Multiple sequence alignment - TraesCS2D01G430200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G430200 chr2D 100.000 2231 0 0 1 2231 542542934 542545164 0.000000e+00 4120.0
1 TraesCS2D01G430200 chr2D 87.646 858 55 16 750 1588 542328528 542329353 0.000000e+00 950.0
2 TraesCS2D01G430200 chr2D 83.887 813 62 37 821 1587 542710333 542711122 0.000000e+00 712.0
3 TraesCS2D01G430200 chr2D 86.323 446 29 17 821 1235 542777781 542778225 7.260000e-125 457.0
4 TraesCS2D01G430200 chr2D 91.611 298 14 5 1544 1838 542711107 542711396 3.450000e-108 401.0
5 TraesCS2D01G430200 chr2D 90.584 308 15 8 1544 1838 542329337 542329643 1.610000e-106 396.0
6 TraesCS2D01G430200 chr2D 89.041 219 12 6 2018 2231 542330054 542330265 6.110000e-66 261.0
7 TraesCS2D01G430200 chr2D 87.678 211 14 6 2021 2231 542711835 542712033 3.700000e-58 235.0
8 TraesCS2D01G430200 chr2D 93.243 148 7 1 1835 1979 542329675 542329822 4.830000e-52 215.0
9 TraesCS2D01G430200 chr2D 88.742 151 14 3 1383 1531 542778401 542778550 4.890000e-42 182.0
10 TraesCS2D01G430200 chr2D 88.966 145 6 1 1835 1979 542711428 542711562 1.060000e-38 171.0
11 TraesCS2D01G430200 chr2A 85.097 1134 77 39 744 1852 685373374 685374440 0.000000e+00 1074.0
12 TraesCS2D01G430200 chr2A 84.713 1027 73 35 827 1838 685380419 685381376 0.000000e+00 950.0
13 TraesCS2D01G430200 chr2A 94.966 298 15 0 1 298 748777876 748777579 3.350000e-128 468.0
14 TraesCS2D01G430200 chr2A 84.400 500 44 23 894 1368 685626706 685627196 5.610000e-126 460.0
15 TraesCS2D01G430200 chr2A 80.030 671 54 42 862 1454 685491357 685492025 7.360000e-115 424.0
16 TraesCS2D01G430200 chr2A 88.398 362 19 11 894 1232 685410525 685410886 4.430000e-112 414.0
17 TraesCS2D01G430200 chr2A 89.796 245 16 6 365 608 685380007 685380243 2.780000e-79 305.0
18 TraesCS2D01G430200 chr2A 89.732 224 11 4 2018 2231 685381875 685382096 2.180000e-70 276.0
19 TraesCS2D01G430200 chr2A 85.271 129 7 5 1854 1970 685374499 685374627 3.010000e-24 122.0
20 TraesCS2D01G430200 chr2A 93.220 59 4 0 740 798 685380363 685380421 1.100000e-13 87.9
21 TraesCS2D01G430200 chr2A 90.566 53 5 0 1430 1482 685411060 685411112 1.110000e-08 71.3
22 TraesCS2D01G430200 chr2B 90.035 853 49 19 750 1587 647450790 647451621 0.000000e+00 1072.0
23 TraesCS2D01G430200 chr2B 84.262 610 45 20 701 1288 647538765 647539345 4.190000e-152 547.0
24 TraesCS2D01G430200 chr2B 81.117 609 54 38 821 1372 647603639 647604243 4.400000e-117 431.0
25 TraesCS2D01G430200 chr2B 90.705 312 21 8 1544 1852 647539716 647540022 2.060000e-110 409.0
26 TraesCS2D01G430200 chr2B 83.298 473 25 20 1544 1979 647451633 647452088 9.660000e-104 387.0
27 TraesCS2D01G430200 chr2B 88.235 289 20 6 1312 1587 647539444 647539731 1.280000e-87 333.0
28 TraesCS2D01G430200 chr2B 89.498 219 14 6 2018 2231 647452410 647452624 3.650000e-68 268.0
29 TraesCS2D01G430200 chr2B 89.498 219 14 6 2018 2231 647540925 647541139 3.650000e-68 268.0
30 TraesCS2D01G430200 chr2B 96.610 118 4 0 1835 1952 647540041 647540158 1.750000e-46 196.0
31 TraesCS2D01G430200 chr2B 90.714 140 10 3 445 581 647538347 647538486 1.360000e-42 183.0
32 TraesCS2D01G430200 chr3D 94.983 299 14 1 1 298 123643534 123643832 3.350000e-128 468.0
33 TraesCS2D01G430200 chr3D 93.851 309 19 0 1 309 43726549 43726857 1.210000e-127 466.0
34 TraesCS2D01G430200 chr3A 94.175 309 15 3 1 307 743839575 743839268 3.350000e-128 468.0
35 TraesCS2D01G430200 chr6D 94.667 300 16 0 1 300 109267108 109267407 1.210000e-127 466.0
36 TraesCS2D01G430200 chr6D 94.684 301 15 1 1 301 467981815 467981516 1.210000e-127 466.0
37 TraesCS2D01G430200 chr6D 93.548 310 18 2 1 308 78770084 78770393 5.610000e-126 460.0
38 TraesCS2D01G430200 chr4D 94.667 300 16 0 1 300 3384698 3384997 1.210000e-127 466.0
39 TraesCS2D01G430200 chr5D 92.331 326 22 3 1 324 106970290 106970614 5.610000e-126 460.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G430200 chr2D 542542934 542545164 2230 False 4120.000000 4120 100.000000 1 2231 1 chr2D.!!$F1 2230
1 TraesCS2D01G430200 chr2D 542328528 542330265 1737 False 455.500000 950 90.128500 750 2231 4 chr2D.!!$F2 1481
2 TraesCS2D01G430200 chr2D 542710333 542712033 1700 False 379.750000 712 88.035500 821 2231 4 chr2D.!!$F3 1410
3 TraesCS2D01G430200 chr2D 542777781 542778550 769 False 319.500000 457 87.532500 821 1531 2 chr2D.!!$F4 710
4 TraesCS2D01G430200 chr2A 685373374 685374627 1253 False 598.000000 1074 85.184000 744 1970 2 chr2A.!!$F3 1226
5 TraesCS2D01G430200 chr2A 685491357 685492025 668 False 424.000000 424 80.030000 862 1454 1 chr2A.!!$F1 592
6 TraesCS2D01G430200 chr2A 685380007 685382096 2089 False 404.725000 950 89.365250 365 2231 4 chr2A.!!$F4 1866
7 TraesCS2D01G430200 chr2A 685410525 685411112 587 False 242.650000 414 89.482000 894 1482 2 chr2A.!!$F5 588
8 TraesCS2D01G430200 chr2B 647450790 647452624 1834 False 575.666667 1072 87.610333 750 2231 3 chr2B.!!$F2 1481
9 TraesCS2D01G430200 chr2B 647603639 647604243 604 False 431.000000 431 81.117000 821 1372 1 chr2B.!!$F1 551
10 TraesCS2D01G430200 chr2B 647538347 647541139 2792 False 322.666667 547 90.004000 445 2231 6 chr2B.!!$F3 1786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.034059 GGGGCATGGTGTATCGAGAG 59.966 60.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1928 0.179215 CCAGTTTTGCAGCGATCGAC 60.179 55.0 21.57 10.46 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.059982 TCCTGGTTGAGGAGTGCG 58.940 61.111 0.00 0.00 46.96 5.34
25 26 2.743928 CCTGGTTGAGGAGTGCGC 60.744 66.667 0.00 0.00 46.33 6.09
26 27 2.743928 CTGGTTGAGGAGTGCGCC 60.744 66.667 4.18 0.00 0.00 6.53
27 28 4.680237 TGGTTGAGGAGTGCGCCG 62.680 66.667 4.18 0.00 0.00 6.46
29 30 4.373116 GTTGAGGAGTGCGCCGGA 62.373 66.667 5.05 0.00 0.00 5.14
30 31 4.373116 TTGAGGAGTGCGCCGGAC 62.373 66.667 5.05 0.00 0.00 4.79
32 33 4.803426 GAGGAGTGCGCCGGACTG 62.803 72.222 18.13 0.00 0.00 3.51
34 35 4.681978 GGAGTGCGCCGGACTGTT 62.682 66.667 18.13 0.00 0.00 3.16
35 36 2.260434 GAGTGCGCCGGACTGTTA 59.740 61.111 18.13 0.00 0.00 2.41
36 37 1.805945 GAGTGCGCCGGACTGTTAG 60.806 63.158 18.13 0.00 0.00 2.34
37 38 2.813908 GTGCGCCGGACTGTTAGG 60.814 66.667 5.05 0.00 0.00 2.69
38 39 3.307906 TGCGCCGGACTGTTAGGT 61.308 61.111 5.05 0.00 0.00 3.08
39 40 2.813908 GCGCCGGACTGTTAGGTG 60.814 66.667 5.05 10.42 38.48 4.00
40 41 2.813908 CGCCGGACTGTTAGGTGC 60.814 66.667 5.05 0.00 0.00 5.01
41 42 2.436115 GCCGGACTGTTAGGTGCC 60.436 66.667 5.05 0.00 0.00 5.01
42 43 2.267961 CCGGACTGTTAGGTGCCC 59.732 66.667 0.00 0.00 0.00 5.36
43 44 2.267961 CGGACTGTTAGGTGCCCC 59.732 66.667 0.00 0.00 0.00 5.80
44 45 2.589157 CGGACTGTTAGGTGCCCCA 61.589 63.158 0.00 0.00 0.00 4.96
45 46 1.910580 CGGACTGTTAGGTGCCCCAT 61.911 60.000 0.00 0.00 0.00 4.00
46 47 1.209621 GGACTGTTAGGTGCCCCATA 58.790 55.000 0.00 0.00 0.00 2.74
47 48 1.134189 GGACTGTTAGGTGCCCCATAC 60.134 57.143 0.00 0.00 0.00 2.39
48 49 0.916809 ACTGTTAGGTGCCCCATACC 59.083 55.000 0.00 0.00 38.52 2.73
49 50 0.182775 CTGTTAGGTGCCCCATACCC 59.817 60.000 0.00 0.00 39.05 3.69
50 51 1.147600 GTTAGGTGCCCCATACCCG 59.852 63.158 0.00 0.00 39.05 5.28
51 52 2.073716 TTAGGTGCCCCATACCCGG 61.074 63.158 0.00 0.00 39.05 5.73
59 60 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
60 61 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
75 76 4.232905 TCCTGGTTGGGACCTCAG 57.767 61.111 0.00 0.00 46.66 3.35
76 77 1.538876 TCCTGGTTGGGACCTCAGG 60.539 63.158 15.03 15.03 46.66 3.86
77 78 1.847968 CCTGGTTGGGACCTCAGGT 60.848 63.158 0.00 0.00 46.66 4.00
94 95 8.625467 ACCTCAGGTCTTAGATATTTAGGTTT 57.375 34.615 0.00 0.00 29.47 3.27
95 96 8.487028 ACCTCAGGTCTTAGATATTTAGGTTTG 58.513 37.037 0.00 0.00 29.47 2.93
96 97 7.934120 CCTCAGGTCTTAGATATTTAGGTTTGG 59.066 40.741 0.00 0.00 0.00 3.28
97 98 7.280356 TCAGGTCTTAGATATTTAGGTTTGGC 58.720 38.462 0.00 0.00 0.00 4.52
98 99 7.127339 TCAGGTCTTAGATATTTAGGTTTGGCT 59.873 37.037 0.00 0.00 0.00 4.75
99 100 7.227512 CAGGTCTTAGATATTTAGGTTTGGCTG 59.772 40.741 0.00 0.00 0.00 4.85
100 101 6.017026 GGTCTTAGATATTTAGGTTTGGCTGC 60.017 42.308 0.00 0.00 0.00 5.25
101 102 6.542370 GTCTTAGATATTTAGGTTTGGCTGCA 59.458 38.462 0.50 0.00 0.00 4.41
102 103 7.067008 GTCTTAGATATTTAGGTTTGGCTGCAA 59.933 37.037 0.50 0.00 0.00 4.08
103 104 7.779798 TCTTAGATATTTAGGTTTGGCTGCAAT 59.220 33.333 0.50 0.00 0.00 3.56
104 105 6.152932 AGATATTTAGGTTTGGCTGCAATG 57.847 37.500 0.50 0.00 0.00 2.82
105 106 5.658190 AGATATTTAGGTTTGGCTGCAATGT 59.342 36.000 0.50 0.00 0.00 2.71
106 107 3.658757 TTTAGGTTTGGCTGCAATGTC 57.341 42.857 0.50 0.00 0.00 3.06
107 108 2.584835 TAGGTTTGGCTGCAATGTCT 57.415 45.000 0.50 0.00 0.00 3.41
108 109 0.963962 AGGTTTGGCTGCAATGTCTG 59.036 50.000 0.50 0.00 0.00 3.51
109 110 0.675633 GGTTTGGCTGCAATGTCTGT 59.324 50.000 0.50 0.00 0.00 3.41
110 111 1.069049 GGTTTGGCTGCAATGTCTGTT 59.931 47.619 0.50 0.00 0.00 3.16
111 112 2.483538 GGTTTGGCTGCAATGTCTGTTT 60.484 45.455 0.50 0.00 0.00 2.83
112 113 2.512485 TTGGCTGCAATGTCTGTTTG 57.488 45.000 0.50 0.00 0.00 2.93
113 114 0.675083 TGGCTGCAATGTCTGTTTGG 59.325 50.000 0.50 0.00 0.00 3.28
114 115 0.675633 GGCTGCAATGTCTGTTTGGT 59.324 50.000 0.50 0.00 0.00 3.67
115 116 1.885887 GGCTGCAATGTCTGTTTGGTA 59.114 47.619 0.50 0.00 0.00 3.25
116 117 2.493278 GGCTGCAATGTCTGTTTGGTAT 59.507 45.455 0.50 0.00 0.00 2.73
117 118 3.056607 GGCTGCAATGTCTGTTTGGTATT 60.057 43.478 0.50 0.00 0.00 1.89
118 119 4.157656 GGCTGCAATGTCTGTTTGGTATTA 59.842 41.667 0.50 0.00 0.00 0.98
119 120 5.335127 GCTGCAATGTCTGTTTGGTATTAG 58.665 41.667 0.00 0.00 0.00 1.73
120 121 5.677091 GCTGCAATGTCTGTTTGGTATTAGG 60.677 44.000 0.00 0.00 0.00 2.69
121 122 4.157656 TGCAATGTCTGTTTGGTATTAGGC 59.842 41.667 0.00 0.00 0.00 3.93
122 123 4.440112 GCAATGTCTGTTTGGTATTAGGCC 60.440 45.833 0.00 0.00 0.00 5.19
123 124 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
124 125 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
125 126 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
126 127 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
127 128 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
128 129 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
129 130 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
130 131 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
131 132 5.163237 TGTTTGGTATTAGGCCCAGACTATC 60.163 44.000 0.00 0.00 36.91 2.08
132 133 4.487282 TGGTATTAGGCCCAGACTATCT 57.513 45.455 0.00 0.00 0.00 1.98
133 134 4.160329 TGGTATTAGGCCCAGACTATCTG 58.840 47.826 0.00 0.00 43.91 2.90
134 135 3.055747 GGTATTAGGCCCAGACTATCTGC 60.056 52.174 0.00 0.00 42.98 4.26
135 136 1.040646 TTAGGCCCAGACTATCTGCG 58.959 55.000 0.00 0.00 42.98 5.18
136 137 1.464376 TAGGCCCAGACTATCTGCGC 61.464 60.000 0.00 0.00 45.03 6.09
137 138 2.280457 GCCCAGACTATCTGCGCC 60.280 66.667 4.18 0.00 41.19 6.53
138 139 2.423446 CCCAGACTATCTGCGCCC 59.577 66.667 4.18 0.00 42.98 6.13
139 140 2.423446 CCAGACTATCTGCGCCCC 59.577 66.667 4.18 0.00 42.98 5.80
140 141 2.136878 CCAGACTATCTGCGCCCCT 61.137 63.158 4.18 0.00 42.98 4.79
141 142 1.690219 CCAGACTATCTGCGCCCCTT 61.690 60.000 4.18 0.00 42.98 3.95
142 143 0.249657 CAGACTATCTGCGCCCCTTC 60.250 60.000 4.18 0.00 37.72 3.46
143 144 0.687757 AGACTATCTGCGCCCCTTCA 60.688 55.000 4.18 0.00 0.00 3.02
144 145 0.394565 GACTATCTGCGCCCCTTCAT 59.605 55.000 4.18 0.00 0.00 2.57
145 146 0.394565 ACTATCTGCGCCCCTTCATC 59.605 55.000 4.18 0.00 0.00 2.92
146 147 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
147 148 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
148 149 0.184451 ATCTGCGCCCCTTCATCAAT 59.816 50.000 4.18 0.00 0.00 2.57
149 150 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.000 4.18 0.00 0.00 2.32
150 151 0.101759 CTGCGCCCCTTCATCAATTG 59.898 55.000 4.18 0.00 0.00 2.32
151 152 1.321805 TGCGCCCCTTCATCAATTGG 61.322 55.000 4.18 0.00 0.00 3.16
152 153 1.037030 GCGCCCCTTCATCAATTGGA 61.037 55.000 5.42 0.00 0.00 3.53
153 154 1.696063 CGCCCCTTCATCAATTGGAT 58.304 50.000 5.42 0.00 36.39 3.41
154 155 2.862541 CGCCCCTTCATCAATTGGATA 58.137 47.619 5.42 0.00 33.95 2.59
155 156 2.816087 CGCCCCTTCATCAATTGGATAG 59.184 50.000 5.42 0.00 33.95 2.08
156 157 3.160269 GCCCCTTCATCAATTGGATAGG 58.840 50.000 5.42 7.57 33.95 2.57
157 158 3.437052 GCCCCTTCATCAATTGGATAGGT 60.437 47.826 5.42 0.00 32.05 3.08
158 159 4.202567 GCCCCTTCATCAATTGGATAGGTA 60.203 45.833 5.42 0.00 32.05 3.08
159 160 5.517299 GCCCCTTCATCAATTGGATAGGTAT 60.517 44.000 5.42 0.00 32.05 2.73
160 161 6.297010 GCCCCTTCATCAATTGGATAGGTATA 60.297 42.308 5.42 0.00 32.05 1.47
161 162 7.586181 GCCCCTTCATCAATTGGATAGGTATAT 60.586 40.741 5.42 0.00 32.05 0.86
162 163 7.995488 CCCCTTCATCAATTGGATAGGTATATC 59.005 40.741 5.42 0.00 37.64 1.63
163 164 7.712639 CCCTTCATCAATTGGATAGGTATATCG 59.287 40.741 5.42 0.00 39.02 2.92
164 165 8.478066 CCTTCATCAATTGGATAGGTATATCGA 58.522 37.037 5.42 0.00 39.02 3.59
165 166 9.307121 CTTCATCAATTGGATAGGTATATCGAC 57.693 37.037 5.42 0.00 39.02 4.20
166 167 8.361169 TCATCAATTGGATAGGTATATCGACA 57.639 34.615 5.42 0.00 39.02 4.35
167 168 8.470002 TCATCAATTGGATAGGTATATCGACAG 58.530 37.037 5.42 0.00 39.02 3.51
168 169 7.776618 TCAATTGGATAGGTATATCGACAGT 57.223 36.000 5.42 0.00 39.02 3.55
169 170 8.190326 TCAATTGGATAGGTATATCGACAGTT 57.810 34.615 5.42 0.00 39.02 3.16
170 171 8.088365 TCAATTGGATAGGTATATCGACAGTTG 58.912 37.037 5.42 0.00 39.02 3.16
171 172 6.971726 TTGGATAGGTATATCGACAGTTGT 57.028 37.500 0.00 0.00 39.02 3.32
172 173 6.971726 TGGATAGGTATATCGACAGTTGTT 57.028 37.500 0.00 0.00 39.02 2.83
173 174 6.745116 TGGATAGGTATATCGACAGTTGTTG 58.255 40.000 0.00 0.00 39.02 3.33
174 175 5.634020 GGATAGGTATATCGACAGTTGTTGC 59.366 44.000 0.00 0.00 39.02 4.17
175 176 4.737855 AGGTATATCGACAGTTGTTGCT 57.262 40.909 0.00 0.00 0.00 3.91
176 177 5.086104 AGGTATATCGACAGTTGTTGCTT 57.914 39.130 0.00 0.00 0.00 3.91
177 178 6.216801 AGGTATATCGACAGTTGTTGCTTA 57.783 37.500 0.00 0.00 0.00 3.09
178 179 6.273825 AGGTATATCGACAGTTGTTGCTTAG 58.726 40.000 0.00 0.00 0.00 2.18
179 180 6.096423 AGGTATATCGACAGTTGTTGCTTAGA 59.904 38.462 0.00 0.00 0.00 2.10
180 181 6.198591 GGTATATCGACAGTTGTTGCTTAGAC 59.801 42.308 0.00 0.00 0.00 2.59
181 182 2.390938 TCGACAGTTGTTGCTTAGACG 58.609 47.619 0.00 0.00 0.00 4.18
182 183 1.455786 CGACAGTTGTTGCTTAGACGG 59.544 52.381 0.00 0.00 0.00 4.79
183 184 2.480845 GACAGTTGTTGCTTAGACGGT 58.519 47.619 0.00 0.00 0.00 4.83
184 185 2.210116 ACAGTTGTTGCTTAGACGGTG 58.790 47.619 0.00 0.00 0.00 4.94
185 186 1.531149 CAGTTGTTGCTTAGACGGTGG 59.469 52.381 0.00 0.00 0.00 4.61
186 187 0.237498 GTTGTTGCTTAGACGGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
187 188 0.107831 TTGTTGCTTAGACGGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
188 189 0.107831 TGTTGCTTAGACGGTGGCTT 59.892 50.000 0.00 0.00 0.00 4.35
189 190 1.235724 GTTGCTTAGACGGTGGCTTT 58.764 50.000 0.00 0.00 0.00 3.51
190 191 2.224329 TGTTGCTTAGACGGTGGCTTTA 60.224 45.455 0.00 0.00 0.00 1.85
191 192 3.007635 GTTGCTTAGACGGTGGCTTTAT 58.992 45.455 0.00 0.00 0.00 1.40
192 193 3.343941 TGCTTAGACGGTGGCTTTATT 57.656 42.857 0.00 0.00 0.00 1.40
193 194 3.267483 TGCTTAGACGGTGGCTTTATTC 58.733 45.455 0.00 0.00 0.00 1.75
194 195 3.055385 TGCTTAGACGGTGGCTTTATTCT 60.055 43.478 0.00 0.00 0.00 2.40
195 196 3.939592 GCTTAGACGGTGGCTTTATTCTT 59.060 43.478 0.00 0.00 0.00 2.52
196 197 4.201822 GCTTAGACGGTGGCTTTATTCTTG 60.202 45.833 0.00 0.00 0.00 3.02
197 198 2.084546 AGACGGTGGCTTTATTCTTGC 58.915 47.619 0.00 0.00 0.00 4.01
198 199 2.084546 GACGGTGGCTTTATTCTTGCT 58.915 47.619 0.00 0.00 0.00 3.91
199 200 1.812571 ACGGTGGCTTTATTCTTGCTG 59.187 47.619 0.00 0.00 0.00 4.41
200 201 1.812571 CGGTGGCTTTATTCTTGCTGT 59.187 47.619 0.00 0.00 0.00 4.40
201 202 2.228822 CGGTGGCTTTATTCTTGCTGTT 59.771 45.455 0.00 0.00 0.00 3.16
202 203 3.578688 GGTGGCTTTATTCTTGCTGTTG 58.421 45.455 0.00 0.00 0.00 3.33
203 204 3.005791 GGTGGCTTTATTCTTGCTGTTGT 59.994 43.478 0.00 0.00 0.00 3.32
204 205 4.217550 GGTGGCTTTATTCTTGCTGTTGTA 59.782 41.667 0.00 0.00 0.00 2.41
205 206 5.105756 GGTGGCTTTATTCTTGCTGTTGTAT 60.106 40.000 0.00 0.00 0.00 2.29
206 207 5.801947 GTGGCTTTATTCTTGCTGTTGTATG 59.198 40.000 0.00 0.00 0.00 2.39
207 208 5.105797 TGGCTTTATTCTTGCTGTTGTATGG 60.106 40.000 0.00 0.00 0.00 2.74
208 209 4.800471 GCTTTATTCTTGCTGTTGTATGGC 59.200 41.667 0.00 0.00 0.00 4.40
209 210 5.393461 GCTTTATTCTTGCTGTTGTATGGCT 60.393 40.000 0.00 0.00 0.00 4.75
210 211 6.588719 TTTATTCTTGCTGTTGTATGGCTT 57.411 33.333 0.00 0.00 0.00 4.35
211 212 6.588719 TTATTCTTGCTGTTGTATGGCTTT 57.411 33.333 0.00 0.00 0.00 3.51
212 213 7.695480 TTATTCTTGCTGTTGTATGGCTTTA 57.305 32.000 0.00 0.00 0.00 1.85
213 214 6.780457 ATTCTTGCTGTTGTATGGCTTTAT 57.220 33.333 0.00 0.00 0.00 1.40
214 215 7.880160 ATTCTTGCTGTTGTATGGCTTTATA 57.120 32.000 0.00 0.00 0.00 0.98
215 216 7.695480 TTCTTGCTGTTGTATGGCTTTATAA 57.305 32.000 0.00 0.00 0.00 0.98
216 217 7.320443 TCTTGCTGTTGTATGGCTTTATAAG 57.680 36.000 0.00 0.00 0.00 1.73
217 218 6.318648 TCTTGCTGTTGTATGGCTTTATAAGG 59.681 38.462 0.00 0.00 0.00 2.69
218 219 5.505780 TGCTGTTGTATGGCTTTATAAGGT 58.494 37.500 0.00 0.00 0.00 3.50
219 220 5.588648 TGCTGTTGTATGGCTTTATAAGGTC 59.411 40.000 0.00 0.00 0.00 3.85
220 221 5.823045 GCTGTTGTATGGCTTTATAAGGTCT 59.177 40.000 0.62 0.00 0.00 3.85
221 222 6.318900 GCTGTTGTATGGCTTTATAAGGTCTT 59.681 38.462 0.62 0.00 0.00 3.01
222 223 7.624360 TGTTGTATGGCTTTATAAGGTCTTG 57.376 36.000 0.62 0.00 0.00 3.02
223 224 7.172342 TGTTGTATGGCTTTATAAGGTCTTGT 58.828 34.615 0.62 0.00 0.00 3.16
224 225 7.120579 TGTTGTATGGCTTTATAAGGTCTTGTG 59.879 37.037 0.62 0.00 0.00 3.33
225 226 6.953101 TGTATGGCTTTATAAGGTCTTGTGA 58.047 36.000 0.62 0.00 0.00 3.58
226 227 7.047891 TGTATGGCTTTATAAGGTCTTGTGAG 58.952 38.462 0.62 0.00 0.00 3.51
227 228 5.755409 TGGCTTTATAAGGTCTTGTGAGA 57.245 39.130 0.62 0.00 0.00 3.27
228 229 6.121776 TGGCTTTATAAGGTCTTGTGAGAA 57.878 37.500 0.62 0.00 32.66 2.87
229 230 6.721318 TGGCTTTATAAGGTCTTGTGAGAAT 58.279 36.000 0.62 0.00 32.66 2.40
230 231 7.857456 TGGCTTTATAAGGTCTTGTGAGAATA 58.143 34.615 0.62 0.00 32.66 1.75
231 232 8.325787 TGGCTTTATAAGGTCTTGTGAGAATAA 58.674 33.333 0.62 0.00 32.66 1.40
232 233 9.343539 GGCTTTATAAGGTCTTGTGAGAATAAT 57.656 33.333 0.00 0.00 32.66 1.28
247 248 9.661563 TGTGAGAATAATTAATAAAGTGTCCGT 57.338 29.630 0.00 0.00 0.00 4.69
256 257 2.919666 AAAGTGTCCGTATGCATTGC 57.080 45.000 3.54 0.46 0.00 3.56
257 258 1.094785 AAGTGTCCGTATGCATTGCC 58.905 50.000 3.54 0.00 0.00 4.52
258 259 0.748005 AGTGTCCGTATGCATTGCCC 60.748 55.000 3.54 0.00 0.00 5.36
259 260 1.029408 GTGTCCGTATGCATTGCCCA 61.029 55.000 3.54 0.00 0.00 5.36
260 261 0.747644 TGTCCGTATGCATTGCCCAG 60.748 55.000 3.54 0.00 0.00 4.45
261 262 0.463654 GTCCGTATGCATTGCCCAGA 60.464 55.000 3.54 0.00 0.00 3.86
262 263 0.473755 TCCGTATGCATTGCCCAGAT 59.526 50.000 3.54 0.00 0.00 2.90
263 264 0.594602 CCGTATGCATTGCCCAGATG 59.405 55.000 3.54 0.00 0.00 2.90
267 268 3.929002 GCATTGCCCAGATGCAGA 58.071 55.556 0.00 0.00 46.96 4.26
268 269 1.734137 GCATTGCCCAGATGCAGAG 59.266 57.895 0.00 0.00 46.96 3.35
269 270 1.735376 GCATTGCCCAGATGCAGAGG 61.735 60.000 0.00 0.00 46.96 3.69
270 271 1.455217 ATTGCCCAGATGCAGAGGC 60.455 57.895 11.10 11.10 43.21 4.70
271 272 1.934459 ATTGCCCAGATGCAGAGGCT 61.934 55.000 16.96 0.00 45.94 4.58
272 273 2.516460 GCCCAGATGCAGAGGCTG 60.516 66.667 10.82 6.73 42.34 4.85
273 274 2.192443 CCCAGATGCAGAGGCTGG 59.808 66.667 16.49 16.49 46.83 4.85
274 275 2.192443 CCAGATGCAGAGGCTGGG 59.808 66.667 15.93 0.00 44.24 4.45
275 276 2.192443 CAGATGCAGAGGCTGGGG 59.808 66.667 0.00 0.00 41.91 4.96
276 277 3.095163 AGATGCAGAGGCTGGGGG 61.095 66.667 0.00 0.00 41.91 5.40
277 278 3.415087 GATGCAGAGGCTGGGGGT 61.415 66.667 0.00 0.00 41.91 4.95
278 279 3.412624 GATGCAGAGGCTGGGGGTC 62.413 68.421 0.00 0.00 41.91 4.46
279 280 4.980592 TGCAGAGGCTGGGGGTCA 62.981 66.667 0.00 0.00 41.91 4.02
280 281 3.415087 GCAGAGGCTGGGGGTCAT 61.415 66.667 0.00 0.00 36.96 3.06
281 282 2.914289 CAGAGGCTGGGGGTCATC 59.086 66.667 0.00 0.00 0.00 2.92
282 283 2.367512 AGAGGCTGGGGGTCATCC 60.368 66.667 0.00 0.00 32.00 3.51
283 284 2.367512 GAGGCTGGGGGTCATCCT 60.368 66.667 0.00 0.00 44.07 3.24
284 285 2.367512 AGGCTGGGGGTCATCCTC 60.368 66.667 0.00 0.00 37.42 3.71
285 286 2.367512 GGCTGGGGGTCATCCTCT 60.368 66.667 0.00 0.00 36.78 3.69
286 287 2.003548 GGCTGGGGGTCATCCTCTT 61.004 63.158 0.00 0.00 36.78 2.85
287 288 1.575447 GGCTGGGGGTCATCCTCTTT 61.575 60.000 0.00 0.00 36.78 2.52
288 289 0.332972 GCTGGGGGTCATCCTCTTTT 59.667 55.000 0.00 0.00 36.78 2.27
289 290 1.272704 GCTGGGGGTCATCCTCTTTTT 60.273 52.381 0.00 0.00 36.78 1.94
290 291 2.728007 CTGGGGGTCATCCTCTTTTTC 58.272 52.381 0.00 0.00 36.78 2.29
291 292 1.357761 TGGGGGTCATCCTCTTTTTCC 59.642 52.381 0.00 0.00 36.78 3.13
292 293 1.357761 GGGGGTCATCCTCTTTTTCCA 59.642 52.381 0.00 0.00 33.94 3.53
293 294 2.225267 GGGGGTCATCCTCTTTTTCCAA 60.225 50.000 0.00 0.00 33.94 3.53
294 295 3.506398 GGGGTCATCCTCTTTTTCCAAA 58.494 45.455 0.00 0.00 35.33 3.28
295 296 3.901222 GGGGTCATCCTCTTTTTCCAAAA 59.099 43.478 0.00 0.00 35.33 2.44
296 297 4.346709 GGGGTCATCCTCTTTTTCCAAAAA 59.653 41.667 0.00 0.00 34.81 1.94
318 319 6.894339 AAAAAGTTGATGAAACCCTATCGT 57.106 33.333 0.00 0.00 39.85 3.73
319 320 6.496338 AAAAGTTGATGAAACCCTATCGTC 57.504 37.500 0.00 0.00 39.85 4.20
320 321 5.422214 AAGTTGATGAAACCCTATCGTCT 57.578 39.130 0.00 0.00 39.85 4.18
321 322 6.540438 AAGTTGATGAAACCCTATCGTCTA 57.460 37.500 0.00 0.00 39.85 2.59
322 323 6.540438 AGTTGATGAAACCCTATCGTCTAA 57.460 37.500 0.00 0.00 39.85 2.10
323 324 6.942976 AGTTGATGAAACCCTATCGTCTAAA 58.057 36.000 0.00 0.00 39.85 1.85
324 325 7.565680 AGTTGATGAAACCCTATCGTCTAAAT 58.434 34.615 0.00 0.00 39.85 1.40
325 326 8.047310 AGTTGATGAAACCCTATCGTCTAAATT 58.953 33.333 0.00 0.00 39.85 1.82
326 327 9.321562 GTTGATGAAACCCTATCGTCTAAATTA 57.678 33.333 0.00 0.00 34.58 1.40
327 328 9.893634 TTGATGAAACCCTATCGTCTAAATTAA 57.106 29.630 0.00 0.00 34.58 1.40
357 358 9.753674 ATTTTTGTATCTTGAAAGGATAGTGGA 57.246 29.630 0.00 0.00 0.00 4.02
358 359 9.581289 TTTTTGTATCTTGAAAGGATAGTGGAA 57.419 29.630 0.00 0.00 0.00 3.53
359 360 9.581289 TTTTGTATCTTGAAAGGATAGTGGAAA 57.419 29.630 0.00 0.00 0.00 3.13
360 361 8.561738 TTGTATCTTGAAAGGATAGTGGAAAC 57.438 34.615 0.00 0.00 0.00 2.78
361 362 7.918076 TGTATCTTGAAAGGATAGTGGAAACT 58.082 34.615 0.00 0.00 0.00 2.66
362 363 8.383175 TGTATCTTGAAAGGATAGTGGAAACTT 58.617 33.333 0.00 0.00 0.00 2.66
363 364 7.929941 ATCTTGAAAGGATAGTGGAAACTTC 57.070 36.000 0.00 0.00 0.00 3.01
390 391 0.034059 GGGGCATGGTGTATCGAGAG 59.966 60.000 0.00 0.00 0.00 3.20
414 415 8.564509 AGATACGGGAGAACAACTATATCTAC 57.435 38.462 0.00 0.00 0.00 2.59
425 426 8.777578 AACAACTATATCTACACTATCACCCA 57.222 34.615 0.00 0.00 0.00 4.51
431 432 9.698309 CTATATCTACACTATCACCCACAAAAG 57.302 37.037 0.00 0.00 0.00 2.27
437 438 7.360113 ACACTATCACCCACAAAAGAAAAAT 57.640 32.000 0.00 0.00 0.00 1.82
438 439 8.472007 ACACTATCACCCACAAAAGAAAAATA 57.528 30.769 0.00 0.00 0.00 1.40
439 440 8.919145 ACACTATCACCCACAAAAGAAAAATAA 58.081 29.630 0.00 0.00 0.00 1.40
440 441 9.757227 CACTATCACCCACAAAAGAAAAATAAA 57.243 29.630 0.00 0.00 0.00 1.40
441 442 9.758651 ACTATCACCCACAAAAGAAAAATAAAC 57.241 29.630 0.00 0.00 0.00 2.01
442 443 9.981114 CTATCACCCACAAAAGAAAAATAAACT 57.019 29.630 0.00 0.00 0.00 2.66
535 539 6.993079 ACTTATCTTATCATGGATGCGTACA 58.007 36.000 0.00 0.00 0.00 2.90
553 557 1.761784 ACAAAAGCAAGATGGGCACAA 59.238 42.857 0.00 0.00 0.00 3.33
609 613 4.746535 TTTTTCTTTTGAGTGGTTCCCC 57.253 40.909 0.00 0.00 0.00 4.81
610 614 1.975660 TTCTTTTGAGTGGTTCCCCG 58.024 50.000 0.00 0.00 0.00 5.73
611 615 0.536460 TCTTTTGAGTGGTTCCCCGC 60.536 55.000 0.00 0.00 41.87 6.13
612 616 0.821711 CTTTTGAGTGGTTCCCCGCA 60.822 55.000 0.00 0.00 44.14 5.69
614 618 0.178975 TTTGAGTGGTTCCCCGCAAT 60.179 50.000 0.00 0.00 44.14 3.56
617 621 1.074084 TGAGTGGTTCCCCGCAATAAA 59.926 47.619 0.00 0.00 44.14 1.40
618 622 2.291282 TGAGTGGTTCCCCGCAATAAAT 60.291 45.455 0.00 0.00 44.14 1.40
619 623 2.099098 GAGTGGTTCCCCGCAATAAATG 59.901 50.000 0.00 0.00 44.14 2.32
620 624 1.136110 GTGGTTCCCCGCAATAAATGG 59.864 52.381 0.00 0.00 41.16 3.16
622 626 1.828595 GGTTCCCCGCAATAAATGGTT 59.171 47.619 0.00 0.00 0.00 3.67
624 628 3.447944 GGTTCCCCGCAATAAATGGTTTA 59.552 43.478 0.00 0.00 0.00 2.01
627 631 6.183360 GGTTCCCCGCAATAAATGGTTTATTA 60.183 38.462 7.21 0.00 42.32 0.98
628 632 6.642707 TCCCCGCAATAAATGGTTTATTAG 57.357 37.500 7.21 5.58 42.32 1.73
687 885 3.629142 AAAGGATGTACACTAGTGCCC 57.371 47.619 22.90 13.46 0.00 5.36
692 890 2.154567 TGTACACTAGTGCCCCTAGG 57.845 55.000 22.90 0.06 46.39 3.02
731 943 0.175760 CCTGCCACTGTAGCGTGTAT 59.824 55.000 0.00 0.00 33.07 2.29
734 946 1.548719 TGCCACTGTAGCGTGTATTCT 59.451 47.619 0.00 0.00 33.07 2.40
741 953 4.703575 ACTGTAGCGTGTATTCTTCCACTA 59.296 41.667 0.00 0.00 0.00 2.74
748 978 4.602995 GTGTATTCTTCCACTAGAGAGCG 58.397 47.826 0.00 0.00 0.00 5.03
798 1036 4.883300 CGAGACGTACGCGAGCCC 62.883 72.222 15.93 0.00 44.01 5.19
812 1050 2.722706 GCGAGCCCGTAAAAGTAAAACG 60.723 50.000 0.00 0.00 38.24 3.60
822 1060 4.629251 AAAAGTAAAACGCAAACGGGTA 57.371 36.364 0.00 0.00 46.04 3.69
954 1265 1.480137 CAAAGCCAAACCACCAACTCA 59.520 47.619 0.00 0.00 0.00 3.41
1235 1571 2.565645 CCGCCTACAGCTAGCCGAT 61.566 63.158 12.13 0.00 40.39 4.18
1243 1579 1.227380 AGCTAGCCGATTCCAAGCG 60.227 57.895 12.13 0.00 38.23 4.68
1260 1606 1.214673 AGCGTCTACTCCTACCCATCA 59.785 52.381 0.00 0.00 0.00 3.07
1298 1744 1.079405 TGCGGAGTCGAACAATCCC 60.079 57.895 0.00 0.00 39.00 3.85
1305 1751 2.165030 GAGTCGAACAATCCCCGAGTTA 59.835 50.000 0.00 0.00 36.28 2.24
1413 1918 4.383552 CCATATCTAGCTAATCTGGTGGGC 60.384 50.000 0.00 0.00 0.00 5.36
1414 1919 1.040646 TCTAGCTAATCTGGTGGGCG 58.959 55.000 0.00 0.00 0.00 6.13
1415 1920 0.753262 CTAGCTAATCTGGTGGGCGT 59.247 55.000 0.00 0.00 0.00 5.68
1416 1921 0.464036 TAGCTAATCTGGTGGGCGTG 59.536 55.000 0.00 0.00 0.00 5.34
1417 1922 2.472909 GCTAATCTGGTGGGCGTGC 61.473 63.158 0.00 0.00 0.00 5.34
1418 1923 1.078497 CTAATCTGGTGGGCGTGCA 60.078 57.895 0.00 0.00 0.00 4.57
1419 1924 0.464373 CTAATCTGGTGGGCGTGCAT 60.464 55.000 0.00 0.00 0.00 3.96
1420 1925 0.463654 TAATCTGGTGGGCGTGCATC 60.464 55.000 0.00 0.00 0.00 3.91
1421 1926 2.482796 AATCTGGTGGGCGTGCATCA 62.483 55.000 0.00 0.00 0.00 3.07
1422 1927 3.434319 CTGGTGGGCGTGCATCAC 61.434 66.667 0.00 8.43 0.00 3.06
1527 2041 3.734902 CGCAGGCCAGTAATGGAAATTTC 60.735 47.826 14.70 9.83 0.00 2.17
1529 2043 3.443681 CAGGCCAGTAATGGAAATTTCGT 59.556 43.478 14.70 0.73 0.00 3.85
1682 2262 0.395311 TGACTAGCGTACCCCTCTGG 60.395 60.000 0.00 0.00 41.37 3.86
1726 2309 0.179054 ACTCGTCTCGATCGATCCCA 60.179 55.000 19.78 5.72 36.73 4.37
1748 2332 2.047274 GCTGTCCAACCTGCGCTA 60.047 61.111 9.73 0.00 0.00 4.26
1832 2433 0.676184 ATCTCCGTCGCTGCATGTAT 59.324 50.000 0.00 0.00 0.00 2.29
1902 2596 1.142474 CCGTCCGTTGGTTAACTGTC 58.858 55.000 5.42 0.00 34.60 3.51
1979 3145 2.668212 GCTGCACACTAACCGGCA 60.668 61.111 0.00 0.00 34.66 5.69
1980 3146 2.966309 GCTGCACACTAACCGGCAC 61.966 63.158 0.00 0.00 32.06 5.01
1982 3148 1.568612 CTGCACACTAACCGGCACTG 61.569 60.000 0.00 0.00 32.06 3.66
1985 3151 1.301716 ACACTAACCGGCACTGCAG 60.302 57.895 13.48 13.48 0.00 4.41
1986 3152 1.005037 CACTAACCGGCACTGCAGA 60.005 57.895 23.35 0.00 0.00 4.26
1987 3153 0.602638 CACTAACCGGCACTGCAGAA 60.603 55.000 23.35 0.00 0.00 3.02
2002 3473 1.666888 GCAGAAGCATGGAAAACACGG 60.667 52.381 0.00 0.00 41.58 4.94
2040 3562 1.562783 AGCTAGCGAAGAAGGAAGGT 58.437 50.000 9.55 0.00 0.00 3.50
2041 3563 2.736347 AGCTAGCGAAGAAGGAAGGTA 58.264 47.619 9.55 0.00 0.00 3.08
2100 3622 9.171701 GTGTGTACGCAAGAAATAAAATACAAA 57.828 29.630 11.40 0.00 43.62 2.83
2121 3643 0.171455 AGCTAACTCTCCGTGCTTCG 59.829 55.000 0.00 0.00 39.52 3.79
2137 3659 6.402118 CCGTGCTTCGATTAGAAAATGAGAAA 60.402 38.462 3.69 0.00 42.86 2.52
2178 3710 2.890474 CATCGCGTGGTAGGGCAC 60.890 66.667 5.77 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.743928 GCGCACTCCTCAACCAGG 60.744 66.667 0.30 0.00 45.15 4.45
9 10 2.743928 GGCGCACTCCTCAACCAG 60.744 66.667 10.83 0.00 0.00 4.00
10 11 4.680237 CGGCGCACTCCTCAACCA 62.680 66.667 10.83 0.00 0.00 3.67
12 13 4.373116 TCCGGCGCACTCCTCAAC 62.373 66.667 10.83 0.00 0.00 3.18
13 14 4.373116 GTCCGGCGCACTCCTCAA 62.373 66.667 10.83 0.00 0.00 3.02
15 16 4.803426 CAGTCCGGCGCACTCCTC 62.803 72.222 10.83 0.00 0.00 3.71
17 18 3.291101 TAACAGTCCGGCGCACTCC 62.291 63.158 10.83 0.00 0.00 3.85
18 19 1.805945 CTAACAGTCCGGCGCACTC 60.806 63.158 10.83 0.00 0.00 3.51
19 20 2.261671 CTAACAGTCCGGCGCACT 59.738 61.111 10.83 0.00 0.00 4.40
20 21 2.813908 CCTAACAGTCCGGCGCAC 60.814 66.667 10.83 0.00 0.00 5.34
21 22 3.307906 ACCTAACAGTCCGGCGCA 61.308 61.111 10.83 0.00 0.00 6.09
22 23 2.813908 CACCTAACAGTCCGGCGC 60.814 66.667 0.00 0.00 0.00 6.53
23 24 2.813908 GCACCTAACAGTCCGGCG 60.814 66.667 0.00 0.00 0.00 6.46
24 25 2.436115 GGCACCTAACAGTCCGGC 60.436 66.667 0.00 0.00 0.00 6.13
42 43 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
43 44 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
53 54 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
69 70 8.487028 CAAACCTAAATATCTAAGACCTGAGGT 58.513 37.037 2.41 2.41 39.44 3.85
70 71 7.934120 CCAAACCTAAATATCTAAGACCTGAGG 59.066 40.741 0.00 0.00 0.00 3.86
71 72 7.442666 GCCAAACCTAAATATCTAAGACCTGAG 59.557 40.741 0.00 0.00 0.00 3.35
72 73 7.127339 AGCCAAACCTAAATATCTAAGACCTGA 59.873 37.037 0.00 0.00 0.00 3.86
73 74 7.227512 CAGCCAAACCTAAATATCTAAGACCTG 59.772 40.741 0.00 0.00 0.00 4.00
74 75 7.283329 CAGCCAAACCTAAATATCTAAGACCT 58.717 38.462 0.00 0.00 0.00 3.85
75 76 6.017026 GCAGCCAAACCTAAATATCTAAGACC 60.017 42.308 0.00 0.00 0.00 3.85
76 77 6.542370 TGCAGCCAAACCTAAATATCTAAGAC 59.458 38.462 0.00 0.00 0.00 3.01
77 78 6.658849 TGCAGCCAAACCTAAATATCTAAGA 58.341 36.000 0.00 0.00 0.00 2.10
78 79 6.942532 TGCAGCCAAACCTAAATATCTAAG 57.057 37.500 0.00 0.00 0.00 2.18
79 80 7.341769 ACATTGCAGCCAAACCTAAATATCTAA 59.658 33.333 0.00 0.00 34.05 2.10
80 81 6.833416 ACATTGCAGCCAAACCTAAATATCTA 59.167 34.615 0.00 0.00 34.05 1.98
81 82 5.658190 ACATTGCAGCCAAACCTAAATATCT 59.342 36.000 0.00 0.00 34.05 1.98
82 83 5.906073 ACATTGCAGCCAAACCTAAATATC 58.094 37.500 0.00 0.00 34.05 1.63
83 84 5.658190 AGACATTGCAGCCAAACCTAAATAT 59.342 36.000 0.00 0.00 34.05 1.28
84 85 5.016173 AGACATTGCAGCCAAACCTAAATA 58.984 37.500 0.00 0.00 34.05 1.40
85 86 3.834231 AGACATTGCAGCCAAACCTAAAT 59.166 39.130 0.00 0.00 34.05 1.40
86 87 3.005684 CAGACATTGCAGCCAAACCTAAA 59.994 43.478 0.00 0.00 34.05 1.85
87 88 2.557924 CAGACATTGCAGCCAAACCTAA 59.442 45.455 0.00 0.00 34.05 2.69
88 89 2.161855 CAGACATTGCAGCCAAACCTA 58.838 47.619 0.00 0.00 34.05 3.08
89 90 0.963962 CAGACATTGCAGCCAAACCT 59.036 50.000 0.00 0.00 34.05 3.50
90 91 0.675633 ACAGACATTGCAGCCAAACC 59.324 50.000 0.00 0.00 34.05 3.27
91 92 2.514205 AACAGACATTGCAGCCAAAC 57.486 45.000 0.00 0.00 34.05 2.93
92 93 2.483363 CCAAACAGACATTGCAGCCAAA 60.483 45.455 0.00 0.00 34.05 3.28
93 94 1.068895 CCAAACAGACATTGCAGCCAA 59.931 47.619 0.00 0.00 35.01 4.52
94 95 0.675083 CCAAACAGACATTGCAGCCA 59.325 50.000 0.00 0.00 0.00 4.75
95 96 0.675633 ACCAAACAGACATTGCAGCC 59.324 50.000 0.00 0.00 0.00 4.85
96 97 3.855689 ATACCAAACAGACATTGCAGC 57.144 42.857 0.00 0.00 0.00 5.25
97 98 5.677091 GCCTAATACCAAACAGACATTGCAG 60.677 44.000 0.00 0.00 0.00 4.41
98 99 4.157656 GCCTAATACCAAACAGACATTGCA 59.842 41.667 0.00 0.00 0.00 4.08
99 100 4.440112 GGCCTAATACCAAACAGACATTGC 60.440 45.833 0.00 0.00 0.00 3.56
100 101 4.097892 GGGCCTAATACCAAACAGACATTG 59.902 45.833 0.84 0.00 0.00 2.82
101 102 4.264172 TGGGCCTAATACCAAACAGACATT 60.264 41.667 4.53 0.00 32.89 2.71
102 103 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
103 104 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
104 105 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
105 106 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
106 107 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
107 108 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
108 109 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
109 110 5.071788 CAGATAGTCTGGGCCTAATACCAAA 59.928 44.000 4.53 0.00 40.71 3.28
110 111 4.593206 CAGATAGTCTGGGCCTAATACCAA 59.407 45.833 4.53 0.00 40.71 3.67
111 112 4.160329 CAGATAGTCTGGGCCTAATACCA 58.840 47.826 4.53 0.00 40.71 3.25
112 113 3.055747 GCAGATAGTCTGGGCCTAATACC 60.056 52.174 4.53 0.00 44.43 2.73
113 114 4.195225 GCAGATAGTCTGGGCCTAATAC 57.805 50.000 4.53 0.00 44.43 1.89
122 123 1.690219 AAGGGGCGCAGATAGTCTGG 61.690 60.000 10.83 1.19 44.43 3.86
123 124 0.249657 GAAGGGGCGCAGATAGTCTG 60.250 60.000 10.83 2.65 46.90 3.51
124 125 0.687757 TGAAGGGGCGCAGATAGTCT 60.688 55.000 10.83 0.00 0.00 3.24
125 126 0.394565 ATGAAGGGGCGCAGATAGTC 59.605 55.000 10.83 0.00 0.00 2.59
126 127 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.000 10.83 0.00 0.00 2.12
127 128 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
128 129 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
129 130 0.184451 ATTGATGAAGGGGCGCAGAT 59.816 50.000 10.83 0.00 0.00 2.90
130 131 0.034186 AATTGATGAAGGGGCGCAGA 60.034 50.000 10.83 0.00 0.00 4.26
131 132 0.101759 CAATTGATGAAGGGGCGCAG 59.898 55.000 10.83 0.00 0.00 5.18
132 133 1.321805 CCAATTGATGAAGGGGCGCA 61.322 55.000 10.83 0.00 0.00 6.09
133 134 1.037030 TCCAATTGATGAAGGGGCGC 61.037 55.000 7.12 0.00 0.00 6.53
134 135 1.696063 ATCCAATTGATGAAGGGGCG 58.304 50.000 7.12 0.00 30.54 6.13
135 136 3.160269 CCTATCCAATTGATGAAGGGGC 58.840 50.000 7.12 0.00 34.76 5.80
136 137 4.459852 ACCTATCCAATTGATGAAGGGG 57.540 45.455 7.12 3.78 34.76 4.79
137 138 7.712639 CGATATACCTATCCAATTGATGAAGGG 59.287 40.741 7.12 6.01 34.76 3.95
138 139 8.478066 TCGATATACCTATCCAATTGATGAAGG 58.522 37.037 7.12 10.29 34.76 3.46
139 140 9.307121 GTCGATATACCTATCCAATTGATGAAG 57.693 37.037 7.12 0.00 34.76 3.02
140 141 8.811994 TGTCGATATACCTATCCAATTGATGAA 58.188 33.333 7.12 0.00 34.76 2.57
141 142 8.361169 TGTCGATATACCTATCCAATTGATGA 57.639 34.615 7.12 0.00 34.76 2.92
142 143 8.253810 ACTGTCGATATACCTATCCAATTGATG 58.746 37.037 7.12 0.00 34.76 3.07
143 144 8.367660 ACTGTCGATATACCTATCCAATTGAT 57.632 34.615 7.12 1.44 37.49 2.57
144 145 7.776618 ACTGTCGATATACCTATCCAATTGA 57.223 36.000 7.12 0.00 31.67 2.57
145 146 7.872993 ACAACTGTCGATATACCTATCCAATTG 59.127 37.037 0.00 0.00 31.67 2.32
146 147 7.963532 ACAACTGTCGATATACCTATCCAATT 58.036 34.615 0.00 0.00 31.67 2.32
147 148 7.540474 ACAACTGTCGATATACCTATCCAAT 57.460 36.000 0.00 0.00 31.67 3.16
148 149 6.971726 ACAACTGTCGATATACCTATCCAA 57.028 37.500 0.00 0.00 31.67 3.53
149 150 6.737622 GCAACAACTGTCGATATACCTATCCA 60.738 42.308 0.00 0.00 31.67 3.41
150 151 5.634020 GCAACAACTGTCGATATACCTATCC 59.366 44.000 0.00 0.00 31.67 2.59
151 152 6.448006 AGCAACAACTGTCGATATACCTATC 58.552 40.000 0.00 0.00 0.00 2.08
152 153 6.406692 AGCAACAACTGTCGATATACCTAT 57.593 37.500 0.00 0.00 0.00 2.57
153 154 5.847111 AGCAACAACTGTCGATATACCTA 57.153 39.130 0.00 0.00 0.00 3.08
154 155 4.737855 AGCAACAACTGTCGATATACCT 57.262 40.909 0.00 0.00 0.00 3.08
155 156 6.198591 GTCTAAGCAACAACTGTCGATATACC 59.801 42.308 0.00 0.00 0.00 2.73
156 157 6.075519 CGTCTAAGCAACAACTGTCGATATAC 60.076 42.308 0.00 0.00 0.00 1.47
157 158 5.969435 CGTCTAAGCAACAACTGTCGATATA 59.031 40.000 0.00 0.00 0.00 0.86
158 159 4.798907 CGTCTAAGCAACAACTGTCGATAT 59.201 41.667 0.00 0.00 0.00 1.63
159 160 4.163552 CGTCTAAGCAACAACTGTCGATA 58.836 43.478 0.00 0.00 0.00 2.92
160 161 2.987149 CGTCTAAGCAACAACTGTCGAT 59.013 45.455 0.00 0.00 0.00 3.59
161 162 2.390938 CGTCTAAGCAACAACTGTCGA 58.609 47.619 0.00 0.00 0.00 4.20
162 163 1.455786 CCGTCTAAGCAACAACTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
163 164 2.221055 CACCGTCTAAGCAACAACTGTC 59.779 50.000 0.00 0.00 0.00 3.51
164 165 2.210116 CACCGTCTAAGCAACAACTGT 58.790 47.619 0.00 0.00 0.00 3.55
165 166 1.531149 CCACCGTCTAAGCAACAACTG 59.469 52.381 0.00 0.00 0.00 3.16
166 167 1.878953 CCACCGTCTAAGCAACAACT 58.121 50.000 0.00 0.00 0.00 3.16
167 168 0.237498 GCCACCGTCTAAGCAACAAC 59.763 55.000 0.00 0.00 0.00 3.32
168 169 0.107831 AGCCACCGTCTAAGCAACAA 59.892 50.000 0.00 0.00 0.00 2.83
169 170 0.107831 AAGCCACCGTCTAAGCAACA 59.892 50.000 0.00 0.00 0.00 3.33
170 171 1.235724 AAAGCCACCGTCTAAGCAAC 58.764 50.000 0.00 0.00 0.00 4.17
171 172 2.843401 TAAAGCCACCGTCTAAGCAA 57.157 45.000 0.00 0.00 0.00 3.91
172 173 3.055385 AGAATAAAGCCACCGTCTAAGCA 60.055 43.478 0.00 0.00 0.00 3.91
173 174 3.532542 AGAATAAAGCCACCGTCTAAGC 58.467 45.455 0.00 0.00 0.00 3.09
174 175 4.201822 GCAAGAATAAAGCCACCGTCTAAG 60.202 45.833 0.00 0.00 0.00 2.18
175 176 3.687698 GCAAGAATAAAGCCACCGTCTAA 59.312 43.478 0.00 0.00 0.00 2.10
176 177 3.055385 AGCAAGAATAAAGCCACCGTCTA 60.055 43.478 0.00 0.00 0.00 2.59
177 178 2.084546 GCAAGAATAAAGCCACCGTCT 58.915 47.619 0.00 0.00 0.00 4.18
178 179 2.084546 AGCAAGAATAAAGCCACCGTC 58.915 47.619 0.00 0.00 0.00 4.79
179 180 1.812571 CAGCAAGAATAAAGCCACCGT 59.187 47.619 0.00 0.00 0.00 4.83
180 181 1.812571 ACAGCAAGAATAAAGCCACCG 59.187 47.619 0.00 0.00 0.00 4.94
181 182 3.005791 ACAACAGCAAGAATAAAGCCACC 59.994 43.478 0.00 0.00 0.00 4.61
182 183 4.243007 ACAACAGCAAGAATAAAGCCAC 57.757 40.909 0.00 0.00 0.00 5.01
183 184 5.105797 CCATACAACAGCAAGAATAAAGCCA 60.106 40.000 0.00 0.00 0.00 4.75
184 185 5.343249 CCATACAACAGCAAGAATAAAGCC 58.657 41.667 0.00 0.00 0.00 4.35
185 186 4.800471 GCCATACAACAGCAAGAATAAAGC 59.200 41.667 0.00 0.00 0.00 3.51
186 187 6.199937 AGCCATACAACAGCAAGAATAAAG 57.800 37.500 0.00 0.00 0.00 1.85
187 188 6.588719 AAGCCATACAACAGCAAGAATAAA 57.411 33.333 0.00 0.00 0.00 1.40
188 189 6.588719 AAAGCCATACAACAGCAAGAATAA 57.411 33.333 0.00 0.00 0.00 1.40
189 190 7.880160 ATAAAGCCATACAACAGCAAGAATA 57.120 32.000 0.00 0.00 0.00 1.75
190 191 6.780457 ATAAAGCCATACAACAGCAAGAAT 57.220 33.333 0.00 0.00 0.00 2.40
191 192 7.148086 CCTTATAAAGCCATACAACAGCAAGAA 60.148 37.037 0.00 0.00 0.00 2.52
192 193 6.318648 CCTTATAAAGCCATACAACAGCAAGA 59.681 38.462 0.00 0.00 0.00 3.02
193 194 6.095440 ACCTTATAAAGCCATACAACAGCAAG 59.905 38.462 0.00 0.00 0.00 4.01
194 195 5.949354 ACCTTATAAAGCCATACAACAGCAA 59.051 36.000 0.00 0.00 0.00 3.91
195 196 5.505780 ACCTTATAAAGCCATACAACAGCA 58.494 37.500 0.00 0.00 0.00 4.41
196 197 5.823045 AGACCTTATAAAGCCATACAACAGC 59.177 40.000 0.00 0.00 0.00 4.40
197 198 7.336931 ACAAGACCTTATAAAGCCATACAACAG 59.663 37.037 0.00 0.00 0.00 3.16
198 199 7.120579 CACAAGACCTTATAAAGCCATACAACA 59.879 37.037 0.00 0.00 0.00 3.33
199 200 7.335924 TCACAAGACCTTATAAAGCCATACAAC 59.664 37.037 0.00 0.00 0.00 3.32
200 201 7.398829 TCACAAGACCTTATAAAGCCATACAA 58.601 34.615 0.00 0.00 0.00 2.41
201 202 6.953101 TCACAAGACCTTATAAAGCCATACA 58.047 36.000 0.00 0.00 0.00 2.29
202 203 7.272978 TCTCACAAGACCTTATAAAGCCATAC 58.727 38.462 0.00 0.00 0.00 2.39
203 204 7.432148 TCTCACAAGACCTTATAAAGCCATA 57.568 36.000 0.00 0.00 0.00 2.74
204 205 6.313519 TCTCACAAGACCTTATAAAGCCAT 57.686 37.500 0.00 0.00 0.00 4.40
205 206 5.755409 TCTCACAAGACCTTATAAAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
206 207 8.732746 TTATTCTCACAAGACCTTATAAAGCC 57.267 34.615 0.00 0.00 0.00 4.35
221 222 9.661563 ACGGACACTTTATTAATTATTCTCACA 57.338 29.630 0.00 0.00 0.00 3.58
230 231 7.647715 GCAATGCATACGGACACTTTATTAATT 59.352 33.333 0.00 0.00 0.00 1.40
231 232 7.138736 GCAATGCATACGGACACTTTATTAAT 58.861 34.615 0.00 0.00 0.00 1.40
232 233 6.459024 GGCAATGCATACGGACACTTTATTAA 60.459 38.462 7.79 0.00 0.00 1.40
233 234 5.008217 GGCAATGCATACGGACACTTTATTA 59.992 40.000 7.79 0.00 0.00 0.98
234 235 4.202010 GGCAATGCATACGGACACTTTATT 60.202 41.667 7.79 0.00 0.00 1.40
235 236 3.315191 GGCAATGCATACGGACACTTTAT 59.685 43.478 7.79 0.00 0.00 1.40
236 237 2.680841 GGCAATGCATACGGACACTTTA 59.319 45.455 7.79 0.00 0.00 1.85
237 238 1.472480 GGCAATGCATACGGACACTTT 59.528 47.619 7.79 0.00 0.00 2.66
238 239 1.094785 GGCAATGCATACGGACACTT 58.905 50.000 7.79 0.00 0.00 3.16
239 240 0.748005 GGGCAATGCATACGGACACT 60.748 55.000 7.79 0.00 0.00 3.55
240 241 1.029408 TGGGCAATGCATACGGACAC 61.029 55.000 7.79 0.00 0.00 3.67
241 242 0.747644 CTGGGCAATGCATACGGACA 60.748 55.000 7.79 0.00 0.00 4.02
242 243 0.463654 TCTGGGCAATGCATACGGAC 60.464 55.000 7.79 0.00 0.00 4.79
243 244 0.473755 ATCTGGGCAATGCATACGGA 59.526 50.000 7.79 7.65 0.00 4.69
244 245 0.594602 CATCTGGGCAATGCATACGG 59.405 55.000 7.79 1.80 0.00 4.02
245 246 0.039798 GCATCTGGGCAATGCATACG 60.040 55.000 7.79 0.00 46.93 3.06
246 247 3.879912 GCATCTGGGCAATGCATAC 57.120 52.632 7.79 0.00 46.93 2.39
251 252 1.735376 GCCTCTGCATCTGGGCAATG 61.735 60.000 12.40 0.00 44.40 2.82
252 253 1.455217 GCCTCTGCATCTGGGCAAT 60.455 57.895 12.40 0.00 44.40 3.56
253 254 2.044650 GCCTCTGCATCTGGGCAA 60.045 61.111 12.40 0.00 44.40 4.52
254 255 3.013327 AGCCTCTGCATCTGGGCA 61.013 61.111 17.35 0.00 46.23 5.36
255 256 2.516460 CAGCCTCTGCATCTGGGC 60.516 66.667 10.17 10.17 44.38 5.36
256 257 2.192443 CCAGCCTCTGCATCTGGG 59.808 66.667 13.52 4.02 42.70 4.45
257 258 2.192443 CCCAGCCTCTGCATCTGG 59.808 66.667 14.09 14.09 45.24 3.86
258 259 2.192443 CCCCAGCCTCTGCATCTG 59.808 66.667 0.00 0.00 41.13 2.90
259 260 3.095163 CCCCCAGCCTCTGCATCT 61.095 66.667 0.00 0.00 41.13 2.90
260 261 3.412624 GACCCCCAGCCTCTGCATC 62.413 68.421 0.00 0.00 41.13 3.91
261 262 3.415087 GACCCCCAGCCTCTGCAT 61.415 66.667 0.00 0.00 41.13 3.96
262 263 4.980592 TGACCCCCAGCCTCTGCA 62.981 66.667 0.00 0.00 41.13 4.41
263 264 3.412624 GATGACCCCCAGCCTCTGC 62.413 68.421 0.00 0.00 37.95 4.26
264 265 2.914289 GATGACCCCCAGCCTCTG 59.086 66.667 0.00 0.00 0.00 3.35
269 270 0.332972 AAAAGAGGATGACCCCCAGC 59.667 55.000 0.00 0.00 36.73 4.85
270 271 2.621668 GGAAAAAGAGGATGACCCCCAG 60.622 54.545 0.00 0.00 36.73 4.45
271 272 1.357761 GGAAAAAGAGGATGACCCCCA 59.642 52.381 0.00 0.00 36.73 4.96
272 273 1.357761 TGGAAAAAGAGGATGACCCCC 59.642 52.381 0.00 0.00 36.73 5.40
273 274 2.899303 TGGAAAAAGAGGATGACCCC 57.101 50.000 0.00 0.00 36.73 4.95
274 275 5.545063 TTTTTGGAAAAAGAGGATGACCC 57.455 39.130 0.00 0.00 33.29 4.46
295 296 6.715264 AGACGATAGGGTTTCATCAACTTTTT 59.285 34.615 0.00 0.00 43.77 1.94
296 297 6.238648 AGACGATAGGGTTTCATCAACTTTT 58.761 36.000 0.00 0.00 43.77 2.27
297 298 5.805728 AGACGATAGGGTTTCATCAACTTT 58.194 37.500 0.00 0.00 43.77 2.66
298 299 5.422214 AGACGATAGGGTTTCATCAACTT 57.578 39.130 0.00 0.00 43.77 2.66
299 300 6.540438 TTAGACGATAGGGTTTCATCAACT 57.460 37.500 0.00 0.00 43.77 3.16
300 301 7.787725 ATTTAGACGATAGGGTTTCATCAAC 57.212 36.000 0.00 0.00 43.77 3.18
301 302 9.893634 TTAATTTAGACGATAGGGTTTCATCAA 57.106 29.630 0.00 0.00 43.77 2.57
331 332 9.753674 TCCACTATCCTTTCAAGATACAAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
332 333 9.581289 TTCCACTATCCTTTCAAGATACAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
333 334 9.581289 TTTCCACTATCCTTTCAAGATACAAAA 57.419 29.630 0.00 0.00 0.00 2.44
334 335 9.010029 GTTTCCACTATCCTTTCAAGATACAAA 57.990 33.333 0.00 0.00 0.00 2.83
335 336 8.383175 AGTTTCCACTATCCTTTCAAGATACAA 58.617 33.333 0.00 0.00 0.00 2.41
336 337 7.918076 AGTTTCCACTATCCTTTCAAGATACA 58.082 34.615 0.00 0.00 0.00 2.29
337 338 8.794335 AAGTTTCCACTATCCTTTCAAGATAC 57.206 34.615 0.00 0.00 30.68 2.24
338 339 8.602424 TGAAGTTTCCACTATCCTTTCAAGATA 58.398 33.333 0.00 0.00 30.68 1.98
339 340 7.391833 GTGAAGTTTCCACTATCCTTTCAAGAT 59.608 37.037 0.00 0.00 30.68 2.40
340 341 6.710744 GTGAAGTTTCCACTATCCTTTCAAGA 59.289 38.462 0.00 0.00 30.68 3.02
341 342 6.712547 AGTGAAGTTTCCACTATCCTTTCAAG 59.287 38.462 0.00 0.00 42.51 3.02
342 343 6.601332 AGTGAAGTTTCCACTATCCTTTCAA 58.399 36.000 0.00 0.00 42.51 2.69
343 344 6.187727 AGTGAAGTTTCCACTATCCTTTCA 57.812 37.500 0.00 0.00 42.51 2.69
344 345 6.568653 GCAAGTGAAGTTTCCACTATCCTTTC 60.569 42.308 0.00 0.00 43.42 2.62
345 346 5.241728 GCAAGTGAAGTTTCCACTATCCTTT 59.758 40.000 0.00 0.00 43.42 3.11
346 347 4.762251 GCAAGTGAAGTTTCCACTATCCTT 59.238 41.667 0.00 0.00 43.42 3.36
347 348 4.042187 AGCAAGTGAAGTTTCCACTATCCT 59.958 41.667 0.00 0.00 43.42 3.24
348 349 4.154918 CAGCAAGTGAAGTTTCCACTATCC 59.845 45.833 0.00 0.00 43.42 2.59
349 350 4.154918 CCAGCAAGTGAAGTTTCCACTATC 59.845 45.833 0.00 0.00 43.42 2.08
350 351 4.074970 CCAGCAAGTGAAGTTTCCACTAT 58.925 43.478 0.00 0.00 43.42 2.12
351 352 3.476552 CCAGCAAGTGAAGTTTCCACTA 58.523 45.455 0.00 0.00 43.42 2.74
352 353 2.301346 CCAGCAAGTGAAGTTTCCACT 58.699 47.619 0.00 0.00 45.88 4.00
353 354 1.338020 CCCAGCAAGTGAAGTTTCCAC 59.662 52.381 0.00 0.00 34.89 4.02
354 355 1.691196 CCCAGCAAGTGAAGTTTCCA 58.309 50.000 0.00 0.00 0.00 3.53
355 356 0.961753 CCCCAGCAAGTGAAGTTTCC 59.038 55.000 0.00 0.00 0.00 3.13
356 357 0.315251 GCCCCAGCAAGTGAAGTTTC 59.685 55.000 0.00 0.00 39.53 2.78
357 358 2.429927 GCCCCAGCAAGTGAAGTTT 58.570 52.632 0.00 0.00 39.53 2.66
358 359 4.181051 GCCCCAGCAAGTGAAGTT 57.819 55.556 0.00 0.00 39.53 2.66
390 391 8.235905 GTGTAGATATAGTTGTTCTCCCGTATC 58.764 40.741 0.00 0.00 0.00 2.24
392 393 7.285566 AGTGTAGATATAGTTGTTCTCCCGTA 58.714 38.462 0.00 0.00 0.00 4.02
393 394 6.127793 AGTGTAGATATAGTTGTTCTCCCGT 58.872 40.000 0.00 0.00 0.00 5.28
401 402 7.783119 TGTGGGTGATAGTGTAGATATAGTTGT 59.217 37.037 0.00 0.00 0.00 3.32
414 415 9.757227 TTTATTTTTCTTTTGTGGGTGATAGTG 57.243 29.630 0.00 0.00 0.00 2.74
450 451 7.318141 CCTACGGTTGAAGACATCTTAGTTTA 58.682 38.462 0.00 0.00 36.11 2.01
535 539 1.270465 GCTTGTGCCCATCTTGCTTTT 60.270 47.619 0.00 0.00 0.00 2.27
601 605 6.338678 ATAAACCATTTATTGCGGGGAACCA 61.339 40.000 0.00 0.00 41.18 3.67
604 608 5.941555 AATAAACCATTTATTGCGGGGAA 57.058 34.783 5.89 0.00 42.54 3.97
606 610 6.039941 TGACTAATAAACCATTTATTGCGGGG 59.960 38.462 14.11 0.00 43.58 5.73
609 613 8.903570 TGTTGACTAATAAACCATTTATTGCG 57.096 30.769 14.11 9.01 43.58 4.85
703 915 0.178953 ACAGTGGCAGGCCTTTGATT 60.179 50.000 0.00 0.00 36.94 2.57
705 917 0.036732 CTACAGTGGCAGGCCTTTGA 59.963 55.000 0.00 0.00 36.94 2.69
711 923 2.501223 TACACGCTACAGTGGCAGGC 62.501 60.000 9.87 0.00 45.80 4.85
717 929 3.612860 GTGGAAGAATACACGCTACAGTG 59.387 47.826 0.00 0.00 46.83 3.66
741 953 4.479993 GCCCATGTGCCGCTCTCT 62.480 66.667 0.00 0.00 0.00 3.10
798 1036 3.418294 CCCGTTTGCGTTTTACTTTTACG 59.582 43.478 0.00 0.00 38.26 3.18
812 1050 3.799755 CGGCAGCTACCCGTTTGC 61.800 66.667 14.92 0.00 40.84 3.68
954 1265 1.007842 GAGAGGAGGAAGAAGAGGGGT 59.992 57.143 0.00 0.00 0.00 4.95
1220 1549 1.040646 TGGAATCGGCTAGCTGTAGG 58.959 55.000 22.76 3.95 0.00 3.18
1235 1571 2.097825 GGTAGGAGTAGACGCTTGGAA 58.902 52.381 0.00 0.00 0.00 3.53
1243 1579 4.223953 TGGATTGATGGGTAGGAGTAGAC 58.776 47.826 0.00 0.00 0.00 2.59
1260 1606 3.384668 CACGCTAGTTGATCGATGGATT 58.615 45.455 0.54 0.00 31.51 3.01
1298 1744 5.219633 CCAACAAAGAACCAAATAACTCGG 58.780 41.667 0.00 0.00 0.00 4.63
1305 1751 1.760029 ACGGCCAACAAAGAACCAAAT 59.240 42.857 2.24 0.00 0.00 2.32
1414 1919 1.874019 AGCGATCGACGTGATGCAC 60.874 57.895 21.57 0.00 44.60 4.57
1415 1920 1.873572 CAGCGATCGACGTGATGCA 60.874 57.895 21.57 0.00 44.60 3.96
1416 1921 2.916423 CAGCGATCGACGTGATGC 59.084 61.111 21.57 0.00 44.60 3.91
1417 1922 1.413008 TTGCAGCGATCGACGTGATG 61.413 55.000 21.57 7.80 44.60 3.07
1418 1923 0.735978 TTTGCAGCGATCGACGTGAT 60.736 50.000 21.57 0.00 44.60 3.06
1419 1924 0.941936 TTTTGCAGCGATCGACGTGA 60.942 50.000 21.57 0.00 44.60 4.35
1420 1925 0.785708 GTTTTGCAGCGATCGACGTG 60.786 55.000 21.57 13.42 44.60 4.49
1421 1926 0.944311 AGTTTTGCAGCGATCGACGT 60.944 50.000 21.57 0.00 44.60 4.34
1422 1927 0.517132 CAGTTTTGCAGCGATCGACG 60.517 55.000 21.57 9.71 45.66 5.12
1423 1928 0.179215 CCAGTTTTGCAGCGATCGAC 60.179 55.000 21.57 10.46 0.00 4.20
1424 1929 1.911293 GCCAGTTTTGCAGCGATCGA 61.911 55.000 21.57 0.00 0.00 3.59
1425 1930 1.512734 GCCAGTTTTGCAGCGATCG 60.513 57.895 11.69 11.69 0.00 3.69
1426 1931 0.730494 GTGCCAGTTTTGCAGCGATC 60.730 55.000 0.00 0.00 39.87 3.69
1427 1932 1.174712 AGTGCCAGTTTTGCAGCGAT 61.175 50.000 0.00 0.00 39.87 4.58
1428 1933 1.785041 GAGTGCCAGTTTTGCAGCGA 61.785 55.000 0.00 0.00 39.87 4.93
1726 2309 1.529244 GCAGGTTGGACAGCCTTGT 60.529 57.895 4.86 0.00 40.24 3.16
1832 2433 1.036707 GTGGCAGCCAAAACCTGTAA 58.963 50.000 18.28 0.00 34.18 2.41
1973 3139 4.254709 TGCTTCTGCAGTGCCGGT 62.255 61.111 23.75 0.00 45.31 5.28
1982 3148 1.666888 CCGTGTTTTCCATGCTTCTGC 60.667 52.381 0.00 0.00 40.20 4.26
1985 3151 2.793278 AACCGTGTTTTCCATGCTTC 57.207 45.000 0.00 0.00 0.00 3.86
1986 3152 4.864704 ATAAACCGTGTTTTCCATGCTT 57.135 36.364 7.22 0.00 0.00 3.91
1987 3153 4.279671 TGAATAAACCGTGTTTTCCATGCT 59.720 37.500 7.22 0.00 0.00 3.79
2002 3473 7.166804 CGCTAGCTACTTCTCTCTTGAATAAAC 59.833 40.741 13.93 0.00 0.00 2.01
2040 3562 3.869065 CAAAGTTGAACGGGCCTCTATA 58.131 45.455 0.84 0.00 0.00 1.31
2041 3563 2.711542 CAAAGTTGAACGGGCCTCTAT 58.288 47.619 0.84 0.00 0.00 1.98
2100 3622 2.689646 GAAGCACGGAGAGTTAGCTTT 58.310 47.619 0.00 0.00 40.69 3.51
2114 3636 8.902040 ATTTTCTCATTTTCTAATCGAAGCAC 57.098 30.769 0.00 0.00 32.21 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.