Multiple sequence alignment - TraesCS2D01G428600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G428600 chr2D 100.000 4423 0 0 1 4423 540636463 540640885 0.000000e+00 8168.0
1 TraesCS2D01G428600 chr2D 85.517 145 17 4 2 144 636791932 636792074 9.910000e-32 148.0
2 TraesCS2D01G428600 chr2A 88.810 2824 173 54 505 3276 684119788 684122520 0.000000e+00 3332.0
3 TraesCS2D01G428600 chr2A 88.366 361 30 3 3264 3612 684122552 684122912 1.470000e-114 424.0
4 TraesCS2D01G428600 chr2B 89.584 1805 120 34 1506 3271 646018261 646020036 0.000000e+00 2230.0
5 TraesCS2D01G428600 chr2B 84.899 1331 97 48 161 1470 646017011 646018258 0.000000e+00 1249.0
6 TraesCS2D01G428600 chr2B 84.737 380 29 6 3260 3612 646020101 646020478 1.960000e-93 353.0
7 TraesCS2D01G428600 chr2B 91.071 56 5 0 4271 4326 646020477 646020532 4.740000e-10 76.8
8 TraesCS2D01G428600 chr7A 90.081 988 82 8 1906 2889 503327606 503326631 0.000000e+00 1267.0
9 TraesCS2D01G428600 chr5A 89.474 988 88 8 1906 2889 302988101 302989076 0.000000e+00 1234.0
10 TraesCS2D01G428600 chr5A 89.000 400 40 3 3872 4268 128443671 128444069 3.970000e-135 492.0
11 TraesCS2D01G428600 chr5A 92.245 245 19 0 3619 3863 128443276 128443520 9.110000e-92 348.0
12 TraesCS2D01G428600 chr7D 98.054 668 11 2 3605 4271 133236402 133235736 0.000000e+00 1160.0
13 TraesCS2D01G428600 chr7D 97.269 659 10 2 3614 4271 205555117 205554466 0.000000e+00 1110.0
14 TraesCS2D01G428600 chr7D 86.713 143 15 4 2 142 364107647 364107787 5.920000e-34 156.0
15 TraesCS2D01G428600 chr1D 98.333 660 10 1 3613 4271 302867744 302868403 0.000000e+00 1157.0
16 TraesCS2D01G428600 chr4A 90.953 829 61 4 2061 2889 142902570 142903384 0.000000e+00 1103.0
17 TraesCS2D01G428600 chr5B 94.286 665 29 6 3610 4268 170598835 170598174 0.000000e+00 1009.0
18 TraesCS2D01G428600 chr5B 89.901 406 35 4 3872 4274 597202139 597201737 6.560000e-143 518.0
19 TraesCS2D01G428600 chr5B 91.221 262 23 0 3608 3869 597202546 597202285 1.510000e-94 357.0
20 TraesCS2D01G428600 chr4B 92.593 648 43 3 3609 4251 601865577 601866224 0.000000e+00 926.0
21 TraesCS2D01G428600 chr7B 88.750 400 41 4 3872 4268 539280558 539280160 1.850000e-133 486.0
22 TraesCS2D01G428600 chr7B 92.386 197 13 1 3612 3806 539280946 539280750 3.370000e-71 279.0
23 TraesCS2D01G428600 chr7B 85.135 148 16 5 3 147 372819066 372819210 3.560000e-31 147.0
24 TraesCS2D01G428600 chr6D 92.734 289 18 2 3983 4268 101644637 101644925 8.850000e-112 414.0
25 TraesCS2D01G428600 chr6A 90.323 248 24 0 3614 3861 534713290 534713537 4.270000e-85 326.0
26 TraesCS2D01G428600 chr6A 88.732 142 13 3 2 143 24230200 24230338 2.120000e-38 171.0
27 TraesCS2D01G428600 chr6A 87.218 133 15 2 10 142 25585508 25585638 2.760000e-32 150.0
28 TraesCS2D01G428600 chr3D 88.636 132 14 1 10 141 552558312 552558442 4.580000e-35 159.0
29 TraesCS2D01G428600 chr3D 86.525 141 18 1 2 142 454678236 454678097 2.130000e-33 154.0
30 TraesCS2D01G428600 chr5D 87.313 134 14 3 10 143 448145246 448145116 2.760000e-32 150.0
31 TraesCS2D01G428600 chr4D 85.816 141 17 3 10 150 108214071 108213934 3.560000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G428600 chr2D 540636463 540640885 4422 False 8168.0 8168 100.00000 1 4423 1 chr2D.!!$F1 4422
1 TraesCS2D01G428600 chr2A 684119788 684122912 3124 False 1878.0 3332 88.58800 505 3612 2 chr2A.!!$F1 3107
2 TraesCS2D01G428600 chr2B 646017011 646020532 3521 False 977.2 2230 87.57275 161 4326 4 chr2B.!!$F1 4165
3 TraesCS2D01G428600 chr7A 503326631 503327606 975 True 1267.0 1267 90.08100 1906 2889 1 chr7A.!!$R1 983
4 TraesCS2D01G428600 chr5A 302988101 302989076 975 False 1234.0 1234 89.47400 1906 2889 1 chr5A.!!$F1 983
5 TraesCS2D01G428600 chr5A 128443276 128444069 793 False 420.0 492 90.62250 3619 4268 2 chr5A.!!$F2 649
6 TraesCS2D01G428600 chr7D 133235736 133236402 666 True 1160.0 1160 98.05400 3605 4271 1 chr7D.!!$R1 666
7 TraesCS2D01G428600 chr7D 205554466 205555117 651 True 1110.0 1110 97.26900 3614 4271 1 chr7D.!!$R2 657
8 TraesCS2D01G428600 chr1D 302867744 302868403 659 False 1157.0 1157 98.33300 3613 4271 1 chr1D.!!$F1 658
9 TraesCS2D01G428600 chr4A 142902570 142903384 814 False 1103.0 1103 90.95300 2061 2889 1 chr4A.!!$F1 828
10 TraesCS2D01G428600 chr5B 170598174 170598835 661 True 1009.0 1009 94.28600 3610 4268 1 chr5B.!!$R1 658
11 TraesCS2D01G428600 chr5B 597201737 597202546 809 True 437.5 518 90.56100 3608 4274 2 chr5B.!!$R2 666
12 TraesCS2D01G428600 chr4B 601865577 601866224 647 False 926.0 926 92.59300 3609 4251 1 chr4B.!!$F1 642
13 TraesCS2D01G428600 chr7B 539280160 539280946 786 True 382.5 486 90.56800 3612 4268 2 chr7B.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.034574 TTGGCCGTGTGCATCCTAAT 60.035 50.0 0.00 0.00 43.89 1.73 F
989 1036 0.108138 CAGGACAAGGTCGACCCATC 60.108 60.0 30.82 23.39 36.42 3.51 F
2158 2234 0.179134 CGTAGCTTCCGAGACTTGGG 60.179 60.0 9.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1094 0.037882 CAAAGCACGAGCAGAGGAGA 60.038 55.000 7.77 0.0 45.49 3.71 R
2930 3036 0.106708 AGTGCCAAGTGCGAGAAAGA 59.893 50.000 0.00 0.0 45.60 2.52 R
3470 3676 1.063006 CATTCCGCCGTTCAGCATG 59.937 57.895 0.00 0.0 37.54 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.621629 TTTCCTTTATTGTTGTCAGACTTTAGA 57.378 29.630 1.31 0.00 0.00 2.10
31 32 9.793259 TTCCTTTATTGTTGTCAGACTTTAGAT 57.207 29.630 1.31 0.00 0.00 1.98
32 33 9.219603 TCCTTTATTGTTGTCAGACTTTAGATG 57.780 33.333 1.31 0.00 0.00 2.90
33 34 9.003658 CCTTTATTGTTGTCAGACTTTAGATGT 57.996 33.333 1.31 0.00 0.00 3.06
37 38 6.618287 TGTTGTCAGACTTTAGATGTTTGG 57.382 37.500 1.31 0.00 0.00 3.28
38 39 5.008613 TGTTGTCAGACTTTAGATGTTTGGC 59.991 40.000 1.31 0.00 0.00 4.52
39 40 4.072131 TGTCAGACTTTAGATGTTTGGCC 58.928 43.478 0.00 0.00 0.00 5.36
40 41 3.125316 GTCAGACTTTAGATGTTTGGCCG 59.875 47.826 0.00 0.00 0.00 6.13
41 42 3.074412 CAGACTTTAGATGTTTGGCCGT 58.926 45.455 0.00 0.00 0.00 5.68
42 43 3.074412 AGACTTTAGATGTTTGGCCGTG 58.926 45.455 0.00 0.00 0.00 4.94
43 44 2.812011 GACTTTAGATGTTTGGCCGTGT 59.188 45.455 0.00 0.00 0.00 4.49
44 45 2.552315 ACTTTAGATGTTTGGCCGTGTG 59.448 45.455 0.00 0.00 0.00 3.82
45 46 0.878416 TTAGATGTTTGGCCGTGTGC 59.122 50.000 0.00 0.00 40.16 4.57
46 47 0.250510 TAGATGTTTGGCCGTGTGCA 60.251 50.000 0.00 0.00 43.89 4.57
47 48 0.895100 AGATGTTTGGCCGTGTGCAT 60.895 50.000 0.00 0.00 43.89 3.96
48 49 0.456653 GATGTTTGGCCGTGTGCATC 60.457 55.000 0.00 4.12 43.89 3.91
49 50 1.876497 ATGTTTGGCCGTGTGCATCC 61.876 55.000 0.00 0.00 43.89 3.51
50 51 2.115052 TTTGGCCGTGTGCATCCT 59.885 55.556 0.00 0.00 43.89 3.24
51 52 0.958382 GTTTGGCCGTGTGCATCCTA 60.958 55.000 0.00 0.00 43.89 2.94
52 53 0.250945 TTTGGCCGTGTGCATCCTAA 60.251 50.000 0.00 0.00 43.89 2.69
53 54 0.034574 TTGGCCGTGTGCATCCTAAT 60.035 50.000 0.00 0.00 43.89 1.73
54 55 0.034574 TGGCCGTGTGCATCCTAATT 60.035 50.000 0.00 0.00 43.89 1.40
55 56 1.210722 TGGCCGTGTGCATCCTAATTA 59.789 47.619 0.00 0.00 43.89 1.40
56 57 2.158682 TGGCCGTGTGCATCCTAATTAT 60.159 45.455 0.00 0.00 43.89 1.28
57 58 3.071747 TGGCCGTGTGCATCCTAATTATA 59.928 43.478 0.00 0.00 43.89 0.98
58 59 3.435671 GGCCGTGTGCATCCTAATTATAC 59.564 47.826 0.00 0.00 43.89 1.47
59 60 4.062293 GCCGTGTGCATCCTAATTATACA 58.938 43.478 0.00 0.00 40.77 2.29
60 61 4.513692 GCCGTGTGCATCCTAATTATACAA 59.486 41.667 0.00 0.00 40.77 2.41
61 62 5.008217 GCCGTGTGCATCCTAATTATACAAA 59.992 40.000 0.00 0.00 40.77 2.83
62 63 6.658831 CCGTGTGCATCCTAATTATACAAAG 58.341 40.000 0.00 0.00 0.00 2.77
63 64 6.293407 CCGTGTGCATCCTAATTATACAAAGG 60.293 42.308 0.00 0.00 0.00 3.11
64 65 6.438763 GTGTGCATCCTAATTATACAAAGGC 58.561 40.000 0.00 0.00 0.00 4.35
65 66 5.534654 TGTGCATCCTAATTATACAAAGGCC 59.465 40.000 0.00 0.00 0.00 5.19
66 67 4.759693 TGCATCCTAATTATACAAAGGCCG 59.240 41.667 0.00 0.00 0.00 6.13
67 68 4.156008 GCATCCTAATTATACAAAGGCCGG 59.844 45.833 0.00 0.00 0.00 6.13
68 69 4.360951 TCCTAATTATACAAAGGCCGGG 57.639 45.455 2.18 0.00 0.00 5.73
69 70 3.717913 TCCTAATTATACAAAGGCCGGGT 59.282 43.478 2.18 0.00 0.00 5.28
70 71 3.818773 CCTAATTATACAAAGGCCGGGTG 59.181 47.826 2.18 0.00 0.00 4.61
71 72 3.375647 AATTATACAAAGGCCGGGTGT 57.624 42.857 2.18 12.69 0.00 4.16
72 73 2.883122 TTATACAAAGGCCGGGTGTT 57.117 45.000 13.22 5.70 0.00 3.32
73 74 3.996921 TTATACAAAGGCCGGGTGTTA 57.003 42.857 13.22 4.93 0.00 2.41
74 75 2.118313 ATACAAAGGCCGGGTGTTAC 57.882 50.000 13.22 0.00 0.00 2.50
75 76 1.058284 TACAAAGGCCGGGTGTTACT 58.942 50.000 13.22 0.00 0.00 2.24
76 77 1.058284 ACAAAGGCCGGGTGTTACTA 58.942 50.000 2.18 0.00 0.00 1.82
77 78 1.420891 ACAAAGGCCGGGTGTTACTAA 59.579 47.619 2.18 0.00 0.00 2.24
78 79 2.040679 ACAAAGGCCGGGTGTTACTAAT 59.959 45.455 2.18 0.00 0.00 1.73
79 80 3.263937 ACAAAGGCCGGGTGTTACTAATA 59.736 43.478 2.18 0.00 0.00 0.98
80 81 4.263418 ACAAAGGCCGGGTGTTACTAATAA 60.263 41.667 2.18 0.00 0.00 1.40
81 82 4.783560 AAGGCCGGGTGTTACTAATAAT 57.216 40.909 2.18 0.00 0.00 1.28
82 83 4.081322 AGGCCGGGTGTTACTAATAATG 57.919 45.455 2.18 0.00 0.00 1.90
83 84 2.551032 GGCCGGGTGTTACTAATAATGC 59.449 50.000 2.18 0.00 0.00 3.56
84 85 3.473625 GCCGGGTGTTACTAATAATGCT 58.526 45.455 2.18 0.00 0.00 3.79
85 86 3.881089 GCCGGGTGTTACTAATAATGCTT 59.119 43.478 2.18 0.00 0.00 3.91
86 87 4.337274 GCCGGGTGTTACTAATAATGCTTT 59.663 41.667 2.18 0.00 0.00 3.51
87 88 5.732247 GCCGGGTGTTACTAATAATGCTTTG 60.732 44.000 2.18 0.00 0.00 2.77
88 89 5.355910 CCGGGTGTTACTAATAATGCTTTGT 59.644 40.000 0.00 0.00 0.00 2.83
89 90 6.539464 CCGGGTGTTACTAATAATGCTTTGTA 59.461 38.462 0.00 0.00 0.00 2.41
90 91 7.227910 CCGGGTGTTACTAATAATGCTTTGTAT 59.772 37.037 0.00 0.00 0.00 2.29
91 92 8.280497 CGGGTGTTACTAATAATGCTTTGTATC 58.720 37.037 0.00 0.00 0.00 2.24
92 93 8.565416 GGGTGTTACTAATAATGCTTTGTATCC 58.435 37.037 0.00 0.00 0.00 2.59
93 94 8.280497 GGTGTTACTAATAATGCTTTGTATCCG 58.720 37.037 0.00 0.00 0.00 4.18
94 95 8.823818 GTGTTACTAATAATGCTTTGTATCCGT 58.176 33.333 0.00 0.00 0.00 4.69
95 96 9.386010 TGTTACTAATAATGCTTTGTATCCGTT 57.614 29.630 0.00 0.00 0.00 4.44
98 99 8.500753 ACTAATAATGCTTTGTATCCGTTTGA 57.499 30.769 0.00 0.00 0.00 2.69
99 100 9.120538 ACTAATAATGCTTTGTATCCGTTTGAT 57.879 29.630 0.00 0.00 37.49 2.57
100 101 9.385902 CTAATAATGCTTTGTATCCGTTTGATG 57.614 33.333 0.00 0.00 34.76 3.07
101 102 3.485947 TGCTTTGTATCCGTTTGATGC 57.514 42.857 0.00 0.00 36.68 3.91
102 103 3.081061 TGCTTTGTATCCGTTTGATGCT 58.919 40.909 0.00 0.00 37.04 3.79
103 104 4.257731 TGCTTTGTATCCGTTTGATGCTA 58.742 39.130 0.00 0.00 37.04 3.49
104 105 4.094294 TGCTTTGTATCCGTTTGATGCTAC 59.906 41.667 0.00 0.00 37.04 3.58
105 106 4.094294 GCTTTGTATCCGTTTGATGCTACA 59.906 41.667 0.00 0.00 37.04 2.74
106 107 5.220854 GCTTTGTATCCGTTTGATGCTACAT 60.221 40.000 0.00 0.00 37.04 2.29
107 108 6.677920 GCTTTGTATCCGTTTGATGCTACATT 60.678 38.462 0.00 0.00 37.04 2.71
108 109 6.751514 TTGTATCCGTTTGATGCTACATTT 57.248 33.333 0.00 0.00 37.04 2.32
109 110 6.751514 TGTATCCGTTTGATGCTACATTTT 57.248 33.333 0.00 0.00 37.04 1.82
110 111 6.550843 TGTATCCGTTTGATGCTACATTTTG 58.449 36.000 0.00 0.00 37.04 2.44
111 112 5.895636 ATCCGTTTGATGCTACATTTTGA 57.104 34.783 0.00 0.00 30.54 2.69
112 113 5.295431 TCCGTTTGATGCTACATTTTGAG 57.705 39.130 0.00 0.00 0.00 3.02
113 114 5.000591 TCCGTTTGATGCTACATTTTGAGA 58.999 37.500 0.00 0.00 0.00 3.27
114 115 5.647658 TCCGTTTGATGCTACATTTTGAGAT 59.352 36.000 0.00 0.00 0.00 2.75
115 116 6.821160 TCCGTTTGATGCTACATTTTGAGATA 59.179 34.615 0.00 0.00 0.00 1.98
116 117 7.335673 TCCGTTTGATGCTACATTTTGAGATAA 59.664 33.333 0.00 0.00 0.00 1.75
117 118 8.131100 CCGTTTGATGCTACATTTTGAGATAAT 58.869 33.333 0.00 0.00 0.00 1.28
125 126 9.781834 TGCTACATTTTGAGATAATAAAAACCG 57.218 29.630 0.00 0.00 30.50 4.44
126 127 9.783256 GCTACATTTTGAGATAATAAAAACCGT 57.217 29.630 0.00 0.00 30.50 4.83
129 130 9.020731 ACATTTTGAGATAATAAAAACCGTCCT 57.979 29.630 0.00 0.00 30.50 3.85
130 131 9.855021 CATTTTGAGATAATAAAAACCGTCCTT 57.145 29.630 0.00 0.00 30.50 3.36
135 136 9.893634 TGAGATAATAAAAACCGTCCTTTATCA 57.106 29.630 0.00 0.00 30.62 2.15
158 159 2.810439 AAATAAAACTTGGCGCTGCA 57.190 40.000 7.64 0.00 0.00 4.41
159 160 3.317603 AAATAAAACTTGGCGCTGCAT 57.682 38.095 7.64 0.00 0.00 3.96
187 188 2.438434 GCCCCTGCGTGCTACAAT 60.438 61.111 0.00 0.00 0.00 2.71
193 194 2.318578 CCTGCGTGCTACAATTTGTTG 58.681 47.619 7.45 6.98 0.00 3.33
194 195 2.287547 CCTGCGTGCTACAATTTGTTGT 60.288 45.455 7.45 0.00 38.85 3.32
232 233 7.041644 CCAATGAAAAATATGCACATGGATTCC 60.042 37.037 0.00 0.00 0.00 3.01
233 234 6.541934 TGAAAAATATGCACATGGATTCCA 57.458 33.333 8.08 8.08 38.19 3.53
304 320 7.560700 TGTAATTGTTGTCATATATTCGTCGC 58.439 34.615 0.00 0.00 0.00 5.19
305 321 6.597262 AATTGTTGTCATATATTCGTCGCA 57.403 33.333 0.00 0.00 0.00 5.10
306 322 6.597262 ATTGTTGTCATATATTCGTCGCAA 57.403 33.333 0.00 0.00 0.00 4.85
307 323 5.635549 TGTTGTCATATATTCGTCGCAAG 57.364 39.130 0.00 0.00 0.00 4.01
442 462 0.179292 CGGCGTCGAAACAGTTTACG 60.179 55.000 1.44 14.48 39.00 3.18
444 464 1.258720 GGCGTCGAAACAGTTTACGTT 59.741 47.619 18.23 0.00 36.03 3.99
445 465 2.543646 GCGTCGAAACAGTTTACGTTC 58.456 47.619 18.23 11.34 36.03 3.95
446 466 2.791485 CGTCGAAACAGTTTACGTTCG 58.209 47.619 11.63 13.72 0.00 3.95
447 467 2.463653 CGTCGAAACAGTTTACGTTCGA 59.536 45.455 11.63 7.78 0.00 3.71
452 475 4.663091 CGAAACAGTTTACGTTCGAAAAGG 59.337 41.667 0.00 0.00 0.00 3.11
478 501 5.458041 TGCCTTTCCAGAAATTTCTCTTG 57.542 39.130 17.91 8.20 34.74 3.02
484 510 4.389374 TCCAGAAATTTCTCTTGAGCGTT 58.611 39.130 17.91 0.00 34.74 4.84
498 524 2.254350 CGTTCTGACGGACGCAGA 59.746 61.111 12.42 12.42 45.32 4.26
499 525 1.371267 CGTTCTGACGGACGCAGAA 60.371 57.895 19.70 19.70 46.78 3.02
501 527 3.418675 TTCTGACGGACGCAGAATC 57.581 52.632 19.70 1.25 44.81 2.52
502 528 0.456142 TTCTGACGGACGCAGAATCG 60.456 55.000 19.70 0.00 44.81 3.34
734 778 2.678934 CCCTTCCCGGTCTCGACA 60.679 66.667 0.00 0.00 39.00 4.35
755 800 0.690192 TCAAACATTCCTCCGCTCCA 59.310 50.000 0.00 0.00 0.00 3.86
758 803 0.539051 AACATTCCTCCGCTCCAGAG 59.461 55.000 0.00 0.00 0.00 3.35
805 850 1.652012 CAAAAAGTGAAGCGCCCGA 59.348 52.632 2.29 0.00 0.00 5.14
807 852 2.130073 AAAAAGTGAAGCGCCCGAGC 62.130 55.000 2.29 0.00 37.41 5.03
858 903 0.446616 GCTCCCGCTAAAACCTTTCG 59.553 55.000 0.00 0.00 0.00 3.46
864 909 1.239296 GCTAAAACCTTTCGCCCGGT 61.239 55.000 0.00 0.00 34.27 5.28
950 996 2.383527 CGAACGAGCCTGCCTGAAC 61.384 63.158 0.00 0.00 0.00 3.18
989 1036 0.108138 CAGGACAAGGTCGACCCATC 60.108 60.000 30.82 23.39 36.42 3.51
990 1037 0.252284 AGGACAAGGTCGACCCATCT 60.252 55.000 30.82 17.55 36.42 2.90
991 1038 0.108138 GGACAAGGTCGACCCATCTG 60.108 60.000 30.82 22.97 36.42 2.90
992 1039 0.741221 GACAAGGTCGACCCATCTGC 60.741 60.000 30.82 12.05 36.42 4.26
993 1040 1.811266 CAAGGTCGACCCATCTGCG 60.811 63.158 30.82 7.92 36.42 5.18
994 1041 3.665675 AAGGTCGACCCATCTGCGC 62.666 63.158 30.82 0.00 36.42 6.09
1076 1123 4.389576 GTGCTTTGCTCGGGTGCG 62.390 66.667 0.00 0.00 35.36 5.34
1164 1211 3.435186 GAGCTGCCTGCCGGTTTC 61.435 66.667 1.90 0.00 44.23 2.78
1193 1244 7.489160 AGCACAAGATATGAACTGTAATCGTA 58.511 34.615 0.00 0.00 0.00 3.43
1242 1295 6.000219 AGAAAGAATTGACAGCTGAGCTTAA 59.000 36.000 23.35 7.93 36.40 1.85
1491 1548 5.694816 CAAGTAGCTAGGTAGTGATCGATG 58.305 45.833 0.54 0.48 0.00 3.84
1499 1556 3.055819 AGGTAGTGATCGATGTTGCAGTT 60.056 43.478 0.54 0.00 0.00 3.16
1527 1584 5.022122 TCACTCCCAAATTCATATGGCAAA 58.978 37.500 2.13 0.00 35.28 3.68
1588 1645 2.731572 CTGGGCAGTGATTTGGAAGAT 58.268 47.619 0.00 0.00 0.00 2.40
1612 1669 7.817910 TCAGGTTAAGAAAGGGGAGTTATTA 57.182 36.000 0.00 0.00 0.00 0.98
1624 1681 0.472898 AGTTATTAGAAGCCCGGGCC 59.527 55.000 41.72 27.43 43.17 5.80
1669 1726 0.318762 AGCTCGGTCAGAAGTTGGAC 59.681 55.000 0.00 0.00 0.00 4.02
1705 1763 9.929180 ACATACATGCTGTATAATTGTACTAGG 57.071 33.333 12.82 4.97 41.28 3.02
1713 1778 7.937394 GCTGTATAATTGTACTAGGTTTGGGAT 59.063 37.037 12.82 0.00 0.00 3.85
1726 1791 2.870411 GTTTGGGATATGTCGTAGTGGC 59.130 50.000 0.00 0.00 0.00 5.01
1809 1881 3.693578 GGAAGAAAATTGAGGAGCTGGAG 59.306 47.826 0.00 0.00 0.00 3.86
1819 1891 1.209990 AGGAGCTGGAGCAAGATCTTG 59.790 52.381 27.82 27.82 45.16 3.02
1842 1914 5.126222 TGAGCATTCAAAAGTTGGTACACAA 59.874 36.000 0.00 0.00 39.29 3.33
1844 1916 4.744631 GCATTCAAAAGTTGGTACACAAGG 59.255 41.667 0.00 0.00 40.38 3.61
1848 1920 5.502079 TCAAAAGTTGGTACACAAGGAAGA 58.498 37.500 0.00 0.00 40.38 2.87
1849 1921 6.126409 TCAAAAGTTGGTACACAAGGAAGAT 58.874 36.000 0.00 0.00 40.38 2.40
1850 1922 6.039270 TCAAAAGTTGGTACACAAGGAAGATG 59.961 38.462 0.00 0.00 40.38 2.90
1851 1923 4.706842 AGTTGGTACACAAGGAAGATGT 57.293 40.909 0.00 0.00 40.38 3.06
1853 1925 5.794894 AGTTGGTACACAAGGAAGATGTAG 58.205 41.667 0.00 0.00 40.38 2.74
1855 1927 6.042781 AGTTGGTACACAAGGAAGATGTAGAA 59.957 38.462 0.00 0.00 40.38 2.10
1856 1928 5.790593 TGGTACACAAGGAAGATGTAGAAC 58.209 41.667 0.00 0.00 29.67 3.01
1857 1929 5.542635 TGGTACACAAGGAAGATGTAGAACT 59.457 40.000 0.00 0.00 29.67 3.01
1877 1949 7.038659 AGAACTGTAATTGAGAAGAATCCTCG 58.961 38.462 0.00 0.00 33.51 4.63
1879 1951 6.568869 ACTGTAATTGAGAAGAATCCTCGAG 58.431 40.000 5.13 5.13 33.51 4.04
1889 1961 4.329462 AGAATCCTCGAGGTGCTAATTC 57.671 45.455 30.17 27.06 36.34 2.17
1891 1963 3.742433 ATCCTCGAGGTGCTAATTCTG 57.258 47.619 30.17 0.80 36.34 3.02
1897 1969 2.744202 CGAGGTGCTAATTCTGTGCTTT 59.256 45.455 0.00 0.00 0.00 3.51
1899 1971 4.572389 CGAGGTGCTAATTCTGTGCTTTAT 59.428 41.667 0.00 0.00 0.00 1.40
1900 1972 5.503031 CGAGGTGCTAATTCTGTGCTTTATG 60.503 44.000 0.00 0.00 0.00 1.90
1901 1973 5.256474 AGGTGCTAATTCTGTGCTTTATGT 58.744 37.500 0.00 0.00 0.00 2.29
1902 1974 5.124457 AGGTGCTAATTCTGTGCTTTATGTG 59.876 40.000 0.00 0.00 0.00 3.21
1903 1975 5.123820 GGTGCTAATTCTGTGCTTTATGTGA 59.876 40.000 0.00 0.00 0.00 3.58
1904 1976 6.024049 GTGCTAATTCTGTGCTTTATGTGAC 58.976 40.000 0.00 0.00 0.00 3.67
1918 1990 6.618287 TTTATGTGACTGTTCAGGACAAAG 57.382 37.500 4.82 0.00 37.93 2.77
1920 1992 3.531538 TGTGACTGTTCAGGACAAAGTC 58.468 45.455 4.82 0.00 37.93 3.01
1937 2009 2.748605 AGTCTCTGAAGTGCAAAGACG 58.251 47.619 0.00 0.00 0.00 4.18
1954 2026 2.227388 AGACGAGCAAAATTGAAGGCTG 59.773 45.455 0.00 0.00 36.59 4.85
1981 2053 4.462483 AGTTGGCAAATGTATGGGTAACTG 59.538 41.667 0.00 0.00 0.00 3.16
2003 2075 7.843490 CTGGAAGTCCGATATTACTTTTTGA 57.157 36.000 0.00 0.00 36.10 2.69
2004 2076 7.843490 TGGAAGTCCGATATTACTTTTTGAG 57.157 36.000 0.00 0.00 36.10 3.02
2005 2077 6.821665 TGGAAGTCCGATATTACTTTTTGAGG 59.178 38.462 0.00 0.00 36.10 3.86
2007 2079 6.555463 AGTCCGATATTACTTTTTGAGGGA 57.445 37.500 0.00 0.00 0.00 4.20
2008 2080 6.954232 AGTCCGATATTACTTTTTGAGGGAA 58.046 36.000 0.00 0.00 0.00 3.97
2041 2117 4.207891 ACTTAACGCAGAGATGGTTCAT 57.792 40.909 0.00 0.00 0.00 2.57
2084 2160 2.276201 CTTCCGTATTGGTTCGCATCA 58.724 47.619 0.00 0.00 39.52 3.07
2099 2175 1.267732 GCATCACGCTCTGTACATTGC 60.268 52.381 0.00 2.97 37.77 3.56
2114 2190 4.518278 ACATTGCCAGGTATATGTGGAA 57.482 40.909 7.37 0.00 35.67 3.53
2139 2215 3.350219 TCCAGTGGTATGGAGCTTTTC 57.650 47.619 9.54 0.00 44.56 2.29
2156 2232 2.631418 TTCGTAGCTTCCGAGACTTG 57.369 50.000 8.00 0.00 35.49 3.16
2158 2234 0.179134 CGTAGCTTCCGAGACTTGGG 60.179 60.000 9.00 0.00 0.00 4.12
2173 2249 6.428771 CGAGACTTGGGTTTAGGTTTATTTGA 59.571 38.462 0.00 0.00 0.00 2.69
2332 2417 0.387565 AATGCAACCACCACCGTTTC 59.612 50.000 0.00 0.00 0.00 2.78
2341 2426 1.081509 CCACCGTTTCACAATGCCG 60.082 57.895 0.00 0.00 0.00 5.69
2383 2468 2.268762 TGGCACATGCACAAAGACTA 57.731 45.000 6.15 0.00 44.36 2.59
2462 2547 1.873591 CCCTCACCTCTTTGTGAAACG 59.126 52.381 0.00 0.00 44.19 3.60
2583 2680 0.179150 CGTCACAGCCTACAGAGCTC 60.179 60.000 5.27 5.27 38.95 4.09
2770 2867 2.393271 AGGAATGCAGGAAGTTCTCG 57.607 50.000 2.25 0.00 0.00 4.04
2774 2871 1.561643 ATGCAGGAAGTTCTCGGAGA 58.438 50.000 2.97 2.97 0.00 3.71
2917 3023 3.545703 GGTGCAGCCTTCAGTAACATAT 58.454 45.455 4.03 0.00 0.00 1.78
2920 3026 5.007724 GGTGCAGCCTTCAGTAACATATTAC 59.992 44.000 4.03 0.00 41.00 1.89
2921 3027 4.808895 TGCAGCCTTCAGTAACATATTACG 59.191 41.667 0.00 0.00 44.69 3.18
2922 3028 4.809426 GCAGCCTTCAGTAACATATTACGT 59.191 41.667 0.00 0.00 44.69 3.57
2923 3029 5.981315 GCAGCCTTCAGTAACATATTACGTA 59.019 40.000 0.00 0.00 44.69 3.57
2924 3030 6.144080 GCAGCCTTCAGTAACATATTACGTAG 59.856 42.308 0.00 0.00 44.69 3.51
2925 3031 6.144080 CAGCCTTCAGTAACATATTACGTAGC 59.856 42.308 0.00 0.00 44.69 3.58
2932 3038 9.865321 TCAGTAACATATTACGTAGCTTTTTCT 57.135 29.630 0.00 0.00 44.69 2.52
2939 3045 3.790212 ACGTAGCTTTTTCTTTCTCGC 57.210 42.857 0.00 0.00 0.00 5.03
2963 3069 2.677971 GCACTGGCCGTATACACTG 58.322 57.895 3.32 0.00 0.00 3.66
2964 3070 0.810031 GCACTGGCCGTATACACTGG 60.810 60.000 3.32 0.00 0.00 4.00
2966 3072 1.227556 CTGGCCGTATACACTGGGC 60.228 63.158 12.97 12.97 44.82 5.36
2968 3074 2.497770 GCCGTATACACTGGGCGT 59.502 61.111 3.32 0.00 35.59 5.68
3029 3136 0.906756 TCAGTGGCTTCCTGGAGGAG 60.907 60.000 10.38 0.03 46.36 3.69
3057 3164 0.957888 GCTGGACCCACTTTCAGCTC 60.958 60.000 6.88 0.00 46.29 4.09
3125 3232 6.174049 TCCATAACATCGTTGGTATCACAAA 58.826 36.000 0.94 0.00 33.32 2.83
3172 3284 5.865085 TGCTTACTGAACTCACACCTATTT 58.135 37.500 0.00 0.00 0.00 1.40
3181 3293 3.244078 ACTCACACCTATTTGCTTCGTCA 60.244 43.478 0.00 0.00 0.00 4.35
3222 3334 2.387445 GCGCTGCCGATGTTGTACA 61.387 57.895 0.00 0.00 36.29 2.90
3233 3345 5.680408 GCCGATGTTGTACACCTACAAGATA 60.680 44.000 3.12 0.00 43.50 1.98
3245 3357 5.009710 CACCTACAAGATATTCTCGGCTACA 59.990 44.000 0.00 0.00 0.00 2.74
3277 3465 6.980051 AACTTATCAAAGGATCCGTGTTAC 57.020 37.500 15.62 0.00 37.01 2.50
3286 3474 2.347452 GGATCCGTGTTACACATTGTCG 59.653 50.000 16.09 0.04 33.40 4.35
3292 3480 4.260456 CCGTGTTACACATTGTCGACTTTT 60.260 41.667 17.92 0.00 33.40 2.27
3312 3501 6.715264 ACTTTTCTTTCCTGAATAATCCACGT 59.285 34.615 0.00 0.00 0.00 4.49
3428 3626 2.188161 GGTCGAGGAGTAGAGGGCG 61.188 68.421 0.00 0.00 0.00 6.13
3455 3653 1.927895 CTGTTACCCACGAGCTGATC 58.072 55.000 0.00 0.00 0.00 2.92
3470 3676 1.348008 TGATCCTCCCCTGGTGATGC 61.348 60.000 0.00 0.00 0.00 3.91
3491 3707 1.017177 TGCTGAACGGCGGAATGTAC 61.017 55.000 13.24 0.00 34.52 2.90
3500 3716 2.000447 GGCGGAATGTACAACTCTGAC 59.000 52.381 17.26 12.51 0.00 3.51
3558 3774 2.062070 GCACTAGGCAGGGGATAGG 58.938 63.158 0.00 0.00 43.97 2.57
3565 3781 4.548663 ACTAGGCAGGGGATAGGTATGATA 59.451 45.833 0.00 0.00 0.00 2.15
3573 3789 3.258622 GGGATAGGTATGATATAGCGGCC 59.741 52.174 0.00 0.00 0.00 6.13
3747 3963 5.365619 CCAGCCTAATACAAAACCGATACT 58.634 41.667 0.00 0.00 0.00 2.12
4050 4417 0.892358 ACTCGTGCTCTTACCGTCCA 60.892 55.000 0.00 0.00 0.00 4.02
4292 4662 4.644103 AAGGTTCATGCTGTTGATATGC 57.356 40.909 0.00 0.00 0.00 3.14
4293 4663 2.615447 AGGTTCATGCTGTTGATATGCG 59.385 45.455 0.00 0.00 0.00 4.73
4294 4664 2.287188 GGTTCATGCTGTTGATATGCGG 60.287 50.000 0.00 0.00 0.00 5.69
4296 4666 3.467374 TCATGCTGTTGATATGCGGTA 57.533 42.857 0.00 0.00 0.00 4.02
4326 4696 9.706846 GTACACGGTGTATAAAATGGAAATTAC 57.293 33.333 22.58 4.34 35.05 1.89
4327 4697 8.570068 ACACGGTGTATAAAATGGAAATTACT 57.430 30.769 12.96 0.00 0.00 2.24
4328 4698 9.016438 ACACGGTGTATAAAATGGAAATTACTT 57.984 29.630 12.96 0.00 0.00 2.24
4329 4699 9.284594 CACGGTGTATAAAATGGAAATTACTTG 57.715 33.333 0.00 0.00 0.00 3.16
4330 4700 9.016438 ACGGTGTATAAAATGGAAATTACTTGT 57.984 29.630 0.00 0.00 0.00 3.16
4331 4701 9.284594 CGGTGTATAAAATGGAAATTACTTGTG 57.715 33.333 0.00 0.00 0.00 3.33
4335 4705 9.581099 GTATAAAATGGAAATTACTTGTGTGGG 57.419 33.333 0.00 0.00 0.00 4.61
4336 4706 5.482163 AAATGGAAATTACTTGTGTGGGG 57.518 39.130 0.00 0.00 0.00 4.96
4337 4707 3.603965 TGGAAATTACTTGTGTGGGGT 57.396 42.857 0.00 0.00 0.00 4.95
4338 4708 4.726035 TGGAAATTACTTGTGTGGGGTA 57.274 40.909 0.00 0.00 0.00 3.69
4339 4709 5.063017 TGGAAATTACTTGTGTGGGGTAA 57.937 39.130 0.00 0.00 0.00 2.85
4340 4710 4.828387 TGGAAATTACTTGTGTGGGGTAAC 59.172 41.667 0.00 0.00 0.00 2.50
4341 4711 4.083164 GGAAATTACTTGTGTGGGGTAACG 60.083 45.833 0.00 0.00 37.60 3.18
4342 4712 4.354893 AATTACTTGTGTGGGGTAACGA 57.645 40.909 0.00 0.00 37.60 3.85
4343 4713 3.389925 TTACTTGTGTGGGGTAACGAG 57.610 47.619 0.00 0.00 34.49 4.18
4344 4714 1.125633 ACTTGTGTGGGGTAACGAGT 58.874 50.000 0.00 0.00 36.41 4.18
4345 4715 1.487558 ACTTGTGTGGGGTAACGAGTT 59.512 47.619 0.00 0.00 37.70 3.01
4346 4716 1.871039 CTTGTGTGGGGTAACGAGTTG 59.129 52.381 0.00 0.00 37.60 3.16
4347 4717 1.121378 TGTGTGGGGTAACGAGTTGA 58.879 50.000 0.00 0.00 37.60 3.18
4348 4718 1.695242 TGTGTGGGGTAACGAGTTGAT 59.305 47.619 0.00 0.00 37.60 2.57
4349 4719 2.289195 TGTGTGGGGTAACGAGTTGATC 60.289 50.000 0.00 0.00 37.60 2.92
4350 4720 1.972075 TGTGGGGTAACGAGTTGATCA 59.028 47.619 0.00 0.00 37.60 2.92
4351 4721 2.569853 TGTGGGGTAACGAGTTGATCAT 59.430 45.455 0.00 0.00 37.60 2.45
4352 4722 3.195661 GTGGGGTAACGAGTTGATCATC 58.804 50.000 0.00 0.00 37.60 2.92
4353 4723 2.835156 TGGGGTAACGAGTTGATCATCA 59.165 45.455 6.55 0.00 37.60 3.07
4354 4724 3.454447 TGGGGTAACGAGTTGATCATCAT 59.546 43.478 6.55 0.00 37.60 2.45
4355 4725 3.809832 GGGGTAACGAGTTGATCATCATG 59.190 47.826 6.55 0.97 37.60 3.07
4356 4726 3.809832 GGGTAACGAGTTGATCATCATGG 59.190 47.826 6.55 0.00 37.60 3.66
4357 4727 4.442893 GGGTAACGAGTTGATCATCATGGA 60.443 45.833 6.55 0.00 37.60 3.41
4358 4728 5.116180 GGTAACGAGTTGATCATCATGGAA 58.884 41.667 6.55 0.00 0.00 3.53
4359 4729 5.584649 GGTAACGAGTTGATCATCATGGAAA 59.415 40.000 6.55 0.00 0.00 3.13
4360 4730 6.260936 GGTAACGAGTTGATCATCATGGAAAT 59.739 38.462 6.55 0.00 0.00 2.17
4361 4731 6.764308 AACGAGTTGATCATCATGGAAATT 57.236 33.333 6.55 0.00 0.00 1.82
4362 4732 7.864108 AACGAGTTGATCATCATGGAAATTA 57.136 32.000 6.55 0.00 0.00 1.40
4363 4733 7.251704 ACGAGTTGATCATCATGGAAATTAC 57.748 36.000 6.55 0.00 0.00 1.89
4364 4734 7.050377 ACGAGTTGATCATCATGGAAATTACT 58.950 34.615 6.55 0.00 0.00 2.24
4365 4735 7.554118 ACGAGTTGATCATCATGGAAATTACTT 59.446 33.333 6.55 0.00 0.00 2.24
4366 4736 7.854422 CGAGTTGATCATCATGGAAATTACTTG 59.146 37.037 6.55 0.00 0.00 3.16
4367 4737 8.585471 AGTTGATCATCATGGAAATTACTTGT 57.415 30.769 6.55 0.00 0.00 3.16
4368 4738 8.464404 AGTTGATCATCATGGAAATTACTTGTG 58.536 33.333 6.55 0.00 0.00 3.33
4369 4739 6.798482 TGATCATCATGGAAATTACTTGTGC 58.202 36.000 0.00 0.00 0.00 4.57
4370 4740 6.377712 TGATCATCATGGAAATTACTTGTGCA 59.622 34.615 0.00 0.00 0.00 4.57
4371 4741 5.953183 TCATCATGGAAATTACTTGTGCAC 58.047 37.500 10.75 10.75 0.00 4.57
4372 4742 5.476254 TCATCATGGAAATTACTTGTGCACA 59.524 36.000 17.42 17.42 0.00 4.57
4373 4743 5.981088 TCATGGAAATTACTTGTGCACAT 57.019 34.783 22.39 9.53 0.00 3.21
4374 4744 5.712004 TCATGGAAATTACTTGTGCACATG 58.288 37.500 26.25 26.25 35.70 3.21
4375 4745 5.476254 TCATGGAAATTACTTGTGCACATGA 59.524 36.000 32.41 20.11 39.61 3.07
4376 4746 5.375417 TGGAAATTACTTGTGCACATGAG 57.625 39.130 32.41 24.33 0.00 2.90
4377 4747 4.168760 GGAAATTACTTGTGCACATGAGC 58.831 43.478 32.41 8.32 0.00 4.26
4378 4748 3.476295 AATTACTTGTGCACATGAGCG 57.524 42.857 32.41 16.42 37.31 5.03
4379 4749 1.877637 TTACTTGTGCACATGAGCGT 58.122 45.000 32.41 20.33 37.31 5.07
4380 4750 1.147473 TACTTGTGCACATGAGCGTG 58.853 50.000 32.41 14.66 40.00 5.34
4381 4751 1.208358 CTTGTGCACATGAGCGTGG 59.792 57.895 24.41 3.66 37.37 4.94
4382 4752 1.509644 CTTGTGCACATGAGCGTGGT 61.510 55.000 24.41 0.00 37.37 4.16
4383 4753 1.100463 TTGTGCACATGAGCGTGGTT 61.100 50.000 22.39 0.00 37.37 3.67
4384 4754 1.207593 GTGCACATGAGCGTGGTTC 59.792 57.895 13.17 0.00 37.37 3.62
4385 4755 1.965930 TGCACATGAGCGTGGTTCC 60.966 57.895 10.61 0.00 37.37 3.62
4386 4756 1.965930 GCACATGAGCGTGGTTCCA 60.966 57.895 0.00 0.00 37.37 3.53
4387 4757 1.868997 CACATGAGCGTGGTTCCAC 59.131 57.895 11.53 11.53 33.05 4.02
4388 4758 1.302511 ACATGAGCGTGGTTCCACC 60.303 57.895 15.20 8.84 39.22 4.61
4389 4759 2.047274 ATGAGCGTGGTTCCACCG 60.047 61.111 15.20 11.51 42.58 4.94
4390 4760 2.879233 ATGAGCGTGGTTCCACCGT 61.879 57.895 15.20 3.76 42.58 4.83
4391 4761 2.280592 GAGCGTGGTTCCACCGTT 60.281 61.111 15.20 9.02 42.58 4.44
4392 4762 2.280592 AGCGTGGTTCCACCGTTC 60.281 61.111 15.20 3.91 42.58 3.95
4393 4763 2.589442 GCGTGGTTCCACCGTTCA 60.589 61.111 15.20 0.00 42.58 3.18
4394 4764 1.964373 GCGTGGTTCCACCGTTCAT 60.964 57.895 15.20 0.00 42.58 2.57
4395 4765 1.866237 CGTGGTTCCACCGTTCATG 59.134 57.895 15.20 0.00 42.58 3.07
4396 4766 1.573829 CGTGGTTCCACCGTTCATGG 61.574 60.000 15.20 0.00 42.58 3.66
4397 4767 0.536460 GTGGTTCCACCGTTCATGGT 60.536 55.000 10.56 0.00 42.58 3.55
4398 4768 0.183971 TGGTTCCACCGTTCATGGTT 59.816 50.000 0.00 0.00 42.58 3.67
4399 4769 0.596082 GGTTCCACCGTTCATGGTTG 59.404 55.000 0.00 0.00 41.38 3.77
4400 4770 1.314730 GTTCCACCGTTCATGGTTGT 58.685 50.000 0.00 0.00 41.38 3.32
4401 4771 1.265905 GTTCCACCGTTCATGGTTGTC 59.734 52.381 0.00 0.00 41.38 3.18
4402 4772 0.470341 TCCACCGTTCATGGTTGTCA 59.530 50.000 0.00 0.00 41.38 3.58
4403 4773 1.134068 TCCACCGTTCATGGTTGTCAA 60.134 47.619 0.00 0.00 41.38 3.18
4404 4774 1.678627 CCACCGTTCATGGTTGTCAAA 59.321 47.619 0.00 0.00 41.38 2.69
4405 4775 2.099921 CCACCGTTCATGGTTGTCAAAA 59.900 45.455 0.00 0.00 41.38 2.44
4406 4776 3.243704 CCACCGTTCATGGTTGTCAAAAT 60.244 43.478 0.00 0.00 41.38 1.82
4407 4777 4.367450 CACCGTTCATGGTTGTCAAAATT 58.633 39.130 0.00 0.00 41.38 1.82
4408 4778 4.444056 CACCGTTCATGGTTGTCAAAATTC 59.556 41.667 0.00 0.00 41.38 2.17
4409 4779 4.098654 ACCGTTCATGGTTGTCAAAATTCA 59.901 37.500 0.00 0.00 39.99 2.57
4410 4780 5.221422 ACCGTTCATGGTTGTCAAAATTCAT 60.221 36.000 0.00 0.00 39.99 2.57
4411 4781 5.345741 CCGTTCATGGTTGTCAAAATTCATC 59.654 40.000 0.00 0.00 0.00 2.92
4412 4782 6.151691 CGTTCATGGTTGTCAAAATTCATCT 58.848 36.000 0.00 0.00 0.00 2.90
4413 4783 6.642131 CGTTCATGGTTGTCAAAATTCATCTT 59.358 34.615 0.00 0.00 0.00 2.40
4414 4784 7.358600 CGTTCATGGTTGTCAAAATTCATCTTG 60.359 37.037 0.00 0.00 0.00 3.02
4415 4785 7.053316 TCATGGTTGTCAAAATTCATCTTGT 57.947 32.000 0.00 0.00 0.00 3.16
4416 4786 7.499292 TCATGGTTGTCAAAATTCATCTTGTT 58.501 30.769 0.00 0.00 0.00 2.83
4417 4787 7.986320 TCATGGTTGTCAAAATTCATCTTGTTT 59.014 29.630 0.00 0.00 0.00 2.83
4418 4788 8.614346 CATGGTTGTCAAAATTCATCTTGTTTT 58.386 29.630 0.00 0.00 0.00 2.43
4419 4789 8.558973 TGGTTGTCAAAATTCATCTTGTTTTT 57.441 26.923 0.00 0.00 0.00 1.94
4420 4790 9.658799 TGGTTGTCAAAATTCATCTTGTTTTTA 57.341 25.926 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.621629 TCTAAAGTCTGACAACAATAAAGGAAA 57.378 29.630 10.88 0.00 0.00 3.13
7 8 9.003658 ACATCTAAAGTCTGACAACAATAAAGG 57.996 33.333 10.88 0.00 0.00 3.11
11 12 8.783093 CCAAACATCTAAAGTCTGACAACAATA 58.217 33.333 10.88 0.00 0.00 1.90
12 13 7.651808 CCAAACATCTAAAGTCTGACAACAAT 58.348 34.615 10.88 0.00 0.00 2.71
13 14 6.459573 GCCAAACATCTAAAGTCTGACAACAA 60.460 38.462 10.88 0.00 0.00 2.83
14 15 5.008613 GCCAAACATCTAAAGTCTGACAACA 59.991 40.000 10.88 0.00 0.00 3.33
15 16 5.452777 GCCAAACATCTAAAGTCTGACAAC 58.547 41.667 10.88 0.00 0.00 3.32
16 17 4.518970 GGCCAAACATCTAAAGTCTGACAA 59.481 41.667 10.88 0.00 0.00 3.18
17 18 4.072131 GGCCAAACATCTAAAGTCTGACA 58.928 43.478 10.88 0.00 0.00 3.58
18 19 3.125316 CGGCCAAACATCTAAAGTCTGAC 59.875 47.826 2.24 0.00 0.00 3.51
19 20 3.244422 ACGGCCAAACATCTAAAGTCTGA 60.244 43.478 2.24 0.00 0.00 3.27
20 21 3.074412 ACGGCCAAACATCTAAAGTCTG 58.926 45.455 2.24 0.00 0.00 3.51
21 22 3.074412 CACGGCCAAACATCTAAAGTCT 58.926 45.455 2.24 0.00 0.00 3.24
22 23 2.812011 ACACGGCCAAACATCTAAAGTC 59.188 45.455 2.24 0.00 0.00 3.01
23 24 2.552315 CACACGGCCAAACATCTAAAGT 59.448 45.455 2.24 0.00 0.00 2.66
24 25 2.668279 GCACACGGCCAAACATCTAAAG 60.668 50.000 2.24 0.00 36.11 1.85
25 26 1.268352 GCACACGGCCAAACATCTAAA 59.732 47.619 2.24 0.00 36.11 1.85
26 27 0.878416 GCACACGGCCAAACATCTAA 59.122 50.000 2.24 0.00 36.11 2.10
27 28 0.250510 TGCACACGGCCAAACATCTA 60.251 50.000 2.24 0.00 43.89 1.98
28 29 0.895100 ATGCACACGGCCAAACATCT 60.895 50.000 2.24 0.00 43.89 2.90
29 30 0.456653 GATGCACACGGCCAAACATC 60.457 55.000 2.24 4.50 43.89 3.06
30 31 1.586028 GATGCACACGGCCAAACAT 59.414 52.632 2.24 0.00 43.89 2.71
31 32 2.560119 GGATGCACACGGCCAAACA 61.560 57.895 2.24 0.00 43.89 2.83
32 33 0.958382 TAGGATGCACACGGCCAAAC 60.958 55.000 2.24 0.00 43.89 2.93
33 34 0.250945 TTAGGATGCACACGGCCAAA 60.251 50.000 2.24 0.00 43.89 3.28
34 35 0.034574 ATTAGGATGCACACGGCCAA 60.035 50.000 2.24 0.00 43.89 4.52
35 36 0.034574 AATTAGGATGCACACGGCCA 60.035 50.000 2.24 0.00 43.89 5.36
36 37 1.961793 TAATTAGGATGCACACGGCC 58.038 50.000 0.00 0.00 43.89 6.13
37 38 4.062293 TGTATAATTAGGATGCACACGGC 58.938 43.478 0.00 0.00 45.13 5.68
38 39 6.293407 CCTTTGTATAATTAGGATGCACACGG 60.293 42.308 0.00 0.00 0.00 4.94
39 40 6.658831 CCTTTGTATAATTAGGATGCACACG 58.341 40.000 0.00 0.00 0.00 4.49
40 41 6.438763 GCCTTTGTATAATTAGGATGCACAC 58.561 40.000 0.00 0.00 0.00 3.82
41 42 5.534654 GGCCTTTGTATAATTAGGATGCACA 59.465 40.000 0.00 0.00 0.00 4.57
42 43 5.334879 CGGCCTTTGTATAATTAGGATGCAC 60.335 44.000 0.00 0.00 0.00 4.57
43 44 4.759693 CGGCCTTTGTATAATTAGGATGCA 59.240 41.667 0.00 0.00 0.00 3.96
44 45 4.156008 CCGGCCTTTGTATAATTAGGATGC 59.844 45.833 0.00 0.00 0.00 3.91
45 46 4.700213 CCCGGCCTTTGTATAATTAGGATG 59.300 45.833 0.00 0.00 0.00 3.51
46 47 4.352893 ACCCGGCCTTTGTATAATTAGGAT 59.647 41.667 0.00 0.00 0.00 3.24
47 48 3.717913 ACCCGGCCTTTGTATAATTAGGA 59.282 43.478 0.00 0.00 0.00 2.94
48 49 3.818773 CACCCGGCCTTTGTATAATTAGG 59.181 47.826 0.00 0.00 0.00 2.69
49 50 4.457466 ACACCCGGCCTTTGTATAATTAG 58.543 43.478 0.00 0.00 0.00 1.73
50 51 4.506937 ACACCCGGCCTTTGTATAATTA 57.493 40.909 0.00 0.00 0.00 1.40
51 52 3.375647 ACACCCGGCCTTTGTATAATT 57.624 42.857 0.00 0.00 0.00 1.40
52 53 3.375647 AACACCCGGCCTTTGTATAAT 57.624 42.857 0.00 0.00 0.00 1.28
53 54 2.883122 AACACCCGGCCTTTGTATAA 57.117 45.000 0.00 0.00 0.00 0.98
54 55 2.839425 AGTAACACCCGGCCTTTGTATA 59.161 45.455 0.00 0.00 0.00 1.47
55 56 1.631898 AGTAACACCCGGCCTTTGTAT 59.368 47.619 0.00 0.00 0.00 2.29
56 57 1.058284 AGTAACACCCGGCCTTTGTA 58.942 50.000 0.00 0.00 0.00 2.41
57 58 1.058284 TAGTAACACCCGGCCTTTGT 58.942 50.000 0.00 0.00 0.00 2.83
58 59 2.188062 TTAGTAACACCCGGCCTTTG 57.812 50.000 0.00 0.00 0.00 2.77
59 60 4.573021 TTATTAGTAACACCCGGCCTTT 57.427 40.909 0.00 0.00 0.00 3.11
60 61 4.457466 CATTATTAGTAACACCCGGCCTT 58.543 43.478 0.00 0.00 0.00 4.35
61 62 3.746432 GCATTATTAGTAACACCCGGCCT 60.746 47.826 0.00 0.00 0.00 5.19
62 63 2.551032 GCATTATTAGTAACACCCGGCC 59.449 50.000 0.00 0.00 0.00 6.13
63 64 3.473625 AGCATTATTAGTAACACCCGGC 58.526 45.455 0.00 0.00 0.00 6.13
64 65 5.355910 ACAAAGCATTATTAGTAACACCCGG 59.644 40.000 0.00 0.00 0.00 5.73
65 66 6.431198 ACAAAGCATTATTAGTAACACCCG 57.569 37.500 0.00 0.00 0.00 5.28
66 67 8.565416 GGATACAAAGCATTATTAGTAACACCC 58.435 37.037 0.00 0.00 0.00 4.61
67 68 8.280497 CGGATACAAAGCATTATTAGTAACACC 58.720 37.037 0.00 0.00 0.00 4.16
68 69 8.823818 ACGGATACAAAGCATTATTAGTAACAC 58.176 33.333 0.00 0.00 0.00 3.32
69 70 8.951787 ACGGATACAAAGCATTATTAGTAACA 57.048 30.769 0.00 0.00 0.00 2.41
72 73 9.602568 TCAAACGGATACAAAGCATTATTAGTA 57.397 29.630 0.00 0.00 0.00 1.82
73 74 8.500753 TCAAACGGATACAAAGCATTATTAGT 57.499 30.769 0.00 0.00 0.00 2.24
74 75 9.385902 CATCAAACGGATACAAAGCATTATTAG 57.614 33.333 0.00 0.00 33.95 1.73
75 76 7.860373 GCATCAAACGGATACAAAGCATTATTA 59.140 33.333 0.00 0.00 33.95 0.98
76 77 6.697019 GCATCAAACGGATACAAAGCATTATT 59.303 34.615 0.00 0.00 33.95 1.40
77 78 6.039717 AGCATCAAACGGATACAAAGCATTAT 59.960 34.615 0.00 0.00 33.95 1.28
78 79 5.356751 AGCATCAAACGGATACAAAGCATTA 59.643 36.000 0.00 0.00 33.95 1.90
79 80 4.158394 AGCATCAAACGGATACAAAGCATT 59.842 37.500 0.00 0.00 33.95 3.56
80 81 3.696051 AGCATCAAACGGATACAAAGCAT 59.304 39.130 0.00 0.00 33.95 3.79
81 82 3.081061 AGCATCAAACGGATACAAAGCA 58.919 40.909 0.00 0.00 33.95 3.91
82 83 3.764885 AGCATCAAACGGATACAAAGC 57.235 42.857 0.00 0.00 33.95 3.51
83 84 5.794687 TGTAGCATCAAACGGATACAAAG 57.205 39.130 0.00 0.00 33.95 2.77
84 85 6.751514 AATGTAGCATCAAACGGATACAAA 57.248 33.333 0.00 0.00 33.95 2.83
85 86 6.751514 AAATGTAGCATCAAACGGATACAA 57.248 33.333 0.00 0.00 33.95 2.41
86 87 6.372937 TCAAAATGTAGCATCAAACGGATACA 59.627 34.615 0.00 0.00 33.95 2.29
87 88 6.781138 TCAAAATGTAGCATCAAACGGATAC 58.219 36.000 0.00 0.00 33.95 2.24
88 89 6.821160 TCTCAAAATGTAGCATCAAACGGATA 59.179 34.615 0.00 0.00 33.95 2.59
89 90 5.647658 TCTCAAAATGTAGCATCAAACGGAT 59.352 36.000 0.00 0.00 36.39 4.18
90 91 5.000591 TCTCAAAATGTAGCATCAAACGGA 58.999 37.500 0.00 0.00 0.00 4.69
91 92 5.295431 TCTCAAAATGTAGCATCAAACGG 57.705 39.130 0.00 0.00 0.00 4.44
99 100 9.781834 CGGTTTTTATTATCTCAAAATGTAGCA 57.218 29.630 0.00 0.00 0.00 3.49
100 101 9.783256 ACGGTTTTTATTATCTCAAAATGTAGC 57.217 29.630 0.00 0.00 0.00 3.58
103 104 9.020731 AGGACGGTTTTTATTATCTCAAAATGT 57.979 29.630 0.00 0.00 0.00 2.71
104 105 9.855021 AAGGACGGTTTTTATTATCTCAAAATG 57.145 29.630 0.00 0.00 0.00 2.32
109 110 9.893634 TGATAAAGGACGGTTTTTATTATCTCA 57.106 29.630 10.78 5.05 31.50 3.27
137 138 3.462021 TGCAGCGCCAAGTTTTATTTTT 58.538 36.364 2.29 0.00 0.00 1.94
138 139 3.104843 TGCAGCGCCAAGTTTTATTTT 57.895 38.095 2.29 0.00 0.00 1.82
139 140 2.810439 TGCAGCGCCAAGTTTTATTT 57.190 40.000 2.29 0.00 0.00 1.40
140 141 2.609350 CATGCAGCGCCAAGTTTTATT 58.391 42.857 2.29 0.00 0.00 1.40
141 142 1.736696 GCATGCAGCGCCAAGTTTTAT 60.737 47.619 14.21 0.00 0.00 1.40
142 143 0.388391 GCATGCAGCGCCAAGTTTTA 60.388 50.000 14.21 0.00 0.00 1.52
143 144 1.665599 GCATGCAGCGCCAAGTTTT 60.666 52.632 14.21 0.00 0.00 2.43
144 145 2.048877 GCATGCAGCGCCAAGTTT 60.049 55.556 14.21 0.00 0.00 2.66
187 188 2.445145 TGGAATGGAGAGGGACAACAAA 59.555 45.455 0.00 0.00 0.00 2.83
193 194 3.652057 TTCATTGGAATGGAGAGGGAC 57.348 47.619 0.00 0.00 37.03 4.46
194 195 4.673328 TTTTCATTGGAATGGAGAGGGA 57.327 40.909 0.00 0.00 37.03 4.20
249 265 7.306213 TGATTTCGTACAAAACAAGTTGTCAA 58.694 30.769 9.40 0.00 40.85 3.18
251 267 7.271653 TGTTGATTTCGTACAAAACAAGTTGTC 59.728 33.333 9.40 0.00 40.85 3.18
253 269 7.499438 TGTTGATTTCGTACAAAACAAGTTG 57.501 32.000 0.00 0.00 34.52 3.16
294 310 9.567848 AACAATTATTTTTCTTGCGACGAATAT 57.432 25.926 0.00 0.00 0.00 1.28
295 311 8.845648 CAACAATTATTTTTCTTGCGACGAATA 58.154 29.630 0.00 0.00 0.00 1.75
296 312 7.619161 GCAACAATTATTTTTCTTGCGACGAAT 60.619 33.333 0.00 0.00 0.00 3.34
297 313 6.345408 GCAACAATTATTTTTCTTGCGACGAA 60.345 34.615 0.00 0.00 0.00 3.85
298 314 5.116377 GCAACAATTATTTTTCTTGCGACGA 59.884 36.000 0.00 0.00 0.00 4.20
299 315 5.297314 GCAACAATTATTTTTCTTGCGACG 58.703 37.500 0.00 0.00 0.00 5.12
300 316 5.608146 GGCAACAATTATTTTTCTTGCGAC 58.392 37.500 0.00 0.00 35.83 5.19
301 317 5.837586 GGCAACAATTATTTTTCTTGCGA 57.162 34.783 0.00 0.00 35.83 5.10
318 334 9.449719 AAATGTAGGCTATATAAGTATGGCAAC 57.550 33.333 4.07 4.60 44.11 4.17
386 406 1.628846 AGCCCGTTTCTGTTCCTGTAT 59.371 47.619 0.00 0.00 0.00 2.29
396 416 0.603975 GCTGACTGAAGCCCGTTTCT 60.604 55.000 0.00 0.00 37.20 2.52
429 449 4.663091 CCTTTTCGAACGTAAACTGTTTCG 59.337 41.667 9.38 14.49 0.00 3.46
436 456 3.231160 CATGGCCTTTTCGAACGTAAAC 58.769 45.455 3.32 0.00 0.00 2.01
442 462 4.889427 GGCATGGCCTTTTCGAAC 57.111 55.556 8.35 0.00 46.69 3.95
452 475 3.055602 AGAAATTTCTGGAAAGGCATGGC 60.056 43.478 19.86 12.14 35.89 4.40
484 510 1.136774 CGATTCTGCGTCCGTCAGA 59.863 57.895 8.88 8.88 38.67 3.27
491 517 0.040336 TAGCCGATCGATTCTGCGTC 60.040 55.000 18.66 0.00 39.36 5.19
493 519 0.730834 CCTAGCCGATCGATTCTGCG 60.731 60.000 18.66 0.00 39.36 5.18
725 769 2.737252 GGAATGTTTGACTGTCGAGACC 59.263 50.000 2.98 0.00 0.00 3.85
734 778 1.339151 GGAGCGGAGGAATGTTTGACT 60.339 52.381 0.00 0.00 0.00 3.41
875 920 3.788586 CTCTCAGCTCGCTCGCTCG 62.789 68.421 0.00 0.00 38.41 5.03
876 921 2.024588 CTCTCAGCTCGCTCGCTC 59.975 66.667 0.00 0.00 38.41 5.03
877 922 4.191950 GCTCTCAGCTCGCTCGCT 62.192 66.667 0.00 0.00 41.90 4.93
900 945 4.011023 CCAGGGAGTATCTATGTCGTAGG 58.989 52.174 0.00 0.00 33.73 3.18
950 996 0.587242 CGCGCCAATTCTCACGAATG 60.587 55.000 0.00 0.00 39.72 2.67
998 1045 4.996434 GATCTCCCGCCGCCATGG 62.996 72.222 7.63 7.63 42.50 3.66
1047 1094 0.037882 CAAAGCACGAGCAGAGGAGA 60.038 55.000 7.77 0.00 45.49 3.71
1091 1138 3.400928 CCTGCTCCTGCTGCTCCT 61.401 66.667 0.00 0.00 40.48 3.69
1092 1139 3.388703 CTCCTGCTCCTGCTGCTCC 62.389 68.421 0.00 0.00 40.48 4.70
1093 1140 1.688269 ATCTCCTGCTCCTGCTGCTC 61.688 60.000 0.00 0.00 40.48 4.26
1096 1143 0.540454 TGAATCTCCTGCTCCTGCTG 59.460 55.000 0.00 0.00 40.48 4.41
1183 1234 4.870426 AGCAGGAACACAATACGATTACAG 59.130 41.667 0.00 0.00 0.00 2.74
1193 1244 1.342174 CCAGCAAAGCAGGAACACAAT 59.658 47.619 0.00 0.00 37.40 2.71
1242 1295 1.152030 TCCTCTGAACCCAGCCAGT 60.152 57.895 0.00 0.00 40.20 4.00
1348 1401 2.315176 CTCACCTGCATAGCCTCTAGT 58.685 52.381 0.00 0.00 0.00 2.57
1499 1556 5.069383 CCATATGAATTTGGGAGTGATTGCA 59.931 40.000 3.65 0.00 0.00 4.08
1507 1564 4.097741 TCGTTTGCCATATGAATTTGGGAG 59.902 41.667 3.65 0.00 34.61 4.30
1527 1584 5.238650 CCTTTTGTATCCTTTGTCAGTTCGT 59.761 40.000 0.00 0.00 0.00 3.85
1588 1645 6.713731 AATAACTCCCCTTTCTTAACCTGA 57.286 37.500 0.00 0.00 0.00 3.86
1624 1681 1.642952 GGCTTTTCTCTGCCTCGCTG 61.643 60.000 0.00 0.00 45.26 5.18
1698 1756 5.526506 ACGACATATCCCAAACCTAGTAC 57.473 43.478 0.00 0.00 0.00 2.73
1699 1757 6.263842 CACTACGACATATCCCAAACCTAGTA 59.736 42.308 0.00 0.00 0.00 1.82
1700 1758 5.068723 CACTACGACATATCCCAAACCTAGT 59.931 44.000 0.00 0.00 0.00 2.57
1701 1759 5.509163 CCACTACGACATATCCCAAACCTAG 60.509 48.000 0.00 0.00 0.00 3.02
1702 1760 4.342951 CCACTACGACATATCCCAAACCTA 59.657 45.833 0.00 0.00 0.00 3.08
1703 1761 3.134081 CCACTACGACATATCCCAAACCT 59.866 47.826 0.00 0.00 0.00 3.50
1704 1762 3.463944 CCACTACGACATATCCCAAACC 58.536 50.000 0.00 0.00 0.00 3.27
1705 1763 2.870411 GCCACTACGACATATCCCAAAC 59.130 50.000 0.00 0.00 0.00 2.93
1707 1765 2.102420 CAGCCACTACGACATATCCCAA 59.898 50.000 0.00 0.00 0.00 4.12
1708 1766 1.686587 CAGCCACTACGACATATCCCA 59.313 52.381 0.00 0.00 0.00 4.37
1713 1778 0.459899 CTGCCAGCCACTACGACATA 59.540 55.000 0.00 0.00 0.00 2.29
1715 1780 1.468506 TTCTGCCAGCCACTACGACA 61.469 55.000 0.00 0.00 0.00 4.35
1726 1791 4.260661 CGAATCACATCAGAATTCTGCCAG 60.261 45.833 27.45 20.69 43.46 4.85
1773 1845 0.037882 TCTTCCTCTGCTCAGCGTTG 60.038 55.000 0.00 0.00 0.00 4.10
1809 1881 5.467705 ACTTTTGAATGCTCAAGATCTTGC 58.532 37.500 27.45 18.64 42.48 4.01
1819 1891 5.181690 TGTGTACCAACTTTTGAATGCTC 57.818 39.130 0.00 0.00 0.00 4.26
1842 1914 8.367660 TCTCAATTACAGTTCTACATCTTCCT 57.632 34.615 0.00 0.00 0.00 3.36
1844 1916 9.862371 TCTTCTCAATTACAGTTCTACATCTTC 57.138 33.333 0.00 0.00 0.00 2.87
1848 1920 9.606631 GGATTCTTCTCAATTACAGTTCTACAT 57.393 33.333 0.00 0.00 0.00 2.29
1849 1921 8.816894 AGGATTCTTCTCAATTACAGTTCTACA 58.183 33.333 0.00 0.00 0.00 2.74
1850 1922 9.308318 GAGGATTCTTCTCAATTACAGTTCTAC 57.692 37.037 0.00 0.00 0.00 2.59
1851 1923 8.191446 CGAGGATTCTTCTCAATTACAGTTCTA 58.809 37.037 0.00 0.00 0.00 2.10
1853 1925 7.036220 TCGAGGATTCTTCTCAATTACAGTTC 58.964 38.462 0.00 0.00 0.00 3.01
1855 1927 6.406400 CCTCGAGGATTCTTCTCAATTACAGT 60.406 42.308 28.21 0.00 37.39 3.55
1856 1928 5.982516 CCTCGAGGATTCTTCTCAATTACAG 59.017 44.000 28.21 0.00 37.39 2.74
1857 1929 5.422331 ACCTCGAGGATTCTTCTCAATTACA 59.578 40.000 37.69 0.00 38.94 2.41
1872 1944 2.166459 CACAGAATTAGCACCTCGAGGA 59.834 50.000 37.69 15.75 38.94 3.71
1877 1949 5.355350 ACATAAAGCACAGAATTAGCACCTC 59.645 40.000 0.00 0.00 0.00 3.85
1879 1951 5.123820 TCACATAAAGCACAGAATTAGCACC 59.876 40.000 0.00 0.00 0.00 5.01
1889 1961 4.083643 CCTGAACAGTCACATAAAGCACAG 60.084 45.833 1.18 0.00 0.00 3.66
1891 1963 4.065088 TCCTGAACAGTCACATAAAGCAC 58.935 43.478 1.18 0.00 0.00 4.40
1897 1969 5.070446 AGACTTTGTCCTGAACAGTCACATA 59.930 40.000 0.00 0.00 39.58 2.29
1899 1971 3.197766 AGACTTTGTCCTGAACAGTCACA 59.802 43.478 0.00 1.30 39.58 3.58
1900 1972 3.798202 AGACTTTGTCCTGAACAGTCAC 58.202 45.455 0.00 0.00 39.58 3.67
1901 1973 3.706594 AGAGACTTTGTCCTGAACAGTCA 59.293 43.478 0.00 0.00 39.58 3.41
1902 1974 4.054671 CAGAGACTTTGTCCTGAACAGTC 58.945 47.826 9.15 0.00 39.58 3.51
1903 1975 3.706594 TCAGAGACTTTGTCCTGAACAGT 59.293 43.478 12.81 0.00 39.58 3.55
1904 1976 4.327982 TCAGAGACTTTGTCCTGAACAG 57.672 45.455 12.81 0.00 39.58 3.16
1920 1992 1.458827 GCTCGTCTTTGCACTTCAGAG 59.541 52.381 0.00 0.00 0.00 3.35
1937 2009 4.022503 ACTCTTCAGCCTTCAATTTTGCTC 60.023 41.667 0.00 0.00 30.08 4.26
1954 2026 3.763897 ACCCATACATTTGCCAACTCTTC 59.236 43.478 0.00 0.00 0.00 2.87
1981 2053 6.260271 CCCTCAAAAAGTAATATCGGACTTCC 59.740 42.308 0.00 0.00 34.81 3.46
1987 2059 8.345565 CAGATTTCCCTCAAAAAGTAATATCGG 58.654 37.037 0.00 0.00 0.00 4.18
1989 2061 8.686334 TGCAGATTTCCCTCAAAAAGTAATATC 58.314 33.333 0.00 0.00 0.00 1.63
1995 2067 4.473444 TCTGCAGATTTCCCTCAAAAAGT 58.527 39.130 13.74 0.00 0.00 2.66
1996 2068 4.763793 TCTCTGCAGATTTCCCTCAAAAAG 59.236 41.667 18.63 0.00 0.00 2.27
1998 2070 4.371624 TCTCTGCAGATTTCCCTCAAAA 57.628 40.909 18.63 0.00 0.00 2.44
2002 2074 3.625649 AGTTCTCTGCAGATTTCCCTC 57.374 47.619 18.63 4.21 0.00 4.30
2003 2075 5.249420 GTTAAGTTCTCTGCAGATTTCCCT 58.751 41.667 18.63 6.30 0.00 4.20
2004 2076 4.093556 CGTTAAGTTCTCTGCAGATTTCCC 59.906 45.833 18.63 3.98 0.00 3.97
2005 2077 4.436183 GCGTTAAGTTCTCTGCAGATTTCC 60.436 45.833 18.63 5.81 0.00 3.13
2007 2079 4.065088 TGCGTTAAGTTCTCTGCAGATTT 58.935 39.130 18.63 11.77 0.00 2.17
2008 2080 3.664107 TGCGTTAAGTTCTCTGCAGATT 58.336 40.909 18.63 11.21 0.00 2.40
2041 2117 3.244146 CCACATGCCATGAACCTGAAAAA 60.244 43.478 12.53 0.00 0.00 1.94
2084 2160 0.391661 CCTGGCAATGTACAGAGCGT 60.392 55.000 14.00 0.00 36.86 5.07
2114 2190 3.051581 AGCTCCATACCACTGGATGAAT 58.948 45.455 0.71 0.00 44.23 2.57
2133 2209 1.654602 GTCTCGGAAGCTACGAAAAGC 59.345 52.381 13.46 0.00 40.16 3.51
2138 2214 0.809385 CCAAGTCTCGGAAGCTACGA 59.191 55.000 12.15 12.15 38.79 3.43
2139 2215 0.179134 CCCAAGTCTCGGAAGCTACG 60.179 60.000 4.50 4.50 0.00 3.51
2147 2223 2.853235 AACCTAAACCCAAGTCTCGG 57.147 50.000 0.00 0.00 0.00 4.63
2156 2232 7.413988 GCAAATGCATCAAATAAACCTAAACCC 60.414 37.037 0.00 0.00 41.59 4.11
2297 2382 9.338622 GTGGTTGCATTTATAAATACTAGGAGT 57.661 33.333 10.34 0.00 0.00 3.85
2298 2383 8.784043 GGTGGTTGCATTTATAAATACTAGGAG 58.216 37.037 10.34 0.00 0.00 3.69
2299 2384 8.275758 TGGTGGTTGCATTTATAAATACTAGGA 58.724 33.333 10.34 0.00 0.00 2.94
2300 2385 8.349983 GTGGTGGTTGCATTTATAAATACTAGG 58.650 37.037 10.34 0.00 0.00 3.02
2332 2417 0.518636 CCTGTCAACTCGGCATTGTG 59.481 55.000 0.00 0.00 0.00 3.33
2341 2426 2.139118 GTCTCAGCAACCTGTCAACTC 58.861 52.381 0.00 0.00 40.09 3.01
2462 2547 0.108424 AAGAGATGGCGTGTCAGAGC 60.108 55.000 6.63 0.00 0.00 4.09
2616 2713 3.072944 AGTGATCTGCAAACTCTTGAGC 58.927 45.455 0.00 0.00 34.14 4.26
2770 2867 3.097728 CGTGCGACGTGTGTCTCC 61.098 66.667 0.00 0.00 43.21 3.71
2774 2871 2.430244 GATCCGTGCGACGTGTGT 60.430 61.111 0.00 0.00 40.58 3.72
2906 3012 9.865321 AGAAAAAGCTACGTAATATGTTACTGA 57.135 29.630 10.21 0.00 38.41 3.41
2917 3023 4.746115 TGCGAGAAAGAAAAAGCTACGTAA 59.254 37.500 0.00 0.00 0.00 3.18
2920 3026 3.184581 AGTGCGAGAAAGAAAAAGCTACG 59.815 43.478 0.00 0.00 0.00 3.51
2921 3027 4.733972 AGTGCGAGAAAGAAAAAGCTAC 57.266 40.909 0.00 0.00 0.00 3.58
2922 3028 4.024048 CCAAGTGCGAGAAAGAAAAAGCTA 60.024 41.667 0.00 0.00 0.00 3.32
2923 3029 3.243201 CCAAGTGCGAGAAAGAAAAAGCT 60.243 43.478 0.00 0.00 0.00 3.74
2924 3030 3.045688 CCAAGTGCGAGAAAGAAAAAGC 58.954 45.455 0.00 0.00 0.00 3.51
2925 3031 3.045688 GCCAAGTGCGAGAAAGAAAAAG 58.954 45.455 0.00 0.00 0.00 2.27
2930 3036 0.106708 AGTGCCAAGTGCGAGAAAGA 59.893 50.000 0.00 0.00 45.60 2.52
2931 3037 0.236711 CAGTGCCAAGTGCGAGAAAG 59.763 55.000 0.00 0.00 45.60 2.62
2932 3038 1.165907 CCAGTGCCAAGTGCGAGAAA 61.166 55.000 0.00 0.00 45.60 2.52
2933 3039 1.597854 CCAGTGCCAAGTGCGAGAA 60.598 57.895 0.00 0.00 45.60 2.87
2934 3040 2.031012 CCAGTGCCAAGTGCGAGA 59.969 61.111 0.00 0.00 45.60 4.04
2935 3041 3.730761 GCCAGTGCCAAGTGCGAG 61.731 66.667 0.00 0.00 45.60 5.03
2976 3083 3.243839 ACCTGCATTTCAACAGCGATTTT 60.244 39.130 0.00 0.00 32.37 1.82
3057 3164 1.875514 CATCCACCACGCCAATCTATG 59.124 52.381 0.00 0.00 0.00 2.23
3125 3232 3.938334 GGTGAAATTGTGCTGTGGTTTTT 59.062 39.130 0.00 0.00 0.00 1.94
3203 3315 3.185365 TACAACATCGGCAGCGCG 61.185 61.111 0.00 0.00 0.00 6.86
3222 3334 5.138276 TGTAGCCGAGAATATCTTGTAGGT 58.862 41.667 0.00 0.00 0.00 3.08
3245 3357 5.750352 TCCTTTGATAAGTTTACCGGACT 57.250 39.130 9.46 0.00 0.00 3.85
3277 3465 5.007626 TCAGGAAAGAAAAGTCGACAATGTG 59.992 40.000 19.50 1.33 0.00 3.21
3286 3474 7.094762 ACGTGGATTATTCAGGAAAGAAAAGTC 60.095 37.037 0.00 0.00 0.00 3.01
3292 3480 5.046591 AGTGACGTGGATTATTCAGGAAAGA 60.047 40.000 0.00 0.00 0.00 2.52
3312 3501 3.324846 AGCATACAGGAACAGACAAGTGA 59.675 43.478 0.00 0.00 0.00 3.41
3352 3550 2.989253 TGTCCGCTCTCGCCTGAA 60.989 61.111 0.00 0.00 0.00 3.02
3365 3563 1.557269 ATGTGCCTCCACCTCTGTCC 61.557 60.000 0.00 0.00 41.35 4.02
3455 3653 1.152819 CATGCATCACCAGGGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
3470 3676 1.063006 CATTCCGCCGTTCAGCATG 59.937 57.895 0.00 0.00 37.54 4.06
3491 3707 1.337167 TGCGATGTCTGGTCAGAGTTG 60.337 52.381 0.28 0.00 38.27 3.16
3558 3774 1.134367 TGCTCGGCCGCTATATCATAC 59.866 52.381 23.51 0.01 0.00 2.39
3565 3781 1.448540 GCATATGCTCGGCCGCTAT 60.449 57.895 23.51 16.47 38.21 2.97
3747 3963 5.357742 TCTATTACAGCAGATTTCCAGCA 57.642 39.130 0.00 0.00 0.00 4.41
3809 4025 4.227134 AGGCCGCATAGCTCGTGG 62.227 66.667 10.60 10.60 37.08 4.94
4050 4417 3.400054 GGCGGAGTACAAGGGCCT 61.400 66.667 0.00 0.00 40.59 5.19
4292 4662 8.641155 CATTTTATACACCGTGTACATATACCG 58.359 37.037 13.60 0.00 35.42 4.02
4293 4663 8.928733 CCATTTTATACACCGTGTACATATACC 58.071 37.037 13.60 0.00 35.42 2.73
4294 4664 9.695526 TCCATTTTATACACCGTGTACATATAC 57.304 33.333 13.60 0.00 35.42 1.47
4296 4666 9.616156 TTTCCATTTTATACACCGTGTACATAT 57.384 29.630 13.60 1.91 35.42 1.78
4326 4696 1.871039 CAACTCGTTACCCCACACAAG 59.129 52.381 0.00 0.00 0.00 3.16
4327 4697 1.485480 TCAACTCGTTACCCCACACAA 59.515 47.619 0.00 0.00 0.00 3.33
4328 4698 1.121378 TCAACTCGTTACCCCACACA 58.879 50.000 0.00 0.00 0.00 3.72
4329 4699 2.289195 TGATCAACTCGTTACCCCACAC 60.289 50.000 0.00 0.00 0.00 3.82
4330 4700 1.972075 TGATCAACTCGTTACCCCACA 59.028 47.619 0.00 0.00 0.00 4.17
4331 4701 2.754946 TGATCAACTCGTTACCCCAC 57.245 50.000 0.00 0.00 0.00 4.61
4332 4702 2.835156 TGATGATCAACTCGTTACCCCA 59.165 45.455 0.00 0.00 0.00 4.96
4333 4703 3.536956 TGATGATCAACTCGTTACCCC 57.463 47.619 0.00 0.00 0.00 4.95
4334 4704 3.809832 CCATGATGATCAACTCGTTACCC 59.190 47.826 0.00 0.00 0.00 3.69
4335 4705 4.693283 TCCATGATGATCAACTCGTTACC 58.307 43.478 0.00 0.00 0.00 2.85
4336 4706 6.662414 TTTCCATGATGATCAACTCGTTAC 57.338 37.500 0.00 0.00 0.00 2.50
4337 4707 7.864108 AATTTCCATGATGATCAACTCGTTA 57.136 32.000 0.00 0.00 0.00 3.18
4338 4708 6.764308 AATTTCCATGATGATCAACTCGTT 57.236 33.333 0.00 0.00 0.00 3.85
4339 4709 7.050377 AGTAATTTCCATGATGATCAACTCGT 58.950 34.615 0.00 0.00 0.00 4.18
4340 4710 7.488187 AGTAATTTCCATGATGATCAACTCG 57.512 36.000 0.00 0.00 0.00 4.18
4341 4711 8.680903 ACAAGTAATTTCCATGATGATCAACTC 58.319 33.333 0.00 0.00 0.00 3.01
4342 4712 8.464404 CACAAGTAATTTCCATGATGATCAACT 58.536 33.333 0.00 0.00 0.00 3.16
4343 4713 7.221452 GCACAAGTAATTTCCATGATGATCAAC 59.779 37.037 0.00 0.00 0.00 3.18
4344 4714 7.093858 TGCACAAGTAATTTCCATGATGATCAA 60.094 33.333 0.00 0.00 0.00 2.57
4345 4715 6.377712 TGCACAAGTAATTTCCATGATGATCA 59.622 34.615 0.00 0.00 0.00 2.92
4346 4716 6.694411 GTGCACAAGTAATTTCCATGATGATC 59.306 38.462 13.17 0.00 0.00 2.92
4347 4717 6.153170 TGTGCACAAGTAATTTCCATGATGAT 59.847 34.615 19.28 0.00 0.00 2.45
4348 4718 5.476254 TGTGCACAAGTAATTTCCATGATGA 59.524 36.000 19.28 0.00 0.00 2.92
4349 4719 5.712004 TGTGCACAAGTAATTTCCATGATG 58.288 37.500 19.28 0.00 0.00 3.07
4350 4720 5.981088 TGTGCACAAGTAATTTCCATGAT 57.019 34.783 19.28 0.00 0.00 2.45
4351 4721 5.476254 TCATGTGCACAAGTAATTTCCATGA 59.524 36.000 25.72 14.99 35.21 3.07
4352 4722 5.712004 TCATGTGCACAAGTAATTTCCATG 58.288 37.500 25.72 12.77 0.00 3.66
4353 4723 5.622914 GCTCATGTGCACAAGTAATTTCCAT 60.623 40.000 25.72 0.00 0.00 3.41
4354 4724 4.321156 GCTCATGTGCACAAGTAATTTCCA 60.321 41.667 25.72 0.00 0.00 3.53
4355 4725 4.168760 GCTCATGTGCACAAGTAATTTCC 58.831 43.478 25.72 0.00 0.00 3.13
4356 4726 3.848019 CGCTCATGTGCACAAGTAATTTC 59.152 43.478 25.72 6.89 0.00 2.17
4357 4727 3.253188 ACGCTCATGTGCACAAGTAATTT 59.747 39.130 25.72 1.57 0.00 1.82
4358 4728 2.813754 ACGCTCATGTGCACAAGTAATT 59.186 40.909 25.72 2.45 0.00 1.40
4359 4729 2.160219 CACGCTCATGTGCACAAGTAAT 59.840 45.455 25.72 3.33 32.31 1.89
4360 4730 1.530720 CACGCTCATGTGCACAAGTAA 59.469 47.619 25.72 8.56 32.31 2.24
4361 4731 1.147473 CACGCTCATGTGCACAAGTA 58.853 50.000 25.72 11.16 32.31 2.24
4362 4732 1.509644 CCACGCTCATGTGCACAAGT 61.510 55.000 25.72 15.40 38.55 3.16
4363 4733 1.208358 CCACGCTCATGTGCACAAG 59.792 57.895 25.72 20.48 38.55 3.16
4364 4734 1.100463 AACCACGCTCATGTGCACAA 61.100 50.000 25.72 7.43 38.55 3.33
4365 4735 1.506309 GAACCACGCTCATGTGCACA 61.506 55.000 24.08 24.08 38.55 4.57
4366 4736 1.207593 GAACCACGCTCATGTGCAC 59.792 57.895 18.98 10.75 38.55 4.57
4367 4737 1.965930 GGAACCACGCTCATGTGCA 60.966 57.895 18.98 0.00 38.55 4.57
4368 4738 1.965930 TGGAACCACGCTCATGTGC 60.966 57.895 9.72 9.72 38.55 4.57
4369 4739 1.868997 GTGGAACCACGCTCATGTG 59.131 57.895 8.25 0.00 37.19 3.21
4370 4740 4.379174 GTGGAACCACGCTCATGT 57.621 55.556 8.25 0.00 37.19 3.21
4381 4751 1.265905 GACAACCATGAACGGTGGAAC 59.734 52.381 0.00 0.00 39.95 3.62
4382 4752 1.134068 TGACAACCATGAACGGTGGAA 60.134 47.619 0.00 0.00 39.95 3.53
4383 4753 0.470341 TGACAACCATGAACGGTGGA 59.530 50.000 0.00 0.00 39.95 4.02
4384 4754 1.313772 TTGACAACCATGAACGGTGG 58.686 50.000 0.00 0.00 39.95 4.61
4385 4755 3.428746 TTTTGACAACCATGAACGGTG 57.571 42.857 0.00 0.00 39.95 4.94
4386 4756 4.098654 TGAATTTTGACAACCATGAACGGT 59.901 37.500 0.00 0.00 42.71 4.83
4387 4757 4.615949 TGAATTTTGACAACCATGAACGG 58.384 39.130 0.00 0.00 0.00 4.44
4388 4758 6.151691 AGATGAATTTTGACAACCATGAACG 58.848 36.000 0.00 0.00 0.00 3.95
4389 4759 7.439056 ACAAGATGAATTTTGACAACCATGAAC 59.561 33.333 0.00 0.00 0.00 3.18
4390 4760 7.499292 ACAAGATGAATTTTGACAACCATGAA 58.501 30.769 0.00 0.00 0.00 2.57
4391 4761 7.053316 ACAAGATGAATTTTGACAACCATGA 57.947 32.000 0.00 0.00 0.00 3.07
4392 4762 7.718272 AACAAGATGAATTTTGACAACCATG 57.282 32.000 0.96 0.00 0.00 3.66
4393 4763 8.735692 AAAACAAGATGAATTTTGACAACCAT 57.264 26.923 0.96 0.00 0.00 3.55
4394 4764 8.558973 AAAAACAAGATGAATTTTGACAACCA 57.441 26.923 0.96 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.