Multiple sequence alignment - TraesCS2D01G428700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G428700 chr2D 100.000 5226 0 0 1 5226 540814497 540819722 0.000000e+00 9651.0
1 TraesCS2D01G428700 chr2B 93.766 3818 163 34 925 4699 646210086 646213871 0.000000e+00 5662.0
2 TraesCS2D01G428700 chr2B 87.075 735 33 25 110 820 646208996 646209692 0.000000e+00 774.0
3 TraesCS2D01G428700 chr2A 93.543 1967 77 16 2744 4699 684244273 684246200 0.000000e+00 2883.0
4 TraesCS2D01G428700 chr2A 89.627 1369 99 29 1349 2697 684241225 684242570 0.000000e+00 1701.0
5 TraesCS2D01G428700 chr2A 86.506 1082 49 35 327 1330 684240096 684241158 0.000000e+00 1099.0
6 TraesCS2D01G428700 chr2A 85.915 213 17 6 80 281 684239880 684240090 1.140000e-51 215.0
7 TraesCS2D01G428700 chr2A 100.000 28 0 0 2 29 36745365 36745392 9.000000e-03 52.8
8 TraesCS2D01G428700 chr6A 92.381 315 22 1 1638 1952 390566464 390566776 1.030000e-121 448.0
9 TraesCS2D01G428700 chr5A 92.381 315 22 1 1638 1952 193890265 193890577 1.030000e-121 448.0
10 TraesCS2D01G428700 chr5A 92.381 315 22 1 1638 1952 219061202 219060890 1.030000e-121 448.0
11 TraesCS2D01G428700 chr3B 92.381 315 21 2 1639 1952 409336760 409336448 3.710000e-121 446.0
12 TraesCS2D01G428700 chr1B 93.863 277 17 0 1676 1952 129378993 129378717 8.090000e-113 418.0
13 TraesCS2D01G428700 chr4D 93.802 242 10 2 4984 5224 337858791 337858554 4.980000e-95 359.0
14 TraesCS2D01G428700 chr3A 92.308 208 14 1 1639 1846 511043985 511044190 1.420000e-75 294.0
15 TraesCS2D01G428700 chr1A 92.308 208 14 1 1639 1846 278490440 278490235 1.420000e-75 294.0
16 TraesCS2D01G428700 chr1A 92.466 146 10 1 4793 4937 19431456 19431311 1.910000e-49 207.0
17 TraesCS2D01G428700 chr1A 92.466 146 10 1 4793 4937 19434384 19434239 1.910000e-49 207.0
18 TraesCS2D01G428700 chr1A 91.333 150 12 1 4793 4941 19378794 19378645 2.470000e-48 204.0
19 TraesCS2D01G428700 chr1A 91.333 150 12 1 4793 4941 19485189 19485040 2.470000e-48 204.0
20 TraesCS2D01G428700 chr1A 90.667 150 13 1 4793 4941 19461051 19460902 1.150000e-46 198.0
21 TraesCS2D01G428700 chr1A 79.231 130 25 2 4703 4832 435405999 435406126 7.210000e-14 89.8
22 TraesCS2D01G428700 chrUn 92.466 146 10 1 4793 4937 252251344 252251489 1.910000e-49 207.0
23 TraesCS2D01G428700 chrUn 92.466 146 10 1 4793 4937 362469579 362469434 1.910000e-49 207.0
24 TraesCS2D01G428700 chr7B 91.333 150 12 1 4793 4941 740947457 740947606 2.470000e-48 204.0
25 TraesCS2D01G428700 chr7B 97.059 34 1 0 1 34 424646878 424646845 2.030000e-04 58.4
26 TraesCS2D01G428700 chr6D 91.333 150 12 1 4793 4941 315644094 315643945 2.470000e-48 204.0
27 TraesCS2D01G428700 chr4A 92.481 133 10 0 1820 1952 666695381 666695249 1.920000e-44 191.0
28 TraesCS2D01G428700 chr1D 93.137 102 7 0 5117 5218 94416702 94416803 3.260000e-32 150.0
29 TraesCS2D01G428700 chr1D 100.000 31 0 0 1 31 355316559 355316589 2.030000e-04 58.4
30 TraesCS2D01G428700 chr5D 76.923 130 27 2 4702 4831 427533491 427533365 2.610000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G428700 chr2D 540814497 540819722 5225 False 9651.0 9651 100.00000 1 5226 1 chr2D.!!$F1 5225
1 TraesCS2D01G428700 chr2B 646208996 646213871 4875 False 3218.0 5662 90.42050 110 4699 2 chr2B.!!$F1 4589
2 TraesCS2D01G428700 chr2A 684239880 684246200 6320 False 1474.5 2883 88.89775 80 4699 4 chr2A.!!$F2 4619
3 TraesCS2D01G428700 chr1A 19431311 19434384 3073 True 207.0 207 92.46600 4793 4937 2 chr1A.!!$R5 144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 339 0.028747 ACCCTCCATCCATCCATCCA 60.029 55.0 0.00 0.00 0.00 3.41 F
1331 1720 0.320334 TTCTTCGAGGTGCGCATCAA 60.320 50.0 24.93 7.64 40.61 2.57 F
2326 2785 0.030101 GCTGCGTACCTTTGCACAAA 59.970 50.0 0.00 0.00 35.90 2.83 F
3411 5528 0.259938 GCCAGGAATGGAAGGTGGAT 59.740 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2165 2617 0.598065 GAGCATTCGCCAACAACCTT 59.402 50.0 0.00 0.0 39.83 3.50 R
2947 5064 0.767375 ATGCTGTGAGACAACTGGGT 59.233 50.0 0.00 0.0 0.00 4.51 R
3870 6033 0.030773 GAGAGAGACACACACACGCA 59.969 55.0 0.00 0.0 0.00 5.24 R
5172 7472 0.106708 TCGCTGCAGAAACCAAGAGT 59.893 50.0 20.43 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.420800 GCAGATGGCTATATTATTAACCATGC 58.579 38.462 0.00 0.00 38.00 4.06
26 27 7.284034 GCAGATGGCTATATTATTAACCATGCT 59.716 37.037 0.00 0.00 38.00 3.79
27 28 8.834465 CAGATGGCTATATTATTAACCATGCTC 58.166 37.037 0.00 0.00 38.00 4.26
28 29 8.776119 AGATGGCTATATTATTAACCATGCTCT 58.224 33.333 0.00 0.00 38.00 4.09
29 30 9.401058 GATGGCTATATTATTAACCATGCTCTT 57.599 33.333 0.00 0.00 38.00 2.85
41 42 6.966534 AACCATGCTCTTATTTAATCTGGG 57.033 37.500 0.00 0.00 0.00 4.45
42 43 6.266131 ACCATGCTCTTATTTAATCTGGGA 57.734 37.500 0.00 0.00 0.00 4.37
43 44 6.302269 ACCATGCTCTTATTTAATCTGGGAG 58.698 40.000 0.00 0.00 0.00 4.30
44 45 5.709164 CCATGCTCTTATTTAATCTGGGAGG 59.291 44.000 0.00 0.00 0.00 4.30
45 46 5.310409 TGCTCTTATTTAATCTGGGAGGG 57.690 43.478 0.00 0.00 0.00 4.30
46 47 4.975147 TGCTCTTATTTAATCTGGGAGGGA 59.025 41.667 0.00 0.00 0.00 4.20
47 48 5.072329 TGCTCTTATTTAATCTGGGAGGGAG 59.928 44.000 0.00 0.00 0.00 4.30
48 49 5.308237 GCTCTTATTTAATCTGGGAGGGAGA 59.692 44.000 0.00 0.00 0.00 3.71
49 50 6.183361 GCTCTTATTTAATCTGGGAGGGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
50 51 7.638192 GCTCTTATTTAATCTGGGAGGGAGAAA 60.638 40.741 0.00 0.00 0.00 2.52
51 52 8.350180 TCTTATTTAATCTGGGAGGGAGAAAT 57.650 34.615 0.00 0.00 0.00 2.17
52 53 9.460413 TCTTATTTAATCTGGGAGGGAGAAATA 57.540 33.333 0.00 0.00 0.00 1.40
53 54 9.732130 CTTATTTAATCTGGGAGGGAGAAATAG 57.268 37.037 0.00 0.00 0.00 1.73
54 55 7.713704 ATTTAATCTGGGAGGGAGAAATAGT 57.286 36.000 0.00 0.00 0.00 2.12
55 56 7.525158 TTTAATCTGGGAGGGAGAAATAGTT 57.475 36.000 0.00 0.00 0.00 2.24
56 57 5.379706 AATCTGGGAGGGAGAAATAGTTG 57.620 43.478 0.00 0.00 0.00 3.16
57 58 2.505819 TCTGGGAGGGAGAAATAGTTGC 59.494 50.000 0.00 0.00 0.00 4.17
58 59 2.239654 CTGGGAGGGAGAAATAGTTGCA 59.760 50.000 0.00 0.00 0.00 4.08
59 60 2.852449 TGGGAGGGAGAAATAGTTGCAT 59.148 45.455 0.00 0.00 0.00 3.96
60 61 3.269381 TGGGAGGGAGAAATAGTTGCATT 59.731 43.478 0.00 0.00 0.00 3.56
61 62 4.264352 TGGGAGGGAGAAATAGTTGCATTT 60.264 41.667 0.00 0.00 0.00 2.32
62 63 5.044476 TGGGAGGGAGAAATAGTTGCATTTA 60.044 40.000 0.00 0.00 0.00 1.40
63 64 6.071320 GGGAGGGAGAAATAGTTGCATTTAT 58.929 40.000 0.00 0.00 0.00 1.40
64 65 7.147213 TGGGAGGGAGAAATAGTTGCATTTATA 60.147 37.037 0.00 0.00 0.00 0.98
65 66 7.175119 GGGAGGGAGAAATAGTTGCATTTATAC 59.825 40.741 0.00 0.00 0.00 1.47
66 67 7.719633 GGAGGGAGAAATAGTTGCATTTATACA 59.280 37.037 0.00 0.00 0.00 2.29
67 68 9.289782 GAGGGAGAAATAGTTGCATTTATACAT 57.710 33.333 0.00 0.00 0.00 2.29
74 75 9.965824 AAATAGTTGCATTTATACATAAGTGGC 57.034 29.630 6.61 0.00 32.56 5.01
75 76 6.060028 AGTTGCATTTATACATAAGTGGCG 57.940 37.500 6.61 0.00 32.56 5.69
76 77 5.820423 AGTTGCATTTATACATAAGTGGCGA 59.180 36.000 6.61 0.00 32.56 5.54
77 78 6.486657 AGTTGCATTTATACATAAGTGGCGAT 59.513 34.615 6.61 0.00 32.56 4.58
78 79 6.239908 TGCATTTATACATAAGTGGCGATG 57.760 37.500 6.61 0.00 32.56 3.84
94 95 3.938963 GGCGATGAAGTCTTCCACAATAA 59.061 43.478 10.12 0.00 0.00 1.40
99 100 8.988934 GCGATGAAGTCTTCCACAATAAATATA 58.011 33.333 10.12 0.00 0.00 0.86
141 153 4.563976 GCTACATGAAACATGCACAATTCC 59.436 41.667 0.00 0.00 0.00 3.01
185 202 3.117436 CCAGGATCCCCGGGTTATAAAAA 60.117 47.826 21.85 0.00 42.11 1.94
198 215 4.565166 GGTTATAAAAAGGAAACGCATGGC 59.435 41.667 0.00 0.00 0.00 4.40
199 216 3.951775 ATAAAAAGGAAACGCATGGCA 57.048 38.095 0.00 0.00 0.00 4.92
236 253 2.464865 GATCTGAAACCGTCCGATCAG 58.535 52.381 0.00 9.38 43.15 2.90
239 256 1.218316 GAAACCGTCCGATCAGGCT 59.782 57.895 0.00 0.00 40.77 4.58
317 334 2.386100 TGCCACCCTCCATCCATCC 61.386 63.158 0.00 0.00 0.00 3.51
318 335 2.386100 GCCACCCTCCATCCATCCA 61.386 63.158 0.00 0.00 0.00 3.41
319 336 1.723128 GCCACCCTCCATCCATCCAT 61.723 60.000 0.00 0.00 0.00 3.41
320 337 0.403271 CCACCCTCCATCCATCCATC 59.597 60.000 0.00 0.00 0.00 3.51
321 338 0.403271 CACCCTCCATCCATCCATCC 59.597 60.000 0.00 0.00 0.00 3.51
322 339 0.028747 ACCCTCCATCCATCCATCCA 60.029 55.000 0.00 0.00 0.00 3.41
323 340 1.379776 CCCTCCATCCATCCATCCAT 58.620 55.000 0.00 0.00 0.00 3.41
324 341 1.284198 CCCTCCATCCATCCATCCATC 59.716 57.143 0.00 0.00 0.00 3.51
325 342 1.065636 CCTCCATCCATCCATCCATCG 60.066 57.143 0.00 0.00 0.00 3.84
421 462 4.389077 CCCGCAGTTTTACTAGTCTTTGAG 59.611 45.833 0.00 0.00 0.00 3.02
422 463 5.227908 CCGCAGTTTTACTAGTCTTTGAGA 58.772 41.667 0.00 0.00 0.00 3.27
423 464 5.869888 CCGCAGTTTTACTAGTCTTTGAGAT 59.130 40.000 0.00 0.00 0.00 2.75
424 465 6.183360 CCGCAGTTTTACTAGTCTTTGAGATG 60.183 42.308 0.00 0.00 0.00 2.90
425 466 6.586463 CGCAGTTTTACTAGTCTTTGAGATGA 59.414 38.462 0.00 0.00 0.00 2.92
426 467 7.201393 CGCAGTTTTACTAGTCTTTGAGATGAG 60.201 40.741 0.00 0.00 0.00 2.90
427 468 7.815068 GCAGTTTTACTAGTCTTTGAGATGAGA 59.185 37.037 0.00 0.00 0.00 3.27
495 541 2.431782 CCCATCCCATGTTCCATGTTTC 59.568 50.000 3.75 0.00 0.00 2.78
496 542 3.098377 CCATCCCATGTTCCATGTTTCA 58.902 45.455 3.75 0.00 0.00 2.69
498 544 2.806434 TCCCATGTTCCATGTTTCAGG 58.194 47.619 3.75 0.00 0.00 3.86
552 614 4.351938 CAACAGACCGGACGCGGA 62.352 66.667 9.46 0.00 0.00 5.54
622 695 4.093743 TGTACTAGCCTGTGATTCTTCCA 58.906 43.478 0.00 0.00 0.00 3.53
729 813 2.040544 CCAACCGAAATCCGCTGCT 61.041 57.895 0.00 0.00 36.84 4.24
820 920 2.442413 CAGATCGTCTCTCCCCCTATC 58.558 57.143 0.00 0.00 29.16 2.08
821 921 1.356398 AGATCGTCTCTCCCCCTATCC 59.644 57.143 0.00 0.00 0.00 2.59
838 938 3.764466 CCTCCGGCAGTTCGAGCT 61.764 66.667 0.00 0.00 0.00 4.09
857 958 1.069358 CTATCAAGAACCGAGCCCTCC 59.931 57.143 0.00 0.00 0.00 4.30
860 961 3.564347 AAGAACCGAGCCCTCCCCT 62.564 63.158 0.00 0.00 0.00 4.79
899 1000 4.814294 GATTCGTCTGGCGCGGGT 62.814 66.667 8.83 0.00 41.07 5.28
900 1001 4.388499 ATTCGTCTGGCGCGGGTT 62.388 61.111 8.83 0.00 41.07 4.11
1146 1535 4.115199 GCCTCCCCCGTCAGCAAT 62.115 66.667 0.00 0.00 0.00 3.56
1197 1586 3.519930 GACGACGAGAGGGCCTCC 61.520 72.222 29.62 19.27 38.71 4.30
1218 1607 1.017177 GCGTTGTCTTCGGCCACATA 61.017 55.000 2.24 0.00 0.00 2.29
1257 1646 1.636769 GGTCCAGGGGGTCCAAGATC 61.637 65.000 0.00 0.00 41.51 2.75
1326 1715 1.061276 GAGAAATTCTTCGAGGTGCGC 59.939 52.381 0.00 0.00 40.61 6.09
1331 1720 0.320334 TTCTTCGAGGTGCGCATCAA 60.320 50.000 24.93 7.64 40.61 2.57
1344 1781 6.881065 AGGTGCGCATCAATCAATTATACTAT 59.119 34.615 24.93 0.00 0.00 2.12
1346 1783 8.023128 GGTGCGCATCAATCAATTATACTATTT 58.977 33.333 17.62 0.00 0.00 1.40
1347 1784 8.843733 GTGCGCATCAATCAATTATACTATTTG 58.156 33.333 15.91 0.00 0.00 2.32
1400 1837 9.118236 CAGAGCAAGCTTTTAATTAAACTACAC 57.882 33.333 10.18 0.13 0.00 2.90
1413 1852 7.865706 ATTAAACTACACCCATGCTAGAAAG 57.134 36.000 0.00 0.00 0.00 2.62
1441 1880 9.710900 TGTGAATTACTGCATATAGTAAGGATG 57.289 33.333 4.78 0.00 43.95 3.51
1451 1890 8.531982 TGCATATAGTAAGGATGAAGGACATAC 58.468 37.037 0.00 0.00 39.56 2.39
1464 1903 5.934043 TGAAGGACATACAGTTTGACATCTG 59.066 40.000 0.00 6.61 37.65 2.90
1472 1911 1.610522 AGTTTGACATCTGTGGCTTGC 59.389 47.619 0.00 0.00 33.19 4.01
1520 1967 0.883833 CTTGGTCTTGGTGCACATCC 59.116 55.000 20.43 12.72 0.00 3.51
1525 1972 1.888512 GTCTTGGTGCACATCCATTGT 59.111 47.619 20.43 0.00 39.91 2.71
1532 1979 3.306919 GGTGCACATCCATTGTTCCATTT 60.307 43.478 20.43 0.00 36.00 2.32
1545 1992 4.824289 TGTTCCATTTTACCTCTCCGTAC 58.176 43.478 0.00 0.00 0.00 3.67
1632 2079 1.053835 TGGACCTTCTGTCACAGCCA 61.054 55.000 0.00 0.00 46.38 4.75
1634 2081 0.603975 GACCTTCTGTCACAGCCACC 60.604 60.000 0.00 0.00 43.85 4.61
1650 2097 6.041637 CACAGCCACCTACTGTTATAGGATAA 59.958 42.308 5.84 0.00 46.01 1.75
1720 2169 5.415415 AGTATCGATCTTTTCAGCAATGC 57.585 39.130 0.00 0.00 0.00 3.56
2062 2513 8.178313 TCGGTATCGATATTTGCCATATAGAT 57.822 34.615 8.66 11.13 40.88 1.98
2069 2521 8.409371 TCGATATTTGCCATATAGATCTGTCTC 58.591 37.037 5.18 0.00 35.87 3.36
2096 2548 6.406692 ACAGTGTTCAGAAGCTAAAGACTA 57.593 37.500 0.00 0.00 0.00 2.59
2106 2558 3.517612 AGCTAAAGACTACCTTGGGTGA 58.482 45.455 0.00 0.00 36.19 4.02
2107 2559 4.104831 AGCTAAAGACTACCTTGGGTGAT 58.895 43.478 0.00 0.00 36.19 3.06
2165 2617 5.682234 TTTCTATGGTTGATGCTGAGAGA 57.318 39.130 0.00 0.00 0.00 3.10
2326 2785 0.030101 GCTGCGTACCTTTGCACAAA 59.970 50.000 0.00 0.00 35.90 2.83
2752 4869 7.012989 CCCGTCCCCTATTTTACTCTATTTTTG 59.987 40.741 0.00 0.00 0.00 2.44
2924 5041 5.185828 CCCTTTTACTCTTTCCTTTCCCATG 59.814 44.000 0.00 0.00 0.00 3.66
2947 5064 8.624776 CATGTACAGTTGTCAGACATATCTCTA 58.375 37.037 3.45 0.00 30.42 2.43
3258 5375 9.582431 TTCTACAGTTGCTTTACACTGTATATC 57.418 33.333 11.54 0.00 39.72 1.63
3333 5450 7.701539 TTATCATTGGTTTTAGCACACATCT 57.298 32.000 0.00 0.00 0.00 2.90
3411 5528 0.259938 GCCAGGAATGGAAGGTGGAT 59.740 55.000 0.00 0.00 0.00 3.41
3608 5725 2.661675 CGTAACTCATGTTGACTGGTCG 59.338 50.000 0.00 0.00 37.59 4.79
3747 5865 5.216614 ACTTGTCAGAGGTCCTTTAAGTC 57.783 43.478 0.00 0.00 0.00 3.01
3754 5872 4.467795 CAGAGGTCCTTTAAGTCCATCTCA 59.532 45.833 0.00 0.00 0.00 3.27
3757 5875 6.044404 AGAGGTCCTTTAAGTCCATCTCAAAA 59.956 38.462 0.00 0.00 0.00 2.44
3758 5876 6.794534 AGGTCCTTTAAGTCCATCTCAAAAT 58.205 36.000 6.30 0.00 0.00 1.82
3843 5962 3.243035 CGATAGCAAGGTCTCTGTCTCTG 60.243 52.174 0.00 0.00 0.00 3.35
3855 6018 4.081476 TCTCTGTCTCTGTCTCTCTCTCTG 60.081 50.000 0.00 0.00 0.00 3.35
3856 6019 3.582647 TCTGTCTCTGTCTCTCTCTCTGT 59.417 47.826 0.00 0.00 0.00 3.41
3857 6020 3.673902 TGTCTCTGTCTCTCTCTCTGTG 58.326 50.000 0.00 0.00 0.00 3.66
3858 6021 3.072330 TGTCTCTGTCTCTCTCTCTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
3859 6022 3.436704 GTCTCTGTCTCTCTCTCTGTGTG 59.563 52.174 0.00 0.00 0.00 3.82
3860 6023 3.072330 TCTCTGTCTCTCTCTCTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
3861 6024 3.820467 CTCTGTCTCTCTCTCTGTGTGTT 59.180 47.826 0.00 0.00 0.00 3.32
3862 6025 4.211125 TCTGTCTCTCTCTCTGTGTGTTT 58.789 43.478 0.00 0.00 0.00 2.83
3863 6026 4.037327 TCTGTCTCTCTCTCTGTGTGTTTG 59.963 45.833 0.00 0.00 0.00 2.93
3864 6027 3.701542 TGTCTCTCTCTCTGTGTGTTTGT 59.298 43.478 0.00 0.00 0.00 2.83
3865 6028 4.160439 TGTCTCTCTCTCTGTGTGTTTGTT 59.840 41.667 0.00 0.00 0.00 2.83
3866 6029 5.112686 GTCTCTCTCTCTGTGTGTTTGTTT 58.887 41.667 0.00 0.00 0.00 2.83
3867 6030 5.006165 GTCTCTCTCTCTGTGTGTTTGTTTG 59.994 44.000 0.00 0.00 0.00 2.93
3868 6031 4.832248 TCTCTCTCTGTGTGTTTGTTTGT 58.168 39.130 0.00 0.00 0.00 2.83
3869 6032 4.631377 TCTCTCTCTGTGTGTTTGTTTGTG 59.369 41.667 0.00 0.00 0.00 3.33
3870 6033 4.323417 TCTCTCTGTGTGTTTGTTTGTGT 58.677 39.130 0.00 0.00 0.00 3.72
3871 6034 4.154015 TCTCTCTGTGTGTTTGTTTGTGTG 59.846 41.667 0.00 0.00 0.00 3.82
3872 6035 2.916716 CTCTGTGTGTTTGTTTGTGTGC 59.083 45.455 0.00 0.00 0.00 4.57
3873 6036 1.648191 CTGTGTGTTTGTTTGTGTGCG 59.352 47.619 0.00 0.00 0.00 5.34
3874 6037 1.001268 TGTGTGTTTGTTTGTGTGCGT 60.001 42.857 0.00 0.00 0.00 5.24
3875 6038 1.385075 GTGTGTTTGTTTGTGTGCGTG 59.615 47.619 0.00 0.00 0.00 5.34
3876 6039 1.001268 TGTGTTTGTTTGTGTGCGTGT 60.001 42.857 0.00 0.00 0.00 4.49
3877 6040 1.385075 GTGTTTGTTTGTGTGCGTGTG 59.615 47.619 0.00 0.00 0.00 3.82
3878 6041 1.001268 TGTTTGTTTGTGTGCGTGTGT 60.001 42.857 0.00 0.00 0.00 3.72
3879 6042 1.385075 GTTTGTTTGTGTGCGTGTGTG 59.615 47.619 0.00 0.00 0.00 3.82
3880 6043 0.593618 TTGTTTGTGTGCGTGTGTGT 59.406 45.000 0.00 0.00 0.00 3.72
3881 6044 0.110010 TGTTTGTGTGCGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
3900 6063 3.178267 GTGTCTCTCTCTCAATGCTTCG 58.822 50.000 0.00 0.00 0.00 3.79
3904 6067 1.067565 TCTCTCTCAATGCTTCGCGTT 60.068 47.619 5.77 0.00 38.39 4.84
3922 6085 4.612712 CGCGTTCACATTTACCTGACAAAT 60.613 41.667 0.00 0.00 0.00 2.32
4047 6210 0.676782 AACCATGCTACCTGTTCGCC 60.677 55.000 0.00 0.00 0.00 5.54
4133 6296 0.679002 GTGTGCTGTGCTCATCCCAT 60.679 55.000 0.00 0.00 34.62 4.00
4204 6367 8.328758 TGTACATTTGGAAGGACATTAGATCTT 58.671 33.333 0.00 0.00 0.00 2.40
4230 6393 7.437713 TGACAAGTTGGTGGATATAGAAGAT 57.562 36.000 7.96 0.00 0.00 2.40
4232 6395 9.159254 TGACAAGTTGGTGGATATAGAAGATAT 57.841 33.333 7.96 0.00 0.00 1.63
4235 6398 9.574458 CAAGTTGGTGGATATAGAAGATATACG 57.426 37.037 0.00 0.00 0.00 3.06
4236 6399 8.294954 AGTTGGTGGATATAGAAGATATACGG 57.705 38.462 0.00 0.00 0.00 4.02
4237 6400 8.114102 AGTTGGTGGATATAGAAGATATACGGA 58.886 37.037 0.00 0.00 0.00 4.69
4293 6456 2.709934 CCAATCCCATCTCCATCTCAGT 59.290 50.000 0.00 0.00 0.00 3.41
4429 6592 3.565482 TCGGAAAAGCCATTAGATGATGC 59.435 43.478 0.00 0.00 35.94 3.91
4723 6892 8.794335 AATATACTCTTTCTGTCTGGGAAAAC 57.206 34.615 0.00 0.00 33.17 2.43
4724 6893 4.779993 ACTCTTTCTGTCTGGGAAAACT 57.220 40.909 0.00 0.00 33.17 2.66
4725 6894 5.117406 ACTCTTTCTGTCTGGGAAAACTT 57.883 39.130 0.00 0.00 33.17 2.66
4726 6895 4.884164 ACTCTTTCTGTCTGGGAAAACTTG 59.116 41.667 0.00 0.00 33.17 3.16
4727 6896 4.855340 TCTTTCTGTCTGGGAAAACTTGT 58.145 39.130 0.00 0.00 33.17 3.16
4728 6897 4.881850 TCTTTCTGTCTGGGAAAACTTGTC 59.118 41.667 0.00 0.00 33.17 3.18
4729 6898 3.208747 TCTGTCTGGGAAAACTTGTCC 57.791 47.619 0.00 0.00 0.00 4.02
4735 6904 1.956802 GGAAAACTTGTCCCTGGCG 59.043 57.895 0.00 0.00 0.00 5.69
4736 6905 1.524008 GGAAAACTTGTCCCTGGCGG 61.524 60.000 0.00 0.00 0.00 6.13
4737 6906 0.822121 GAAAACTTGTCCCTGGCGGT 60.822 55.000 0.00 0.00 0.00 5.68
4738 6907 0.475044 AAAACTTGTCCCTGGCGGTA 59.525 50.000 0.00 0.00 0.00 4.02
4739 6908 0.696501 AAACTTGTCCCTGGCGGTAT 59.303 50.000 0.00 0.00 0.00 2.73
4740 6909 0.696501 AACTTGTCCCTGGCGGTATT 59.303 50.000 0.00 0.00 0.00 1.89
4741 6910 0.696501 ACTTGTCCCTGGCGGTATTT 59.303 50.000 0.00 0.00 0.00 1.40
4742 6911 1.074889 ACTTGTCCCTGGCGGTATTTT 59.925 47.619 0.00 0.00 0.00 1.82
4743 6912 2.306512 ACTTGTCCCTGGCGGTATTTTA 59.693 45.455 0.00 0.00 0.00 1.52
4744 6913 2.406596 TGTCCCTGGCGGTATTTTAC 57.593 50.000 0.00 0.00 0.00 2.01
4745 6914 1.065272 TGTCCCTGGCGGTATTTTACC 60.065 52.381 0.00 0.00 45.52 2.85
4770 6939 1.235724 AAAACCTCGCCTTTCCTTCG 58.764 50.000 0.00 0.00 0.00 3.79
4771 6940 0.395312 AAACCTCGCCTTTCCTTCGA 59.605 50.000 0.00 0.00 0.00 3.71
4772 6941 0.320508 AACCTCGCCTTTCCTTCGAC 60.321 55.000 0.00 0.00 0.00 4.20
4773 6942 1.292223 CCTCGCCTTTCCTTCGACA 59.708 57.895 0.00 0.00 0.00 4.35
4774 6943 0.320421 CCTCGCCTTTCCTTCGACAA 60.320 55.000 0.00 0.00 0.00 3.18
4775 6944 1.508632 CTCGCCTTTCCTTCGACAAA 58.491 50.000 0.00 0.00 0.00 2.83
4776 6945 1.194772 CTCGCCTTTCCTTCGACAAAC 59.805 52.381 0.00 0.00 0.00 2.93
4777 6946 0.237498 CGCCTTTCCTTCGACAAACC 59.763 55.000 0.00 0.00 0.00 3.27
4778 6947 1.314730 GCCTTTCCTTCGACAAACCA 58.685 50.000 0.00 0.00 0.00 3.67
4779 6948 1.001706 GCCTTTCCTTCGACAAACCAC 60.002 52.381 0.00 0.00 0.00 4.16
4780 6949 1.263217 CCTTTCCTTCGACAAACCACG 59.737 52.381 0.00 0.00 0.00 4.94
4781 6950 0.658897 TTTCCTTCGACAAACCACGC 59.341 50.000 0.00 0.00 0.00 5.34
4782 6951 1.492319 TTCCTTCGACAAACCACGCG 61.492 55.000 3.53 3.53 0.00 6.01
4783 6952 2.549282 CTTCGACAAACCACGCGG 59.451 61.111 12.47 0.00 38.77 6.46
4784 6953 3.573489 CTTCGACAAACCACGCGGC 62.573 63.158 12.47 0.00 34.57 6.53
4845 7014 4.824515 CTCCCCCTCGTCTCGCCT 62.825 72.222 0.00 0.00 0.00 5.52
4853 7022 1.091537 CTCGTCTCGCCTCTTCTCTT 58.908 55.000 0.00 0.00 0.00 2.85
4857 7026 1.088306 TCTCGCCTCTTCTCTTCGTC 58.912 55.000 0.00 0.00 0.00 4.20
4858 7027 1.091537 CTCGCCTCTTCTCTTCGTCT 58.908 55.000 0.00 0.00 0.00 4.18
4863 7032 1.403514 CCTCTTCTCTTCGTCTGCACC 60.404 57.143 0.00 0.00 0.00 5.01
4864 7033 0.241213 TCTTCTCTTCGTCTGCACCG 59.759 55.000 0.00 0.00 0.00 4.94
4875 7044 1.817099 CTGCACCGGGAGATCAAGC 60.817 63.158 6.32 0.00 33.71 4.01
4908 7077 0.667993 CTTTTCTGCAAAGCCCGTGA 59.332 50.000 0.00 0.00 35.66 4.35
4946 7199 4.776322 CGCTCATGCCCCCGTGAA 62.776 66.667 0.00 0.00 36.60 3.18
4955 7208 1.750399 CCCCCGTGAATTGCTCCAG 60.750 63.158 0.00 0.00 0.00 3.86
4956 7209 2.409870 CCCCGTGAATTGCTCCAGC 61.410 63.158 0.00 0.00 42.50 4.85
4959 7212 1.503542 CGTGAATTGCTCCAGCCAC 59.496 57.895 0.00 0.00 41.18 5.01
4964 7217 0.901114 AATTGCTCCAGCCACATGCA 60.901 50.000 0.00 0.00 44.83 3.96
4965 7218 1.320344 ATTGCTCCAGCCACATGCAG 61.320 55.000 0.00 0.00 44.83 4.41
4966 7219 2.045634 GCTCCAGCCACATGCAGA 60.046 61.111 0.00 0.00 44.83 4.26
4969 7269 0.035725 CTCCAGCCACATGCAGAGAA 60.036 55.000 0.00 0.00 42.30 2.87
4971 7271 1.310933 CCAGCCACATGCAGAGAACC 61.311 60.000 0.00 0.00 44.83 3.62
4974 7274 2.401766 CCACATGCAGAGAACCGCC 61.402 63.158 0.00 0.00 0.00 6.13
4988 7288 4.821589 CGCCCTCTTCGCTCCACC 62.822 72.222 0.00 0.00 0.00 4.61
4989 7289 4.821589 GCCCTCTTCGCTCCACCG 62.822 72.222 0.00 0.00 0.00 4.94
4990 7290 4.148825 CCCTCTTCGCTCCACCGG 62.149 72.222 0.00 0.00 0.00 5.28
4991 7291 4.821589 CCTCTTCGCTCCACCGGC 62.822 72.222 0.00 0.00 0.00 6.13
4992 7292 3.764466 CTCTTCGCTCCACCGGCT 61.764 66.667 0.00 0.00 0.00 5.52
4993 7293 3.302347 CTCTTCGCTCCACCGGCTT 62.302 63.158 0.00 0.00 0.00 4.35
4994 7294 2.815647 CTTCGCTCCACCGGCTTC 60.816 66.667 0.00 0.00 0.00 3.86
4995 7295 3.302347 CTTCGCTCCACCGGCTTCT 62.302 63.158 0.00 0.00 0.00 2.85
4996 7296 3.296709 TTCGCTCCACCGGCTTCTC 62.297 63.158 0.00 0.00 0.00 2.87
5000 7300 2.915659 TCCACCGGCTTCTCGTGT 60.916 61.111 0.00 0.00 0.00 4.49
5027 7327 4.456253 CGCCGCTTCTGCTGCTTG 62.456 66.667 0.00 0.00 45.29 4.01
5030 7330 1.670406 CCGCTTCTGCTGCTTGTCT 60.670 57.895 0.00 0.00 36.97 3.41
5034 7334 0.320247 CTTCTGCTGCTTGTCTCCGT 60.320 55.000 0.00 0.00 0.00 4.69
5035 7335 0.319900 TTCTGCTGCTTGTCTCCGTC 60.320 55.000 0.00 0.00 0.00 4.79
5036 7336 1.181741 TCTGCTGCTTGTCTCCGTCT 61.182 55.000 0.00 0.00 0.00 4.18
5037 7337 0.735632 CTGCTGCTTGTCTCCGTCTC 60.736 60.000 0.00 0.00 0.00 3.36
5039 7339 1.882989 GCTGCTTGTCTCCGTCTCCT 61.883 60.000 0.00 0.00 0.00 3.69
5040 7340 0.108898 CTGCTTGTCTCCGTCTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
5041 7341 1.446966 GCTTGTCTCCGTCTCCTGC 60.447 63.158 0.00 0.00 0.00 4.85
5042 7342 1.967535 CTTGTCTCCGTCTCCTGCA 59.032 57.895 0.00 0.00 0.00 4.41
5043 7343 0.534412 CTTGTCTCCGTCTCCTGCAT 59.466 55.000 0.00 0.00 0.00 3.96
5046 7346 1.683707 TCTCCGTCTCCTGCATGCT 60.684 57.895 20.33 0.00 0.00 3.79
5048 7348 2.584418 CCGTCTCCTGCATGCTCG 60.584 66.667 20.33 9.85 0.00 5.03
5049 7349 2.491621 CGTCTCCTGCATGCTCGA 59.508 61.111 20.33 12.77 0.00 4.04
5050 7350 1.875813 CGTCTCCTGCATGCTCGAC 60.876 63.158 20.33 16.84 0.00 4.20
5051 7351 1.216444 GTCTCCTGCATGCTCGACA 59.784 57.895 20.33 0.00 0.00 4.35
5052 7352 0.390340 GTCTCCTGCATGCTCGACAA 60.390 55.000 20.33 0.00 0.00 3.18
5053 7353 0.108472 TCTCCTGCATGCTCGACAAG 60.108 55.000 20.33 6.36 0.00 3.16
5056 7356 0.108186 CCTGCATGCTCGACAAGGTA 60.108 55.000 20.33 0.00 0.00 3.08
5057 7357 1.002366 CTGCATGCTCGACAAGGTAC 58.998 55.000 20.33 0.00 0.00 3.34
5058 7358 0.391130 TGCATGCTCGACAAGGTACC 60.391 55.000 20.33 2.73 0.00 3.34
5059 7359 1.421410 GCATGCTCGACAAGGTACCG 61.421 60.000 11.37 0.00 0.00 4.02
5060 7360 1.153628 ATGCTCGACAAGGTACCGC 60.154 57.895 6.18 2.26 0.00 5.68
5061 7361 1.884075 ATGCTCGACAAGGTACCGCA 61.884 55.000 6.18 8.57 0.00 5.69
5062 7362 1.805945 GCTCGACAAGGTACCGCAG 60.806 63.158 6.18 2.89 0.00 5.18
5075 7375 2.487428 CGCAGGTCTCTGTCTCCG 59.513 66.667 0.00 0.00 42.78 4.63
5076 7376 2.183046 GCAGGTCTCTGTCTCCGC 59.817 66.667 0.00 0.00 42.78 5.54
5077 7377 2.888863 CAGGTCTCTGTCTCCGCC 59.111 66.667 0.00 0.00 36.30 6.13
5078 7378 2.752238 AGGTCTCTGTCTCCGCCG 60.752 66.667 0.00 0.00 0.00 6.46
5079 7379 4.500116 GGTCTCTGTCTCCGCCGC 62.500 72.222 0.00 0.00 0.00 6.53
5080 7380 4.500116 GTCTCTGTCTCCGCCGCC 62.500 72.222 0.00 0.00 0.00 6.13
5101 7401 4.385405 GCCGTCTGCTGCTGGTCT 62.385 66.667 6.69 0.00 36.87 3.85
5102 7402 2.125753 CCGTCTGCTGCTGGTCTC 60.126 66.667 6.69 0.00 0.00 3.36
5103 7403 2.644212 CCGTCTGCTGCTGGTCTCT 61.644 63.158 6.69 0.00 0.00 3.10
5104 7404 1.291588 CGTCTGCTGCTGGTCTCTT 59.708 57.895 6.69 0.00 0.00 2.85
5105 7405 0.320247 CGTCTGCTGCTGGTCTCTTT 60.320 55.000 6.69 0.00 0.00 2.52
5106 7406 1.437625 GTCTGCTGCTGGTCTCTTTC 58.562 55.000 6.69 0.00 0.00 2.62
5107 7407 1.001860 GTCTGCTGCTGGTCTCTTTCT 59.998 52.381 6.69 0.00 0.00 2.52
5108 7408 1.696336 TCTGCTGCTGGTCTCTTTCTT 59.304 47.619 6.69 0.00 0.00 2.52
5109 7409 2.075338 CTGCTGCTGGTCTCTTTCTTC 58.925 52.381 0.00 0.00 0.00 2.87
5110 7410 1.417517 TGCTGCTGGTCTCTTTCTTCA 59.582 47.619 0.00 0.00 0.00 3.02
5111 7411 2.039480 TGCTGCTGGTCTCTTTCTTCAT 59.961 45.455 0.00 0.00 0.00 2.57
5112 7412 2.419324 GCTGCTGGTCTCTTTCTTCATG 59.581 50.000 0.00 0.00 0.00 3.07
5113 7413 3.008330 CTGCTGGTCTCTTTCTTCATGG 58.992 50.000 0.00 0.00 0.00 3.66
5114 7414 2.639347 TGCTGGTCTCTTTCTTCATGGA 59.361 45.455 0.00 0.00 0.00 3.41
5115 7415 3.265221 TGCTGGTCTCTTTCTTCATGGAT 59.735 43.478 0.00 0.00 0.00 3.41
5116 7416 4.263639 TGCTGGTCTCTTTCTTCATGGATT 60.264 41.667 0.00 0.00 0.00 3.01
5117 7417 4.704057 GCTGGTCTCTTTCTTCATGGATTT 59.296 41.667 0.00 0.00 0.00 2.17
5118 7418 5.184671 GCTGGTCTCTTTCTTCATGGATTTT 59.815 40.000 0.00 0.00 0.00 1.82
5119 7419 6.624642 GCTGGTCTCTTTCTTCATGGATTTTC 60.625 42.308 0.00 0.00 0.00 2.29
5120 7420 6.546484 TGGTCTCTTTCTTCATGGATTTTCT 58.454 36.000 0.00 0.00 0.00 2.52
5121 7421 7.006509 TGGTCTCTTTCTTCATGGATTTTCTT 58.993 34.615 0.00 0.00 0.00 2.52
5122 7422 7.040201 TGGTCTCTTTCTTCATGGATTTTCTTG 60.040 37.037 0.00 0.00 0.00 3.02
5123 7423 6.805760 GTCTCTTTCTTCATGGATTTTCTTGC 59.194 38.462 0.00 0.00 0.00 4.01
5124 7424 6.718454 TCTCTTTCTTCATGGATTTTCTTGCT 59.282 34.615 0.00 0.00 0.00 3.91
5125 7425 7.232127 TCTCTTTCTTCATGGATTTTCTTGCTT 59.768 33.333 0.00 0.00 0.00 3.91
5126 7426 7.149973 TCTTTCTTCATGGATTTTCTTGCTTG 58.850 34.615 0.00 0.00 0.00 4.01
5127 7427 4.813027 TCTTCATGGATTTTCTTGCTTGC 58.187 39.130 0.00 0.00 0.00 4.01
5128 7428 4.525487 TCTTCATGGATTTTCTTGCTTGCT 59.475 37.500 0.00 0.00 0.00 3.91
5129 7429 4.877378 TCATGGATTTTCTTGCTTGCTT 57.123 36.364 0.00 0.00 0.00 3.91
5130 7430 4.562082 TCATGGATTTTCTTGCTTGCTTG 58.438 39.130 0.00 0.00 0.00 4.01
5131 7431 4.039488 TCATGGATTTTCTTGCTTGCTTGT 59.961 37.500 0.00 0.00 0.00 3.16
5132 7432 4.405116 TGGATTTTCTTGCTTGCTTGTT 57.595 36.364 0.00 0.00 0.00 2.83
5133 7433 4.768583 TGGATTTTCTTGCTTGCTTGTTT 58.231 34.783 0.00 0.00 0.00 2.83
5134 7434 4.571580 TGGATTTTCTTGCTTGCTTGTTTG 59.428 37.500 0.00 0.00 0.00 2.93
5135 7435 4.571984 GGATTTTCTTGCTTGCTTGTTTGT 59.428 37.500 0.00 0.00 0.00 2.83
5136 7436 5.065090 GGATTTTCTTGCTTGCTTGTTTGTT 59.935 36.000 0.00 0.00 0.00 2.83
5137 7437 5.938438 TTTTCTTGCTTGCTTGTTTGTTT 57.062 30.435 0.00 0.00 0.00 2.83
5138 7438 5.529014 TTTCTTGCTTGCTTGTTTGTTTC 57.471 34.783 0.00 0.00 0.00 2.78
5139 7439 4.454728 TCTTGCTTGCTTGTTTGTTTCT 57.545 36.364 0.00 0.00 0.00 2.52
5140 7440 4.819769 TCTTGCTTGCTTGTTTGTTTCTT 58.180 34.783 0.00 0.00 0.00 2.52
5141 7441 4.864247 TCTTGCTTGCTTGTTTGTTTCTTC 59.136 37.500 0.00 0.00 0.00 2.87
5142 7442 4.454728 TGCTTGCTTGTTTGTTTCTTCT 57.545 36.364 0.00 0.00 0.00 2.85
5143 7443 4.819769 TGCTTGCTTGTTTGTTTCTTCTT 58.180 34.783 0.00 0.00 0.00 2.52
5144 7444 5.237048 TGCTTGCTTGTTTGTTTCTTCTTT 58.763 33.333 0.00 0.00 0.00 2.52
5145 7445 5.348451 TGCTTGCTTGTTTGTTTCTTCTTTC 59.652 36.000 0.00 0.00 0.00 2.62
5146 7446 5.578336 GCTTGCTTGTTTGTTTCTTCTTTCT 59.422 36.000 0.00 0.00 0.00 2.52
5147 7447 6.454715 GCTTGCTTGTTTGTTTCTTCTTTCTG 60.455 38.462 0.00 0.00 0.00 3.02
5148 7448 4.864247 TGCTTGTTTGTTTCTTCTTTCTGC 59.136 37.500 0.00 0.00 0.00 4.26
5149 7449 5.105063 GCTTGTTTGTTTCTTCTTTCTGCT 58.895 37.500 0.00 0.00 0.00 4.24
5150 7450 5.005107 GCTTGTTTGTTTCTTCTTTCTGCTG 59.995 40.000 0.00 0.00 0.00 4.41
5154 7454 6.150976 TGTTTGTTTCTTCTTTCTGCTGAAGA 59.849 34.615 6.13 0.00 44.51 2.87
5170 7470 2.744202 TGAAGAAGCCGAGCTGATTTTC 59.256 45.455 0.00 0.00 39.62 2.29
5172 7472 3.895232 AGAAGCCGAGCTGATTTTCTA 57.105 42.857 0.00 0.00 39.62 2.10
5174 7474 3.196685 AGAAGCCGAGCTGATTTTCTACT 59.803 43.478 0.00 0.00 39.62 2.57
5175 7475 3.172229 AGCCGAGCTGATTTTCTACTC 57.828 47.619 0.00 0.00 37.57 2.59
5179 7482 3.868077 CCGAGCTGATTTTCTACTCTTGG 59.132 47.826 0.00 0.00 0.00 3.61
5183 7486 6.401581 CGAGCTGATTTTCTACTCTTGGTTTC 60.402 42.308 0.00 0.00 0.00 2.78
5203 7506 1.227497 GCAGCGATTGGAGGAGGAG 60.227 63.158 0.00 0.00 0.00 3.69
5205 7508 0.539051 CAGCGATTGGAGGAGGAGTT 59.461 55.000 0.00 0.00 0.00 3.01
5207 7510 0.462759 GCGATTGGAGGAGGAGTTGG 60.463 60.000 0.00 0.00 0.00 3.77
5208 7511 0.905357 CGATTGGAGGAGGAGTTGGT 59.095 55.000 0.00 0.00 0.00 3.67
5209 7512 1.406069 CGATTGGAGGAGGAGTTGGTG 60.406 57.143 0.00 0.00 0.00 4.17
5210 7513 0.329596 ATTGGAGGAGGAGTTGGTGC 59.670 55.000 0.00 0.00 0.00 5.01
5211 7514 1.779061 TTGGAGGAGGAGTTGGTGCC 61.779 60.000 0.00 0.00 0.00 5.01
5212 7515 2.224159 GGAGGAGGAGTTGGTGCCA 61.224 63.158 0.00 0.00 0.00 4.92
5213 7516 1.761174 GAGGAGGAGTTGGTGCCAA 59.239 57.895 0.00 0.00 0.00 4.52
5214 7517 0.322008 GAGGAGGAGTTGGTGCCAAG 60.322 60.000 3.57 0.00 36.52 3.61
5215 7518 1.303643 GGAGGAGTTGGTGCCAAGG 60.304 63.158 3.57 0.00 36.52 3.61
5216 7519 1.761174 GAGGAGTTGGTGCCAAGGA 59.239 57.895 3.57 0.00 36.52 3.36
5217 7520 0.606673 GAGGAGTTGGTGCCAAGGAC 60.607 60.000 3.57 0.00 36.52 3.85
5218 7521 1.603739 GGAGTTGGTGCCAAGGACC 60.604 63.158 3.57 0.00 36.52 4.46
5220 7523 2.983592 GTTGGTGCCAAGGACCGG 60.984 66.667 0.00 0.00 36.52 5.28
5221 7524 3.172106 TTGGTGCCAAGGACCGGA 61.172 61.111 9.46 0.00 36.12 5.14
5222 7525 3.485346 TTGGTGCCAAGGACCGGAC 62.485 63.158 9.46 0.00 36.12 4.79
5223 7526 4.717313 GGTGCCAAGGACCGGACC 62.717 72.222 15.76 15.76 0.00 4.46
5224 7527 3.637273 GTGCCAAGGACCGGACCT 61.637 66.667 20.47 20.47 42.69 3.85
5225 7528 3.636231 TGCCAAGGACCGGACCTG 61.636 66.667 26.44 18.45 40.49 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.284034 AGCATGGTTAATAATATAGCCATCTGC 59.716 37.037 7.35 7.35 42.78 4.26
1 2 8.743085 AGCATGGTTAATAATATAGCCATCTG 57.257 34.615 0.00 0.00 42.78 2.90
2 3 8.776119 AGAGCATGGTTAATAATATAGCCATCT 58.224 33.333 0.00 2.31 42.78 2.90
3 4 8.970859 AGAGCATGGTTAATAATATAGCCATC 57.029 34.615 0.00 0.00 42.78 3.51
15 16 9.082313 CCCAGATTAAATAAGAGCATGGTTAAT 57.918 33.333 0.00 0.00 0.00 1.40
16 17 8.278639 TCCCAGATTAAATAAGAGCATGGTTAA 58.721 33.333 0.00 0.00 0.00 2.01
17 18 7.811282 TCCCAGATTAAATAAGAGCATGGTTA 58.189 34.615 0.00 0.00 0.00 2.85
18 19 6.672593 TCCCAGATTAAATAAGAGCATGGTT 58.327 36.000 0.00 0.00 0.00 3.67
19 20 6.266131 TCCCAGATTAAATAAGAGCATGGT 57.734 37.500 0.00 0.00 0.00 3.55
20 21 5.709164 CCTCCCAGATTAAATAAGAGCATGG 59.291 44.000 0.00 0.00 0.00 3.66
21 22 5.709164 CCCTCCCAGATTAAATAAGAGCATG 59.291 44.000 0.00 0.00 0.00 4.06
22 23 5.612688 TCCCTCCCAGATTAAATAAGAGCAT 59.387 40.000 0.00 0.00 0.00 3.79
23 24 4.975147 TCCCTCCCAGATTAAATAAGAGCA 59.025 41.667 0.00 0.00 0.00 4.26
24 25 5.308237 TCTCCCTCCCAGATTAAATAAGAGC 59.692 44.000 0.00 0.00 0.00 4.09
25 26 7.380423 TTCTCCCTCCCAGATTAAATAAGAG 57.620 40.000 0.00 0.00 0.00 2.85
26 27 7.765149 TTTCTCCCTCCCAGATTAAATAAGA 57.235 36.000 0.00 0.00 0.00 2.10
27 28 9.732130 CTATTTCTCCCTCCCAGATTAAATAAG 57.268 37.037 0.00 0.00 0.00 1.73
28 29 9.237706 ACTATTTCTCCCTCCCAGATTAAATAA 57.762 33.333 0.00 0.00 0.00 1.40
29 30 8.814448 ACTATTTCTCCCTCCCAGATTAAATA 57.186 34.615 0.00 0.00 0.00 1.40
30 31 7.713704 ACTATTTCTCCCTCCCAGATTAAAT 57.286 36.000 0.00 0.00 0.00 1.40
31 32 7.346471 CAACTATTTCTCCCTCCCAGATTAAA 58.654 38.462 0.00 0.00 0.00 1.52
32 33 6.634955 GCAACTATTTCTCCCTCCCAGATTAA 60.635 42.308 0.00 0.00 0.00 1.40
33 34 5.163195 GCAACTATTTCTCCCTCCCAGATTA 60.163 44.000 0.00 0.00 0.00 1.75
34 35 4.385754 GCAACTATTTCTCCCTCCCAGATT 60.386 45.833 0.00 0.00 0.00 2.40
35 36 3.137360 GCAACTATTTCTCCCTCCCAGAT 59.863 47.826 0.00 0.00 0.00 2.90
36 37 2.505819 GCAACTATTTCTCCCTCCCAGA 59.494 50.000 0.00 0.00 0.00 3.86
37 38 2.239654 TGCAACTATTTCTCCCTCCCAG 59.760 50.000 0.00 0.00 0.00 4.45
38 39 2.274542 TGCAACTATTTCTCCCTCCCA 58.725 47.619 0.00 0.00 0.00 4.37
39 40 3.584733 ATGCAACTATTTCTCCCTCCC 57.415 47.619 0.00 0.00 0.00 4.30
40 41 7.719633 TGTATAAATGCAACTATTTCTCCCTCC 59.280 37.037 0.00 0.00 0.00 4.30
41 42 8.677148 TGTATAAATGCAACTATTTCTCCCTC 57.323 34.615 0.00 0.00 0.00 4.30
48 49 9.965824 GCCACTTATGTATAAATGCAACTATTT 57.034 29.630 0.00 0.00 0.00 1.40
49 50 8.289618 CGCCACTTATGTATAAATGCAACTATT 58.710 33.333 0.00 0.00 0.00 1.73
50 51 7.659799 TCGCCACTTATGTATAAATGCAACTAT 59.340 33.333 0.00 0.00 0.00 2.12
51 52 6.987404 TCGCCACTTATGTATAAATGCAACTA 59.013 34.615 0.00 0.00 0.00 2.24
52 53 5.820423 TCGCCACTTATGTATAAATGCAACT 59.180 36.000 0.00 0.00 0.00 3.16
53 54 6.055231 TCGCCACTTATGTATAAATGCAAC 57.945 37.500 0.00 0.00 0.00 4.17
54 55 6.484977 TCATCGCCACTTATGTATAAATGCAA 59.515 34.615 0.00 0.00 0.00 4.08
55 56 5.994668 TCATCGCCACTTATGTATAAATGCA 59.005 36.000 0.00 0.00 0.00 3.96
56 57 6.480524 TCATCGCCACTTATGTATAAATGC 57.519 37.500 0.00 0.00 0.00 3.56
57 58 8.087982 ACTTCATCGCCACTTATGTATAAATG 57.912 34.615 0.00 0.00 0.00 2.32
58 59 8.150945 AGACTTCATCGCCACTTATGTATAAAT 58.849 33.333 0.00 0.00 0.00 1.40
59 60 7.497595 AGACTTCATCGCCACTTATGTATAAA 58.502 34.615 0.00 0.00 0.00 1.40
60 61 7.050970 AGACTTCATCGCCACTTATGTATAA 57.949 36.000 0.00 0.00 0.00 0.98
61 62 6.650427 AGACTTCATCGCCACTTATGTATA 57.350 37.500 0.00 0.00 0.00 1.47
62 63 5.537300 AGACTTCATCGCCACTTATGTAT 57.463 39.130 0.00 0.00 0.00 2.29
63 64 5.339008 AAGACTTCATCGCCACTTATGTA 57.661 39.130 0.00 0.00 0.00 2.29
64 65 3.895232 AGACTTCATCGCCACTTATGT 57.105 42.857 0.00 0.00 0.00 2.29
65 66 3.557595 GGAAGACTTCATCGCCACTTATG 59.442 47.826 16.85 0.00 0.00 1.90
66 67 3.197766 TGGAAGACTTCATCGCCACTTAT 59.802 43.478 16.85 0.00 33.37 1.73
67 68 2.565391 TGGAAGACTTCATCGCCACTTA 59.435 45.455 16.85 0.00 33.37 2.24
68 69 1.347707 TGGAAGACTTCATCGCCACTT 59.652 47.619 16.85 0.00 33.37 3.16
69 70 0.976641 TGGAAGACTTCATCGCCACT 59.023 50.000 16.85 0.00 33.37 4.00
70 71 1.079503 GTGGAAGACTTCATCGCCAC 58.920 55.000 16.85 11.61 44.76 5.01
71 72 0.684535 TGTGGAAGACTTCATCGCCA 59.315 50.000 16.85 3.10 35.19 5.69
72 73 1.808411 TTGTGGAAGACTTCATCGCC 58.192 50.000 16.85 0.34 0.00 5.54
73 74 5.545658 TTTATTGTGGAAGACTTCATCGC 57.454 39.130 16.85 7.64 0.00 4.58
99 100 6.908825 TGTAGCGATTGCAAAAGAATTACTT 58.091 32.000 1.71 0.00 46.23 2.24
119 123 5.574055 GTGGAATTGTGCATGTTTCATGTAG 59.426 40.000 10.68 0.00 0.00 2.74
141 153 7.403312 TGGGAATCCAAGTGTATTTATTGTG 57.597 36.000 0.09 0.00 40.73 3.33
185 202 1.252904 AATGCTGCCATGCGTTTCCT 61.253 50.000 0.00 0.00 38.86 3.36
236 253 4.990553 GGAGCCGCCGGATTAGCC 62.991 72.222 7.68 0.00 0.00 3.93
283 300 4.424566 CACTTGGCATGGCACGGC 62.425 66.667 26.18 0.00 0.00 5.68
284 301 4.424566 GCACTTGGCATGGCACGG 62.425 66.667 26.18 21.05 43.97 4.94
286 303 3.304721 TGGCACTTGGCATGGCAC 61.305 61.111 23.26 10.34 46.63 5.01
297 314 1.620589 ATGGATGGAGGGTGGCACT 60.621 57.895 18.45 0.00 0.00 4.40
320 337 1.077501 ACTGCCCATTGGACGATGG 60.078 57.895 11.01 11.01 45.05 3.51
321 338 1.431488 CGACTGCCCATTGGACGATG 61.431 60.000 3.62 0.00 0.00 3.84
322 339 1.153369 CGACTGCCCATTGGACGAT 60.153 57.895 3.62 0.00 0.00 3.73
323 340 2.264480 CGACTGCCCATTGGACGA 59.736 61.111 3.62 0.00 0.00 4.20
324 341 3.499737 GCGACTGCCCATTGGACG 61.500 66.667 3.62 3.44 33.98 4.79
358 375 3.332493 TAACCGACGCGTCCAGCTC 62.332 63.158 31.84 8.55 45.59 4.09
402 419 9.868277 ATCTCATCTCAAAGACTAGTAAAACTG 57.132 33.333 0.00 0.00 0.00 3.16
403 420 9.868277 CATCTCATCTCAAAGACTAGTAAAACT 57.132 33.333 0.00 0.00 0.00 2.66
421 462 5.769484 ACATGCCATTTTCTCATCTCATC 57.231 39.130 0.00 0.00 0.00 2.92
422 463 5.068723 GGAACATGCCATTTTCTCATCTCAT 59.931 40.000 3.78 0.00 0.00 2.90
423 464 4.400251 GGAACATGCCATTTTCTCATCTCA 59.600 41.667 3.78 0.00 0.00 3.27
424 465 4.400251 TGGAACATGCCATTTTCTCATCTC 59.600 41.667 3.78 0.00 31.66 2.75
425 466 4.346730 TGGAACATGCCATTTTCTCATCT 58.653 39.130 3.78 0.00 31.66 2.90
426 467 4.679662 CTGGAACATGCCATTTTCTCATC 58.320 43.478 3.78 0.00 38.20 2.92
427 468 3.118884 GCTGGAACATGCCATTTTCTCAT 60.119 43.478 3.78 0.00 38.20 2.90
495 541 3.839293 TCCGTTTGTTTGTTTGTTCCTG 58.161 40.909 0.00 0.00 0.00 3.86
496 542 4.522722 TTCCGTTTGTTTGTTTGTTCCT 57.477 36.364 0.00 0.00 0.00 3.36
498 544 4.143073 GGGTTTCCGTTTGTTTGTTTGTTC 60.143 41.667 0.00 0.00 0.00 3.18
556 618 0.806492 GTTTGAGAGGATCGGCGTCC 60.806 60.000 17.16 17.16 42.67 4.79
590 652 4.872691 CACAGGCTAGTACAGATTGGAAAG 59.127 45.833 0.00 0.00 0.00 2.62
596 658 6.407525 GGAAGAATCACAGGCTAGTACAGATT 60.408 42.308 0.00 0.00 0.00 2.40
597 659 5.069781 GGAAGAATCACAGGCTAGTACAGAT 59.930 44.000 0.00 0.00 0.00 2.90
598 660 4.402793 GGAAGAATCACAGGCTAGTACAGA 59.597 45.833 0.00 0.00 0.00 3.41
599 661 4.160439 TGGAAGAATCACAGGCTAGTACAG 59.840 45.833 0.00 0.00 0.00 2.74
601 663 4.434520 GTGGAAGAATCACAGGCTAGTAC 58.565 47.826 0.00 0.00 35.39 2.73
602 664 3.451178 GGTGGAAGAATCACAGGCTAGTA 59.549 47.826 0.00 0.00 36.90 1.82
604 666 2.420687 GGGTGGAAGAATCACAGGCTAG 60.421 54.545 0.00 0.00 36.90 3.42
605 667 1.559682 GGGTGGAAGAATCACAGGCTA 59.440 52.381 0.00 0.00 36.90 3.93
607 669 0.681243 GGGGTGGAAGAATCACAGGC 60.681 60.000 0.00 0.00 36.90 4.85
608 670 0.995024 AGGGGTGGAAGAATCACAGG 59.005 55.000 0.00 0.00 36.90 4.00
691 766 1.694133 GGGAGGATGACAGCTGAGGG 61.694 65.000 23.35 0.00 0.00 4.30
838 938 1.120530 GGAGGGCTCGGTTCTTGATA 58.879 55.000 0.00 0.00 0.00 2.15
857 958 4.154347 GCCTGCACGGAGAGAGGG 62.154 72.222 6.40 0.00 33.16 4.30
917 1018 2.216898 GATCTTGATTGGCGGAGAAGG 58.783 52.381 0.00 0.00 0.00 3.46
1257 1646 1.026718 GGGTGAGGAACATGAAGGCG 61.027 60.000 0.00 0.00 0.00 5.52
1344 1781 8.726988 GTGGATGCAAGAACTAGTAATAACAAA 58.273 33.333 0.00 0.00 0.00 2.83
1346 1783 6.533723 CGTGGATGCAAGAACTAGTAATAACA 59.466 38.462 0.00 0.00 0.00 2.41
1347 1784 6.534079 ACGTGGATGCAAGAACTAGTAATAAC 59.466 38.462 7.22 0.00 0.00 1.89
1350 1787 4.870426 CACGTGGATGCAAGAACTAGTAAT 59.130 41.667 7.95 0.00 0.00 1.89
1413 1852 7.872993 TCCTTACTATATGCAGTAATTCACAGC 59.127 37.037 0.00 0.00 39.60 4.40
1441 1880 5.934625 ACAGATGTCAAACTGTATGTCCTTC 59.065 40.000 12.35 0.00 44.06 3.46
1451 1890 2.606308 GCAAGCCACAGATGTCAAACTG 60.606 50.000 8.29 8.29 39.65 3.16
1472 1911 8.964476 TCCACCTCTAAATCTTGCTTATTTAG 57.036 34.615 14.62 14.62 43.57 1.85
1492 1939 3.081804 CACCAAGACCAAGTAATCCACC 58.918 50.000 0.00 0.00 0.00 4.61
1525 1972 4.098894 AGGTACGGAGAGGTAAAATGGAA 58.901 43.478 0.00 0.00 0.00 3.53
1532 1979 4.263243 GCTATCCTAGGTACGGAGAGGTAA 60.263 50.000 9.08 0.00 39.64 2.85
1545 1992 4.802248 GCAATCAGTTCAGGCTATCCTAGG 60.802 50.000 0.82 0.82 41.93 3.02
1650 2097 5.643379 AATGGTCGCACAAAGTATCATTT 57.357 34.783 0.00 0.00 0.00 2.32
1665 2112 7.758980 TGGAACATAAAATCAATGAAATGGTCG 59.241 33.333 8.91 0.00 32.96 4.79
1905 2356 1.002468 ACAGCGTTCAAACTGTGCATC 60.002 47.619 0.00 0.00 45.19 3.91
2069 2521 0.940126 AGCTTCTGAACACTGTTGCG 59.060 50.000 0.00 0.00 0.00 4.85
2165 2617 0.598065 GAGCATTCGCCAACAACCTT 59.402 50.000 0.00 0.00 39.83 3.50
2326 2785 8.306313 TCAGGTAGTCATACACATAGTCAAAT 57.694 34.615 0.00 0.00 33.21 2.32
2729 3190 9.457436 TCACAAAAATAGAGTAAAATAGGGGAC 57.543 33.333 0.00 0.00 0.00 4.46
2924 5041 7.419204 GGTAGAGATATGTCTGACAACTGTAC 58.581 42.308 24.27 24.27 33.97 2.90
2947 5064 0.767375 ATGCTGTGAGACAACTGGGT 59.233 50.000 0.00 0.00 0.00 4.51
3193 5310 9.209175 TCACGGACATTTTATTTTATTTTTGGG 57.791 29.630 0.00 0.00 0.00 4.12
3315 5432 6.463995 AGAAAAGATGTGTGCTAAAACCAA 57.536 33.333 0.00 0.00 0.00 3.67
3324 5441 7.918562 TGGTAAACTAAAAGAAAAGATGTGTGC 59.081 33.333 0.00 0.00 0.00 4.57
3333 5450 9.095700 AGCCCATTATGGTAAACTAAAAGAAAA 57.904 29.630 10.65 0.00 35.17 2.29
3411 5528 1.605232 CTCATCGGCATAGCAATTGCA 59.395 47.619 30.89 17.58 45.16 4.08
3608 5725 1.923356 TTGGATGCCACTTTCCTTCC 58.077 50.000 0.00 0.00 30.78 3.46
3747 5865 7.839907 TGGAATTAGAACCAATTTTGAGATGG 58.160 34.615 0.00 0.00 40.16 3.51
3806 5925 3.194861 GCTATCGCTTGTAACATGGTGA 58.805 45.455 0.00 0.00 0.00 4.02
3843 5962 4.314740 ACAAACACACAGAGAGAGAGAC 57.685 45.455 0.00 0.00 0.00 3.36
3855 6018 1.385075 CACGCACACAAACAAACACAC 59.615 47.619 0.00 0.00 0.00 3.82
3856 6019 1.001268 ACACGCACACAAACAAACACA 60.001 42.857 0.00 0.00 0.00 3.72
3857 6020 1.385075 CACACGCACACAAACAAACAC 59.615 47.619 0.00 0.00 0.00 3.32
3858 6021 1.001268 ACACACGCACACAAACAAACA 60.001 42.857 0.00 0.00 0.00 2.83
3859 6022 1.385075 CACACACGCACACAAACAAAC 59.615 47.619 0.00 0.00 0.00 2.93
3860 6023 1.001268 ACACACACGCACACAAACAAA 60.001 42.857 0.00 0.00 0.00 2.83
3861 6024 0.593618 ACACACACGCACACAAACAA 59.406 45.000 0.00 0.00 0.00 2.83
3862 6025 0.110010 CACACACACGCACACAAACA 60.110 50.000 0.00 0.00 0.00 2.83
3863 6026 0.109964 ACACACACACGCACACAAAC 60.110 50.000 0.00 0.00 0.00 2.93
3864 6027 0.167033 GACACACACACGCACACAAA 59.833 50.000 0.00 0.00 0.00 2.83
3865 6028 0.672091 AGACACACACACGCACACAA 60.672 50.000 0.00 0.00 0.00 3.33
3866 6029 1.079474 AGACACACACACGCACACA 60.079 52.632 0.00 0.00 0.00 3.72
3867 6030 0.806102 AGAGACACACACACGCACAC 60.806 55.000 0.00 0.00 0.00 3.82
3868 6031 0.527600 GAGAGACACACACACGCACA 60.528 55.000 0.00 0.00 0.00 4.57
3869 6032 0.249073 AGAGAGACACACACACGCAC 60.249 55.000 0.00 0.00 0.00 5.34
3870 6033 0.030773 GAGAGAGACACACACACGCA 59.969 55.000 0.00 0.00 0.00 5.24
3871 6034 0.312416 AGAGAGAGACACACACACGC 59.688 55.000 0.00 0.00 0.00 5.34
3872 6035 1.604278 TGAGAGAGAGACACACACACG 59.396 52.381 0.00 0.00 0.00 4.49
3873 6036 3.717400 TTGAGAGAGAGACACACACAC 57.283 47.619 0.00 0.00 0.00 3.82
3874 6037 3.553715 GCATTGAGAGAGAGACACACACA 60.554 47.826 0.00 0.00 0.00 3.72
3875 6038 2.992543 GCATTGAGAGAGAGACACACAC 59.007 50.000 0.00 0.00 0.00 3.82
3876 6039 2.896044 AGCATTGAGAGAGAGACACACA 59.104 45.455 0.00 0.00 0.00 3.72
3877 6040 3.591196 AGCATTGAGAGAGAGACACAC 57.409 47.619 0.00 0.00 0.00 3.82
3878 6041 3.366781 CGAAGCATTGAGAGAGAGACACA 60.367 47.826 0.00 0.00 0.00 3.72
3879 6042 3.178267 CGAAGCATTGAGAGAGAGACAC 58.822 50.000 0.00 0.00 0.00 3.67
3880 6043 3.500558 CGAAGCATTGAGAGAGAGACA 57.499 47.619 0.00 0.00 0.00 3.41
3900 6063 3.889196 TTGTCAGGTAAATGTGAACGC 57.111 42.857 0.00 0.00 0.00 4.84
3904 6067 7.920151 CACTTTGAATTTGTCAGGTAAATGTGA 59.080 33.333 0.00 0.00 37.61 3.58
3922 6085 7.645058 AGTTCCTTTTCTTCATCACTTTGAA 57.355 32.000 0.00 0.00 34.55 2.69
4047 6210 2.498078 GGACTCAGGGTAGAACTTCCTG 59.502 54.545 13.62 13.62 46.91 3.86
4177 6340 7.989741 AGATCTAATGTCCTTCCAAATGTACAG 59.010 37.037 0.33 0.00 0.00 2.74
4204 6367 7.685481 TCTTCTATATCCACCAACTTGTCAAA 58.315 34.615 0.00 0.00 0.00 2.69
4230 6393 2.557056 CGAATGCCTTCTCCTCCGTATA 59.443 50.000 0.13 0.00 0.00 1.47
4232 6395 0.744874 CGAATGCCTTCTCCTCCGTA 59.255 55.000 0.13 0.00 0.00 4.02
4233 6396 1.517832 CGAATGCCTTCTCCTCCGT 59.482 57.895 0.13 0.00 0.00 4.69
4234 6397 1.884926 GCGAATGCCTTCTCCTCCG 60.885 63.158 0.13 0.00 33.98 4.63
4235 6398 0.813210 CAGCGAATGCCTTCTCCTCC 60.813 60.000 0.13 0.00 44.31 4.30
4236 6399 2.687842 CAGCGAATGCCTTCTCCTC 58.312 57.895 0.13 0.00 44.31 3.71
4237 6400 4.950479 CAGCGAATGCCTTCTCCT 57.050 55.556 0.13 0.00 44.31 3.69
4293 6456 2.569853 TCCTGGAGCGAGTTAAAATGGA 59.430 45.455 0.00 0.00 0.00 3.41
4700 6869 7.554959 AGTTTTCCCAGACAGAAAGAGTATA 57.445 36.000 0.00 0.00 34.84 1.47
4701 6870 6.441088 AGTTTTCCCAGACAGAAAGAGTAT 57.559 37.500 0.00 0.00 34.84 2.12
4702 6871 5.888982 AGTTTTCCCAGACAGAAAGAGTA 57.111 39.130 0.00 0.00 34.84 2.59
4703 6872 4.779993 AGTTTTCCCAGACAGAAAGAGT 57.220 40.909 0.00 0.00 34.84 3.24
4704 6873 4.884164 ACAAGTTTTCCCAGACAGAAAGAG 59.116 41.667 0.00 0.00 34.84 2.85
4705 6874 4.855340 ACAAGTTTTCCCAGACAGAAAGA 58.145 39.130 0.00 0.00 34.84 2.52
4706 6875 4.036852 GGACAAGTTTTCCCAGACAGAAAG 59.963 45.833 0.00 0.00 34.84 2.62
4707 6876 3.951680 GGACAAGTTTTCCCAGACAGAAA 59.048 43.478 0.00 0.00 0.00 2.52
4708 6877 3.551846 GGACAAGTTTTCCCAGACAGAA 58.448 45.455 0.00 0.00 0.00 3.02
4709 6878 3.208747 GGACAAGTTTTCCCAGACAGA 57.791 47.619 0.00 0.00 0.00 3.41
4717 6886 1.524008 CCGCCAGGGACAAGTTTTCC 61.524 60.000 0.00 0.00 38.47 3.13
4718 6887 0.822121 ACCGCCAGGGACAAGTTTTC 60.822 55.000 0.00 0.00 43.47 2.29
4719 6888 0.475044 TACCGCCAGGGACAAGTTTT 59.525 50.000 0.00 0.00 43.47 2.43
4720 6889 0.696501 ATACCGCCAGGGACAAGTTT 59.303 50.000 0.00 0.00 43.47 2.66
4721 6890 0.696501 AATACCGCCAGGGACAAGTT 59.303 50.000 0.00 0.00 43.47 2.66
4722 6891 0.696501 AAATACCGCCAGGGACAAGT 59.303 50.000 0.00 0.00 43.47 3.16
4723 6892 1.834188 AAAATACCGCCAGGGACAAG 58.166 50.000 0.00 0.00 43.47 3.16
4724 6893 2.618559 GGTAAAATACCGCCAGGGACAA 60.619 50.000 0.00 0.00 43.47 3.18
4725 6894 1.065272 GGTAAAATACCGCCAGGGACA 60.065 52.381 0.00 0.00 43.47 4.02
4726 6895 1.671979 GGTAAAATACCGCCAGGGAC 58.328 55.000 0.00 0.00 43.47 4.46
4750 6919 1.607148 CGAAGGAAAGGCGAGGTTTTT 59.393 47.619 0.00 0.00 0.00 1.94
4751 6920 1.202722 TCGAAGGAAAGGCGAGGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
4752 6921 0.395312 TCGAAGGAAAGGCGAGGTTT 59.605 50.000 0.00 0.00 0.00 3.27
4753 6922 0.320508 GTCGAAGGAAAGGCGAGGTT 60.321 55.000 0.00 0.00 34.41 3.50
4754 6923 1.292541 GTCGAAGGAAAGGCGAGGT 59.707 57.895 0.00 0.00 34.41 3.85
4755 6924 0.320421 TTGTCGAAGGAAAGGCGAGG 60.320 55.000 0.00 0.00 34.41 4.63
4756 6925 1.194772 GTTTGTCGAAGGAAAGGCGAG 59.805 52.381 0.00 0.00 34.41 5.03
4757 6926 1.223187 GTTTGTCGAAGGAAAGGCGA 58.777 50.000 0.00 0.00 0.00 5.54
4758 6927 0.237498 GGTTTGTCGAAGGAAAGGCG 59.763 55.000 0.00 0.00 0.00 5.52
4759 6928 1.001706 GTGGTTTGTCGAAGGAAAGGC 60.002 52.381 0.00 0.00 0.00 4.35
4760 6929 1.263217 CGTGGTTTGTCGAAGGAAAGG 59.737 52.381 0.00 0.00 0.00 3.11
4761 6930 1.333791 GCGTGGTTTGTCGAAGGAAAG 60.334 52.381 0.00 0.00 0.00 2.62
4762 6931 0.658897 GCGTGGTTTGTCGAAGGAAA 59.341 50.000 0.00 0.00 0.00 3.13
4763 6932 1.492319 CGCGTGGTTTGTCGAAGGAA 61.492 55.000 0.00 0.00 0.00 3.36
4764 6933 1.952133 CGCGTGGTTTGTCGAAGGA 60.952 57.895 0.00 0.00 0.00 3.36
4765 6934 2.549282 CGCGTGGTTTGTCGAAGG 59.451 61.111 0.00 0.00 0.00 3.46
4766 6935 2.549282 CCGCGTGGTTTGTCGAAG 59.451 61.111 6.91 0.00 0.00 3.79
4767 6936 3.641986 GCCGCGTGGTTTGTCGAA 61.642 61.111 17.91 0.00 37.67 3.71
4785 6954 4.335647 ACGGAGCAGGCTTGGTGG 62.336 66.667 4.81 0.00 34.61 4.61
4786 6955 2.743928 GACGGAGCAGGCTTGGTG 60.744 66.667 4.81 0.00 34.61 4.17
4787 6956 4.379243 CGACGGAGCAGGCTTGGT 62.379 66.667 0.00 0.00 37.84 3.67
4845 7014 0.241213 CGGTGCAGACGAAGAGAAGA 59.759 55.000 4.83 0.00 0.00 2.87
4853 7022 2.362503 ATCTCCCGGTGCAGACGA 60.363 61.111 11.91 0.00 0.00 4.20
4857 7026 1.817099 GCTTGATCTCCCGGTGCAG 60.817 63.158 0.00 0.00 0.00 4.41
4858 7027 2.268920 GCTTGATCTCCCGGTGCA 59.731 61.111 0.00 0.00 0.00 4.57
4863 7032 1.227380 CTTCCCGCTTGATCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
4864 7033 1.147153 CCTTCCCGCTTGATCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
4934 7103 1.754234 GAGCAATTCACGGGGGCAT 60.754 57.895 0.00 0.00 0.00 4.40
4935 7104 2.361104 GAGCAATTCACGGGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
4936 7105 3.140814 GGAGCAATTCACGGGGGC 61.141 66.667 0.00 0.00 0.00 5.80
4937 7106 1.750399 CTGGAGCAATTCACGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
4938 7107 2.409870 GCTGGAGCAATTCACGGGG 61.410 63.158 0.00 0.00 41.59 5.73
4940 7109 1.675310 TGGCTGGAGCAATTCACGG 60.675 57.895 0.20 0.00 44.36 4.94
4943 7112 1.179152 CATGTGGCTGGAGCAATTCA 58.821 50.000 0.20 0.00 44.36 2.57
4946 7199 1.304630 TGCATGTGGCTGGAGCAAT 60.305 52.632 0.20 0.00 45.15 3.56
4955 7208 3.044059 GCGGTTCTCTGCATGTGGC 62.044 63.158 0.00 0.00 44.61 5.01
4956 7209 2.401766 GGCGGTTCTCTGCATGTGG 61.402 63.158 0.00 0.00 46.81 4.17
4959 7212 1.817099 GAGGGCGGTTCTCTGCATG 60.817 63.158 0.00 0.00 46.81 4.06
4964 7217 3.007973 GCGAAGAGGGCGGTTCTCT 62.008 63.158 0.00 0.00 42.81 3.10
4965 7218 2.509561 GCGAAGAGGGCGGTTCTC 60.510 66.667 0.00 0.00 0.00 2.87
4966 7219 2.997897 AGCGAAGAGGGCGGTTCT 60.998 61.111 0.00 0.00 35.82 3.01
4971 7271 4.821589 GGTGGAGCGAAGAGGGCG 62.822 72.222 0.00 0.00 35.00 6.13
4974 7274 4.821589 GCCGGTGGAGCGAAGAGG 62.822 72.222 1.90 0.00 0.00 3.69
5023 7323 1.446966 GCAGGAGACGGAGACAAGC 60.447 63.158 0.00 0.00 0.00 4.01
5026 7326 1.893062 CATGCAGGAGACGGAGACA 59.107 57.895 0.00 0.00 0.00 3.41
5027 7327 1.520342 GCATGCAGGAGACGGAGAC 60.520 63.158 14.21 0.00 0.00 3.36
5030 7330 2.895680 GAGCATGCAGGAGACGGA 59.104 61.111 21.98 0.00 0.00 4.69
5034 7334 0.108472 CTTGTCGAGCATGCAGGAGA 60.108 55.000 21.98 11.99 0.00 3.71
5035 7335 1.088340 CCTTGTCGAGCATGCAGGAG 61.088 60.000 21.98 7.90 0.00 3.69
5036 7336 1.078918 CCTTGTCGAGCATGCAGGA 60.079 57.895 21.98 13.57 0.00 3.86
5037 7337 0.108186 TACCTTGTCGAGCATGCAGG 60.108 55.000 21.98 18.47 0.00 4.85
5039 7339 0.391130 GGTACCTTGTCGAGCATGCA 60.391 55.000 21.98 0.00 0.00 3.96
5040 7340 1.421410 CGGTACCTTGTCGAGCATGC 61.421 60.000 10.51 10.51 0.00 4.06
5041 7341 1.421410 GCGGTACCTTGTCGAGCATG 61.421 60.000 10.90 0.00 0.00 4.06
5042 7342 1.153628 GCGGTACCTTGTCGAGCAT 60.154 57.895 10.90 0.00 0.00 3.79
5043 7343 2.260434 GCGGTACCTTGTCGAGCA 59.740 61.111 10.90 0.00 0.00 4.26
5046 7346 1.870055 GACCTGCGGTACCTTGTCGA 61.870 60.000 10.90 0.00 35.25 4.20
5048 7348 0.108756 GAGACCTGCGGTACCTTGTC 60.109 60.000 10.90 10.55 35.25 3.18
5049 7349 0.542232 AGAGACCTGCGGTACCTTGT 60.542 55.000 10.90 1.15 35.25 3.16
5050 7350 0.108615 CAGAGACCTGCGGTACCTTG 60.109 60.000 10.90 0.00 35.25 3.61
5051 7351 0.542232 ACAGAGACCTGCGGTACCTT 60.542 55.000 10.90 0.00 44.16 3.50
5052 7352 0.966370 GACAGAGACCTGCGGTACCT 60.966 60.000 10.90 0.00 44.16 3.08
5053 7353 0.966370 AGACAGAGACCTGCGGTACC 60.966 60.000 0.16 0.16 44.16 3.34
5056 7356 1.979693 GGAGACAGAGACCTGCGGT 60.980 63.158 0.00 0.00 44.16 5.68
5057 7357 2.888863 GGAGACAGAGACCTGCGG 59.111 66.667 0.00 0.00 44.16 5.69
5058 7358 2.487428 CGGAGACAGAGACCTGCG 59.513 66.667 0.00 0.00 44.16 5.18
5059 7359 2.183046 GCGGAGACAGAGACCTGC 59.817 66.667 0.00 0.00 44.16 4.85
5060 7360 2.888863 GGCGGAGACAGAGACCTG 59.111 66.667 0.00 0.00 45.76 4.00
5061 7361 2.752238 CGGCGGAGACAGAGACCT 60.752 66.667 0.00 0.00 27.25 3.85
5062 7362 4.500116 GCGGCGGAGACAGAGACC 62.500 72.222 9.78 0.00 27.25 3.85
5063 7363 4.500116 GGCGGCGGAGACAGAGAC 62.500 72.222 9.78 0.00 27.25 3.36
5085 7385 2.125753 GAGACCAGCAGCAGACGG 60.126 66.667 0.00 0.00 0.00 4.79
5086 7386 0.320247 AAAGAGACCAGCAGCAGACG 60.320 55.000 0.00 0.00 0.00 4.18
5088 7388 1.346062 AGAAAGAGACCAGCAGCAGA 58.654 50.000 0.00 0.00 0.00 4.26
5089 7389 2.075338 GAAGAAAGAGACCAGCAGCAG 58.925 52.381 0.00 0.00 0.00 4.24
5090 7390 1.417517 TGAAGAAAGAGACCAGCAGCA 59.582 47.619 0.00 0.00 0.00 4.41
5091 7391 2.175878 TGAAGAAAGAGACCAGCAGC 57.824 50.000 0.00 0.00 0.00 5.25
5092 7392 3.008330 CCATGAAGAAAGAGACCAGCAG 58.992 50.000 0.00 0.00 0.00 4.24
5093 7393 2.639347 TCCATGAAGAAAGAGACCAGCA 59.361 45.455 0.00 0.00 0.00 4.41
5094 7394 3.340814 TCCATGAAGAAAGAGACCAGC 57.659 47.619 0.00 0.00 0.00 4.85
5095 7395 6.658391 AGAAAATCCATGAAGAAAGAGACCAG 59.342 38.462 0.00 0.00 0.00 4.00
5096 7396 6.546484 AGAAAATCCATGAAGAAAGAGACCA 58.454 36.000 0.00 0.00 0.00 4.02
5097 7397 7.311408 CAAGAAAATCCATGAAGAAAGAGACC 58.689 38.462 0.00 0.00 0.00 3.85
5098 7398 6.805760 GCAAGAAAATCCATGAAGAAAGAGAC 59.194 38.462 0.00 0.00 0.00 3.36
5099 7399 6.718454 AGCAAGAAAATCCATGAAGAAAGAGA 59.282 34.615 0.00 0.00 0.00 3.10
5100 7400 6.921914 AGCAAGAAAATCCATGAAGAAAGAG 58.078 36.000 0.00 0.00 0.00 2.85
5101 7401 6.906157 AGCAAGAAAATCCATGAAGAAAGA 57.094 33.333 0.00 0.00 0.00 2.52
5102 7402 6.128634 GCAAGCAAGAAAATCCATGAAGAAAG 60.129 38.462 0.00 0.00 0.00 2.62
5103 7403 5.697633 GCAAGCAAGAAAATCCATGAAGAAA 59.302 36.000 0.00 0.00 0.00 2.52
5104 7404 5.011329 AGCAAGCAAGAAAATCCATGAAGAA 59.989 36.000 0.00 0.00 0.00 2.52
5105 7405 4.525487 AGCAAGCAAGAAAATCCATGAAGA 59.475 37.500 0.00 0.00 0.00 2.87
5106 7406 4.817517 AGCAAGCAAGAAAATCCATGAAG 58.182 39.130 0.00 0.00 0.00 3.02
5107 7407 4.877378 AGCAAGCAAGAAAATCCATGAA 57.123 36.364 0.00 0.00 0.00 2.57
5108 7408 4.039488 ACAAGCAAGCAAGAAAATCCATGA 59.961 37.500 0.00 0.00 0.00 3.07
5109 7409 4.312443 ACAAGCAAGCAAGAAAATCCATG 58.688 39.130 0.00 0.00 0.00 3.66
5110 7410 4.612264 ACAAGCAAGCAAGAAAATCCAT 57.388 36.364 0.00 0.00 0.00 3.41
5111 7411 4.405116 AACAAGCAAGCAAGAAAATCCA 57.595 36.364 0.00 0.00 0.00 3.41
5112 7412 4.571984 ACAAACAAGCAAGCAAGAAAATCC 59.428 37.500 0.00 0.00 0.00 3.01
5113 7413 5.723492 ACAAACAAGCAAGCAAGAAAATC 57.277 34.783 0.00 0.00 0.00 2.17
5114 7414 6.372381 AGAAACAAACAAGCAAGCAAGAAAAT 59.628 30.769 0.00 0.00 0.00 1.82
5115 7415 5.700373 AGAAACAAACAAGCAAGCAAGAAAA 59.300 32.000 0.00 0.00 0.00 2.29
5116 7416 5.237048 AGAAACAAACAAGCAAGCAAGAAA 58.763 33.333 0.00 0.00 0.00 2.52
5117 7417 4.819769 AGAAACAAACAAGCAAGCAAGAA 58.180 34.783 0.00 0.00 0.00 2.52
5118 7418 4.454728 AGAAACAAACAAGCAAGCAAGA 57.545 36.364 0.00 0.00 0.00 3.02
5119 7419 4.866486 AGAAGAAACAAACAAGCAAGCAAG 59.134 37.500 0.00 0.00 0.00 4.01
5120 7420 4.819769 AGAAGAAACAAACAAGCAAGCAA 58.180 34.783 0.00 0.00 0.00 3.91
5121 7421 4.454728 AGAAGAAACAAACAAGCAAGCA 57.545 36.364 0.00 0.00 0.00 3.91
5122 7422 5.578336 AGAAAGAAGAAACAAACAAGCAAGC 59.422 36.000 0.00 0.00 0.00 4.01
5123 7423 6.454715 GCAGAAAGAAGAAACAAACAAGCAAG 60.455 38.462 0.00 0.00 0.00 4.01
5124 7424 5.348451 GCAGAAAGAAGAAACAAACAAGCAA 59.652 36.000 0.00 0.00 0.00 3.91
5125 7425 4.864247 GCAGAAAGAAGAAACAAACAAGCA 59.136 37.500 0.00 0.00 0.00 3.91
5126 7426 5.005107 CAGCAGAAAGAAGAAACAAACAAGC 59.995 40.000 0.00 0.00 0.00 4.01
5127 7427 6.324819 TCAGCAGAAAGAAGAAACAAACAAG 58.675 36.000 0.00 0.00 0.00 3.16
5128 7428 6.266168 TCAGCAGAAAGAAGAAACAAACAA 57.734 33.333 0.00 0.00 0.00 2.83
5129 7429 5.895636 TCAGCAGAAAGAAGAAACAAACA 57.104 34.783 0.00 0.00 0.00 2.83
5130 7430 6.555315 TCTTCAGCAGAAAGAAGAAACAAAC 58.445 36.000 2.65 0.00 45.13 2.93
5131 7431 6.757897 TCTTCAGCAGAAAGAAGAAACAAA 57.242 33.333 2.65 0.00 45.13 2.83
5148 7448 2.021355 AATCAGCTCGGCTTCTTCAG 57.979 50.000 0.00 0.00 36.40 3.02
5149 7449 2.479566 AAATCAGCTCGGCTTCTTCA 57.520 45.000 0.00 0.00 36.40 3.02
5150 7450 3.006247 AGAAAATCAGCTCGGCTTCTTC 58.994 45.455 0.00 0.00 36.40 2.87
5154 7454 3.196685 AGAGTAGAAAATCAGCTCGGCTT 59.803 43.478 0.00 0.00 36.40 4.35
5157 7457 3.868077 CCAAGAGTAGAAAATCAGCTCGG 59.132 47.826 0.00 0.00 0.00 4.63
5158 7458 4.499183 ACCAAGAGTAGAAAATCAGCTCG 58.501 43.478 0.00 0.00 0.00 5.03
5170 7470 1.728971 CGCTGCAGAAACCAAGAGTAG 59.271 52.381 20.43 0.00 0.00 2.57
5172 7472 0.106708 TCGCTGCAGAAACCAAGAGT 59.893 50.000 20.43 0.00 0.00 3.24
5174 7474 1.536766 CAATCGCTGCAGAAACCAAGA 59.463 47.619 20.43 4.59 0.00 3.02
5175 7475 1.401931 CCAATCGCTGCAGAAACCAAG 60.402 52.381 20.43 0.00 0.00 3.61
5179 7482 0.449388 CCTCCAATCGCTGCAGAAAC 59.551 55.000 20.43 0.00 0.00 2.78
5183 7486 1.523258 CCTCCTCCAATCGCTGCAG 60.523 63.158 10.11 10.11 0.00 4.41
5203 7506 2.983592 CCGGTCCTTGGCACCAAC 60.984 66.667 0.00 0.00 32.89 3.77
5205 7508 3.948719 GTCCGGTCCTTGGCACCA 61.949 66.667 0.00 0.00 32.89 4.17
5207 7510 3.637273 AGGTCCGGTCCTTGGCAC 61.637 66.667 15.13 0.00 33.52 5.01
5208 7511 3.636231 CAGGTCCGGTCCTTGGCA 61.636 66.667 18.37 0.00 35.37 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.