Multiple sequence alignment - TraesCS2D01G430400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G430400 chr2D 100.000 2198 0 0 1 2198 542777023 542779220 0.000000e+00 4060.0
1 TraesCS2D01G430400 chr2D 89.286 672 43 13 708 1362 542710277 542710936 0.000000e+00 815.0
2 TraesCS2D01G430400 chr2D 92.129 559 17 9 125 681 542689199 542689732 0.000000e+00 763.0
3 TraesCS2D01G430400 chr2D 86.323 446 29 18 759 1203 542543754 542544168 7.150000e-125 457.0
4 TraesCS2D01G430400 chr2D 88.056 360 24 7 839 1198 542328669 542329009 2.030000e-110 409.0
5 TraesCS2D01G430400 chr2D 94.355 124 7 0 1 124 542753645 542753768 8.010000e-45 191.0
6 TraesCS2D01G430400 chr2D 88.742 151 14 3 1379 1528 542544316 542544464 4.820000e-42 182.0
7 TraesCS2D01G430400 chr2B 86.250 1280 74 44 631 1831 647603499 647604755 0.000000e+00 1295.0
8 TraesCS2D01G430400 chr2B 85.393 445 38 12 812 1250 647450897 647451320 9.320000e-119 436.0
9 TraesCS2D01G430400 chr2B 92.308 117 8 1 1388 1504 647539527 647539642 4.850000e-37 165.0
10 TraesCS2D01G430400 chr2A 87.320 765 32 33 636 1371 685410314 685411042 0.000000e+00 815.0
11 TraesCS2D01G430400 chr2A 85.471 647 53 18 839 1459 685491402 685492033 8.560000e-179 636.0
12 TraesCS2D01G430400 chr2A 91.832 404 26 4 125 524 685409629 685410029 6.860000e-155 556.0
13 TraesCS2D01G430400 chr2A 88.732 426 12 10 1422 1831 685411054 685411459 2.540000e-134 488.0
14 TraesCS2D01G430400 chr2A 83.613 537 52 15 839 1362 685626706 685627219 2.550000e-129 472.0
15 TraesCS2D01G430400 chr2A 82.712 590 43 24 760 1334 685373446 685373991 9.190000e-129 470.0
16 TraesCS2D01G430400 chr2A 89.905 317 16 5 1531 1831 685492058 685492374 5.690000e-106 394.0
17 TraesCS2D01G430400 chr2A 92.982 114 5 3 1821 1934 722814002 722814112 1.750000e-36 163.0
18 TraesCS2D01G430400 chr2A 73.853 436 41 30 1446 1832 685627412 685627823 2.980000e-19 106.0
19 TraesCS2D01G430400 chr2A 91.781 73 6 0 1422 1494 685380981 685381053 3.860000e-18 102.0
20 TraesCS2D01G430400 chr2A 94.595 37 0 1 803 839 685491355 685491389 3.050000e-04 56.5
21 TraesCS2D01G430400 chr4B 99.398 166 0 1 2033 2198 500254344 500254180 1.280000e-77 300.0
22 TraesCS2D01G430400 chr1A 100.000 160 0 0 2039 2198 520766863 520766704 1.650000e-76 296.0
23 TraesCS2D01G430400 chr1A 100.000 159 0 0 2040 2198 149512080 149511922 5.930000e-76 294.0
24 TraesCS2D01G430400 chr1A 100.000 159 0 0 2040 2198 389872850 389873008 5.930000e-76 294.0
25 TraesCS2D01G430400 chrUn 98.125 160 2 1 2040 2198 307772982 307772823 5.980000e-71 278.0
26 TraesCS2D01G430400 chr3A 94.488 127 6 1 1 126 716191204 716191330 6.190000e-46 195.0
27 TraesCS2D01G430400 chr3A 95.283 106 4 1 1829 1934 645147872 645147768 1.350000e-37 167.0
28 TraesCS2D01G430400 chr3A 90.756 119 10 1 1 118 716132532 716132650 8.120000e-35 158.0
29 TraesCS2D01G430400 chr6B 97.248 109 2 1 2038 2146 4550982 4551089 1.340000e-42 183.0
30 TraesCS2D01G430400 chr6B 92.366 131 3 3 1 124 475733271 475733401 1.730000e-41 180.0
31 TraesCS2D01G430400 chr5D 96.226 106 3 1 1829 1934 72874006 72874110 2.900000e-39 172.0
32 TraesCS2D01G430400 chr5D 96.226 106 3 1 1829 1934 231640377 231640481 2.900000e-39 172.0
33 TraesCS2D01G430400 chr3D 95.327 107 5 0 1828 1934 101990416 101990310 1.040000e-38 171.0
34 TraesCS2D01G430400 chr4D 95.327 107 4 1 1828 1934 362254749 362254644 3.750000e-38 169.0
35 TraesCS2D01G430400 chr4D 94.737 38 2 0 2003 2040 39198953 39198916 2.360000e-05 60.2
36 TraesCS2D01G430400 chr7A 94.393 107 5 1 1828 1934 609519009 609518904 1.750000e-36 163.0
37 TraesCS2D01G430400 chr6A 93.636 110 6 1 1822 1931 563129281 563129389 1.750000e-36 163.0
38 TraesCS2D01G430400 chr4A 94.393 107 5 1 1828 1934 403385875 403385770 1.750000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G430400 chr2D 542777023 542779220 2197 False 4060.000000 4060 100.000000 1 2198 1 chr2D.!!$F5 2197
1 TraesCS2D01G430400 chr2D 542710277 542710936 659 False 815.000000 815 89.286000 708 1362 1 chr2D.!!$F3 654
2 TraesCS2D01G430400 chr2D 542689199 542689732 533 False 763.000000 763 92.129000 125 681 1 chr2D.!!$F2 556
3 TraesCS2D01G430400 chr2D 542543754 542544464 710 False 319.500000 457 87.532500 759 1528 2 chr2D.!!$F6 769
4 TraesCS2D01G430400 chr2B 647603499 647604755 1256 False 1295.000000 1295 86.250000 631 1831 1 chr2B.!!$F3 1200
5 TraesCS2D01G430400 chr2A 685409629 685411459 1830 False 619.666667 815 89.294667 125 1831 3 chr2A.!!$F4 1706
6 TraesCS2D01G430400 chr2A 685373446 685373991 545 False 470.000000 470 82.712000 760 1334 1 chr2A.!!$F1 574
7 TraesCS2D01G430400 chr2A 685491355 685492374 1019 False 362.166667 636 89.990333 803 1831 3 chr2A.!!$F5 1028
8 TraesCS2D01G430400 chr2A 685626706 685627823 1117 False 289.000000 472 78.733000 839 1832 2 chr2A.!!$F6 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.394352 AGACGTGGAATGGAATGGCC 60.394 55.0 0.0 0.0 37.1 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2462 0.033405 TACTCCCTCCCTCCGTTCAG 60.033 60.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.862371 GTGATCTCCACAATATTCGATAGTTAT 57.138 33.333 0.00 0.00 45.03 1.89
32 33 9.860898 TGATCTCCACAATATTCGATAGTTATG 57.139 33.333 0.00 0.00 37.40 1.90
34 35 9.862371 ATCTCCACAATATTCGATAGTTATGAC 57.138 33.333 0.00 0.00 37.40 3.06
35 36 8.856103 TCTCCACAATATTCGATAGTTATGACA 58.144 33.333 0.00 0.00 37.40 3.58
36 37 9.645059 CTCCACAATATTCGATAGTTATGACAT 57.355 33.333 0.00 0.00 37.40 3.06
37 38 9.996554 TCCACAATATTCGATAGTTATGACATT 57.003 29.630 0.00 0.00 37.40 2.71
73 74 9.277783 AGTTATGGCTATGATTGTAATCTTGTC 57.722 33.333 6.21 0.00 36.39 3.18
74 75 9.277783 GTTATGGCTATGATTGTAATCTTGTCT 57.722 33.333 6.21 0.00 36.39 3.41
78 79 9.851686 TGGCTATGATTGTAATCTTGTCTATTT 57.148 29.630 6.21 0.00 36.39 1.40
97 98 8.926710 GTCTATTTATAGACGTGGAATGGAATG 58.073 37.037 12.68 0.00 46.66 2.67
98 99 8.094548 TCTATTTATAGACGTGGAATGGAATGG 58.905 37.037 0.00 0.00 34.63 3.16
99 100 2.325583 TAGACGTGGAATGGAATGGC 57.674 50.000 0.00 0.00 0.00 4.40
100 101 0.394352 AGACGTGGAATGGAATGGCC 60.394 55.000 0.00 0.00 37.10 5.36
101 102 1.379843 ACGTGGAATGGAATGGCCC 60.380 57.895 0.00 0.00 34.97 5.80
102 103 1.379710 CGTGGAATGGAATGGCCCA 60.380 57.895 0.00 0.00 41.05 5.36
103 104 0.969917 CGTGGAATGGAATGGCCCAA 60.970 55.000 0.00 0.00 40.04 4.12
104 105 0.826062 GTGGAATGGAATGGCCCAAG 59.174 55.000 0.00 0.00 40.04 3.61
105 106 0.977108 TGGAATGGAATGGCCCAAGC 60.977 55.000 0.00 0.00 40.04 4.01
106 107 1.438814 GAATGGAATGGCCCAAGCG 59.561 57.895 0.00 0.00 40.04 4.68
107 108 1.305213 AATGGAATGGCCCAAGCGT 60.305 52.632 0.00 0.00 40.04 5.07
108 109 1.606885 AATGGAATGGCCCAAGCGTG 61.607 55.000 0.00 0.00 40.04 5.34
109 110 3.451894 GGAATGGCCCAAGCGTGG 61.452 66.667 12.27 12.27 45.53 4.94
110 111 2.676471 GAATGGCCCAAGCGTGGT 60.676 61.111 17.81 0.00 44.30 4.16
111 112 2.676471 AATGGCCCAAGCGTGGTC 60.676 61.111 17.81 4.24 44.30 4.02
112 113 3.505790 AATGGCCCAAGCGTGGTCA 62.506 57.895 17.81 14.89 44.30 4.02
113 114 2.992817 AATGGCCCAAGCGTGGTCAA 62.993 55.000 17.81 0.00 44.30 3.18
114 115 2.676471 GGCCCAAGCGTGGTCAAT 60.676 61.111 17.81 0.00 44.30 2.57
115 116 2.700773 GGCCCAAGCGTGGTCAATC 61.701 63.158 17.81 1.37 44.30 2.67
116 117 1.675641 GCCCAAGCGTGGTCAATCT 60.676 57.895 17.81 0.00 44.30 2.40
117 118 1.244019 GCCCAAGCGTGGTCAATCTT 61.244 55.000 17.81 0.00 44.30 2.40
118 119 0.804989 CCCAAGCGTGGTCAATCTTC 59.195 55.000 17.81 0.00 44.30 2.87
119 120 1.611673 CCCAAGCGTGGTCAATCTTCT 60.612 52.381 17.81 0.00 44.30 2.85
120 121 2.154462 CCAAGCGTGGTCAATCTTCTT 58.846 47.619 10.93 0.00 40.42 2.52
121 122 3.334691 CCAAGCGTGGTCAATCTTCTTA 58.665 45.455 10.93 0.00 40.42 2.10
122 123 3.125316 CCAAGCGTGGTCAATCTTCTTAC 59.875 47.826 10.93 0.00 40.42 2.34
123 124 3.678056 AGCGTGGTCAATCTTCTTACA 57.322 42.857 0.00 0.00 0.00 2.41
543 548 7.696992 TGAAGTCCCCTAAAAATATGTGTTC 57.303 36.000 0.00 0.00 0.00 3.18
672 876 4.062677 AGCGTGTACTCCTCTACTAGAG 57.937 50.000 6.14 6.14 41.96 2.43
681 885 1.686428 CCTCTACTAGAGTGCAGGGCA 60.686 57.143 11.46 0.00 40.72 5.36
682 886 2.315176 CTCTACTAGAGTGCAGGGCAT 58.685 52.381 0.00 0.00 41.91 4.40
684 888 1.069823 CTACTAGAGTGCAGGGCATGG 59.930 57.143 0.00 0.00 41.91 3.66
685 889 1.147824 CTAGAGTGCAGGGCATGGG 59.852 63.158 0.00 0.00 41.91 4.00
1264 1553 2.257286 TAGCGACGTACGGAGGCAAC 62.257 60.000 21.06 1.54 42.83 4.17
1316 1621 1.068250 GGCCCTAGAGTAGCTTGCG 59.932 63.158 0.00 0.00 0.00 4.85
1344 1649 6.017109 CCTGGCTAATGTAATGTAATGGTGAC 60.017 42.308 0.00 0.00 0.00 3.67
1362 1667 4.450419 GGTGACTCTGTGTTGATTCTTCTG 59.550 45.833 0.00 0.00 0.00 3.02
1368 1779 5.684704 TCTGTGTTGATTCTTCTGGTTTCT 58.315 37.500 0.00 0.00 0.00 2.52
1369 1780 6.826668 TCTGTGTTGATTCTTCTGGTTTCTA 58.173 36.000 0.00 0.00 0.00 2.10
1370 1781 6.931281 TCTGTGTTGATTCTTCTGGTTTCTAG 59.069 38.462 0.00 0.00 0.00 2.43
1371 1782 5.997746 TGTGTTGATTCTTCTGGTTTCTAGG 59.002 40.000 0.00 0.00 0.00 3.02
1372 1783 5.412904 GTGTTGATTCTTCTGGTTTCTAGGG 59.587 44.000 0.00 0.00 0.00 3.53
1373 1784 5.309543 TGTTGATTCTTCTGGTTTCTAGGGA 59.690 40.000 0.00 0.00 0.00 4.20
1374 1785 5.683876 TGATTCTTCTGGTTTCTAGGGAG 57.316 43.478 0.00 0.00 0.00 4.30
1375 1786 5.094387 TGATTCTTCTGGTTTCTAGGGAGT 58.906 41.667 0.00 0.00 0.00 3.85
1376 1787 6.261435 TGATTCTTCTGGTTTCTAGGGAGTA 58.739 40.000 0.00 0.00 0.00 2.59
1377 1788 5.997384 TTCTTCTGGTTTCTAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
1378 1789 5.272405 TCTTCTGGTTTCTAGGGAGTACT 57.728 43.478 0.00 0.00 0.00 2.73
1379 1790 5.262804 TCTTCTGGTTTCTAGGGAGTACTC 58.737 45.833 14.87 14.87 0.00 2.59
1419 1830 2.211619 AATTTGGTGGGCGTGCATCG 62.212 55.000 0.00 0.00 43.12 3.84
1606 2075 2.410730 ACGCAGATACGCAAAAGTACAC 59.589 45.455 0.00 0.00 36.19 2.90
1619 2088 2.034532 TACACTGGCCCGTCTCGA 59.965 61.111 0.00 0.00 0.00 4.04
1620 2089 1.379443 TACACTGGCCCGTCTCGAT 60.379 57.895 0.00 0.00 0.00 3.59
1621 2090 1.381928 TACACTGGCCCGTCTCGATC 61.382 60.000 0.00 0.00 0.00 3.69
1622 2091 2.362503 ACTGGCCCGTCTCGATCA 60.363 61.111 0.00 0.00 0.00 2.92
1832 2374 1.002250 CGCGGGCATATCACGTACTC 61.002 60.000 0.00 0.00 0.00 2.59
1833 2375 0.666577 GCGGGCATATCACGTACTCC 60.667 60.000 0.00 0.00 0.00 3.85
1834 2376 0.038526 CGGGCATATCACGTACTCCC 60.039 60.000 0.00 0.00 0.00 4.30
1835 2377 1.339097 GGGCATATCACGTACTCCCT 58.661 55.000 0.00 0.00 0.00 4.20
1836 2378 1.272769 GGGCATATCACGTACTCCCTC 59.727 57.143 0.00 0.00 0.00 4.30
1837 2379 1.272769 GGCATATCACGTACTCCCTCC 59.727 57.143 0.00 0.00 0.00 4.30
1838 2380 1.068472 GCATATCACGTACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
1839 2381 2.228059 CATATCACGTACTCCCTCCGT 58.772 52.381 0.00 0.00 34.71 4.69
1840 2382 2.425143 TATCACGTACTCCCTCCGTT 57.575 50.000 0.00 0.00 31.46 4.44
1841 2383 1.101331 ATCACGTACTCCCTCCGTTC 58.899 55.000 0.00 0.00 31.46 3.95
1842 2384 1.136147 CACGTACTCCCTCCGTTCG 59.864 63.158 0.00 0.00 31.46 3.95
1843 2385 2.042831 ACGTACTCCCTCCGTTCGG 61.043 63.158 4.74 4.74 30.86 4.30
1844 2386 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
1845 2387 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
1846 2388 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1847 2389 2.301346 GTACTCCCTCCGTTCGGAATA 58.699 52.381 14.79 3.14 33.41 1.75
1848 2390 2.083628 ACTCCCTCCGTTCGGAATAT 57.916 50.000 14.79 0.00 33.41 1.28
1849 2391 1.962100 ACTCCCTCCGTTCGGAATATC 59.038 52.381 14.79 0.00 33.41 1.63
1850 2392 2.240279 CTCCCTCCGTTCGGAATATCT 58.760 52.381 14.79 0.00 33.41 1.98
1851 2393 2.628657 CTCCCTCCGTTCGGAATATCTT 59.371 50.000 14.79 0.00 33.41 2.40
1852 2394 2.364324 TCCCTCCGTTCGGAATATCTTG 59.636 50.000 14.79 1.97 33.41 3.02
1853 2395 2.102588 CCCTCCGTTCGGAATATCTTGT 59.897 50.000 14.79 0.00 33.41 3.16
1854 2396 3.381949 CCTCCGTTCGGAATATCTTGTC 58.618 50.000 14.79 0.00 33.41 3.18
1855 2397 3.043586 CTCCGTTCGGAATATCTTGTCG 58.956 50.000 14.79 0.00 33.41 4.35
1856 2398 1.521423 CCGTTCGGAATATCTTGTCGC 59.479 52.381 5.19 0.00 0.00 5.19
1857 2399 2.190161 CGTTCGGAATATCTTGTCGCA 58.810 47.619 0.00 0.00 0.00 5.10
1858 2400 2.216488 CGTTCGGAATATCTTGTCGCAG 59.784 50.000 0.00 0.00 0.00 5.18
1859 2401 3.444916 GTTCGGAATATCTTGTCGCAGA 58.555 45.455 0.00 0.00 0.00 4.26
1860 2402 3.793797 TCGGAATATCTTGTCGCAGAA 57.206 42.857 0.00 0.00 39.69 3.02
1861 2403 4.118093 TCGGAATATCTTGTCGCAGAAA 57.882 40.909 0.00 0.00 39.69 2.52
1862 2404 4.693283 TCGGAATATCTTGTCGCAGAAAT 58.307 39.130 0.00 0.00 39.69 2.17
1863 2405 4.507756 TCGGAATATCTTGTCGCAGAAATG 59.492 41.667 0.00 0.00 39.69 2.32
1864 2406 4.507756 CGGAATATCTTGTCGCAGAAATGA 59.492 41.667 0.00 0.00 39.69 2.57
1865 2407 5.006649 CGGAATATCTTGTCGCAGAAATGAA 59.993 40.000 0.00 0.00 39.69 2.57
1866 2408 6.293081 CGGAATATCTTGTCGCAGAAATGAAT 60.293 38.462 0.00 0.00 39.69 2.57
1867 2409 6.854892 GGAATATCTTGTCGCAGAAATGAATG 59.145 38.462 0.00 0.00 39.69 2.67
1868 2410 6.932356 ATATCTTGTCGCAGAAATGAATGT 57.068 33.333 0.00 0.00 39.69 2.71
1869 2411 8.437360 AATATCTTGTCGCAGAAATGAATGTA 57.563 30.769 0.00 0.00 39.69 2.29
1870 2412 6.932356 ATCTTGTCGCAGAAATGAATGTAT 57.068 33.333 0.00 0.00 39.69 2.29
1871 2413 6.349973 TCTTGTCGCAGAAATGAATGTATC 57.650 37.500 0.00 0.00 39.69 2.24
1872 2414 6.108687 TCTTGTCGCAGAAATGAATGTATCT 58.891 36.000 0.00 0.00 39.69 1.98
1873 2415 7.264947 TCTTGTCGCAGAAATGAATGTATCTA 58.735 34.615 0.00 0.00 39.69 1.98
1874 2416 7.436376 TCTTGTCGCAGAAATGAATGTATCTAG 59.564 37.037 0.00 0.00 39.69 2.43
1875 2417 6.805713 TGTCGCAGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 39.69 2.43
1876 2418 7.436933 TGTCGCAGAAATGAATGTATCTAGAT 58.563 34.615 10.73 10.73 39.69 1.98
1877 2419 7.383300 TGTCGCAGAAATGAATGTATCTAGATG 59.617 37.037 15.79 0.00 39.69 2.90
1878 2420 7.383572 GTCGCAGAAATGAATGTATCTAGATGT 59.616 37.037 15.79 0.00 39.69 3.06
1879 2421 8.576442 TCGCAGAAATGAATGTATCTAGATGTA 58.424 33.333 15.79 4.44 0.00 2.29
1880 2422 9.363763 CGCAGAAATGAATGTATCTAGATGTAT 57.636 33.333 15.79 6.61 0.00 2.29
1910 2452 8.952278 AGTTCTAGATACATTCATATCCGAGAC 58.048 37.037 0.00 0.00 32.76 3.36
1911 2453 8.731605 GTTCTAGATACATTCATATCCGAGACA 58.268 37.037 0.00 0.00 32.76 3.41
1912 2454 8.863872 TCTAGATACATTCATATCCGAGACAA 57.136 34.615 0.00 0.00 32.76 3.18
1913 2455 8.951243 TCTAGATACATTCATATCCGAGACAAG 58.049 37.037 0.00 0.00 32.76 3.16
1914 2456 7.531857 AGATACATTCATATCCGAGACAAGT 57.468 36.000 0.00 0.00 32.76 3.16
1915 2457 8.637196 AGATACATTCATATCCGAGACAAGTA 57.363 34.615 0.00 0.00 32.76 2.24
1916 2458 9.078990 AGATACATTCATATCCGAGACAAGTAA 57.921 33.333 0.00 0.00 32.76 2.24
1917 2459 9.692749 GATACATTCATATCCGAGACAAGTAAA 57.307 33.333 0.00 0.00 0.00 2.01
1919 2461 8.964476 ACATTCATATCCGAGACAAGTAAATT 57.036 30.769 0.00 0.00 0.00 1.82
1920 2462 9.046296 ACATTCATATCCGAGACAAGTAAATTC 57.954 33.333 0.00 0.00 0.00 2.17
1921 2463 9.265901 CATTCATATCCGAGACAAGTAAATTCT 57.734 33.333 0.00 0.00 0.00 2.40
1922 2464 8.648557 TTCATATCCGAGACAAGTAAATTCTG 57.351 34.615 0.00 0.00 0.00 3.02
1923 2465 8.007405 TCATATCCGAGACAAGTAAATTCTGA 57.993 34.615 0.00 0.00 0.00 3.27
1924 2466 8.474831 TCATATCCGAGACAAGTAAATTCTGAA 58.525 33.333 0.00 0.00 0.00 3.02
1925 2467 6.969828 ATCCGAGACAAGTAAATTCTGAAC 57.030 37.500 0.00 0.00 0.00 3.18
1926 2468 4.921515 TCCGAGACAAGTAAATTCTGAACG 59.078 41.667 0.00 0.00 0.00 3.95
1927 2469 4.091509 CCGAGACAAGTAAATTCTGAACGG 59.908 45.833 0.00 0.00 0.00 4.44
1928 2470 4.921515 CGAGACAAGTAAATTCTGAACGGA 59.078 41.667 0.00 0.00 0.00 4.69
1929 2471 5.061064 CGAGACAAGTAAATTCTGAACGGAG 59.939 44.000 0.00 0.00 0.00 4.63
1930 2472 5.238583 AGACAAGTAAATTCTGAACGGAGG 58.761 41.667 0.00 0.00 0.00 4.30
1931 2473 4.324267 ACAAGTAAATTCTGAACGGAGGG 58.676 43.478 0.00 0.00 0.00 4.30
1932 2474 4.041198 ACAAGTAAATTCTGAACGGAGGGA 59.959 41.667 0.00 0.00 0.00 4.20
1933 2475 4.473477 AGTAAATTCTGAACGGAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
1934 2476 2.789409 AAATTCTGAACGGAGGGAGG 57.211 50.000 0.00 0.00 0.00 4.30
1935 2477 0.912486 AATTCTGAACGGAGGGAGGG 59.088 55.000 0.00 0.00 0.00 4.30
1936 2478 0.042731 ATTCTGAACGGAGGGAGGGA 59.957 55.000 0.00 0.00 0.00 4.20
1937 2479 0.614979 TTCTGAACGGAGGGAGGGAG 60.615 60.000 0.00 0.00 0.00 4.30
1938 2480 1.305381 CTGAACGGAGGGAGGGAGT 60.305 63.158 0.00 0.00 0.00 3.85
1939 2481 0.033405 CTGAACGGAGGGAGGGAGTA 60.033 60.000 0.00 0.00 0.00 2.59
1940 2482 0.324091 TGAACGGAGGGAGGGAGTAC 60.324 60.000 0.00 0.00 0.00 2.73
1941 2483 1.379576 AACGGAGGGAGGGAGTACG 60.380 63.158 0.00 0.00 0.00 3.67
1942 2484 1.856539 AACGGAGGGAGGGAGTACGA 61.857 60.000 0.00 0.00 0.00 3.43
1943 2485 1.823041 CGGAGGGAGGGAGTACGAC 60.823 68.421 0.00 0.00 0.00 4.34
1944 2486 1.823041 GGAGGGAGGGAGTACGACG 60.823 68.421 0.00 0.00 0.00 5.12
1945 2487 1.077858 GAGGGAGGGAGTACGACGT 60.078 63.158 5.52 5.52 0.00 4.34
1946 2488 0.179000 GAGGGAGGGAGTACGACGTA 59.821 60.000 2.97 2.97 0.00 3.57
1947 2489 0.107459 AGGGAGGGAGTACGACGTAC 60.107 60.000 26.79 26.79 39.10 3.67
1948 2490 1.432270 GGGAGGGAGTACGACGTACG 61.432 65.000 27.34 15.01 43.05 3.67
1949 2491 0.460284 GGAGGGAGTACGACGTACGA 60.460 60.000 27.34 0.00 43.05 3.43
1950 2492 0.926846 GAGGGAGTACGACGTACGAG 59.073 60.000 27.34 17.31 43.05 4.18
1951 2493 1.086634 AGGGAGTACGACGTACGAGC 61.087 60.000 27.34 20.88 43.05 5.03
1952 2494 1.361668 GGGAGTACGACGTACGAGCA 61.362 60.000 27.34 3.16 43.05 4.26
1953 2495 0.443869 GGAGTACGACGTACGAGCAA 59.556 55.000 27.34 1.41 43.05 3.91
1954 2496 1.528603 GGAGTACGACGTACGAGCAAG 60.529 57.143 27.34 10.11 43.05 4.01
1955 2497 1.391485 GAGTACGACGTACGAGCAAGA 59.609 52.381 27.34 0.00 43.05 3.02
1956 2498 2.005451 AGTACGACGTACGAGCAAGAT 58.995 47.619 27.34 9.08 43.05 2.40
1957 2499 2.030213 AGTACGACGTACGAGCAAGATC 59.970 50.000 27.34 5.97 43.05 2.75
1958 2500 0.098376 ACGACGTACGAGCAAGATCC 59.902 55.000 24.41 0.00 45.77 3.36
1959 2501 0.591741 CGACGTACGAGCAAGATCCC 60.592 60.000 24.41 0.00 45.77 3.85
1960 2502 0.248949 GACGTACGAGCAAGATCCCC 60.249 60.000 24.41 0.00 0.00 4.81
1961 2503 0.968901 ACGTACGAGCAAGATCCCCA 60.969 55.000 24.41 0.00 0.00 4.96
1962 2504 0.527817 CGTACGAGCAAGATCCCCAC 60.528 60.000 10.44 0.00 0.00 4.61
1963 2505 0.527817 GTACGAGCAAGATCCCCACG 60.528 60.000 0.00 0.00 0.00 4.94
1964 2506 0.681887 TACGAGCAAGATCCCCACGA 60.682 55.000 0.00 0.00 0.00 4.35
1965 2507 1.330655 ACGAGCAAGATCCCCACGAT 61.331 55.000 0.00 0.00 0.00 3.73
1966 2508 0.179073 CGAGCAAGATCCCCACGATT 60.179 55.000 0.00 0.00 0.00 3.34
1967 2509 1.587547 GAGCAAGATCCCCACGATTC 58.412 55.000 0.00 0.00 0.00 2.52
1968 2510 0.179073 AGCAAGATCCCCACGATTCG 60.179 55.000 4.14 4.14 0.00 3.34
1969 2511 0.179084 GCAAGATCCCCACGATTCGA 60.179 55.000 13.95 0.00 0.00 3.71
1970 2512 1.571919 CAAGATCCCCACGATTCGAC 58.428 55.000 13.95 0.00 0.00 4.20
1971 2513 0.102481 AAGATCCCCACGATTCGACG 59.898 55.000 13.95 3.22 39.31 5.12
1972 2514 1.299926 GATCCCCACGATTCGACGG 60.300 63.158 13.95 12.13 37.61 4.79
1973 2515 2.694829 GATCCCCACGATTCGACGGG 62.695 65.000 23.11 23.11 40.68 5.28
1977 2519 4.485834 CACGATTCGACGGGCGGA 62.486 66.667 13.95 0.00 41.33 5.54
1978 2520 4.487412 ACGATTCGACGGGCGGAC 62.487 66.667 13.95 0.00 41.33 4.79
1991 2533 4.829518 CGGACGCGTCGATCTGCA 62.830 66.667 30.99 0.00 0.00 4.41
1992 2534 3.248171 GGACGCGTCGATCTGCAC 61.248 66.667 30.99 12.33 0.00 4.57
1993 2535 3.598562 GACGCGTCGATCTGCACG 61.599 66.667 25.19 4.78 39.09 5.34
1997 2539 3.250323 CGTCGATCTGCACGGCTG 61.250 66.667 0.00 0.00 33.06 4.85
1998 2540 3.558411 GTCGATCTGCACGGCTGC 61.558 66.667 0.00 0.00 44.52 5.25
2006 2548 3.788766 GCACGGCTGCACCTTACG 61.789 66.667 0.50 0.00 43.62 3.18
2007 2549 3.788766 CACGGCTGCACCTTACGC 61.789 66.667 0.50 0.00 35.61 4.42
2010 2552 3.127533 GGCTGCACCTTACGCCAG 61.128 66.667 7.48 0.00 42.06 4.85
2011 2553 3.804193 GCTGCACCTTACGCCAGC 61.804 66.667 0.00 0.00 0.00 4.85
2012 2554 2.046892 CTGCACCTTACGCCAGCT 60.047 61.111 0.00 0.00 0.00 4.24
2013 2555 1.672356 CTGCACCTTACGCCAGCTT 60.672 57.895 0.00 0.00 0.00 3.74
2014 2556 1.639298 CTGCACCTTACGCCAGCTTC 61.639 60.000 0.00 0.00 0.00 3.86
2015 2557 1.671054 GCACCTTACGCCAGCTTCA 60.671 57.895 0.00 0.00 0.00 3.02
2016 2558 1.912371 GCACCTTACGCCAGCTTCAC 61.912 60.000 0.00 0.00 0.00 3.18
2017 2559 1.003718 ACCTTACGCCAGCTTCACC 60.004 57.895 0.00 0.00 0.00 4.02
2018 2560 2.100631 CCTTACGCCAGCTTCACCG 61.101 63.158 0.00 0.00 0.00 4.94
2019 2561 2.740714 CTTACGCCAGCTTCACCGC 61.741 63.158 0.00 0.00 0.00 5.68
2020 2562 3.523087 TTACGCCAGCTTCACCGCA 62.523 57.895 0.00 0.00 0.00 5.69
2024 2566 3.414700 CCAGCTTCACCGCACGAC 61.415 66.667 0.00 0.00 0.00 4.34
2025 2567 3.414700 CAGCTTCACCGCACGACC 61.415 66.667 0.00 0.00 0.00 4.79
2026 2568 4.681978 AGCTTCACCGCACGACCC 62.682 66.667 0.00 0.00 0.00 4.46
2028 2570 4.308458 CTTCACCGCACGACCCCA 62.308 66.667 0.00 0.00 0.00 4.96
2029 2571 3.605749 CTTCACCGCACGACCCCAT 62.606 63.158 0.00 0.00 0.00 4.00
2030 2572 3.599285 TTCACCGCACGACCCCATC 62.599 63.158 0.00 0.00 0.00 3.51
2035 2577 4.832608 GCACGACCCCATCCCGTC 62.833 72.222 0.00 0.00 33.96 4.79
2036 2578 4.157120 CACGACCCCATCCCGTCC 62.157 72.222 0.00 0.00 33.96 4.79
2043 2585 4.838152 CCATCCCGTCCGGCAGTG 62.838 72.222 0.00 0.00 0.00 3.66
2044 2586 4.838152 CATCCCGTCCGGCAGTGG 62.838 72.222 0.00 0.00 0.00 4.00
2068 2610 5.715070 CGTAGCTAGGATTTTATCTCAGGG 58.285 45.833 7.70 0.00 0.00 4.45
2069 2611 5.244178 CGTAGCTAGGATTTTATCTCAGGGT 59.756 44.000 7.70 0.00 0.00 4.34
2070 2612 5.559148 AGCTAGGATTTTATCTCAGGGTG 57.441 43.478 0.00 0.00 0.00 4.61
2071 2613 4.349342 AGCTAGGATTTTATCTCAGGGTGG 59.651 45.833 0.00 0.00 0.00 4.61
2072 2614 4.103311 GCTAGGATTTTATCTCAGGGTGGT 59.897 45.833 0.00 0.00 0.00 4.16
2073 2615 4.779993 AGGATTTTATCTCAGGGTGGTC 57.220 45.455 0.00 0.00 0.00 4.02
2074 2616 3.459969 AGGATTTTATCTCAGGGTGGTCC 59.540 47.826 0.00 0.00 0.00 4.46
2075 2617 3.202151 GGATTTTATCTCAGGGTGGTCCA 59.798 47.826 0.00 0.00 38.24 4.02
2076 2618 4.325030 GGATTTTATCTCAGGGTGGTCCAA 60.325 45.833 0.00 0.00 38.24 3.53
2077 2619 4.946160 TTTTATCTCAGGGTGGTCCAAT 57.054 40.909 0.00 0.00 38.24 3.16
2078 2620 4.946160 TTTATCTCAGGGTGGTCCAATT 57.054 40.909 0.00 0.00 38.24 2.32
2079 2621 2.814805 ATCTCAGGGTGGTCCAATTG 57.185 50.000 0.00 0.00 38.24 2.32
2080 2622 1.741028 TCTCAGGGTGGTCCAATTGA 58.259 50.000 7.12 0.00 38.24 2.57
2081 2623 1.351017 TCTCAGGGTGGTCCAATTGAC 59.649 52.381 7.12 3.33 43.67 3.18
2082 2624 1.073763 CTCAGGGTGGTCCAATTGACA 59.926 52.381 7.12 0.00 46.38 3.58
2083 2625 1.073763 TCAGGGTGGTCCAATTGACAG 59.926 52.381 7.12 0.00 46.38 3.51
2084 2626 0.405585 AGGGTGGTCCAATTGACAGG 59.594 55.000 7.12 0.00 46.38 4.00
2085 2627 0.404040 GGGTGGTCCAATTGACAGGA 59.596 55.000 7.12 0.00 46.38 3.86
2086 2628 1.203001 GGGTGGTCCAATTGACAGGAA 60.203 52.381 7.12 0.00 46.38 3.36
2087 2629 2.593026 GGTGGTCCAATTGACAGGAAA 58.407 47.619 7.12 0.00 46.38 3.13
2088 2630 2.962421 GGTGGTCCAATTGACAGGAAAA 59.038 45.455 7.12 0.00 46.38 2.29
2089 2631 3.386402 GGTGGTCCAATTGACAGGAAAAA 59.614 43.478 7.12 0.00 46.38 1.94
2113 2655 8.729805 AAAAATTGCTCCACAAATTCAACTAA 57.270 26.923 0.00 0.00 42.86 2.24
2114 2656 8.729805 AAAATTGCTCCACAAATTCAACTAAA 57.270 26.923 0.00 0.00 42.86 1.85
2115 2657 7.713764 AATTGCTCCACAAATTCAACTAAAC 57.286 32.000 0.00 0.00 42.86 2.01
2116 2658 5.195001 TGCTCCACAAATTCAACTAAACC 57.805 39.130 0.00 0.00 0.00 3.27
2117 2659 4.646945 TGCTCCACAAATTCAACTAAACCA 59.353 37.500 0.00 0.00 0.00 3.67
2118 2660 5.221224 TGCTCCACAAATTCAACTAAACCAG 60.221 40.000 0.00 0.00 0.00 4.00
2119 2661 5.195001 TCCACAAATTCAACTAAACCAGC 57.805 39.130 0.00 0.00 0.00 4.85
2120 2662 4.646945 TCCACAAATTCAACTAAACCAGCA 59.353 37.500 0.00 0.00 0.00 4.41
2121 2663 5.304101 TCCACAAATTCAACTAAACCAGCAT 59.696 36.000 0.00 0.00 0.00 3.79
2122 2664 6.491745 TCCACAAATTCAACTAAACCAGCATA 59.508 34.615 0.00 0.00 0.00 3.14
2123 2665 7.178274 TCCACAAATTCAACTAAACCAGCATAT 59.822 33.333 0.00 0.00 0.00 1.78
2124 2666 7.276218 CCACAAATTCAACTAAACCAGCATATG 59.724 37.037 0.00 0.00 0.00 1.78
2125 2667 6.813152 ACAAATTCAACTAAACCAGCATATGC 59.187 34.615 20.36 20.36 42.49 3.14
2126 2668 6.528537 AATTCAACTAAACCAGCATATGCA 57.471 33.333 28.62 6.72 45.16 3.96
2127 2669 4.963276 TCAACTAAACCAGCATATGCAC 57.037 40.909 28.62 1.07 45.16 4.57
2128 2670 4.331108 TCAACTAAACCAGCATATGCACA 58.669 39.130 28.62 6.60 45.16 4.57
2129 2671 4.155826 TCAACTAAACCAGCATATGCACAC 59.844 41.667 28.62 0.00 45.16 3.82
2130 2672 3.684908 ACTAAACCAGCATATGCACACA 58.315 40.909 28.62 8.27 45.16 3.72
2131 2673 3.691118 ACTAAACCAGCATATGCACACAG 59.309 43.478 28.62 18.19 45.16 3.66
2132 2674 2.495155 AACCAGCATATGCACACAGA 57.505 45.000 28.62 0.00 45.16 3.41
2133 2675 2.495155 ACCAGCATATGCACACAGAA 57.505 45.000 28.62 0.00 45.16 3.02
2134 2676 3.008835 ACCAGCATATGCACACAGAAT 57.991 42.857 28.62 3.13 45.16 2.40
2135 2677 4.155063 ACCAGCATATGCACACAGAATA 57.845 40.909 28.62 0.00 45.16 1.75
2136 2678 4.722220 ACCAGCATATGCACACAGAATAT 58.278 39.130 28.62 1.58 45.16 1.28
2137 2679 5.868454 ACCAGCATATGCACACAGAATATA 58.132 37.500 28.62 0.00 45.16 0.86
2138 2680 6.479006 ACCAGCATATGCACACAGAATATAT 58.521 36.000 28.62 0.81 45.16 0.86
2139 2681 6.596888 ACCAGCATATGCACACAGAATATATC 59.403 38.462 28.62 0.00 45.16 1.63
2140 2682 6.596497 CCAGCATATGCACACAGAATATATCA 59.404 38.462 28.62 0.00 45.16 2.15
2141 2683 7.120138 CCAGCATATGCACACAGAATATATCAA 59.880 37.037 28.62 0.00 45.16 2.57
2142 2684 8.674607 CAGCATATGCACACAGAATATATCAAT 58.325 33.333 28.62 0.00 45.16 2.57
2143 2685 9.895138 AGCATATGCACACAGAATATATCAATA 57.105 29.630 28.62 0.00 45.16 1.90
2148 2690 8.607441 TGCACACAGAATATATCAATAAGGTC 57.393 34.615 0.00 0.00 0.00 3.85
2149 2691 8.432013 TGCACACAGAATATATCAATAAGGTCT 58.568 33.333 0.00 0.00 0.00 3.85
2150 2692 9.277783 GCACACAGAATATATCAATAAGGTCTT 57.722 33.333 0.00 0.00 0.00 3.01
2190 2732 8.911247 AATTCATGGTTAAGTCTTAAATTCGC 57.089 30.769 6.61 0.00 0.00 4.70
2191 2733 6.102006 TCATGGTTAAGTCTTAAATTCGCG 57.898 37.500 6.61 0.00 0.00 5.87
2192 2734 5.640357 TCATGGTTAAGTCTTAAATTCGCGT 59.360 36.000 5.77 0.00 0.00 6.01
2193 2735 6.812656 TCATGGTTAAGTCTTAAATTCGCGTA 59.187 34.615 5.77 0.00 0.00 4.42
2194 2736 7.331440 TCATGGTTAAGTCTTAAATTCGCGTAA 59.669 33.333 5.77 0.00 0.00 3.18
2195 2737 7.418840 TGGTTAAGTCTTAAATTCGCGTAAA 57.581 32.000 5.77 0.00 0.00 2.01
2196 2738 7.859598 TGGTTAAGTCTTAAATTCGCGTAAAA 58.140 30.769 5.77 0.00 0.00 1.52
2197 2739 8.011106 TGGTTAAGTCTTAAATTCGCGTAAAAG 58.989 33.333 5.77 4.65 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.862371 ATAACTATCGAATATTGTGGAGATCAC 57.138 33.333 0.00 0.00 46.23 3.06
6 7 9.860898 CATAACTATCGAATATTGTGGAGATCA 57.139 33.333 0.00 0.00 0.00 2.92
8 9 9.862371 GTCATAACTATCGAATATTGTGGAGAT 57.138 33.333 0.00 0.00 0.00 2.75
9 10 8.856103 TGTCATAACTATCGAATATTGTGGAGA 58.144 33.333 0.00 0.00 0.00 3.71
10 11 9.645059 ATGTCATAACTATCGAATATTGTGGAG 57.355 33.333 0.00 0.00 0.00 3.86
11 12 9.996554 AATGTCATAACTATCGAATATTGTGGA 57.003 29.630 0.00 0.00 0.00 4.02
47 48 9.277783 GACAAGATTACAATCATAGCCATAACT 57.722 33.333 4.85 0.00 37.89 2.24
48 49 9.277783 AGACAAGATTACAATCATAGCCATAAC 57.722 33.333 4.85 0.00 37.89 1.89
52 53 9.851686 AAATAGACAAGATTACAATCATAGCCA 57.148 29.630 4.85 0.00 37.89 4.75
72 73 8.094548 CCATTCCATTCCACGTCTATAAATAGA 58.905 37.037 0.00 0.00 37.07 1.98
73 74 7.148407 GCCATTCCATTCCACGTCTATAAATAG 60.148 40.741 0.00 0.00 0.00 1.73
74 75 6.653320 GCCATTCCATTCCACGTCTATAAATA 59.347 38.462 0.00 0.00 0.00 1.40
75 76 5.473504 GCCATTCCATTCCACGTCTATAAAT 59.526 40.000 0.00 0.00 0.00 1.40
76 77 4.819630 GCCATTCCATTCCACGTCTATAAA 59.180 41.667 0.00 0.00 0.00 1.40
77 78 4.385825 GCCATTCCATTCCACGTCTATAA 58.614 43.478 0.00 0.00 0.00 0.98
78 79 3.244422 GGCCATTCCATTCCACGTCTATA 60.244 47.826 0.00 0.00 34.01 1.31
79 80 2.487265 GGCCATTCCATTCCACGTCTAT 60.487 50.000 0.00 0.00 34.01 1.98
80 81 1.134220 GGCCATTCCATTCCACGTCTA 60.134 52.381 0.00 0.00 34.01 2.59
81 82 0.394352 GGCCATTCCATTCCACGTCT 60.394 55.000 0.00 0.00 34.01 4.18
82 83 1.384222 GGGCCATTCCATTCCACGTC 61.384 60.000 4.39 0.00 36.21 4.34
83 84 1.379843 GGGCCATTCCATTCCACGT 60.380 57.895 4.39 0.00 36.21 4.49
84 85 0.969917 TTGGGCCATTCCATTCCACG 60.970 55.000 7.26 0.00 36.58 4.94
85 86 0.826062 CTTGGGCCATTCCATTCCAC 59.174 55.000 7.26 0.00 36.58 4.02
86 87 0.977108 GCTTGGGCCATTCCATTCCA 60.977 55.000 7.26 0.00 36.58 3.53
87 88 1.825341 GCTTGGGCCATTCCATTCC 59.175 57.895 7.26 0.00 36.58 3.01
88 89 1.322538 ACGCTTGGGCCATTCCATTC 61.323 55.000 7.26 0.00 36.58 2.67
89 90 1.305213 ACGCTTGGGCCATTCCATT 60.305 52.632 7.26 0.00 36.58 3.16
90 91 2.053865 CACGCTTGGGCCATTCCAT 61.054 57.895 7.26 0.00 36.58 3.41
91 92 2.676121 CACGCTTGGGCCATTCCA 60.676 61.111 7.26 0.00 36.21 3.53
92 93 3.451894 CCACGCTTGGGCCATTCC 61.452 66.667 7.26 0.00 39.57 3.01
100 101 7.090570 CTGTAAGAAGATTGACCACGCTTGG 62.091 48.000 7.87 7.87 43.33 3.61
101 102 3.745975 TGTAAGAAGATTGACCACGCTTG 59.254 43.478 0.00 0.00 0.00 4.01
102 103 3.997021 CTGTAAGAAGATTGACCACGCTT 59.003 43.478 0.00 0.00 34.07 4.68
103 104 3.006967 ACTGTAAGAAGATTGACCACGCT 59.993 43.478 0.00 0.00 37.43 5.07
104 105 3.326747 ACTGTAAGAAGATTGACCACGC 58.673 45.455 0.00 0.00 37.43 5.34
105 106 6.330278 TCATACTGTAAGAAGATTGACCACG 58.670 40.000 0.00 0.00 37.43 4.94
106 107 7.168302 CGATCATACTGTAAGAAGATTGACCAC 59.832 40.741 0.00 0.00 37.43 4.16
107 108 7.068226 TCGATCATACTGTAAGAAGATTGACCA 59.932 37.037 0.00 0.00 37.43 4.02
108 109 7.426410 TCGATCATACTGTAAGAAGATTGACC 58.574 38.462 0.00 0.00 37.43 4.02
109 110 8.910666 CATCGATCATACTGTAAGAAGATTGAC 58.089 37.037 0.00 0.00 36.27 3.18
110 111 8.633561 ACATCGATCATACTGTAAGAAGATTGA 58.366 33.333 0.00 10.84 37.09 2.57
111 112 8.809159 ACATCGATCATACTGTAAGAAGATTG 57.191 34.615 0.00 7.33 37.43 2.67
112 113 8.855110 AGACATCGATCATACTGTAAGAAGATT 58.145 33.333 0.00 5.05 37.43 2.40
113 114 8.402798 AGACATCGATCATACTGTAAGAAGAT 57.597 34.615 0.00 3.43 37.43 2.40
114 115 7.809546 AGACATCGATCATACTGTAAGAAGA 57.190 36.000 0.00 1.36 37.43 2.87
115 116 8.560374 TGTAGACATCGATCATACTGTAAGAAG 58.440 37.037 0.00 0.00 37.43 2.85
116 117 8.446599 TGTAGACATCGATCATACTGTAAGAA 57.553 34.615 0.00 0.00 37.43 2.52
117 118 8.622948 ATGTAGACATCGATCATACTGTAAGA 57.377 34.615 0.00 0.00 31.22 2.10
120 121 9.449719 ACATATGTAGACATCGATCATACTGTA 57.550 33.333 6.56 0.00 37.76 2.74
121 122 8.341892 ACATATGTAGACATCGATCATACTGT 57.658 34.615 6.56 4.63 37.76 3.55
344 345 2.498078 GTTGAACAGGAAACCCCACAAA 59.502 45.455 0.00 0.00 37.41 2.83
345 346 2.104170 GTTGAACAGGAAACCCCACAA 58.896 47.619 0.00 0.00 37.41 3.33
347 348 1.681264 CTGTTGAACAGGAAACCCCAC 59.319 52.381 17.27 0.00 42.35 4.61
348 349 1.566703 TCTGTTGAACAGGAAACCCCA 59.433 47.619 23.65 0.31 45.94 4.96
352 354 6.459923 ACTCTAGATCTGTTGAACAGGAAAC 58.540 40.000 23.65 12.86 45.94 2.78
428 433 5.414360 CCTATATACTAGTGCATGCAGTGG 58.586 45.833 33.38 32.00 34.58 4.00
433 438 3.119101 ACCGCCTATATACTAGTGCATGC 60.119 47.826 11.82 11.82 0.00 4.06
440 445 9.485206 AAAAACAATACACCGCCTATATACTAG 57.515 33.333 0.00 0.00 0.00 2.57
594 688 2.785713 TTTTTGGACAAACCGCTAGC 57.214 45.000 4.06 4.06 42.61 3.42
927 1188 1.652563 GGCCGCAAGAAACGAAACT 59.347 52.632 0.00 0.00 43.02 2.66
1264 1553 2.294791 AGAACTCGAGCGGATTATCTGG 59.705 50.000 13.61 0.00 0.00 3.86
1316 1621 5.182001 CCATTACATTACATTAGCCAGGCTC 59.818 44.000 20.38 0.00 40.44 4.70
1344 1649 5.762218 AGAAACCAGAAGAATCAACACAGAG 59.238 40.000 0.00 0.00 0.00 3.35
1372 1783 8.724229 GCTTAGATTTAGCTACTAGGAGTACTC 58.276 40.741 14.87 14.87 35.74 2.59
1373 1784 8.442374 AGCTTAGATTTAGCTACTAGGAGTACT 58.558 37.037 3.31 0.00 46.66 2.73
1374 1785 8.625786 AGCTTAGATTTAGCTACTAGGAGTAC 57.374 38.462 3.31 0.00 46.66 2.73
1395 1806 0.887933 CACGCCCACCAAATTAGCTT 59.112 50.000 0.00 0.00 0.00 3.74
1527 1966 5.402562 TCTTAATGAAGGAAGCGCATTGCT 61.403 41.667 11.47 9.03 44.26 3.91
1528 1967 2.849880 TAATGAAGGAAGCGCATTGC 57.150 45.000 11.47 6.58 46.98 3.56
1529 1968 4.621068 TCTTAATGAAGGAAGCGCATTG 57.379 40.909 11.47 0.00 34.41 2.82
1606 2075 0.598680 GATTGATCGAGACGGGCCAG 60.599 60.000 4.39 1.85 0.00 4.85
1619 2088 1.496429 AGGCTTTGGGGATCGATTGAT 59.504 47.619 0.00 0.00 37.60 2.57
1620 2089 0.918983 AGGCTTTGGGGATCGATTGA 59.081 50.000 0.00 0.00 0.00 2.57
1621 2090 1.312815 GAGGCTTTGGGGATCGATTG 58.687 55.000 0.00 0.00 0.00 2.67
1622 2091 0.179045 CGAGGCTTTGGGGATCGATT 60.179 55.000 0.00 0.00 35.47 3.34
1832 2374 2.102588 ACAAGATATTCCGAACGGAGGG 59.897 50.000 15.34 5.11 46.06 4.30
1833 2375 3.381949 GACAAGATATTCCGAACGGAGG 58.618 50.000 15.34 4.52 46.06 4.30
1834 2376 3.043586 CGACAAGATATTCCGAACGGAG 58.956 50.000 15.34 5.60 46.06 4.63
1835 2377 2.797087 GCGACAAGATATTCCGAACGGA 60.797 50.000 12.04 12.04 43.52 4.69
1836 2378 1.521423 GCGACAAGATATTCCGAACGG 59.479 52.381 6.94 6.94 0.00 4.44
1837 2379 2.190161 TGCGACAAGATATTCCGAACG 58.810 47.619 0.00 0.00 0.00 3.95
1838 2380 3.444916 TCTGCGACAAGATATTCCGAAC 58.555 45.455 0.00 0.00 0.00 3.95
1839 2381 3.793797 TCTGCGACAAGATATTCCGAA 57.206 42.857 0.00 0.00 0.00 4.30
1840 2382 3.793797 TTCTGCGACAAGATATTCCGA 57.206 42.857 0.00 0.00 0.00 4.55
1841 2383 4.507756 TCATTTCTGCGACAAGATATTCCG 59.492 41.667 0.00 0.00 0.00 4.30
1842 2384 5.991328 TCATTTCTGCGACAAGATATTCC 57.009 39.130 0.00 0.00 0.00 3.01
1843 2385 7.412853 ACATTCATTTCTGCGACAAGATATTC 58.587 34.615 0.00 0.00 0.00 1.75
1844 2386 7.325660 ACATTCATTTCTGCGACAAGATATT 57.674 32.000 0.00 0.00 0.00 1.28
1845 2387 6.932356 ACATTCATTTCTGCGACAAGATAT 57.068 33.333 0.00 0.00 0.00 1.63
1846 2388 7.928167 AGATACATTCATTTCTGCGACAAGATA 59.072 33.333 0.00 0.00 0.00 1.98
1847 2389 6.765036 AGATACATTCATTTCTGCGACAAGAT 59.235 34.615 0.00 0.00 0.00 2.40
1848 2390 6.108687 AGATACATTCATTTCTGCGACAAGA 58.891 36.000 0.00 0.00 0.00 3.02
1849 2391 6.355397 AGATACATTCATTTCTGCGACAAG 57.645 37.500 0.00 0.00 0.00 3.16
1850 2392 7.264947 TCTAGATACATTCATTTCTGCGACAA 58.735 34.615 0.00 0.00 0.00 3.18
1851 2393 6.805713 TCTAGATACATTCATTTCTGCGACA 58.194 36.000 0.00 0.00 0.00 4.35
1852 2394 7.383572 ACATCTAGATACATTCATTTCTGCGAC 59.616 37.037 4.54 0.00 0.00 5.19
1853 2395 7.436933 ACATCTAGATACATTCATTTCTGCGA 58.563 34.615 4.54 0.00 0.00 5.10
1854 2396 7.649370 ACATCTAGATACATTCATTTCTGCG 57.351 36.000 4.54 0.00 0.00 5.18
1884 2426 8.952278 GTCTCGGATATGAATGTATCTAGAACT 58.048 37.037 0.00 0.00 31.35 3.01
1885 2427 8.731605 TGTCTCGGATATGAATGTATCTAGAAC 58.268 37.037 0.00 0.00 31.35 3.01
1886 2428 8.863872 TGTCTCGGATATGAATGTATCTAGAA 57.136 34.615 0.00 0.00 31.35 2.10
1887 2429 8.863872 TTGTCTCGGATATGAATGTATCTAGA 57.136 34.615 0.00 0.00 32.78 2.43
1888 2430 8.735315 ACTTGTCTCGGATATGAATGTATCTAG 58.265 37.037 0.00 0.00 32.78 2.43
1889 2431 8.637196 ACTTGTCTCGGATATGAATGTATCTA 57.363 34.615 0.00 0.00 32.78 1.98
1890 2432 7.531857 ACTTGTCTCGGATATGAATGTATCT 57.468 36.000 0.00 0.00 32.78 1.98
1891 2433 9.692749 TTTACTTGTCTCGGATATGAATGTATC 57.307 33.333 0.00 0.00 0.00 2.24
1894 2436 8.964476 AATTTACTTGTCTCGGATATGAATGT 57.036 30.769 0.00 0.00 0.00 2.71
1895 2437 9.265901 AGAATTTACTTGTCTCGGATATGAATG 57.734 33.333 0.00 0.00 0.00 2.67
1896 2438 9.265901 CAGAATTTACTTGTCTCGGATATGAAT 57.734 33.333 0.00 0.00 0.00 2.57
1897 2439 8.474831 TCAGAATTTACTTGTCTCGGATATGAA 58.525 33.333 0.00 0.00 0.00 2.57
1898 2440 8.007405 TCAGAATTTACTTGTCTCGGATATGA 57.993 34.615 0.00 0.00 0.00 2.15
1899 2441 8.543774 GTTCAGAATTTACTTGTCTCGGATATG 58.456 37.037 0.00 0.00 0.00 1.78
1900 2442 7.435488 CGTTCAGAATTTACTTGTCTCGGATAT 59.565 37.037 0.00 0.00 0.00 1.63
1901 2443 6.750501 CGTTCAGAATTTACTTGTCTCGGATA 59.249 38.462 0.00 0.00 0.00 2.59
1902 2444 5.577164 CGTTCAGAATTTACTTGTCTCGGAT 59.423 40.000 0.00 0.00 0.00 4.18
1903 2445 4.921515 CGTTCAGAATTTACTTGTCTCGGA 59.078 41.667 0.00 0.00 0.00 4.55
1904 2446 4.091509 CCGTTCAGAATTTACTTGTCTCGG 59.908 45.833 0.00 0.00 0.00 4.63
1905 2447 4.921515 TCCGTTCAGAATTTACTTGTCTCG 59.078 41.667 0.00 0.00 0.00 4.04
1906 2448 5.348997 CCTCCGTTCAGAATTTACTTGTCTC 59.651 44.000 0.00 0.00 0.00 3.36
1907 2449 5.238583 CCTCCGTTCAGAATTTACTTGTCT 58.761 41.667 0.00 0.00 0.00 3.41
1908 2450 4.392138 CCCTCCGTTCAGAATTTACTTGTC 59.608 45.833 0.00 0.00 0.00 3.18
1909 2451 4.041198 TCCCTCCGTTCAGAATTTACTTGT 59.959 41.667 0.00 0.00 0.00 3.16
1910 2452 4.575885 TCCCTCCGTTCAGAATTTACTTG 58.424 43.478 0.00 0.00 0.00 3.16
1911 2453 4.323562 CCTCCCTCCGTTCAGAATTTACTT 60.324 45.833 0.00 0.00 0.00 2.24
1912 2454 3.197983 CCTCCCTCCGTTCAGAATTTACT 59.802 47.826 0.00 0.00 0.00 2.24
1913 2455 3.532542 CCTCCCTCCGTTCAGAATTTAC 58.467 50.000 0.00 0.00 0.00 2.01
1914 2456 2.504175 CCCTCCCTCCGTTCAGAATTTA 59.496 50.000 0.00 0.00 0.00 1.40
1915 2457 1.282157 CCCTCCCTCCGTTCAGAATTT 59.718 52.381 0.00 0.00 0.00 1.82
1916 2458 0.912486 CCCTCCCTCCGTTCAGAATT 59.088 55.000 0.00 0.00 0.00 2.17
1917 2459 0.042731 TCCCTCCCTCCGTTCAGAAT 59.957 55.000 0.00 0.00 0.00 2.40
1918 2460 0.614979 CTCCCTCCCTCCGTTCAGAA 60.615 60.000 0.00 0.00 0.00 3.02
1919 2461 1.000486 CTCCCTCCCTCCGTTCAGA 60.000 63.158 0.00 0.00 0.00 3.27
1920 2462 0.033405 TACTCCCTCCCTCCGTTCAG 60.033 60.000 0.00 0.00 0.00 3.02
1921 2463 0.324091 GTACTCCCTCCCTCCGTTCA 60.324 60.000 0.00 0.00 0.00 3.18
1922 2464 1.382692 CGTACTCCCTCCCTCCGTTC 61.383 65.000 0.00 0.00 0.00 3.95
1923 2465 1.379576 CGTACTCCCTCCCTCCGTT 60.380 63.158 0.00 0.00 0.00 4.44
1924 2466 2.274760 CGTACTCCCTCCCTCCGT 59.725 66.667 0.00 0.00 0.00 4.69
1925 2467 1.823041 GTCGTACTCCCTCCCTCCG 60.823 68.421 0.00 0.00 0.00 4.63
1926 2468 1.823041 CGTCGTACTCCCTCCCTCC 60.823 68.421 0.00 0.00 0.00 4.30
1927 2469 0.179000 TACGTCGTACTCCCTCCCTC 59.821 60.000 0.00 0.00 0.00 4.30
1928 2470 0.107459 GTACGTCGTACTCCCTCCCT 60.107 60.000 24.80 0.00 36.25 4.20
1929 2471 1.432270 CGTACGTCGTACTCCCTCCC 61.432 65.000 27.78 4.91 36.93 4.30
1930 2472 0.460284 TCGTACGTCGTACTCCCTCC 60.460 60.000 27.78 5.57 36.93 4.30
1931 2473 0.926846 CTCGTACGTCGTACTCCCTC 59.073 60.000 27.78 6.23 36.93 4.30
1932 2474 1.086634 GCTCGTACGTCGTACTCCCT 61.087 60.000 27.78 0.00 36.93 4.20
1933 2475 1.349973 GCTCGTACGTCGTACTCCC 59.650 63.158 27.78 14.57 36.93 4.30
1934 2476 0.443869 TTGCTCGTACGTCGTACTCC 59.556 55.000 27.78 17.69 36.93 3.85
1935 2477 1.391485 TCTTGCTCGTACGTCGTACTC 59.609 52.381 27.78 18.44 36.93 2.59
1936 2478 1.432514 TCTTGCTCGTACGTCGTACT 58.567 50.000 27.78 0.00 36.93 2.73
1937 2479 2.361407 GATCTTGCTCGTACGTCGTAC 58.639 52.381 22.79 22.79 40.80 3.67
1938 2480 1.328680 GGATCTTGCTCGTACGTCGTA 59.671 52.381 16.05 0.00 40.80 3.43
1939 2481 0.098376 GGATCTTGCTCGTACGTCGT 59.902 55.000 16.05 2.21 40.80 4.34
1940 2482 0.591741 GGGATCTTGCTCGTACGTCG 60.592 60.000 16.05 8.95 41.41 5.12
1941 2483 0.248949 GGGGATCTTGCTCGTACGTC 60.249 60.000 16.05 9.10 0.00 4.34
1942 2484 0.968901 TGGGGATCTTGCTCGTACGT 60.969 55.000 16.05 0.00 0.00 3.57
1943 2485 0.527817 GTGGGGATCTTGCTCGTACG 60.528 60.000 9.53 9.53 0.00 3.67
1944 2486 0.527817 CGTGGGGATCTTGCTCGTAC 60.528 60.000 0.00 0.00 0.00 3.67
1945 2487 0.681887 TCGTGGGGATCTTGCTCGTA 60.682 55.000 0.00 0.00 0.00 3.43
1946 2488 1.330655 ATCGTGGGGATCTTGCTCGT 61.331 55.000 0.00 0.00 0.00 4.18
1947 2489 0.179073 AATCGTGGGGATCTTGCTCG 60.179 55.000 0.00 0.00 33.02 5.03
1948 2490 1.587547 GAATCGTGGGGATCTTGCTC 58.412 55.000 0.00 0.00 33.02 4.26
1949 2491 0.179073 CGAATCGTGGGGATCTTGCT 60.179 55.000 0.00 0.00 33.02 3.91
1950 2492 0.179084 TCGAATCGTGGGGATCTTGC 60.179 55.000 1.52 0.00 33.02 4.01
1951 2493 1.571919 GTCGAATCGTGGGGATCTTG 58.428 55.000 1.52 0.00 33.02 3.02
1952 2494 0.102481 CGTCGAATCGTGGGGATCTT 59.898 55.000 1.52 0.00 33.02 2.40
1953 2495 1.734137 CGTCGAATCGTGGGGATCT 59.266 57.895 1.52 0.00 33.02 2.75
1954 2496 1.299926 CCGTCGAATCGTGGGGATC 60.300 63.158 1.52 0.00 33.02 3.36
1955 2497 2.792947 CCCGTCGAATCGTGGGGAT 61.793 63.158 22.51 0.00 40.67 3.85
1956 2498 3.454573 CCCGTCGAATCGTGGGGA 61.455 66.667 22.51 0.00 40.67 4.81
1960 2502 4.485834 TCCGCCCGTCGAATCGTG 62.486 66.667 1.52 0.00 41.67 4.35
1961 2503 4.487412 GTCCGCCCGTCGAATCGT 62.487 66.667 1.52 0.00 41.67 3.73
1974 2516 4.829518 TGCAGATCGACGCGTCCG 62.830 66.667 31.84 25.30 41.14 4.79
1975 2517 3.248171 GTGCAGATCGACGCGTCC 61.248 66.667 31.84 18.82 0.00 4.79
1976 2518 3.598562 CGTGCAGATCGACGCGTC 61.599 66.667 28.96 28.96 35.20 5.19
1980 2522 3.250323 CAGCCGTGCAGATCGACG 61.250 66.667 7.69 7.69 35.31 5.12
1990 2532 3.788766 GCGTAAGGTGCAGCCGTG 61.789 66.667 13.29 1.30 43.70 4.94
1994 2536 3.804193 GCTGGCGTAAGGTGCAGC 61.804 66.667 8.11 8.11 38.28 5.25
1995 2537 1.639298 GAAGCTGGCGTAAGGTGCAG 61.639 60.000 0.00 0.00 38.28 4.41
1996 2538 1.671054 GAAGCTGGCGTAAGGTGCA 60.671 57.895 0.00 0.00 38.28 4.57
1997 2539 1.671054 TGAAGCTGGCGTAAGGTGC 60.671 57.895 0.00 0.00 38.28 5.01
1998 2540 1.298859 GGTGAAGCTGGCGTAAGGTG 61.299 60.000 0.00 0.00 38.28 4.00
1999 2541 1.003718 GGTGAAGCTGGCGTAAGGT 60.004 57.895 0.00 0.00 38.28 3.50
2000 2542 2.100631 CGGTGAAGCTGGCGTAAGG 61.101 63.158 0.00 0.00 38.28 2.69
2001 2543 2.740714 GCGGTGAAGCTGGCGTAAG 61.741 63.158 0.00 0.00 43.44 2.34
2002 2544 2.740826 GCGGTGAAGCTGGCGTAA 60.741 61.111 0.00 0.00 0.00 3.18
2003 2545 3.997397 TGCGGTGAAGCTGGCGTA 61.997 61.111 0.00 0.00 38.13 4.42
2007 2549 3.414700 GTCGTGCGGTGAAGCTGG 61.415 66.667 0.00 0.00 38.13 4.85
2008 2550 3.414700 GGTCGTGCGGTGAAGCTG 61.415 66.667 0.00 0.00 38.13 4.24
2009 2551 4.681978 GGGTCGTGCGGTGAAGCT 62.682 66.667 0.00 0.00 38.13 3.74
2011 2553 3.605749 ATGGGGTCGTGCGGTGAAG 62.606 63.158 0.00 0.00 0.00 3.02
2012 2554 3.599285 GATGGGGTCGTGCGGTGAA 62.599 63.158 0.00 0.00 0.00 3.18
2013 2555 4.077184 GATGGGGTCGTGCGGTGA 62.077 66.667 0.00 0.00 0.00 4.02
2018 2560 4.832608 GACGGGATGGGGTCGTGC 62.833 72.222 0.00 0.00 37.25 5.34
2019 2561 4.157120 GGACGGGATGGGGTCGTG 62.157 72.222 0.00 0.00 37.25 4.35
2026 2568 4.838152 CACTGCCGGACGGGATGG 62.838 72.222 5.05 1.33 38.47 3.51
2027 2569 4.838152 CCACTGCCGGACGGGATG 62.838 72.222 5.05 9.70 38.47 3.51
2035 2577 3.774959 CTAGCTACGCCACTGCCGG 62.775 68.421 0.00 0.00 0.00 6.13
2036 2578 2.278857 CTAGCTACGCCACTGCCG 60.279 66.667 0.00 0.00 0.00 5.69
2037 2579 1.749334 ATCCTAGCTACGCCACTGCC 61.749 60.000 0.00 0.00 0.00 4.85
2038 2580 0.105039 AATCCTAGCTACGCCACTGC 59.895 55.000 0.00 0.00 0.00 4.40
2039 2581 2.604046 AAATCCTAGCTACGCCACTG 57.396 50.000 0.00 0.00 0.00 3.66
2040 2582 4.589374 AGATAAAATCCTAGCTACGCCACT 59.411 41.667 0.00 0.00 0.00 4.00
2041 2583 4.884247 AGATAAAATCCTAGCTACGCCAC 58.116 43.478 0.00 0.00 0.00 5.01
2042 2584 4.587262 TGAGATAAAATCCTAGCTACGCCA 59.413 41.667 0.00 0.00 0.00 5.69
2043 2585 5.135508 TGAGATAAAATCCTAGCTACGCC 57.864 43.478 0.00 0.00 0.00 5.68
2044 2586 5.164954 CCTGAGATAAAATCCTAGCTACGC 58.835 45.833 0.00 0.00 0.00 4.42
2045 2587 5.244178 ACCCTGAGATAAAATCCTAGCTACG 59.756 44.000 0.00 0.00 0.00 3.51
2046 2588 6.459923 CACCCTGAGATAAAATCCTAGCTAC 58.540 44.000 0.00 0.00 0.00 3.58
2047 2589 5.544176 CCACCCTGAGATAAAATCCTAGCTA 59.456 44.000 0.00 0.00 0.00 3.32
2048 2590 4.349342 CCACCCTGAGATAAAATCCTAGCT 59.651 45.833 0.00 0.00 0.00 3.32
2049 2591 4.103311 ACCACCCTGAGATAAAATCCTAGC 59.897 45.833 0.00 0.00 0.00 3.42
2050 2592 5.221742 GGACCACCCTGAGATAAAATCCTAG 60.222 48.000 0.00 0.00 0.00 3.02
2051 2593 4.658901 GGACCACCCTGAGATAAAATCCTA 59.341 45.833 0.00 0.00 0.00 2.94
2052 2594 3.459969 GGACCACCCTGAGATAAAATCCT 59.540 47.826 0.00 0.00 0.00 3.24
2053 2595 3.202151 TGGACCACCCTGAGATAAAATCC 59.798 47.826 0.00 0.00 35.38 3.01
2054 2596 4.503714 TGGACCACCCTGAGATAAAATC 57.496 45.455 0.00 0.00 35.38 2.17
2055 2597 4.946160 TTGGACCACCCTGAGATAAAAT 57.054 40.909 0.00 0.00 35.38 1.82
2056 2598 4.946160 ATTGGACCACCCTGAGATAAAA 57.054 40.909 0.00 0.00 35.38 1.52
2057 2599 4.290985 TCAATTGGACCACCCTGAGATAAA 59.709 41.667 5.42 0.00 35.38 1.40
2058 2600 3.849574 TCAATTGGACCACCCTGAGATAA 59.150 43.478 5.42 0.00 35.38 1.75
2059 2601 3.199946 GTCAATTGGACCACCCTGAGATA 59.800 47.826 5.42 0.00 40.83 1.98
2060 2602 2.025887 GTCAATTGGACCACCCTGAGAT 60.026 50.000 5.42 0.00 40.83 2.75
2061 2603 1.351017 GTCAATTGGACCACCCTGAGA 59.649 52.381 5.42 0.00 40.83 3.27
2062 2604 1.073763 TGTCAATTGGACCACCCTGAG 59.926 52.381 5.42 0.00 46.38 3.35
2063 2605 1.073763 CTGTCAATTGGACCACCCTGA 59.926 52.381 5.42 0.00 46.38 3.86
2064 2606 1.538047 CTGTCAATTGGACCACCCTG 58.462 55.000 5.42 0.00 46.38 4.45
2065 2607 0.405585 CCTGTCAATTGGACCACCCT 59.594 55.000 5.42 0.00 46.38 4.34
2066 2608 0.404040 TCCTGTCAATTGGACCACCC 59.596 55.000 5.42 0.00 46.38 4.61
2067 2609 2.286365 TTCCTGTCAATTGGACCACC 57.714 50.000 5.42 0.00 46.38 4.61
2068 2610 4.664150 TTTTTCCTGTCAATTGGACCAC 57.336 40.909 5.42 0.00 46.38 4.16
2088 2630 8.729805 TTAGTTGAATTTGTGGAGCAATTTTT 57.270 26.923 0.00 0.00 36.89 1.94
2089 2631 8.611757 GTTTAGTTGAATTTGTGGAGCAATTTT 58.388 29.630 0.00 0.00 36.89 1.82
2090 2632 7.226523 GGTTTAGTTGAATTTGTGGAGCAATTT 59.773 33.333 0.00 0.00 36.89 1.82
2091 2633 6.705825 GGTTTAGTTGAATTTGTGGAGCAATT 59.294 34.615 0.00 0.00 36.89 2.32
2092 2634 6.183360 TGGTTTAGTTGAATTTGTGGAGCAAT 60.183 34.615 0.00 0.00 36.89 3.56
2093 2635 5.127845 TGGTTTAGTTGAATTTGTGGAGCAA 59.872 36.000 0.00 0.00 34.87 3.91
2094 2636 4.646945 TGGTTTAGTTGAATTTGTGGAGCA 59.353 37.500 0.00 0.00 0.00 4.26
2095 2637 5.195001 TGGTTTAGTTGAATTTGTGGAGC 57.805 39.130 0.00 0.00 0.00 4.70
2096 2638 5.221224 TGCTGGTTTAGTTGAATTTGTGGAG 60.221 40.000 0.00 0.00 0.00 3.86
2097 2639 4.646945 TGCTGGTTTAGTTGAATTTGTGGA 59.353 37.500 0.00 0.00 0.00 4.02
2098 2640 4.942852 TGCTGGTTTAGTTGAATTTGTGG 58.057 39.130 0.00 0.00 0.00 4.17
2099 2641 7.201461 GCATATGCTGGTTTAGTTGAATTTGTG 60.201 37.037 20.64 0.00 38.21 3.33
2100 2642 6.813152 GCATATGCTGGTTTAGTTGAATTTGT 59.187 34.615 20.64 0.00 38.21 2.83
2101 2643 6.812656 TGCATATGCTGGTTTAGTTGAATTTG 59.187 34.615 27.13 0.00 42.66 2.32
2102 2644 6.813152 GTGCATATGCTGGTTTAGTTGAATTT 59.187 34.615 27.13 0.00 42.66 1.82
2103 2645 6.071447 TGTGCATATGCTGGTTTAGTTGAATT 60.071 34.615 27.13 0.00 42.66 2.17
2104 2646 5.418524 TGTGCATATGCTGGTTTAGTTGAAT 59.581 36.000 27.13 0.00 42.66 2.57
2105 2647 4.764308 TGTGCATATGCTGGTTTAGTTGAA 59.236 37.500 27.13 0.26 42.66 2.69
2106 2648 4.155826 GTGTGCATATGCTGGTTTAGTTGA 59.844 41.667 27.13 0.47 42.66 3.18
2107 2649 4.082841 TGTGTGCATATGCTGGTTTAGTTG 60.083 41.667 27.13 0.00 42.66 3.16
2108 2650 4.078537 TGTGTGCATATGCTGGTTTAGTT 58.921 39.130 27.13 0.00 42.66 2.24
2109 2651 3.684908 TGTGTGCATATGCTGGTTTAGT 58.315 40.909 27.13 0.00 42.66 2.24
2110 2652 3.940852 TCTGTGTGCATATGCTGGTTTAG 59.059 43.478 27.13 16.87 42.66 1.85
2111 2653 3.949132 TCTGTGTGCATATGCTGGTTTA 58.051 40.909 27.13 4.09 42.66 2.01
2112 2654 2.794103 TCTGTGTGCATATGCTGGTTT 58.206 42.857 27.13 0.00 42.66 3.27
2113 2655 2.495155 TCTGTGTGCATATGCTGGTT 57.505 45.000 27.13 0.00 42.66 3.67
2114 2656 2.495155 TTCTGTGTGCATATGCTGGT 57.505 45.000 27.13 0.00 42.66 4.00
2115 2657 6.596497 TGATATATTCTGTGTGCATATGCTGG 59.404 38.462 27.13 12.83 42.66 4.85
2116 2658 7.605410 TGATATATTCTGTGTGCATATGCTG 57.395 36.000 27.13 12.58 42.66 4.41
2117 2659 8.803397 ATTGATATATTCTGTGTGCATATGCT 57.197 30.769 27.13 8.06 42.66 3.79
2122 2664 9.224267 GACCTTATTGATATATTCTGTGTGCAT 57.776 33.333 0.00 0.00 0.00 3.96
2123 2665 8.432013 AGACCTTATTGATATATTCTGTGTGCA 58.568 33.333 0.00 0.00 0.00 4.57
2124 2666 8.839310 AGACCTTATTGATATATTCTGTGTGC 57.161 34.615 0.00 0.00 0.00 4.57
2164 2706 9.353999 GCGAATTTAAGACTTAACCATGAATTT 57.646 29.630 7.17 0.00 0.00 1.82
2165 2707 7.696453 CGCGAATTTAAGACTTAACCATGAATT 59.304 33.333 0.00 3.99 0.00 2.17
2166 2708 7.148306 ACGCGAATTTAAGACTTAACCATGAAT 60.148 33.333 15.93 0.00 0.00 2.57
2167 2709 6.148150 ACGCGAATTTAAGACTTAACCATGAA 59.852 34.615 15.93 0.00 0.00 2.57
2168 2710 5.640357 ACGCGAATTTAAGACTTAACCATGA 59.360 36.000 15.93 0.00 0.00 3.07
2169 2711 5.864986 ACGCGAATTTAAGACTTAACCATG 58.135 37.500 15.93 0.64 0.00 3.66
2170 2712 7.599630 TTACGCGAATTTAAGACTTAACCAT 57.400 32.000 15.93 0.00 0.00 3.55
2171 2713 7.418840 TTTACGCGAATTTAAGACTTAACCA 57.581 32.000 15.93 0.00 0.00 3.67
2172 2714 8.360757 CTTTTACGCGAATTTAAGACTTAACC 57.639 34.615 15.93 0.25 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.