTGCAAATAACCTAAGAAT 57.139 29.630 22.02 0.00 0.00 2.40
3530 4126 7.812669 GCTAAAGCTTTGCAAATAACCTAAGAA 59.187 33.333 22.02 0.00 38.21 2.52
3531 4127 7.312899 GCTAAAGCTTTGCAAATAACCTAAGA 58.687 34.615 22.02 0.00 38.21 2.10
3532 4128 7.511809 GCTAAAGCTTTGCAAATAACCTAAG 57.488 36.000 22.02 7.14 38.21 2.18
3562 4158 0.992802 CGCAGGTAGCTTCGTTCTTC 59.007 55.000 5.79 0.00 42.61 2.87
3595 4191 1.717937 GACTTGCATAGCCACAGCG 59.282 57.895 0.00 0.00 46.67 5.18
3652 4248 2.743928 CTGGAAGCAGCCGGTGTC 60.744 66.667 1.90 0.00 0.00 3.67
3658 4254 1.163554 CTGAGAAACTGGAAGCAGCC 58.836 55.000 0.00 0.00 37.60 4.85
3681 4277 1.609072 GGGAAACACAGCTGAAGAACC 59.391 52.381 23.35 16.61 0.00 3.62
3697 4293 1.786441 ACATTGGAGGTGAAAGGGGAA 59.214 47.619 0.00 0.00 0.00 3.97
3724 4320 9.206870 GTTTTGATCTGGATATCTTTTTGCAAA 57.793 29.630 8.05 8.05 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.