Multiple sequence alignment - TraesCS2D01G427700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G427700 chr2D 100.000 7723 0 0 1 7723 539869290 539877012 0.000000e+00 14262.0
1 TraesCS2D01G427700 chr2A 95.585 4145 127 33 2020 6146 683506928 683511034 0.000000e+00 6589.0
2 TraesCS2D01G427700 chr2A 89.992 1209 65 23 780 1945 683505721 683506916 0.000000e+00 1511.0
3 TraesCS2D01G427700 chr2A 95.382 693 25 5 6343 7031 683511195 683511884 0.000000e+00 1096.0
4 TraesCS2D01G427700 chr2A 86.264 182 18 4 7410 7587 683512323 683512501 2.840000e-44 191.0
5 TraesCS2D01G427700 chr2A 89.552 67 5 1 941 1005 375036990 375037056 4.970000e-12 84.2
6 TraesCS2D01G427700 chr2B 96.818 2640 65 10 1982 4612 644145622 644148251 0.000000e+00 4392.0
7 TraesCS2D01G427700 chr2B 96.985 2023 53 6 5017 7032 644148638 644150659 0.000000e+00 3391.0
8 TraesCS2D01G427700 chr2B 88.917 1200 72 28 784 1945 644144450 644145626 0.000000e+00 1423.0
9 TraesCS2D01G427700 chr2B 97.333 375 4 2 4598 4972 644148269 644148637 3.930000e-177 632.0
10 TraesCS2D01G427700 chr1B 90.728 2707 182 38 2203 4884 591440143 591437481 0.000000e+00 3544.0
11 TraesCS2D01G427700 chr1B 92.885 773 46 3 5059 5822 591437366 591436594 0.000000e+00 1114.0
12 TraesCS2D01G427700 chr1B 84.699 366 39 12 847 1208 591440951 591440599 4.430000e-92 350.0
13 TraesCS2D01G427700 chr1B 89.338 272 21 5 6344 6608 591436291 591436021 1.240000e-87 335.0
14 TraesCS2D01G427700 chr1B 92.157 51 1 1 6667 6714 591435995 591435945 1.390000e-07 69.4
15 TraesCS2D01G427700 chr1B 92.500 40 3 0 5746 5785 591436634 591436595 3.010000e-04 58.4
16 TraesCS2D01G427700 chr1D 89.777 2739 179 29 2197 4884 436623183 436620495 0.000000e+00 3413.0
17 TraesCS2D01G427700 chr1D 89.765 938 63 17 4916 5822 436620496 436619561 0.000000e+00 1170.0
18 TraesCS2D01G427700 chr1D 91.751 788 46 16 1 779 323869711 323868934 0.000000e+00 1077.0
19 TraesCS2D01G427700 chr1D 84.097 371 41 11 847 1208 436623979 436623618 7.420000e-90 342.0
20 TraesCS2D01G427700 chr1D 89.668 271 22 3 6342 6606 436619336 436619066 2.670000e-89 340.0
21 TraesCS2D01G427700 chr1D 97.917 48 1 0 6667 6714 436619038 436618991 4.970000e-12 84.2
22 TraesCS2D01G427700 chr1D 93.333 45 3 0 5869 5913 436619574 436619530 5.000000e-07 67.6
23 TraesCS2D01G427700 chr1D 92.500 40 3 0 5746 5785 436619601 436619562 3.010000e-04 58.4
24 TraesCS2D01G427700 chr1A 89.306 1917 139 21 2727 4612 533702144 533700263 0.000000e+00 2344.0
25 TraesCS2D01G427700 chr1A 88.659 1402 101 21 2362 3729 81358711 81357334 0.000000e+00 1655.0
26 TraesCS2D01G427700 chr1A 90.632 918 68 7 4916 5822 533699958 533699048 0.000000e+00 1203.0
27 TraesCS2D01G427700 chr1A 94.774 287 15 0 4598 4884 533700243 533699957 1.530000e-121 448.0
28 TraesCS2D01G427700 chr1A 84.794 388 31 19 847 1223 533703799 533703429 1.580000e-96 364.0
29 TraesCS2D01G427700 chr1A 89.377 273 22 4 6342 6608 533698823 533698552 3.450000e-88 337.0
30 TraesCS2D01G427700 chr1A 93.064 173 12 0 2551 2723 533702553 533702381 3.580000e-63 254.0
31 TraesCS2D01G427700 chr1A 91.503 153 11 2 2200 2351 81364311 81364160 7.850000e-50 209.0
32 TraesCS2D01G427700 chr1A 93.750 48 3 0 6667 6714 533698526 533698479 1.080000e-08 73.1
33 TraesCS2D01G427700 chr1A 95.238 42 2 0 5872 5913 533699058 533699017 5.000000e-07 67.6
34 TraesCS2D01G427700 chr3D 90.806 794 53 15 1 784 96590248 96591031 0.000000e+00 1044.0
35 TraesCS2D01G427700 chr6D 88.875 791 50 21 3 779 388356243 388355477 0.000000e+00 939.0
36 TraesCS2D01G427700 chr7D 88.025 785 70 21 2 779 568822259 568823026 0.000000e+00 907.0
37 TraesCS2D01G427700 chr5D 87.452 781 63 20 1 779 58286331 58285584 0.000000e+00 867.0
38 TraesCS2D01G427700 chr5D 83.605 799 87 30 3 790 407342576 407341811 0.000000e+00 710.0
39 TraesCS2D01G427700 chr5D 88.785 107 9 3 930 1033 433038094 433038200 2.260000e-25 128.0
40 TraesCS2D01G427700 chr3B 88.259 741 64 17 1 736 34157232 34157954 0.000000e+00 865.0
41 TraesCS2D01G427700 chr3B 88.462 78 8 1 7194 7271 823965508 823965584 8.250000e-15 93.5
42 TraesCS2D01G427700 chr3A 85.714 791 78 24 2 783 6836101 6835337 0.000000e+00 802.0
43 TraesCS2D01G427700 chr3A 85.588 791 79 24 2 783 6859525 6858761 0.000000e+00 797.0
44 TraesCS2D01G427700 chrUn 93.581 296 18 1 484 779 48200291 48199997 2.560000e-119 440.0
45 TraesCS2D01G427700 chrUn 93.581 296 18 1 484 779 429286478 429286184 2.560000e-119 440.0
46 TraesCS2D01G427700 chr7A 83.631 336 38 13 449 779 11866742 11866419 4.530000e-77 300.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G427700 chr2D 539869290 539877012 7722 False 14262.000000 14262 100.000000 1 7723 1 chr2D.!!$F1 7722
1 TraesCS2D01G427700 chr2A 683505721 683512501 6780 False 2346.750000 6589 91.805750 780 7587 4 chr2A.!!$F2 6807
2 TraesCS2D01G427700 chr2B 644144450 644150659 6209 False 2459.500000 4392 95.013250 784 7032 4 chr2B.!!$F1 6248
3 TraesCS2D01G427700 chr1B 591435945 591440951 5006 True 911.800000 3544 90.384500 847 6714 6 chr1B.!!$R1 5867
4 TraesCS2D01G427700 chr1D 323868934 323869711 777 True 1077.000000 1077 91.751000 1 779 1 chr1D.!!$R1 778
5 TraesCS2D01G427700 chr1D 436618991 436623979 4988 True 782.171429 3413 91.008143 847 6714 7 chr1D.!!$R2 5867
6 TraesCS2D01G427700 chr1A 81357334 81358711 1377 True 1655.000000 1655 88.659000 2362 3729 1 chr1A.!!$R1 1367
7 TraesCS2D01G427700 chr1A 533698479 533703799 5320 True 636.337500 2344 91.366875 847 6714 8 chr1A.!!$R3 5867
8 TraesCS2D01G427700 chr3D 96590248 96591031 783 False 1044.000000 1044 90.806000 1 784 1 chr3D.!!$F1 783
9 TraesCS2D01G427700 chr6D 388355477 388356243 766 True 939.000000 939 88.875000 3 779 1 chr6D.!!$R1 776
10 TraesCS2D01G427700 chr7D 568822259 568823026 767 False 907.000000 907 88.025000 2 779 1 chr7D.!!$F1 777
11 TraesCS2D01G427700 chr5D 58285584 58286331 747 True 867.000000 867 87.452000 1 779 1 chr5D.!!$R1 778
12 TraesCS2D01G427700 chr5D 407341811 407342576 765 True 710.000000 710 83.605000 3 790 1 chr5D.!!$R2 787
13 TraesCS2D01G427700 chr3B 34157232 34157954 722 False 865.000000 865 88.259000 1 736 1 chr3B.!!$F1 735
14 TraesCS2D01G427700 chr3A 6835337 6836101 764 True 802.000000 802 85.714000 2 783 1 chr3A.!!$R1 781
15 TraesCS2D01G427700 chr3A 6858761 6859525 764 True 797.000000 797 85.588000 2 783 1 chr3A.!!$R2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 829 0.035598 CAACCACCCGATACACCACA 59.964 55.000 0.00 0.00 0.00 4.17 F
758 830 0.035739 AACCACCCGATACACCACAC 59.964 55.000 0.00 0.00 0.00 3.82 F
773 845 0.438445 CACACACGTGGCAGTTATCG 59.562 55.000 21.57 0.11 39.64 2.92 F
774 846 0.669318 ACACACGTGGCAGTTATCGG 60.669 55.000 21.57 0.00 34.19 4.18 F
1414 1537 0.743701 CTGGCTCGATCTGCTGCTTT 60.744 55.000 0.00 0.00 0.00 3.51 F
1647 1791 1.127567 TGTGAACTGAGGAGGGGTGG 61.128 60.000 0.00 0.00 0.00 4.61 F
1941 2111 1.135286 GCAAGCCACTATTTGCCAGAC 60.135 52.381 0.00 0.00 42.88 3.51 F
1967 2137 1.422531 AGGCTTCCAATTTTGCACCA 58.577 45.000 0.00 0.00 0.00 4.17 F
1968 2138 1.767681 AGGCTTCCAATTTTGCACCAA 59.232 42.857 0.00 0.00 0.00 3.67 F
4351 4892 1.836604 TTTGGGACTTGGGCTTGCC 60.837 57.895 2.49 2.49 0.00 4.52 F
4474 5015 1.153086 CATGGTAGGGACAGCCAGC 60.153 63.158 0.00 0.00 37.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 2087 1.176527 GCAAATAGTGGCTTGCCAGA 58.823 50.000 15.31 6.61 41.69 3.86 R
1948 2118 1.422531 TGGTGCAAAATTGGAAGCCT 58.577 45.000 0.00 0.00 0.00 4.58 R
1949 2119 1.872952 GTTGGTGCAAAATTGGAAGCC 59.127 47.619 0.00 0.00 0.00 4.35 R
1950 2120 2.545106 CAGTTGGTGCAAAATTGGAAGC 59.455 45.455 0.00 0.00 0.00 3.86 R
3095 3618 1.139058 ACAAGACAGCGAAGAACCTGT 59.861 47.619 0.00 0.00 44.43 4.00 R
3283 3806 6.372659 ACACAATATCTCAAGTAAGCAACAGG 59.627 38.462 0.00 0.00 0.00 4.00 R
3791 4322 2.494059 ACACTGTTCCTCATTTCCACG 58.506 47.619 0.00 0.00 0.00 4.94 R
4351 4892 0.464870 CATCTGCTGTCCCCAGAGAG 59.535 60.000 0.00 0.00 42.11 3.20 R
4474 5015 1.152989 GCATCTCAGCAGCCTTCTCG 61.153 60.000 0.00 0.00 0.00 4.04 R
6186 6816 1.134340 ACCGAACACAAGGTACAGCAA 60.134 47.619 0.00 0.00 39.30 3.91 R
6967 7634 0.741221 CTAGCACTCCCCGCAGTTTC 60.741 60.000 0.00 0.00 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 75 2.157085 GCAACTCTCTTTTACCCGAACG 59.843 50.000 0.00 0.00 0.00 3.95
77 81 5.138125 TCTCTTTTACCCGAACGTGTTAT 57.862 39.130 0.00 0.00 0.00 1.89
80 85 7.151308 TCTCTTTTACCCGAACGTGTTATTTA 58.849 34.615 0.00 0.00 0.00 1.40
98 105 4.640789 TTTATTGCCACGTCTGTTTGTT 57.359 36.364 0.00 0.00 0.00 2.83
134 141 4.342359 ACTGTCTAGTGTTAGTAGGTGGG 58.658 47.826 0.00 0.00 35.34 4.61
211 218 3.077484 AGCTATCAGTTGCCATGTGTT 57.923 42.857 0.00 0.00 0.00 3.32
252 260 0.391263 GCCCTAGCGTGCTTGTAAGT 60.391 55.000 0.00 0.00 0.00 2.24
273 281 6.120507 AGTAGATGGCAACTCTCTCTTTTT 57.879 37.500 0.00 0.00 32.60 1.94
327 342 1.093972 TGCTACATGGCAATTGTCCG 58.906 50.000 7.75 1.04 39.43 4.79
447 464 3.830178 TCCGACACTTGACCTAAGATGAA 59.170 43.478 0.00 0.00 39.76 2.57
721 793 3.948719 GGGGTTGTCTCCGTGCCA 61.949 66.667 0.00 0.00 0.00 4.92
722 794 2.668550 GGGTTGTCTCCGTGCCAC 60.669 66.667 0.00 0.00 0.00 5.01
723 795 2.110213 GGTTGTCTCCGTGCCACA 59.890 61.111 0.00 0.00 0.00 4.17
724 796 2.251642 GGTTGTCTCCGTGCCACAC 61.252 63.158 0.00 0.00 0.00 3.82
725 797 1.522806 GTTGTCTCCGTGCCACACA 60.523 57.895 0.00 0.00 33.40 3.72
726 798 1.227527 TTGTCTCCGTGCCACACAG 60.228 57.895 0.00 0.00 33.40 3.66
727 799 1.681486 TTGTCTCCGTGCCACACAGA 61.681 55.000 0.00 0.00 33.40 3.41
728 800 1.373497 GTCTCCGTGCCACACAGAG 60.373 63.158 4.87 4.87 39.46 3.35
729 801 2.740055 CTCCGTGCCACACAGAGC 60.740 66.667 0.00 0.00 33.13 4.09
730 802 4.662961 TCCGTGCCACACAGAGCG 62.663 66.667 0.00 0.00 33.40 5.03
731 803 4.969196 CCGTGCCACACAGAGCGT 62.969 66.667 0.00 0.00 33.40 5.07
739 811 2.049526 CACAGAGCGTGCGGTACA 60.050 61.111 0.00 0.00 39.19 2.90
740 812 1.663388 CACAGAGCGTGCGGTACAA 60.663 57.895 0.00 0.00 39.19 2.41
741 813 1.663702 ACAGAGCGTGCGGTACAAC 60.664 57.895 0.00 0.00 0.00 3.32
742 814 2.048503 AGAGCGTGCGGTACAACC 60.049 61.111 0.00 0.00 34.05 3.77
743 815 2.356553 GAGCGTGCGGTACAACCA 60.357 61.111 0.00 0.00 38.47 3.67
744 816 2.663852 AGCGTGCGGTACAACCAC 60.664 61.111 0.00 0.00 38.47 4.16
745 817 3.719144 GCGTGCGGTACAACCACC 61.719 66.667 0.00 0.00 38.47 4.61
746 818 3.045492 CGTGCGGTACAACCACCC 61.045 66.667 0.00 0.00 38.47 4.61
747 819 3.045492 GTGCGGTACAACCACCCG 61.045 66.667 0.00 0.00 44.46 5.28
748 820 3.232483 TGCGGTACAACCACCCGA 61.232 61.111 0.85 0.00 44.41 5.14
749 821 2.266689 GCGGTACAACCACCCGAT 59.733 61.111 0.85 0.00 44.41 4.18
750 822 1.256361 TGCGGTACAACCACCCGATA 61.256 55.000 0.85 0.00 44.41 2.92
751 823 0.807275 GCGGTACAACCACCCGATAC 60.807 60.000 0.85 0.00 44.41 2.24
752 824 0.531657 CGGTACAACCACCCGATACA 59.468 55.000 0.00 0.00 44.41 2.29
753 825 1.736696 CGGTACAACCACCCGATACAC 60.737 57.143 0.00 0.00 44.41 2.90
754 826 1.405933 GGTACAACCACCCGATACACC 60.406 57.143 0.00 0.00 38.42 4.16
755 827 1.275856 GTACAACCACCCGATACACCA 59.724 52.381 0.00 0.00 0.00 4.17
756 828 0.035739 ACAACCACCCGATACACCAC 59.964 55.000 0.00 0.00 0.00 4.16
757 829 0.035598 CAACCACCCGATACACCACA 59.964 55.000 0.00 0.00 0.00 4.17
758 830 0.035739 AACCACCCGATACACCACAC 59.964 55.000 0.00 0.00 0.00 3.82
759 831 1.122632 ACCACCCGATACACCACACA 61.123 55.000 0.00 0.00 0.00 3.72
760 832 0.672401 CCACCCGATACACCACACAC 60.672 60.000 0.00 0.00 0.00 3.82
761 833 1.011968 CACCCGATACACCACACACG 61.012 60.000 0.00 0.00 0.00 4.49
762 834 1.290955 CCCGATACACCACACACGT 59.709 57.895 0.00 0.00 0.00 4.49
763 835 1.011968 CCCGATACACCACACACGTG 61.012 60.000 15.48 15.48 43.21 4.49
773 845 0.438445 CACACACGTGGCAGTTATCG 59.562 55.000 21.57 0.11 39.64 2.92
774 846 0.669318 ACACACGTGGCAGTTATCGG 60.669 55.000 21.57 0.00 34.19 4.18
775 847 1.740296 ACACGTGGCAGTTATCGGC 60.740 57.895 21.57 0.00 0.00 5.54
776 848 2.508439 ACGTGGCAGTTATCGGCG 60.508 61.111 0.00 0.00 35.70 6.46
777 849 2.508439 CGTGGCAGTTATCGGCGT 60.508 61.111 6.85 0.00 35.70 5.68
778 850 2.514013 CGTGGCAGTTATCGGCGTC 61.514 63.158 6.85 0.00 35.70 5.19
836 908 4.018779 TCCAAGGAAAAATCGACACCCTAT 60.019 41.667 0.00 0.00 0.00 2.57
873 958 1.602327 GCCCCGTCCGTCCCTATATC 61.602 65.000 0.00 0.00 0.00 1.63
882 967 1.982395 TCCCTATATCCGGCCGCAG 60.982 63.158 22.85 7.49 0.00 5.18
884 969 2.650116 CCTATATCCGGCCGCAGCT 61.650 63.158 22.85 6.69 39.73 4.24
885 970 1.293498 CTATATCCGGCCGCAGCTT 59.707 57.895 22.85 5.28 39.73 3.74
1189 1307 2.354773 CTCGTATCCTTCCCGCGC 60.355 66.667 0.00 0.00 0.00 6.86
1194 1312 2.205152 TATCCTTCCCGCGCTACCC 61.205 63.158 5.56 0.00 0.00 3.69
1327 1448 1.869754 CGATCTGGTTCGCCGATTGAT 60.870 52.381 0.00 0.00 41.18 2.57
1340 1461 2.224281 CCGATTGATGAGGATTCGGGAA 60.224 50.000 1.85 0.00 44.24 3.97
1414 1537 0.743701 CTGGCTCGATCTGCTGCTTT 60.744 55.000 0.00 0.00 0.00 3.51
1460 1583 2.382882 TGACTCTGATCTGGTAGCCTG 58.617 52.381 0.00 0.00 0.00 4.85
1582 1713 1.510776 CGGTAGCCGTGGTAAAAACA 58.489 50.000 0.00 0.00 42.73 2.83
1601 1732 7.951706 AAAACATGAAATTTTTGCACTTTCG 57.048 28.000 0.00 0.00 32.75 3.46
1647 1791 1.127567 TGTGAACTGAGGAGGGGTGG 61.128 60.000 0.00 0.00 0.00 4.61
1663 1807 3.447586 GGGGTGGGAATTTAGAAAGCTTC 59.552 47.826 0.00 0.00 0.00 3.86
1725 1876 3.560068 CGCTGGGTTGGTTATAATCAGTC 59.440 47.826 0.00 0.00 0.00 3.51
1737 1888 6.656693 GGTTATAATCAGTCATAATGCCTGCT 59.343 38.462 0.00 0.00 0.00 4.24
1753 1904 3.668447 CCTGCTCTGTGCTAAGAAAGAA 58.332 45.455 3.20 0.00 43.37 2.52
1783 1935 5.178252 CAGAGTGACCATTGAACTGTTACTG 59.822 44.000 0.00 0.00 30.10 2.74
1885 2055 2.290705 GGGTATGTTTGGTGTGCCTAGT 60.291 50.000 0.00 0.00 35.27 2.57
1889 2059 4.634012 ATGTTTGGTGTGCCTAGTCTAA 57.366 40.909 0.00 0.00 35.27 2.10
1917 2087 8.271458 CCTACCAAATATTTTAGGCCCAAAAAT 58.729 33.333 22.93 22.93 39.31 1.82
1929 2099 1.608801 CCCAAAAATCTGGCAAGCCAC 60.609 52.381 10.24 0.00 41.89 5.01
1931 2101 2.562298 CCAAAAATCTGGCAAGCCACTA 59.438 45.455 10.24 1.55 41.89 2.74
1932 2102 3.196254 CCAAAAATCTGGCAAGCCACTAT 59.804 43.478 10.24 4.06 41.89 2.12
1940 2110 1.176527 GCAAGCCACTATTTGCCAGA 58.823 50.000 0.00 0.00 42.88 3.86
1941 2111 1.135286 GCAAGCCACTATTTGCCAGAC 60.135 52.381 0.00 0.00 42.88 3.51
1942 2112 2.161855 CAAGCCACTATTTGCCAGACA 58.838 47.619 0.00 0.00 0.00 3.41
1943 2113 2.557924 CAAGCCACTATTTGCCAGACAA 59.442 45.455 0.00 0.00 36.13 3.18
1944 2114 3.091633 AGCCACTATTTGCCAGACAAT 57.908 42.857 0.00 0.00 38.31 2.71
1945 2115 3.019564 AGCCACTATTTGCCAGACAATC 58.980 45.455 0.00 0.00 38.31 2.67
1946 2116 2.754552 GCCACTATTTGCCAGACAATCA 59.245 45.455 0.00 0.00 38.31 2.57
1947 2117 3.382546 GCCACTATTTGCCAGACAATCAT 59.617 43.478 0.00 0.00 38.31 2.45
1948 2118 4.580167 GCCACTATTTGCCAGACAATCATA 59.420 41.667 0.00 0.00 38.31 2.15
1949 2119 5.278169 GCCACTATTTGCCAGACAATCATAG 60.278 44.000 0.00 0.00 38.31 2.23
1950 2120 5.240183 CCACTATTTGCCAGACAATCATAGG 59.760 44.000 0.00 0.00 38.31 2.57
1951 2121 4.823989 ACTATTTGCCAGACAATCATAGGC 59.176 41.667 0.00 0.00 45.41 3.93
1952 2122 3.370840 TTTGCCAGACAATCATAGGCT 57.629 42.857 0.00 0.00 45.42 4.58
1953 2123 3.370840 TTGCCAGACAATCATAGGCTT 57.629 42.857 0.00 0.00 45.42 4.35
1954 2124 2.923121 TGCCAGACAATCATAGGCTTC 58.077 47.619 0.00 0.00 45.42 3.86
1955 2125 2.225467 GCCAGACAATCATAGGCTTCC 58.775 52.381 0.00 0.00 42.01 3.46
1956 2126 2.421952 GCCAGACAATCATAGGCTTCCA 60.422 50.000 0.00 0.00 42.01 3.53
1957 2127 3.889815 CCAGACAATCATAGGCTTCCAA 58.110 45.455 0.00 0.00 0.00 3.53
1958 2128 4.467769 CCAGACAATCATAGGCTTCCAAT 58.532 43.478 0.00 0.00 0.00 3.16
1959 2129 4.891756 CCAGACAATCATAGGCTTCCAATT 59.108 41.667 0.00 0.00 0.00 2.32
1960 2130 5.361857 CCAGACAATCATAGGCTTCCAATTT 59.638 40.000 0.00 0.00 0.00 1.82
1961 2131 6.127253 CCAGACAATCATAGGCTTCCAATTTT 60.127 38.462 0.00 0.00 0.00 1.82
1962 2132 6.755141 CAGACAATCATAGGCTTCCAATTTTG 59.245 38.462 0.00 0.00 0.00 2.44
1963 2133 5.422145 ACAATCATAGGCTTCCAATTTTGC 58.578 37.500 0.00 0.00 0.00 3.68
1964 2134 5.046448 ACAATCATAGGCTTCCAATTTTGCA 60.046 36.000 0.00 0.00 0.00 4.08
1965 2135 4.454728 TCATAGGCTTCCAATTTTGCAC 57.545 40.909 0.00 0.00 0.00 4.57
1966 2136 3.195396 TCATAGGCTTCCAATTTTGCACC 59.805 43.478 0.00 0.00 0.00 5.01
1967 2137 1.422531 AGGCTTCCAATTTTGCACCA 58.577 45.000 0.00 0.00 0.00 4.17
1968 2138 1.767681 AGGCTTCCAATTTTGCACCAA 59.232 42.857 0.00 0.00 0.00 3.67
1969 2139 1.872952 GGCTTCCAATTTTGCACCAAC 59.127 47.619 0.00 0.00 0.00 3.77
1970 2140 2.485302 GGCTTCCAATTTTGCACCAACT 60.485 45.455 0.00 0.00 0.00 3.16
1971 2141 2.545106 GCTTCCAATTTTGCACCAACTG 59.455 45.455 0.00 0.00 0.00 3.16
1972 2142 3.740764 GCTTCCAATTTTGCACCAACTGA 60.741 43.478 0.00 0.00 0.00 3.41
1973 2143 4.440880 CTTCCAATTTTGCACCAACTGAA 58.559 39.130 0.00 0.00 0.00 3.02
1974 2144 3.791245 TCCAATTTTGCACCAACTGAAC 58.209 40.909 0.00 0.00 0.00 3.18
1975 2145 3.196469 TCCAATTTTGCACCAACTGAACA 59.804 39.130 0.00 0.00 0.00 3.18
1976 2146 4.128643 CCAATTTTGCACCAACTGAACAT 58.871 39.130 0.00 0.00 0.00 2.71
1977 2147 5.069648 TCCAATTTTGCACCAACTGAACATA 59.930 36.000 0.00 0.00 0.00 2.29
1978 2148 5.933463 CCAATTTTGCACCAACTGAACATAT 59.067 36.000 0.00 0.00 0.00 1.78
1979 2149 6.091169 CCAATTTTGCACCAACTGAACATATC 59.909 38.462 0.00 0.00 0.00 1.63
1980 2150 4.782019 TTTGCACCAACTGAACATATCC 57.218 40.909 0.00 0.00 0.00 2.59
2009 2179 2.176369 CATATGGTTGTTTCGCTTGCG 58.824 47.619 8.87 8.87 0.00 4.85
2019 2189 5.539582 TGTTTCGCTTGCGTTAGAATAAT 57.460 34.783 14.70 0.00 0.00 1.28
2096 2268 6.183360 TGTGCGTCTAGTTGTTATTTTTGTGT 60.183 34.615 0.00 0.00 0.00 3.72
2158 2330 8.224025 TGGGAGCTTTATACATTGGATCATAAA 58.776 33.333 0.00 0.00 0.00 1.40
2169 2341 8.394971 ACATTGGATCATAAATATCGAGCAAA 57.605 30.769 0.00 0.00 0.00 3.68
2582 2794 7.223193 TGAATTTCTTTTGCTCATTGTGTTGAG 59.777 33.333 0.00 0.00 44.87 3.02
2739 3190 7.598759 AGTATGATAAGATCCTACCGTTTGT 57.401 36.000 0.00 0.00 32.78 2.83
2779 3230 6.737720 ATCAGATGGAGTATTCAGCTAACA 57.262 37.500 0.00 0.00 39.17 2.41
3283 3806 7.148137 CCCACCACATTACTTATGTTTTAGTCC 60.148 40.741 0.00 0.00 45.19 3.85
3711 4238 2.443255 ACATTGAACCCTGGTCTCTTGT 59.557 45.455 0.00 0.00 0.00 3.16
3791 4322 3.347216 TCTGAAGACAATAAAGCAGGCC 58.653 45.455 0.00 0.00 0.00 5.19
4263 4801 5.122396 CCTTGTCCTTCTTGTGTAATGCTAC 59.878 44.000 0.00 0.00 0.00 3.58
4351 4892 1.836604 TTTGGGACTTGGGCTTGCC 60.837 57.895 2.49 2.49 0.00 4.52
4474 5015 1.153086 CATGGTAGGGACAGCCAGC 60.153 63.158 0.00 0.00 37.75 4.85
4576 5117 4.154015 TGTTGTGGTATTTCTGAAGATGCG 59.846 41.667 0.00 0.00 0.00 4.73
4612 5153 7.015098 TGTTTCTGACATCTTTCTCTCTCTCTT 59.985 37.037 0.00 0.00 32.00 2.85
4613 5154 6.513806 TCTGACATCTTTCTCTCTCTCTTG 57.486 41.667 0.00 0.00 0.00 3.02
4941 5516 9.653516 TGCCCTATATTCAAATTTATTCCAAGA 57.346 29.630 0.00 0.00 0.00 3.02
5002 5582 8.618702 ACATCTCTTTGCCATCTAATAGAATG 57.381 34.615 0.00 0.00 0.00 2.67
5027 5609 8.543774 TGTTTTTGCTAAAATAAACAATCACCG 58.456 29.630 9.24 0.00 35.80 4.94
5930 6538 3.450457 CAGCTAAGACACAGGAGAAGGAT 59.550 47.826 0.00 0.00 0.00 3.24
6137 6767 1.278413 AGATGTCACAGCACAGCTCAT 59.722 47.619 0.00 0.00 38.71 2.90
6216 6848 3.247648 CCTTGTGTTCGGTAGTGAACTTG 59.752 47.826 7.97 0.00 46.59 3.16
6320 6963 8.925700 GTTACTATTTTTCCTTTTTGGCATCAG 58.074 33.333 0.00 0.00 35.26 2.90
6354 7009 3.055530 TGATTGAACTCTCTGGCCTCTTC 60.056 47.826 3.32 0.00 0.00 2.87
6385 7041 4.527038 ACCCGTCTCTCTCAATCTTTGTTA 59.473 41.667 0.00 0.00 0.00 2.41
7048 7775 3.686016 ACAGTGCCTAATTTGTACCCAG 58.314 45.455 0.00 0.00 0.00 4.45
7050 7777 4.079253 CAGTGCCTAATTTGTACCCAGTT 58.921 43.478 0.00 0.00 0.00 3.16
7064 7791 1.069049 CCCAGTTTCACCCTTTTGCTG 59.931 52.381 0.00 0.00 0.00 4.41
7071 7798 6.200854 CAGTTTCACCCTTTTGCTGTTAATTC 59.799 38.462 0.00 0.00 0.00 2.17
7072 7799 6.098266 AGTTTCACCCTTTTGCTGTTAATTCT 59.902 34.615 0.00 0.00 0.00 2.40
7090 7856 1.180029 CTGAAGCCCAAAGTCCATGG 58.820 55.000 4.97 4.97 37.71 3.66
7106 7872 0.181350 ATGGGCTCTTTGATCCGGTC 59.819 55.000 0.00 0.00 0.00 4.79
7117 7883 1.069513 TGATCCGGTCGAGTTTGTTGT 59.930 47.619 0.00 0.00 0.00 3.32
7118 7884 2.140717 GATCCGGTCGAGTTTGTTGTT 58.859 47.619 0.00 0.00 0.00 2.83
7119 7885 1.292061 TCCGGTCGAGTTTGTTGTTG 58.708 50.000 0.00 0.00 0.00 3.33
7120 7886 1.134759 TCCGGTCGAGTTTGTTGTTGA 60.135 47.619 0.00 0.00 0.00 3.18
7121 7887 1.871039 CCGGTCGAGTTTGTTGTTGAT 59.129 47.619 0.00 0.00 0.00 2.57
7122 7888 2.289547 CCGGTCGAGTTTGTTGTTGATT 59.710 45.455 0.00 0.00 0.00 2.57
7123 7889 3.495377 CCGGTCGAGTTTGTTGTTGATTA 59.505 43.478 0.00 0.00 0.00 1.75
7124 7890 4.377022 CCGGTCGAGTTTGTTGTTGATTAG 60.377 45.833 0.00 0.00 0.00 1.73
7125 7891 4.210537 CGGTCGAGTTTGTTGTTGATTAGT 59.789 41.667 0.00 0.00 0.00 2.24
7126 7892 5.611844 CGGTCGAGTTTGTTGTTGATTAGTC 60.612 44.000 0.00 0.00 0.00 2.59
7127 7893 5.235616 GGTCGAGTTTGTTGTTGATTAGTCA 59.764 40.000 0.00 0.00 0.00 3.41
7128 7894 6.355638 GTCGAGTTTGTTGTTGATTAGTCAG 58.644 40.000 0.00 0.00 35.39 3.51
7129 7895 6.200286 GTCGAGTTTGTTGTTGATTAGTCAGA 59.800 38.462 0.00 0.00 35.39 3.27
7130 7896 6.200286 TCGAGTTTGTTGTTGATTAGTCAGAC 59.800 38.462 0.00 0.00 35.39 3.51
7131 7897 6.287107 AGTTTGTTGTTGATTAGTCAGACG 57.713 37.500 0.00 0.00 35.39 4.18
7132 7898 5.236478 AGTTTGTTGTTGATTAGTCAGACGG 59.764 40.000 0.00 0.00 35.39 4.79
7133 7899 4.594123 TGTTGTTGATTAGTCAGACGGA 57.406 40.909 0.00 0.00 35.39 4.69
7155 7952 8.067784 ACGGAATACAATCTGCATAAAATTACG 58.932 33.333 8.72 8.72 35.94 3.18
7156 7953 8.067784 CGGAATACAATCTGCATAAAATTACGT 58.932 33.333 0.00 0.00 0.00 3.57
7157 7954 9.382244 GGAATACAATCTGCATAAAATTACGTC 57.618 33.333 0.00 0.00 0.00 4.34
7161 7958 8.673626 ACAATCTGCATAAAATTACGTCTTTG 57.326 30.769 0.00 0.00 0.00 2.77
7162 7959 7.754924 ACAATCTGCATAAAATTACGTCTTTGG 59.245 33.333 0.00 0.00 0.00 3.28
7163 7960 6.811253 TCTGCATAAAATTACGTCTTTGGT 57.189 33.333 0.00 0.00 0.00 3.67
7165 7962 7.081349 TCTGCATAAAATTACGTCTTTGGTTG 58.919 34.615 0.00 0.00 0.00 3.77
7166 7963 6.971602 TGCATAAAATTACGTCTTTGGTTGA 58.028 32.000 0.00 0.00 0.00 3.18
7167 7964 7.598278 TGCATAAAATTACGTCTTTGGTTGAT 58.402 30.769 0.00 0.00 0.00 2.57
7168 7965 7.540400 TGCATAAAATTACGTCTTTGGTTGATG 59.460 33.333 0.00 0.00 0.00 3.07
7170 7967 5.446143 AAATTACGTCTTTGGTTGATGCA 57.554 34.783 0.00 0.00 0.00 3.96
7171 7968 5.446143 AATTACGTCTTTGGTTGATGCAA 57.554 34.783 0.00 0.00 0.00 4.08
7173 7970 3.078594 ACGTCTTTGGTTGATGCAAAC 57.921 42.857 0.00 0.00 0.00 2.93
7174 7971 2.425312 ACGTCTTTGGTTGATGCAAACA 59.575 40.909 3.80 0.00 39.45 2.83
7175 7972 3.068024 ACGTCTTTGGTTGATGCAAACAT 59.932 39.130 3.80 0.00 40.90 2.71
7176 7973 4.050553 CGTCTTTGGTTGATGCAAACATT 58.949 39.130 3.80 0.00 40.90 2.71
7178 7975 5.556758 CGTCTTTGGTTGATGCAAACATTTG 60.557 40.000 3.80 0.00 40.90 2.32
7179 7976 5.294060 GTCTTTGGTTGATGCAAACATTTGT 59.706 36.000 6.24 0.00 40.90 2.83
7180 7977 5.879223 TCTTTGGTTGATGCAAACATTTGTT 59.121 32.000 6.24 0.00 40.90 2.83
7181 7978 5.481200 TTGGTTGATGCAAACATTTGTTG 57.519 34.783 6.24 0.00 40.90 3.33
7186 7983 7.025963 GGTTGATGCAAACATTTGTTGAAAAA 58.974 30.769 6.24 0.00 40.24 1.94
7187 7984 7.008176 GGTTGATGCAAACATTTGTTGAAAAAC 59.992 33.333 6.24 4.50 40.24 2.43
7188 7985 7.137490 TGATGCAAACATTTGTTGAAAAACA 57.863 28.000 6.24 0.00 40.24 2.83
7189 7986 7.759465 TGATGCAAACATTTGTTGAAAAACAT 58.241 26.923 6.24 0.00 40.24 2.71
7190 7987 8.886719 TGATGCAAACATTTGTTGAAAAACATA 58.113 25.926 6.24 0.00 40.24 2.29
7191 7988 9.713740 GATGCAAACATTTGTTGAAAAACATAA 57.286 25.926 6.24 0.00 40.24 1.90
7202 7999 9.804758 TTGTTGAAAAACATAAATTTAGACGGT 57.195 25.926 3.94 0.00 32.01 4.83
7203 8000 9.804758 TGTTGAAAAACATAAATTTAGACGGTT 57.195 25.926 3.94 3.42 0.00 4.44
7219 8016 9.724839 TTTAGACGGTTAAAAGAAAATCTTGTG 57.275 29.630 0.00 0.00 36.71 3.33
7220 8017 6.735130 AGACGGTTAAAAGAAAATCTTGTGG 58.265 36.000 0.00 0.00 36.71 4.17
7221 8018 6.544564 AGACGGTTAAAAGAAAATCTTGTGGA 59.455 34.615 0.00 0.00 36.71 4.02
7222 8019 7.230712 AGACGGTTAAAAGAAAATCTTGTGGAT 59.769 33.333 0.00 0.00 36.71 3.41
7223 8020 7.368059 ACGGTTAAAAGAAAATCTTGTGGATC 58.632 34.615 0.00 0.00 36.71 3.36
7224 8021 7.230712 ACGGTTAAAAGAAAATCTTGTGGATCT 59.769 33.333 0.00 0.00 36.71 2.75
7225 8022 8.082242 CGGTTAAAAGAAAATCTTGTGGATCTT 58.918 33.333 0.00 0.00 36.71 2.40
7231 8028 9.799106 AAAGAAAATCTTGTGGATCTTAAGAGA 57.201 29.630 11.53 1.19 36.71 3.10
7232 8029 9.972106 AAGAAAATCTTGTGGATCTTAAGAGAT 57.028 29.630 11.53 3.56 39.15 2.75
7241 8038 9.618890 TTGTGGATCTTAAGAGATAATCTTTGG 57.381 33.333 11.53 0.00 46.49 3.28
7242 8039 8.992349 TGTGGATCTTAAGAGATAATCTTTGGA 58.008 33.333 11.53 0.00 46.49 3.53
7243 8040 9.487790 GTGGATCTTAAGAGATAATCTTTGGAG 57.512 37.037 11.53 0.00 46.49 3.86
7244 8041 9.439461 TGGATCTTAAGAGATAATCTTTGGAGA 57.561 33.333 11.53 0.00 46.49 3.71
7248 8045 9.273137 TCTTAAGAGATAATCTTTGGAGAAGGT 57.727 33.333 0.00 0.00 46.49 3.50
7251 8048 8.616799 AAGAGATAATCTTTGGAGAAGGTAGT 57.383 34.615 0.00 0.00 46.49 2.73
7252 8049 8.017418 AGAGATAATCTTTGGAGAAGGTAGTG 57.983 38.462 0.00 0.00 32.99 2.74
7253 8050 7.621683 AGAGATAATCTTTGGAGAAGGTAGTGT 59.378 37.037 0.00 0.00 32.99 3.55
7254 8051 7.560368 AGATAATCTTTGGAGAAGGTAGTGTG 58.440 38.462 0.00 0.00 35.07 3.82
7255 8052 4.559862 ATCTTTGGAGAAGGTAGTGTGG 57.440 45.455 0.00 0.00 35.07 4.17
7256 8053 2.038557 TCTTTGGAGAAGGTAGTGTGGC 59.961 50.000 0.00 0.00 0.00 5.01
7257 8054 1.729586 TTGGAGAAGGTAGTGTGGCT 58.270 50.000 0.00 0.00 0.00 4.75
7258 8055 1.729586 TGGAGAAGGTAGTGTGGCTT 58.270 50.000 0.00 0.00 0.00 4.35
7259 8056 2.897350 TGGAGAAGGTAGTGTGGCTTA 58.103 47.619 0.00 0.00 0.00 3.09
7260 8057 2.565834 TGGAGAAGGTAGTGTGGCTTAC 59.434 50.000 0.00 0.00 0.00 2.34
7261 8058 2.832733 GGAGAAGGTAGTGTGGCTTACT 59.167 50.000 0.33 0.33 0.00 2.24
7262 8059 3.119065 GGAGAAGGTAGTGTGGCTTACTC 60.119 52.174 0.00 0.00 0.00 2.59
7263 8060 3.764972 GAGAAGGTAGTGTGGCTTACTCT 59.235 47.826 0.00 0.00 37.01 3.24
7264 8061 3.511934 AGAAGGTAGTGTGGCTTACTCTG 59.488 47.826 6.52 0.00 35.03 3.35
7265 8062 2.890814 AGGTAGTGTGGCTTACTCTGT 58.109 47.619 6.52 0.00 35.03 3.41
7266 8063 4.043608 AGGTAGTGTGGCTTACTCTGTA 57.956 45.455 6.52 0.00 35.03 2.74
7267 8064 4.017808 AGGTAGTGTGGCTTACTCTGTAG 58.982 47.826 6.52 0.00 35.03 2.74
7268 8065 3.130693 GGTAGTGTGGCTTACTCTGTAGG 59.869 52.174 6.52 0.00 35.03 3.18
7269 8066 2.890814 AGTGTGGCTTACTCTGTAGGT 58.109 47.619 0.00 0.00 32.21 3.08
7270 8067 4.043608 AGTGTGGCTTACTCTGTAGGTA 57.956 45.455 0.00 0.00 32.21 3.08
7271 8068 3.762823 AGTGTGGCTTACTCTGTAGGTAC 59.237 47.826 0.00 0.00 32.21 3.34
7272 8069 3.508793 GTGTGGCTTACTCTGTAGGTACA 59.491 47.826 0.00 0.00 34.56 2.90
7273 8070 3.508793 TGTGGCTTACTCTGTAGGTACAC 59.491 47.826 0.00 0.00 31.93 2.90
7274 8071 3.508793 GTGGCTTACTCTGTAGGTACACA 59.491 47.826 0.00 0.00 31.93 3.72
7275 8072 4.159879 GTGGCTTACTCTGTAGGTACACAT 59.840 45.833 0.00 0.00 31.93 3.21
7276 8073 4.159693 TGGCTTACTCTGTAGGTACACATG 59.840 45.833 0.00 0.00 31.93 3.21
7277 8074 4.159879 GGCTTACTCTGTAGGTACACATGT 59.840 45.833 0.00 0.00 31.93 3.21
7278 8075 5.337330 GGCTTACTCTGTAGGTACACATGTT 60.337 44.000 0.00 0.00 31.93 2.71
7279 8076 6.164176 GCTTACTCTGTAGGTACACATGTTT 58.836 40.000 0.00 0.00 31.93 2.83
7280 8077 7.318141 GCTTACTCTGTAGGTACACATGTTTA 58.682 38.462 0.00 0.00 31.93 2.01
7281 8078 7.980099 GCTTACTCTGTAGGTACACATGTTTAT 59.020 37.037 0.00 0.00 31.93 1.40
7343 8140 9.915629 TTTTGCGGAAATATAGTTTTACACATT 57.084 25.926 1.94 0.00 0.00 2.71
7373 8170 1.547820 TGCAGACCAAAAGTTTGTGCA 59.452 42.857 13.47 13.47 41.96 4.57
7374 8171 2.168106 TGCAGACCAAAAGTTTGTGCAT 59.832 40.909 13.47 0.00 40.46 3.96
7375 8172 2.540931 GCAGACCAAAAGTTTGTGCATG 59.459 45.455 11.05 0.00 37.52 4.06
7376 8173 2.540931 CAGACCAAAAGTTTGTGCATGC 59.459 45.455 11.82 11.82 36.45 4.06
7377 8174 2.168106 AGACCAAAAGTTTGTGCATGCA 59.832 40.909 18.46 18.46 36.45 3.96
7378 8175 2.540931 GACCAAAAGTTTGTGCATGCAG 59.459 45.455 23.41 7.71 36.45 4.41
7380 8177 3.181463 ACCAAAAGTTTGTGCATGCAGAT 60.181 39.130 23.41 1.26 36.45 2.90
7381 8178 3.185594 CCAAAAGTTTGTGCATGCAGATG 59.814 43.478 23.41 13.57 36.45 2.90
7447 8328 2.413310 TGCAGATGACACATGCAGAT 57.587 45.000 11.37 0.00 44.56 2.90
7448 8329 2.718563 TGCAGATGACACATGCAGATT 58.281 42.857 11.37 0.00 44.56 2.40
7449 8330 3.086282 TGCAGATGACACATGCAGATTT 58.914 40.909 11.37 0.00 44.56 2.17
7450 8331 3.508402 TGCAGATGACACATGCAGATTTT 59.492 39.130 11.37 0.00 44.56 1.82
7451 8332 4.021807 TGCAGATGACACATGCAGATTTTT 60.022 37.500 11.37 0.00 44.56 1.94
7598 8480 8.868522 AGAAATATCCAGATTCTTTTGACACA 57.131 30.769 0.00 0.00 29.35 3.72
7599 8481 8.734386 AGAAATATCCAGATTCTTTTGACACAC 58.266 33.333 0.00 0.00 29.35 3.82
7600 8482 8.641498 AAATATCCAGATTCTTTTGACACACT 57.359 30.769 0.00 0.00 0.00 3.55
7601 8483 8.641498 AATATCCAGATTCTTTTGACACACTT 57.359 30.769 0.00 0.00 0.00 3.16
7602 8484 6.966534 ATCCAGATTCTTTTGACACACTTT 57.033 33.333 0.00 0.00 0.00 2.66
7603 8485 9.739276 ATATCCAGATTCTTTTGACACACTTTA 57.261 29.630 0.00 0.00 0.00 1.85
7604 8486 8.641498 ATCCAGATTCTTTTGACACACTTTAT 57.359 30.769 0.00 0.00 0.00 1.40
7605 8487 7.874940 TCCAGATTCTTTTGACACACTTTATG 58.125 34.615 0.00 0.00 0.00 1.90
7606 8488 7.719193 TCCAGATTCTTTTGACACACTTTATGA 59.281 33.333 0.00 0.00 0.00 2.15
7607 8489 7.805071 CCAGATTCTTTTGACACACTTTATGAC 59.195 37.037 0.00 0.00 0.00 3.06
7608 8490 7.531871 CAGATTCTTTTGACACACTTTATGACG 59.468 37.037 0.00 0.00 0.00 4.35
7609 8491 5.666969 TCTTTTGACACACTTTATGACGG 57.333 39.130 0.00 0.00 0.00 4.79
7610 8492 5.361427 TCTTTTGACACACTTTATGACGGA 58.639 37.500 0.00 0.00 0.00 4.69
7611 8493 5.995282 TCTTTTGACACACTTTATGACGGAT 59.005 36.000 0.00 0.00 0.00 4.18
7612 8494 6.485313 TCTTTTGACACACTTTATGACGGATT 59.515 34.615 0.00 0.00 0.00 3.01
7613 8495 6.627395 TTTGACACACTTTATGACGGATTT 57.373 33.333 0.00 0.00 0.00 2.17
7614 8496 5.605564 TGACACACTTTATGACGGATTTG 57.394 39.130 0.00 0.00 0.00 2.32
7615 8497 5.060506 TGACACACTTTATGACGGATTTGT 58.939 37.500 0.00 0.00 0.00 2.83
7616 8498 5.178623 TGACACACTTTATGACGGATTTGTC 59.821 40.000 0.00 0.00 39.37 3.18
7617 8499 4.454504 ACACACTTTATGACGGATTTGTCC 59.545 41.667 0.00 0.00 38.11 4.02
7618 8500 4.695455 CACACTTTATGACGGATTTGTCCT 59.305 41.667 0.00 0.00 38.11 3.85
7619 8501 5.181245 CACACTTTATGACGGATTTGTCCTT 59.819 40.000 0.00 0.00 38.11 3.36
7620 8502 5.768164 ACACTTTATGACGGATTTGTCCTTT 59.232 36.000 0.00 0.00 38.11 3.11
7621 8503 6.264518 ACACTTTATGACGGATTTGTCCTTTT 59.735 34.615 0.00 0.00 38.11 2.27
7622 8504 7.145323 CACTTTATGACGGATTTGTCCTTTTT 58.855 34.615 0.00 0.00 38.11 1.94
7623 8505 8.293867 CACTTTATGACGGATTTGTCCTTTTTA 58.706 33.333 0.00 0.00 38.11 1.52
7624 8506 9.020731 ACTTTATGACGGATTTGTCCTTTTTAT 57.979 29.630 0.00 0.00 38.11 1.40
7625 8507 9.855021 CTTTATGACGGATTTGTCCTTTTTATT 57.145 29.630 0.00 0.00 38.11 1.40
7627 8509 9.849166 TTATGACGGATTTGTCCTTTTTATTTC 57.151 29.630 0.00 0.00 38.11 2.17
7628 8510 7.519032 TGACGGATTTGTCCTTTTTATTTCT 57.481 32.000 0.00 0.00 38.11 2.52
7629 8511 7.590279 TGACGGATTTGTCCTTTTTATTTCTC 58.410 34.615 0.00 0.00 38.11 2.87
7630 8512 7.229707 TGACGGATTTGTCCTTTTTATTTCTCA 59.770 33.333 0.00 0.00 38.11 3.27
7631 8513 7.593825 ACGGATTTGTCCTTTTTATTTCTCAG 58.406 34.615 0.00 0.00 0.00 3.35
7632 8514 7.230712 ACGGATTTGTCCTTTTTATTTCTCAGT 59.769 33.333 0.00 0.00 0.00 3.41
7633 8515 7.538678 CGGATTTGTCCTTTTTATTTCTCAGTG 59.461 37.037 0.00 0.00 0.00 3.66
7634 8516 8.360390 GGATTTGTCCTTTTTATTTCTCAGTGT 58.640 33.333 0.00 0.00 0.00 3.55
7635 8517 9.185192 GATTTGTCCTTTTTATTTCTCAGTGTG 57.815 33.333 0.00 0.00 0.00 3.82
7636 8518 7.639113 TTGTCCTTTTTATTTCTCAGTGTGT 57.361 32.000 0.00 0.00 0.00 3.72
7637 8519 8.740123 TTGTCCTTTTTATTTCTCAGTGTGTA 57.260 30.769 0.00 0.00 0.00 2.90
7638 8520 8.918202 TGTCCTTTTTATTTCTCAGTGTGTAT 57.082 30.769 0.00 0.00 0.00 2.29
7639 8521 9.349713 TGTCCTTTTTATTTCTCAGTGTGTATT 57.650 29.630 0.00 0.00 0.00 1.89
7649 8531 6.618287 TCTCAGTGTGTATTTTGAGTTTGG 57.382 37.500 0.88 0.00 38.50 3.28
7650 8532 5.530915 TCTCAGTGTGTATTTTGAGTTTGGG 59.469 40.000 0.88 0.00 38.50 4.12
7651 8533 5.197451 TCAGTGTGTATTTTGAGTTTGGGT 58.803 37.500 0.00 0.00 0.00 4.51
7652 8534 5.298276 TCAGTGTGTATTTTGAGTTTGGGTC 59.702 40.000 0.00 0.00 0.00 4.46
7653 8535 5.299279 CAGTGTGTATTTTGAGTTTGGGTCT 59.701 40.000 0.00 0.00 0.00 3.85
7654 8536 5.299279 AGTGTGTATTTTGAGTTTGGGTCTG 59.701 40.000 0.00 0.00 0.00 3.51
7655 8537 5.298276 GTGTGTATTTTGAGTTTGGGTCTGA 59.702 40.000 0.00 0.00 0.00 3.27
7656 8538 6.016276 GTGTGTATTTTGAGTTTGGGTCTGAT 60.016 38.462 0.00 0.00 0.00 2.90
7657 8539 6.549364 TGTGTATTTTGAGTTTGGGTCTGATT 59.451 34.615 0.00 0.00 0.00 2.57
7658 8540 7.084486 GTGTATTTTGAGTTTGGGTCTGATTC 58.916 38.462 0.00 0.00 0.00 2.52
7659 8541 7.004086 TGTATTTTGAGTTTGGGTCTGATTCT 58.996 34.615 0.00 0.00 0.00 2.40
7660 8542 6.983906 ATTTTGAGTTTGGGTCTGATTCTT 57.016 33.333 0.00 0.00 0.00 2.52
7661 8543 6.790232 TTTTGAGTTTGGGTCTGATTCTTT 57.210 33.333 0.00 0.00 0.00 2.52
7662 8544 6.790232 TTTGAGTTTGGGTCTGATTCTTTT 57.210 33.333 0.00 0.00 0.00 2.27
7663 8545 7.889873 TTTGAGTTTGGGTCTGATTCTTTTA 57.110 32.000 0.00 0.00 0.00 1.52
7664 8546 7.510549 TTGAGTTTGGGTCTGATTCTTTTAG 57.489 36.000 0.00 0.00 0.00 1.85
7665 8547 6.003950 TGAGTTTGGGTCTGATTCTTTTAGG 58.996 40.000 0.00 0.00 0.00 2.69
7666 8548 6.183361 TGAGTTTGGGTCTGATTCTTTTAGGA 60.183 38.462 0.00 0.00 0.00 2.94
7667 8549 6.241645 AGTTTGGGTCTGATTCTTTTAGGAG 58.758 40.000 0.00 0.00 0.00 3.69
7668 8550 5.843019 TTGGGTCTGATTCTTTTAGGAGT 57.157 39.130 0.00 0.00 0.00 3.85
7669 8551 5.843019 TGGGTCTGATTCTTTTAGGAGTT 57.157 39.130 0.00 0.00 0.00 3.01
7670 8552 5.560724 TGGGTCTGATTCTTTTAGGAGTTG 58.439 41.667 0.00 0.00 0.00 3.16
7671 8553 5.073144 TGGGTCTGATTCTTTTAGGAGTTGT 59.927 40.000 0.00 0.00 0.00 3.32
7672 8554 6.271391 TGGGTCTGATTCTTTTAGGAGTTGTA 59.729 38.462 0.00 0.00 0.00 2.41
7673 8555 7.166167 GGGTCTGATTCTTTTAGGAGTTGTAA 58.834 38.462 0.00 0.00 0.00 2.41
7674 8556 7.664318 GGGTCTGATTCTTTTAGGAGTTGTAAA 59.336 37.037 0.00 0.00 0.00 2.01
7691 8573 5.690997 TGTAAACACTTGTGTTGTGAACA 57.309 34.783 18.21 15.98 38.65 3.18
7692 8574 6.260870 TGTAAACACTTGTGTTGTGAACAT 57.739 33.333 18.21 5.22 44.35 2.71
7693 8575 6.318628 TGTAAACACTTGTGTTGTGAACATC 58.681 36.000 18.21 5.68 44.35 3.06
7694 8576 4.370364 AACACTTGTGTTGTGAACATCC 57.630 40.909 17.02 0.00 44.35 3.51
7695 8577 3.351740 ACACTTGTGTTGTGAACATCCA 58.648 40.909 0.00 0.00 44.35 3.41
7696 8578 3.128589 ACACTTGTGTTGTGAACATCCAC 59.871 43.478 0.00 6.76 44.35 4.02
7697 8579 2.354510 ACTTGTGTTGTGAACATCCACG 59.645 45.455 0.00 0.00 44.35 4.94
7698 8580 2.317530 TGTGTTGTGAACATCCACGA 57.682 45.000 0.00 0.00 44.35 4.35
7699 8581 2.844946 TGTGTTGTGAACATCCACGAT 58.155 42.857 0.00 0.00 44.35 3.73
7700 8582 3.210227 TGTGTTGTGAACATCCACGATT 58.790 40.909 0.00 0.00 44.35 3.34
7701 8583 3.003171 TGTGTTGTGAACATCCACGATTG 59.997 43.478 0.00 0.00 44.35 2.67
7702 8584 3.003275 GTGTTGTGAACATCCACGATTGT 59.997 43.478 0.00 0.00 44.35 2.71
7703 8585 3.629855 TGTTGTGAACATCCACGATTGTT 59.370 39.130 0.00 0.00 39.80 2.83
7704 8586 4.097135 TGTTGTGAACATCCACGATTGTTT 59.903 37.500 0.00 0.00 39.80 2.83
7705 8587 4.909696 TGTGAACATCCACGATTGTTTT 57.090 36.364 0.00 0.00 39.80 2.43
7706 8588 5.255710 TGTGAACATCCACGATTGTTTTT 57.744 34.783 0.00 0.00 39.80 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 75 5.291293 ACAGACGTGGCAATAAATAACAC 57.709 39.130 0.00 0.00 0.00 3.32
77 81 4.355437 CAACAAACAGACGTGGCAATAAA 58.645 39.130 0.00 0.00 0.00 1.40
80 85 1.535860 GCAACAAACAGACGTGGCAAT 60.536 47.619 0.00 0.00 0.00 3.56
98 105 1.072173 AGACAGTTGCCATGTAGTGCA 59.928 47.619 0.00 0.00 35.27 4.57
134 141 5.290386 CGATGGTGGTATCTTTAGGAGTTC 58.710 45.833 0.00 0.00 0.00 3.01
211 218 1.342819 GTTGCCATGTACCCTGCAAAA 59.657 47.619 12.71 0.00 44.44 2.44
305 320 3.278574 GGACAATTGCCATGTAGCACTA 58.721 45.455 5.05 0.00 43.97 2.74
321 336 1.619827 CCACCTACTAACACCGGACAA 59.380 52.381 9.46 0.00 0.00 3.18
327 342 1.612462 GGGTTGCCACCTACTAACACC 60.612 57.143 6.95 0.00 43.65 4.16
447 464 1.473258 TGGTTGCTCAACTGCAGTTT 58.527 45.000 29.23 12.23 44.27 2.66
704 776 3.948719 TGGCACGGAGACAACCCC 61.949 66.667 0.00 0.00 0.00 4.95
705 777 2.668550 GTGGCACGGAGACAACCC 60.669 66.667 0.00 0.00 0.00 4.11
706 778 2.110213 TGTGGCACGGAGACAACC 59.890 61.111 13.77 0.00 0.00 3.77
707 779 1.498865 CTGTGTGGCACGGAGACAAC 61.499 60.000 13.77 4.08 42.79 3.32
708 780 1.227527 CTGTGTGGCACGGAGACAA 60.228 57.895 13.77 0.00 42.79 3.18
709 781 2.131067 TCTGTGTGGCACGGAGACA 61.131 57.895 13.77 10.55 43.73 3.41
710 782 2.734591 TCTGTGTGGCACGGAGAC 59.265 61.111 13.77 6.00 43.73 3.36
713 785 4.662961 CGCTCTGTGTGGCACGGA 62.663 66.667 13.77 10.00 45.99 4.69
714 786 4.969196 ACGCTCTGTGTGGCACGG 62.969 66.667 13.77 5.96 41.65 4.94
715 787 3.705638 CACGCTCTGTGTGGCACG 61.706 66.667 13.77 1.10 43.88 5.34
723 795 1.663702 GTTGTACCGCACGCTCTGT 60.664 57.895 0.00 0.00 0.00 3.41
724 796 2.380410 GGTTGTACCGCACGCTCTG 61.380 63.158 0.00 0.00 0.00 3.35
725 797 2.048503 GGTTGTACCGCACGCTCT 60.049 61.111 0.00 0.00 0.00 4.09
726 798 2.356553 TGGTTGTACCGCACGCTC 60.357 61.111 0.00 0.00 42.58 5.03
734 806 1.405933 GGTGTATCGGGTGGTTGTACC 60.406 57.143 0.00 0.00 40.10 3.34
735 807 1.275856 TGGTGTATCGGGTGGTTGTAC 59.724 52.381 0.00 0.00 0.00 2.90
736 808 1.275856 GTGGTGTATCGGGTGGTTGTA 59.724 52.381 0.00 0.00 0.00 2.41
737 809 0.035739 GTGGTGTATCGGGTGGTTGT 59.964 55.000 0.00 0.00 0.00 3.32
738 810 0.035598 TGTGGTGTATCGGGTGGTTG 59.964 55.000 0.00 0.00 0.00 3.77
739 811 0.035739 GTGTGGTGTATCGGGTGGTT 59.964 55.000 0.00 0.00 0.00 3.67
740 812 1.122632 TGTGTGGTGTATCGGGTGGT 61.123 55.000 0.00 0.00 0.00 4.16
741 813 0.672401 GTGTGTGGTGTATCGGGTGG 60.672 60.000 0.00 0.00 0.00 4.61
742 814 1.011968 CGTGTGTGGTGTATCGGGTG 61.012 60.000 0.00 0.00 0.00 4.61
743 815 1.290955 CGTGTGTGGTGTATCGGGT 59.709 57.895 0.00 0.00 0.00 5.28
744 816 1.011968 CACGTGTGTGGTGTATCGGG 61.012 60.000 7.58 0.00 42.59 5.14
745 817 2.441023 CACGTGTGTGGTGTATCGG 58.559 57.895 7.58 0.00 42.59 4.18
754 826 0.438445 CGATAACTGCCACGTGTGTG 59.562 55.000 15.65 6.11 46.00 3.82
755 827 0.669318 CCGATAACTGCCACGTGTGT 60.669 55.000 15.65 7.51 0.00 3.72
756 828 1.966493 GCCGATAACTGCCACGTGTG 61.966 60.000 15.65 7.24 0.00 3.82
757 829 1.740296 GCCGATAACTGCCACGTGT 60.740 57.895 15.65 0.00 0.00 4.49
758 830 2.798501 CGCCGATAACTGCCACGTG 61.799 63.158 9.08 9.08 0.00 4.49
759 831 2.508439 CGCCGATAACTGCCACGT 60.508 61.111 0.00 0.00 0.00 4.49
760 832 2.508439 ACGCCGATAACTGCCACG 60.508 61.111 0.00 0.00 0.00 4.94
761 833 0.739813 AAGACGCCGATAACTGCCAC 60.740 55.000 0.00 0.00 0.00 5.01
762 834 0.036765 AAAGACGCCGATAACTGCCA 60.037 50.000 0.00 0.00 0.00 4.92
763 835 1.084289 AAAAGACGCCGATAACTGCC 58.916 50.000 0.00 0.00 0.00 4.85
764 836 4.330740 TTTAAAAGACGCCGATAACTGC 57.669 40.909 0.00 0.00 0.00 4.40
836 908 0.531974 GCGATGGGTCCGATTTAGCA 60.532 55.000 0.00 0.00 0.00 3.49
1288 1409 2.125202 GAAACACTGAAACCGCCCGG 62.125 60.000 4.96 4.96 42.03 5.73
1289 1410 1.281656 GAAACACTGAAACCGCCCG 59.718 57.895 0.00 0.00 0.00 6.13
1290 1411 1.161563 TCGAAACACTGAAACCGCCC 61.162 55.000 0.00 0.00 0.00 6.13
1291 1412 0.872388 ATCGAAACACTGAAACCGCC 59.128 50.000 0.00 0.00 0.00 6.13
1292 1413 1.798813 AGATCGAAACACTGAAACCGC 59.201 47.619 0.00 0.00 0.00 5.68
1293 1414 2.157668 CCAGATCGAAACACTGAAACCG 59.842 50.000 11.76 0.00 34.07 4.44
1327 1448 2.821437 ACTTCTCTTCCCGAATCCTCA 58.179 47.619 0.00 0.00 0.00 3.86
1340 1461 2.170187 CAGCATCTAGGGCAACTTCTCT 59.830 50.000 9.48 0.00 0.00 3.10
1399 1522 0.644331 CACGAAAGCAGCAGATCGAG 59.356 55.000 17.93 8.87 38.59 4.04
1414 1537 2.681064 CCTACGGTTCCCCCACGA 60.681 66.667 0.00 0.00 0.00 4.35
1438 1561 3.196469 CAGGCTACCAGATCAGAGTCAAA 59.804 47.826 0.00 0.00 0.00 2.69
1442 1565 1.690845 CCCAGGCTACCAGATCAGAGT 60.691 57.143 0.00 0.00 0.00 3.24
1601 1732 1.338973 TCCTACAACTGTCGGTGACAC 59.661 52.381 0.00 0.00 37.67 3.67
1647 1791 7.875316 GAAAGTTGGAAGCTTTCTAAATTCC 57.125 36.000 6.25 0.00 44.86 3.01
1737 1888 4.100963 TGTCAGGTTCTTTCTTAGCACAGA 59.899 41.667 0.00 0.00 0.00 3.41
1753 1904 2.329267 TCAATGGTCACTCTGTCAGGT 58.671 47.619 0.00 0.00 0.00 4.00
1783 1935 4.270008 ACATGTCACCCTAAACTATTGCC 58.730 43.478 0.00 0.00 0.00 4.52
1861 2029 2.026262 AGGCACACCAAACATACCCTAG 60.026 50.000 0.00 0.00 39.06 3.02
1868 2036 4.324267 GTTAGACTAGGCACACCAAACAT 58.676 43.478 0.00 0.00 39.06 2.71
1885 2055 7.292319 GGCCTAAAATATTTGGTAGGGTTAGA 58.708 38.462 20.36 0.00 34.77 2.10
1889 2059 4.233287 TGGGCCTAAAATATTTGGTAGGGT 59.767 41.667 20.36 1.16 34.77 4.34
1917 2087 1.176527 GCAAATAGTGGCTTGCCAGA 58.823 50.000 15.31 6.61 41.69 3.86
1929 2099 5.068636 AGCCTATGATTGTCTGGCAAATAG 58.931 41.667 0.00 2.92 45.42 1.73
1931 2101 3.907221 AGCCTATGATTGTCTGGCAAAT 58.093 40.909 0.00 0.00 45.42 2.32
1932 2102 3.370840 AGCCTATGATTGTCTGGCAAA 57.629 42.857 0.00 0.00 45.42 3.68
1940 2110 5.046448 TGCAAAATTGGAAGCCTATGATTGT 60.046 36.000 0.00 0.00 0.00 2.71
1941 2111 5.292589 GTGCAAAATTGGAAGCCTATGATTG 59.707 40.000 0.00 0.00 0.00 2.67
1942 2112 5.422145 GTGCAAAATTGGAAGCCTATGATT 58.578 37.500 0.00 0.00 0.00 2.57
1943 2113 4.141869 GGTGCAAAATTGGAAGCCTATGAT 60.142 41.667 0.00 0.00 0.00 2.45
1944 2114 3.195396 GGTGCAAAATTGGAAGCCTATGA 59.805 43.478 0.00 0.00 0.00 2.15
1945 2115 3.055963 TGGTGCAAAATTGGAAGCCTATG 60.056 43.478 0.00 0.00 0.00 2.23
1946 2116 3.172339 TGGTGCAAAATTGGAAGCCTAT 58.828 40.909 0.00 0.00 0.00 2.57
1947 2117 2.603021 TGGTGCAAAATTGGAAGCCTA 58.397 42.857 0.00 0.00 0.00 3.93
1948 2118 1.422531 TGGTGCAAAATTGGAAGCCT 58.577 45.000 0.00 0.00 0.00 4.58
1949 2119 1.872952 GTTGGTGCAAAATTGGAAGCC 59.127 47.619 0.00 0.00 0.00 4.35
1950 2120 2.545106 CAGTTGGTGCAAAATTGGAAGC 59.455 45.455 0.00 0.00 0.00 3.86
1951 2121 4.057406 TCAGTTGGTGCAAAATTGGAAG 57.943 40.909 0.00 0.00 0.00 3.46
1952 2122 4.187694 GTTCAGTTGGTGCAAAATTGGAA 58.812 39.130 0.00 0.00 0.00 3.53
1953 2123 3.196469 TGTTCAGTTGGTGCAAAATTGGA 59.804 39.130 0.00 0.00 0.00 3.53
1954 2124 3.529533 TGTTCAGTTGGTGCAAAATTGG 58.470 40.909 0.00 0.00 0.00 3.16
1955 2125 6.091169 GGATATGTTCAGTTGGTGCAAAATTG 59.909 38.462 0.00 0.00 0.00 2.32
1956 2126 6.165577 GGATATGTTCAGTTGGTGCAAAATT 58.834 36.000 0.00 0.00 0.00 1.82
1957 2127 5.245751 TGGATATGTTCAGTTGGTGCAAAAT 59.754 36.000 0.00 0.00 0.00 1.82
1958 2128 4.586421 TGGATATGTTCAGTTGGTGCAAAA 59.414 37.500 0.00 0.00 0.00 2.44
1959 2129 4.148079 TGGATATGTTCAGTTGGTGCAAA 58.852 39.130 0.00 0.00 0.00 3.68
1960 2130 3.760738 TGGATATGTTCAGTTGGTGCAA 58.239 40.909 0.00 0.00 0.00 4.08
1961 2131 3.431673 TGGATATGTTCAGTTGGTGCA 57.568 42.857 0.00 0.00 0.00 4.57
1962 2132 6.639632 ATTATGGATATGTTCAGTTGGTGC 57.360 37.500 0.00 0.00 0.00 5.01
1963 2133 8.137437 GGAAATTATGGATATGTTCAGTTGGTG 58.863 37.037 0.00 0.00 0.00 4.17
1964 2134 7.838696 TGGAAATTATGGATATGTTCAGTTGGT 59.161 33.333 0.00 0.00 0.00 3.67
1965 2135 8.236585 TGGAAATTATGGATATGTTCAGTTGG 57.763 34.615 0.00 0.00 0.00 3.77
1973 2143 9.827198 ACAACCATATGGAAATTATGGATATGT 57.173 29.630 28.77 12.73 46.05 2.29
1977 2147 8.359642 CGAAACAACCATATGGAAATTATGGAT 58.640 33.333 28.77 9.40 46.05 3.41
1978 2148 7.683222 GCGAAACAACCATATGGAAATTATGGA 60.683 37.037 28.77 0.00 46.05 3.41
1980 2150 7.202526 AGCGAAACAACCATATGGAAATTATG 58.797 34.615 28.77 16.80 38.94 1.90
2041 2211 7.099666 TGCATATGAAAAGCAACGTTAAAAC 57.900 32.000 6.97 0.00 34.97 2.43
2183 2355 8.068892 TGGAAATACAAACTTTAACAACCTGT 57.931 30.769 0.00 0.00 0.00 4.00
2582 2794 3.548214 GCTGAAAGAAAAGAACCACCGAC 60.548 47.826 0.00 0.00 34.07 4.79
2779 3230 4.101119 ACACACCTACAGCAAAGAGTAACT 59.899 41.667 0.00 0.00 0.00 2.24
3095 3618 1.139058 ACAAGACAGCGAAGAACCTGT 59.861 47.619 0.00 0.00 44.43 4.00
3283 3806 6.372659 ACACAATATCTCAAGTAAGCAACAGG 59.627 38.462 0.00 0.00 0.00 4.00
3791 4322 2.494059 ACACTGTTCCTCATTTCCACG 58.506 47.619 0.00 0.00 0.00 4.94
4351 4892 0.464870 CATCTGCTGTCCCCAGAGAG 59.535 60.000 0.00 0.00 42.11 3.20
4474 5015 1.152989 GCATCTCAGCAGCCTTCTCG 61.153 60.000 0.00 0.00 0.00 4.04
4483 5024 1.861971 CATAAGCGAGCATCTCAGCA 58.138 50.000 0.00 0.00 34.41 4.41
4576 5117 2.838736 TGTCAGAAACAAGAGCTGGAC 58.161 47.619 0.00 0.00 34.03 4.02
4612 5153 4.536526 TGCCAAACCCCTGCAGCA 62.537 61.111 8.66 0.00 0.00 4.41
4613 5154 3.994853 GTGCCAAACCCCTGCAGC 61.995 66.667 8.66 0.00 35.33 5.25
4761 5336 4.211164 TGATGGATAGCTTTGTTATTCGCG 59.789 41.667 0.00 0.00 0.00 5.87
4941 5516 8.959548 TGCATAATGAACAGATCTATGTTGTTT 58.040 29.630 5.16 2.39 43.32 2.83
4976 5554 9.716531 CATTCTATTAGATGGCAAAGAGATGTA 57.283 33.333 0.00 0.00 0.00 2.29
4977 5555 8.216423 ACATTCTATTAGATGGCAAAGAGATGT 58.784 33.333 0.00 0.00 0.00 3.06
5002 5582 8.756864 TCGGTGATTGTTTATTTTAGCAAAAAC 58.243 29.630 0.00 0.00 37.41 2.43
5027 5609 5.428253 TGTAAGGTGTGGATCAAAGCTATC 58.572 41.667 0.00 0.00 28.50 2.08
5071 5670 6.335471 TCAGAACGGAAGATGTAAGTTGTA 57.665 37.500 0.00 0.00 0.00 2.41
5930 6538 2.093890 CTTACCTGCATTGCATCACCA 58.906 47.619 12.53 0.00 38.13 4.17
6186 6816 1.134340 ACCGAACACAAGGTACAGCAA 60.134 47.619 0.00 0.00 39.30 3.91
6216 6848 8.885494 AAGAAACTTCAGCTAGATATGATCAC 57.115 34.615 0.00 0.00 0.00 3.06
6354 7009 4.720649 TGAGAGAGACGGGTAAATTCAG 57.279 45.455 0.00 0.00 0.00 3.02
6931 7598 4.924305 ACAAATTATCCTTGCATGCGAT 57.076 36.364 14.09 12.14 0.00 4.58
6967 7634 0.741221 CTAGCACTCCCCGCAGTTTC 60.741 60.000 0.00 0.00 0.00 2.78
7064 7791 4.522789 TGGACTTTGGGCTTCAGAATTAAC 59.477 41.667 0.00 0.00 0.00 2.01
7071 7798 1.180029 CCATGGACTTTGGGCTTCAG 58.820 55.000 5.56 0.00 0.00 3.02
7072 7799 3.362040 CCATGGACTTTGGGCTTCA 57.638 52.632 5.56 0.00 0.00 3.02
7090 7856 0.528684 CTCGACCGGATCAAAGAGCC 60.529 60.000 9.46 0.00 34.38 4.70
7091 7857 0.173708 ACTCGACCGGATCAAAGAGC 59.826 55.000 9.46 0.00 0.00 4.09
7092 7858 2.656560 AACTCGACCGGATCAAAGAG 57.343 50.000 9.46 9.56 0.00 2.85
7106 7872 6.355638 GTCTGACTAATCAACAACAAACTCG 58.644 40.000 0.00 0.00 33.30 4.18
7117 7883 7.706607 CAGATTGTATTCCGTCTGACTAATCAA 59.293 37.037 6.21 11.05 40.30 2.57
7118 7884 7.203218 CAGATTGTATTCCGTCTGACTAATCA 58.797 38.462 6.21 4.31 40.30 2.57
7119 7885 6.144724 GCAGATTGTATTCCGTCTGACTAATC 59.855 42.308 6.21 5.05 40.30 1.75
7120 7886 5.986135 GCAGATTGTATTCCGTCTGACTAAT 59.014 40.000 6.21 8.09 40.30 1.73
7121 7887 5.105513 TGCAGATTGTATTCCGTCTGACTAA 60.106 40.000 6.21 0.80 40.30 2.24
7122 7888 4.401202 TGCAGATTGTATTCCGTCTGACTA 59.599 41.667 6.21 0.00 40.30 2.59
7123 7889 3.195610 TGCAGATTGTATTCCGTCTGACT 59.804 43.478 6.21 0.00 40.30 3.41
7124 7890 3.521560 TGCAGATTGTATTCCGTCTGAC 58.478 45.455 5.49 0.00 40.30 3.51
7125 7891 3.885724 TGCAGATTGTATTCCGTCTGA 57.114 42.857 5.49 0.00 40.30 3.27
7126 7892 6.603237 TTTATGCAGATTGTATTCCGTCTG 57.397 37.500 0.00 0.00 40.71 3.51
7127 7893 7.807977 ATTTTATGCAGATTGTATTCCGTCT 57.192 32.000 0.00 0.00 0.00 4.18
7128 7894 9.382244 GTAATTTTATGCAGATTGTATTCCGTC 57.618 33.333 0.00 0.00 0.00 4.79
7129 7895 8.067784 CGTAATTTTATGCAGATTGTATTCCGT 58.932 33.333 0.00 0.00 0.00 4.69
7130 7896 8.067784 ACGTAATTTTATGCAGATTGTATTCCG 58.932 33.333 0.00 0.00 0.00 4.30
7131 7897 9.382244 GACGTAATTTTATGCAGATTGTATTCC 57.618 33.333 0.00 0.00 0.00 3.01
7155 7952 5.294060 ACAAATGTTTGCATCAACCAAAGAC 59.706 36.000 5.44 0.00 41.79 3.01
7156 7953 5.426504 ACAAATGTTTGCATCAACCAAAGA 58.573 33.333 5.44 0.00 41.79 2.52
7157 7954 5.738118 ACAAATGTTTGCATCAACCAAAG 57.262 34.783 5.44 0.00 41.79 2.77
7159 7956 5.181009 TCAACAAATGTTTGCATCAACCAA 58.819 33.333 5.44 0.00 41.79 3.67
7161 7958 5.731599 TTCAACAAATGTTTGCATCAACC 57.268 34.783 5.44 0.00 41.79 3.77
7162 7959 7.536622 TGTTTTTCAACAAATGTTTGCATCAAC 59.463 29.630 5.44 0.00 40.10 3.18
7163 7960 7.587629 TGTTTTTCAACAAATGTTTGCATCAA 58.412 26.923 5.44 0.00 40.10 2.57
7165 7962 9.713740 TTATGTTTTTCAACAAATGTTTGCATC 57.286 25.926 5.44 0.00 46.17 3.91
7176 7973 9.804758 ACCGTCTAAATTTATGTTTTTCAACAA 57.195 25.926 0.00 0.00 46.17 2.83
7193 7990 9.724839 CACAAGATTTTCTTTTAACCGTCTAAA 57.275 29.630 0.00 0.00 33.78 1.85
7194 7991 8.347035 CCACAAGATTTTCTTTTAACCGTCTAA 58.653 33.333 0.00 0.00 33.78 2.10
7195 7992 7.716123 TCCACAAGATTTTCTTTTAACCGTCTA 59.284 33.333 0.00 0.00 33.78 2.59
7196 7993 6.544564 TCCACAAGATTTTCTTTTAACCGTCT 59.455 34.615 0.00 0.00 33.78 4.18
7197 7994 6.731164 TCCACAAGATTTTCTTTTAACCGTC 58.269 36.000 0.00 0.00 33.78 4.79
7198 7995 6.702716 TCCACAAGATTTTCTTTTAACCGT 57.297 33.333 0.00 0.00 33.78 4.83
7199 7996 7.593825 AGATCCACAAGATTTTCTTTTAACCG 58.406 34.615 0.00 0.00 33.78 4.44
7205 8002 9.799106 TCTCTTAAGATCCACAAGATTTTCTTT 57.201 29.630 5.44 0.00 33.78 2.52
7206 8003 9.972106 ATCTCTTAAGATCCACAAGATTTTCTT 57.028 29.630 5.44 0.00 37.75 2.52
7215 8012 9.618890 CCAAAGATTATCTCTTAAGATCCACAA 57.381 33.333 5.44 0.00 43.60 3.33
7216 8013 8.992349 TCCAAAGATTATCTCTTAAGATCCACA 58.008 33.333 5.44 0.00 43.60 4.17
7217 8014 9.487790 CTCCAAAGATTATCTCTTAAGATCCAC 57.512 37.037 5.44 0.00 43.60 4.02
7218 8015 9.439461 TCTCCAAAGATTATCTCTTAAGATCCA 57.561 33.333 5.44 0.00 43.60 3.41
7222 8019 9.273137 ACCTTCTCCAAAGATTATCTCTTAAGA 57.727 33.333 4.81 4.81 43.60 2.10
7225 8022 9.716556 ACTACCTTCTCCAAAGATTATCTCTTA 57.283 33.333 0.00 0.00 43.60 2.10
7226 8023 8.482128 CACTACCTTCTCCAAAGATTATCTCTT 58.518 37.037 0.00 0.00 46.44 2.85
7227 8024 7.621683 ACACTACCTTCTCCAAAGATTATCTCT 59.378 37.037 0.00 0.00 34.96 3.10
7228 8025 7.708752 CACACTACCTTCTCCAAAGATTATCTC 59.291 40.741 0.00 0.00 0.00 2.75
7229 8026 7.365117 CCACACTACCTTCTCCAAAGATTATCT 60.365 40.741 0.00 0.00 0.00 1.98
7230 8027 6.763610 CCACACTACCTTCTCCAAAGATTATC 59.236 42.308 0.00 0.00 0.00 1.75
7231 8028 6.653989 CCACACTACCTTCTCCAAAGATTAT 58.346 40.000 0.00 0.00 0.00 1.28
7232 8029 5.570844 GCCACACTACCTTCTCCAAAGATTA 60.571 44.000 0.00 0.00 0.00 1.75
7233 8030 4.807643 GCCACACTACCTTCTCCAAAGATT 60.808 45.833 0.00 0.00 0.00 2.40
7234 8031 3.307762 GCCACACTACCTTCTCCAAAGAT 60.308 47.826 0.00 0.00 0.00 2.40
7235 8032 2.038557 GCCACACTACCTTCTCCAAAGA 59.961 50.000 0.00 0.00 0.00 2.52
7236 8033 2.039084 AGCCACACTACCTTCTCCAAAG 59.961 50.000 0.00 0.00 0.00 2.77
7237 8034 2.054799 AGCCACACTACCTTCTCCAAA 58.945 47.619 0.00 0.00 0.00 3.28
7238 8035 1.729586 AGCCACACTACCTTCTCCAA 58.270 50.000 0.00 0.00 0.00 3.53
7239 8036 1.729586 AAGCCACACTACCTTCTCCA 58.270 50.000 0.00 0.00 0.00 3.86
7240 8037 2.832733 AGTAAGCCACACTACCTTCTCC 59.167 50.000 0.00 0.00 0.00 3.71
7241 8038 3.764972 AGAGTAAGCCACACTACCTTCTC 59.235 47.826 0.00 0.00 0.00 2.87
7242 8039 3.511934 CAGAGTAAGCCACACTACCTTCT 59.488 47.826 0.00 0.00 0.00 2.85
7243 8040 3.258622 ACAGAGTAAGCCACACTACCTTC 59.741 47.826 0.00 0.00 0.00 3.46
7244 8041 3.240302 ACAGAGTAAGCCACACTACCTT 58.760 45.455 0.00 0.00 0.00 3.50
7245 8042 2.890814 ACAGAGTAAGCCACACTACCT 58.109 47.619 0.00 0.00 0.00 3.08
7246 8043 3.130693 CCTACAGAGTAAGCCACACTACC 59.869 52.174 0.00 0.00 0.00 3.18
7247 8044 3.762823 ACCTACAGAGTAAGCCACACTAC 59.237 47.826 0.00 0.00 0.00 2.73
7248 8045 4.043608 ACCTACAGAGTAAGCCACACTA 57.956 45.455 0.00 0.00 0.00 2.74
7249 8046 2.890814 ACCTACAGAGTAAGCCACACT 58.109 47.619 0.00 0.00 0.00 3.55
7250 8047 3.508793 TGTACCTACAGAGTAAGCCACAC 59.491 47.826 0.00 0.00 0.00 3.82
7251 8048 3.508793 GTGTACCTACAGAGTAAGCCACA 59.491 47.826 0.00 0.00 36.78 4.17
7252 8049 3.508793 TGTGTACCTACAGAGTAAGCCAC 59.491 47.826 0.00 0.00 36.78 5.01
7253 8050 3.770046 TGTGTACCTACAGAGTAAGCCA 58.230 45.455 0.00 0.00 36.78 4.75
7254 8051 4.159879 ACATGTGTACCTACAGAGTAAGCC 59.840 45.833 0.00 0.00 36.78 4.35
7255 8052 5.326200 ACATGTGTACCTACAGAGTAAGC 57.674 43.478 0.00 0.00 36.78 3.09
7316 8113 9.915629 ATGTGTAAAACTATATTTCCGCAAAAA 57.084 25.926 0.00 0.00 0.00 1.94
7317 8114 9.915629 AATGTGTAAAACTATATTTCCGCAAAA 57.084 25.926 0.00 0.00 0.00 2.44
7318 8115 9.915629 AAATGTGTAAAACTATATTTCCGCAAA 57.084 25.926 0.00 0.00 0.00 3.68
7319 8116 9.347934 CAAATGTGTAAAACTATATTTCCGCAA 57.652 29.630 0.00 0.00 0.00 4.85
7320 8117 7.486551 GCAAATGTGTAAAACTATATTTCCGCA 59.513 33.333 0.00 0.00 0.00 5.69
7321 8118 7.486551 TGCAAATGTGTAAAACTATATTTCCGC 59.513 33.333 0.00 0.00 0.00 5.54
7322 8119 8.903570 TGCAAATGTGTAAAACTATATTTCCG 57.096 30.769 0.00 0.00 0.00 4.30
7351 8148 2.999355 GCACAAACTTTTGGTCTGCAAA 59.001 40.909 6.65 0.00 42.34 3.68
7356 8153 2.168106 TGCATGCACAAACTTTTGGTCT 59.832 40.909 18.46 0.00 42.34 3.85
7375 8172 6.544038 AAAATTTAAACTTGTGCCATCTGC 57.456 33.333 0.00 0.00 41.77 4.26
7419 8300 2.234414 TGTGTCATCTGCATGCTACTGA 59.766 45.455 20.33 14.86 0.00 3.41
7490 8372 7.077605 CACGTGTCTTTTGAACACATGATATT 58.922 34.615 7.58 0.00 30.91 1.28
7493 8375 4.335315 ACACGTGTCTTTTGAACACATGAT 59.665 37.500 17.22 0.00 32.42 2.45
7494 8376 3.687212 ACACGTGTCTTTTGAACACATGA 59.313 39.130 17.22 0.00 32.42 3.07
7496 8378 4.273005 GACACGTGTCTTTTGAACACAT 57.727 40.909 35.51 3.21 41.65 3.21
7497 8379 3.733024 GACACGTGTCTTTTGAACACA 57.267 42.857 35.51 0.00 41.65 3.72
7540 8422 5.248248 TCTCCATGTGTATCTCAGGTTTTGA 59.752 40.000 0.00 0.00 0.00 2.69
7542 8424 5.762179 TCTCCATGTGTATCTCAGGTTTT 57.238 39.130 0.00 0.00 0.00 2.43
7546 8428 5.089970 TGTTTCTCCATGTGTATCTCAGG 57.910 43.478 0.00 0.00 0.00 3.86
7547 8429 7.439157 TTTTGTTTCTCCATGTGTATCTCAG 57.561 36.000 0.00 0.00 0.00 3.35
7587 8469 5.361427 TCCGTCATAAAGTGTGTCAAAAGA 58.639 37.500 0.00 0.00 0.00 2.52
7588 8470 5.666969 TCCGTCATAAAGTGTGTCAAAAG 57.333 39.130 0.00 0.00 0.00 2.27
7589 8471 6.627395 AATCCGTCATAAAGTGTGTCAAAA 57.373 33.333 0.00 0.00 0.00 2.44
7590 8472 6.038825 ACAAATCCGTCATAAAGTGTGTCAAA 59.961 34.615 0.00 0.00 0.00 2.69
7591 8473 5.529430 ACAAATCCGTCATAAAGTGTGTCAA 59.471 36.000 0.00 0.00 0.00 3.18
7592 8474 5.060506 ACAAATCCGTCATAAAGTGTGTCA 58.939 37.500 0.00 0.00 0.00 3.58
7593 8475 5.390567 GGACAAATCCGTCATAAAGTGTGTC 60.391 44.000 0.00 0.00 37.66 3.67
7594 8476 4.454504 GGACAAATCCGTCATAAAGTGTGT 59.545 41.667 0.00 0.00 37.66 3.72
7595 8477 4.969816 GGACAAATCCGTCATAAAGTGTG 58.030 43.478 0.00 0.00 37.66 3.82
7608 8490 8.360390 ACACTGAGAAATAAAAAGGACAAATCC 58.640 33.333 0.00 0.00 46.69 3.01
7609 8491 9.185192 CACACTGAGAAATAAAAAGGACAAATC 57.815 33.333 0.00 0.00 0.00 2.17
7610 8492 8.695456 ACACACTGAGAAATAAAAAGGACAAAT 58.305 29.630 0.00 0.00 0.00 2.32
7611 8493 8.062065 ACACACTGAGAAATAAAAAGGACAAA 57.938 30.769 0.00 0.00 0.00 2.83
7612 8494 7.639113 ACACACTGAGAAATAAAAAGGACAA 57.361 32.000 0.00 0.00 0.00 3.18
7613 8495 8.918202 ATACACACTGAGAAATAAAAAGGACA 57.082 30.769 0.00 0.00 0.00 4.02
7623 8505 8.137437 CCAAACTCAAAATACACACTGAGAAAT 58.863 33.333 5.01 0.00 38.91 2.17
7624 8506 7.416213 CCCAAACTCAAAATACACACTGAGAAA 60.416 37.037 5.01 0.00 38.91 2.52
7625 8507 6.039270 CCCAAACTCAAAATACACACTGAGAA 59.961 38.462 5.01 0.00 38.91 2.87
7626 8508 5.530915 CCCAAACTCAAAATACACACTGAGA 59.469 40.000 5.01 0.00 38.91 3.27
7627 8509 5.299279 ACCCAAACTCAAAATACACACTGAG 59.701 40.000 0.00 0.00 40.92 3.35
7628 8510 5.197451 ACCCAAACTCAAAATACACACTGA 58.803 37.500 0.00 0.00 0.00 3.41
7629 8511 5.299279 AGACCCAAACTCAAAATACACACTG 59.701 40.000 0.00 0.00 0.00 3.66
7630 8512 5.299279 CAGACCCAAACTCAAAATACACACT 59.701 40.000 0.00 0.00 0.00 3.55
7631 8513 5.298276 TCAGACCCAAACTCAAAATACACAC 59.702 40.000 0.00 0.00 0.00 3.82
7632 8514 5.441500 TCAGACCCAAACTCAAAATACACA 58.558 37.500 0.00 0.00 0.00 3.72
7633 8515 6.575162 ATCAGACCCAAACTCAAAATACAC 57.425 37.500 0.00 0.00 0.00 2.90
7634 8516 7.004086 AGAATCAGACCCAAACTCAAAATACA 58.996 34.615 0.00 0.00 0.00 2.29
7635 8517 7.454260 AGAATCAGACCCAAACTCAAAATAC 57.546 36.000 0.00 0.00 0.00 1.89
7636 8518 8.477419 AAAGAATCAGACCCAAACTCAAAATA 57.523 30.769 0.00 0.00 0.00 1.40
7637 8519 6.983906 AAGAATCAGACCCAAACTCAAAAT 57.016 33.333 0.00 0.00 0.00 1.82
7638 8520 6.790232 AAAGAATCAGACCCAAACTCAAAA 57.210 33.333 0.00 0.00 0.00 2.44
7639 8521 6.790232 AAAAGAATCAGACCCAAACTCAAA 57.210 33.333 0.00 0.00 0.00 2.69
7640 8522 6.490040 CCTAAAAGAATCAGACCCAAACTCAA 59.510 38.462 0.00 0.00 0.00 3.02
7641 8523 6.003950 CCTAAAAGAATCAGACCCAAACTCA 58.996 40.000 0.00 0.00 0.00 3.41
7642 8524 6.238648 TCCTAAAAGAATCAGACCCAAACTC 58.761 40.000 0.00 0.00 0.00 3.01
7643 8525 6.183361 ACTCCTAAAAGAATCAGACCCAAACT 60.183 38.462 0.00 0.00 0.00 2.66
7644 8526 6.004574 ACTCCTAAAAGAATCAGACCCAAAC 58.995 40.000 0.00 0.00 0.00 2.93
7645 8527 6.200878 ACTCCTAAAAGAATCAGACCCAAA 57.799 37.500 0.00 0.00 0.00 3.28
7646 8528 5.843019 ACTCCTAAAAGAATCAGACCCAA 57.157 39.130 0.00 0.00 0.00 4.12
7647 8529 5.073144 ACAACTCCTAAAAGAATCAGACCCA 59.927 40.000 0.00 0.00 0.00 4.51
7648 8530 5.561679 ACAACTCCTAAAAGAATCAGACCC 58.438 41.667 0.00 0.00 0.00 4.46
7649 8531 8.504815 GTTTACAACTCCTAAAAGAATCAGACC 58.495 37.037 0.00 0.00 0.00 3.85
7650 8532 9.052759 TGTTTACAACTCCTAAAAGAATCAGAC 57.947 33.333 0.00 0.00 0.00 3.51
7651 8533 9.052759 GTGTTTACAACTCCTAAAAGAATCAGA 57.947 33.333 0.00 0.00 0.00 3.27
7652 8534 9.057089 AGTGTTTACAACTCCTAAAAGAATCAG 57.943 33.333 0.00 0.00 0.00 2.90
7653 8535 8.974060 AGTGTTTACAACTCCTAAAAGAATCA 57.026 30.769 0.00 0.00 0.00 2.57
7654 8536 9.665264 CAAGTGTTTACAACTCCTAAAAGAATC 57.335 33.333 0.00 0.00 0.00 2.52
7655 8537 9.185680 ACAAGTGTTTACAACTCCTAAAAGAAT 57.814 29.630 0.00 0.00 0.00 2.40
7656 8538 8.455682 CACAAGTGTTTACAACTCCTAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
7657 8539 7.608761 ACACAAGTGTTTACAACTCCTAAAAGA 59.391 33.333 0.00 0.00 41.83 2.52
7658 8540 7.758495 ACACAAGTGTTTACAACTCCTAAAAG 58.242 34.615 0.00 0.00 41.83 2.27
7659 8541 7.690952 ACACAAGTGTTTACAACTCCTAAAA 57.309 32.000 0.00 0.00 41.83 1.52
7674 8556 3.128589 GTGGATGTTCACAACACAAGTGT 59.871 43.478 0.00 0.00 45.50 3.55
7675 8557 3.694734 GTGGATGTTCACAACACAAGTG 58.305 45.455 11.26 0.00 45.50 3.16
7676 8558 2.354510 CGTGGATGTTCACAACACAAGT 59.645 45.455 14.67 0.00 45.50 3.16
7677 8559 2.611751 TCGTGGATGTTCACAACACAAG 59.388 45.455 14.67 4.60 45.50 3.16
7678 8560 2.633488 TCGTGGATGTTCACAACACAA 58.367 42.857 14.67 0.00 45.50 3.33
7679 8561 2.317530 TCGTGGATGTTCACAACACA 57.682 45.000 14.67 0.12 45.50 3.72
7680 8562 3.003275 ACAATCGTGGATGTTCACAACAC 59.997 43.478 7.66 7.66 45.50 3.32
7681 8563 3.210227 ACAATCGTGGATGTTCACAACA 58.790 40.909 0.00 0.00 46.94 3.33
7682 8564 3.896648 ACAATCGTGGATGTTCACAAC 57.103 42.857 0.00 0.00 37.50 3.32
7683 8565 4.909696 AAACAATCGTGGATGTTCACAA 57.090 36.364 0.00 0.00 37.50 3.33
7684 8566 4.909696 AAAACAATCGTGGATGTTCACA 57.090 36.364 0.00 0.00 37.50 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.