Multiple sequence alignment - TraesCS2D01G427200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G427200 chr2D 100.000 7069 0 0 1 7069 539411522 539418590 0.000000e+00 13055.0
1 TraesCS2D01G427200 chr2D 81.855 248 39 6 96 338 270845920 270846166 3.340000e-48 204.0
2 TraesCS2D01G427200 chr2D 85.321 109 13 3 96 202 508246973 508246866 7.500000e-20 110.0
3 TraesCS2D01G427200 chr2A 91.061 1980 115 20 3224 5152 682623723 682625691 0.000000e+00 2619.0
4 TraesCS2D01G427200 chr2A 84.661 1845 153 60 442 2261 682621045 682622784 0.000000e+00 1720.0
5 TraesCS2D01G427200 chr2A 95.612 547 24 0 5740 6286 682626383 682626929 0.000000e+00 878.0
6 TraesCS2D01G427200 chr2A 92.813 487 21 5 5172 5645 682625772 682626257 0.000000e+00 693.0
7 TraesCS2D01G427200 chr2A 91.449 421 25 4 2255 2673 682622806 682623217 1.030000e-157 568.0
8 TraesCS2D01G427200 chr2A 93.629 361 18 4 2889 3247 682623359 682623716 1.040000e-147 534.0
9 TraesCS2D01G427200 chr2A 94.717 265 11 3 6301 6564 682626914 682627176 6.600000e-110 409.0
10 TraesCS2D01G427200 chr2A 90.000 190 14 4 218 406 682620852 682621037 2.550000e-59 241.0
11 TraesCS2D01G427200 chr2A 92.308 156 11 1 28 182 682620693 682620848 3.320000e-53 220.0
12 TraesCS2D01G427200 chr2A 90.419 167 11 2 2713 2876 682623213 682623377 1.540000e-51 215.0
13 TraesCS2D01G427200 chr2A 97.059 34 1 0 1987 2020 23540051 23540018 2.750000e-04 58.4
14 TraesCS2D01G427200 chr2B 92.748 1572 91 18 4728 6286 643360085 643361646 0.000000e+00 2250.0
15 TraesCS2D01G427200 chr2B 88.796 1562 136 23 2945 4485 643264164 643265707 0.000000e+00 1879.0
16 TraesCS2D01G427200 chr2B 91.327 1153 57 20 5172 6286 643266203 643267350 0.000000e+00 1535.0
17 TraesCS2D01G427200 chr2B 87.191 1093 88 29 1795 2871 643263084 643264140 0.000000e+00 1195.0
18 TraesCS2D01G427200 chr2B 92.843 517 29 5 6556 7069 773727571 773727060 0.000000e+00 743.0
19 TraesCS2D01G427200 chr2B 88.750 560 48 7 650 1202 643262222 643262773 0.000000e+00 671.0
20 TraesCS2D01G427200 chr2B 93.072 433 24 2 4725 5155 643265698 643266126 4.650000e-176 628.0
21 TraesCS2D01G427200 chr2B 91.006 467 35 4 4023 4485 643359628 643360091 2.170000e-174 623.0
22 TraesCS2D01G427200 chr2B 79.310 696 103 23 2890 3565 643358056 643358730 3.890000e-122 449.0
23 TraesCS2D01G427200 chr2B 92.562 242 16 1 376 615 643261984 643262225 5.250000e-91 346.0
24 TraesCS2D01G427200 chr2B 95.455 154 5 2 6412 6564 643267571 643267723 1.970000e-60 244.0
25 TraesCS2D01G427200 chr2B 76.552 435 78 16 4062 4482 638528322 638528746 4.290000e-52 217.0
26 TraesCS2D01G427200 chr2B 92.105 152 4 1 6303 6454 643361633 643361776 2.580000e-49 207.0
27 TraesCS2D01G427200 chr2B 96.522 115 4 0 6301 6415 643267335 643267449 2.600000e-44 191.0
28 TraesCS2D01G427200 chr6A 93.398 515 27 7 6558 7069 71545831 71546341 0.000000e+00 756.0
29 TraesCS2D01G427200 chr4B 92.233 515 32 5 6558 7069 630140559 630141068 0.000000e+00 723.0
30 TraesCS2D01G427200 chr4B 87.115 520 48 9 6560 7069 540324264 540324774 7.960000e-159 571.0
31 TraesCS2D01G427200 chr4B 81.323 257 39 9 1271 1520 500080899 500081153 4.320000e-47 200.0
32 TraesCS2D01G427200 chr4B 97.222 36 1 0 5117 5152 212497996 212497961 2.130000e-05 62.1
33 TraesCS2D01G427200 chr3B 91.667 516 34 6 6558 7069 467045431 467044921 0.000000e+00 706.0
34 TraesCS2D01G427200 chr7B 89.709 515 32 9 6558 7069 595078741 595078245 7.730000e-179 638.0
35 TraesCS2D01G427200 chr7B 86.538 312 36 5 5759 6070 488369968 488369663 8.780000e-89 339.0
36 TraesCS2D01G427200 chr7B 83.150 273 27 10 6716 6979 11020783 11021045 1.530000e-56 231.0
37 TraesCS2D01G427200 chr7B 100.000 34 0 0 1987 2020 666756766 666756799 5.920000e-06 63.9
38 TraesCS2D01G427200 chr1A 90.574 488 19 6 6586 7069 9718194 9717730 7.790000e-174 621.0
39 TraesCS2D01G427200 chr1A 100.000 34 0 0 1987 2020 77163483 77163516 5.920000e-06 63.9
40 TraesCS2D01G427200 chr1A 97.143 35 1 0 1985 2019 592377869 592377835 7.660000e-05 60.2
41 TraesCS2D01G427200 chr1A 96.970 33 1 0 5123 5155 380958008 380957976 1.000000e-03 56.5
42 TraesCS2D01G427200 chr1A 100.000 30 0 0 1904 1933 568139983 568139954 1.000000e-03 56.5
43 TraesCS2D01G427200 chr5A 86.744 347 40 5 1229 1574 559739221 559738880 1.440000e-101 381.0
44 TraesCS2D01G427200 chr5A 78.571 322 49 15 1265 1573 78477620 78477306 2.010000e-45 195.0
45 TraesCS2D01G427200 chr5A 100.000 31 0 0 1989 2019 176146303 176146333 2.750000e-04 58.4
46 TraesCS2D01G427200 chr5D 85.100 349 44 6 1229 1574 443498474 443498131 4.060000e-92 350.0
47 TraesCS2D01G427200 chr5D 78.797 316 44 18 1265 1573 84181377 84181078 2.600000e-44 191.0
48 TraesCS2D01G427200 chr7D 85.015 327 43 4 5744 6070 463703758 463704078 1.900000e-85 327.0
49 TraesCS2D01G427200 chr7D 81.298 262 42 6 2932 3191 463701524 463701780 9.290000e-49 206.0
50 TraesCS2D01G427200 chr7D 77.253 233 34 15 1265 1481 479125569 479125798 1.250000e-22 119.0
51 TraesCS2D01G427200 chr7D 100.000 36 0 0 1987 2022 35122415 35122380 4.580000e-07 67.6
52 TraesCS2D01G427200 chr5B 82.880 368 54 7 1211 1574 539929242 539928880 8.850000e-84 322.0
53 TraesCS2D01G427200 chr7A 78.821 458 79 15 5199 5649 536772129 536771683 6.940000e-75 292.0
54 TraesCS2D01G427200 chr7A 83.333 222 33 3 3005 3223 536729857 536729637 1.200000e-47 202.0
55 TraesCS2D01G427200 chr7A 85.714 182 26 0 3010 3191 536773726 536773545 7.240000e-45 193.0
56 TraesCS2D01G427200 chr7A 94.595 37 2 0 1984 2020 430781549 430781513 2.750000e-04 58.4
57 TraesCS2D01G427200 chr7A 94.444 36 2 0 1985 2020 316538380 316538415 1.000000e-03 56.5
58 TraesCS2D01G427200 chr6D 80.263 380 47 17 1210 1574 105823614 105823248 1.960000e-65 261.0
59 TraesCS2D01G427200 chr6D 96.970 33 1 0 5120 5152 101229846 101229878 1.000000e-03 56.5
60 TraesCS2D01G427200 chr6B 80.263 380 47 17 1210 1574 192354113 192353747 1.960000e-65 261.0
61 TraesCS2D01G427200 chr4A 77.727 220 28 11 1291 1509 60882465 60882664 1.610000e-21 115.0
62 TraesCS2D01G427200 chr4A 100.000 30 0 0 1904 1933 387088654 387088683 1.000000e-03 56.5
63 TraesCS2D01G427200 chr4D 90.566 53 4 1 5117 5169 362705097 362705148 1.270000e-07 69.4
64 TraesCS2D01G427200 chr4D 93.023 43 1 2 1989 2030 187973920 187973879 2.130000e-05 62.1
65 TraesCS2D01G427200 chr4D 94.444 36 2 0 1904 1939 220346908 220346873 1.000000e-03 56.5
66 TraesCS2D01G427200 chr3D 96.970 33 1 0 5120 5152 126949045 126949077 1.000000e-03 56.5
67 TraesCS2D01G427200 chr1D 96.970 33 1 0 5123 5155 303325643 303325611 1.000000e-03 56.5
68 TraesCS2D01G427200 chr1B 96.970 33 1 0 5123 5155 410804760 410804728 1.000000e-03 56.5
69 TraesCS2D01G427200 chr1B 100.000 28 0 0 1906 1933 684249397 684249370 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G427200 chr2D 539411522 539418590 7068 False 13055.000 13055 100.000000 1 7069 1 chr2D.!!$F2 7068
1 TraesCS2D01G427200 chr2A 682620693 682627176 6483 False 809.700 2619 91.666900 28 6564 10 chr2A.!!$F1 6536
2 TraesCS2D01G427200 chr2B 643358056 643361776 3720 False 882.250 2250 88.792250 2890 6454 4 chr2B.!!$F3 3564
3 TraesCS2D01G427200 chr2B 643261984 643267723 5739 False 836.125 1879 91.709375 376 6564 8 chr2B.!!$F2 6188
4 TraesCS2D01G427200 chr2B 773727060 773727571 511 True 743.000 743 92.843000 6556 7069 1 chr2B.!!$R1 513
5 TraesCS2D01G427200 chr6A 71545831 71546341 510 False 756.000 756 93.398000 6558 7069 1 chr6A.!!$F1 511
6 TraesCS2D01G427200 chr4B 630140559 630141068 509 False 723.000 723 92.233000 6558 7069 1 chr4B.!!$F3 511
7 TraesCS2D01G427200 chr4B 540324264 540324774 510 False 571.000 571 87.115000 6560 7069 1 chr4B.!!$F2 509
8 TraesCS2D01G427200 chr3B 467044921 467045431 510 True 706.000 706 91.667000 6558 7069 1 chr3B.!!$R1 511
9 TraesCS2D01G427200 chr7D 463701524 463704078 2554 False 266.500 327 83.156500 2932 6070 2 chr7D.!!$F2 3138
10 TraesCS2D01G427200 chr7A 536771683 536773726 2043 True 242.500 292 82.267500 3010 5649 2 chr7A.!!$R3 2639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 645 0.040514 TTTTGGAGCGATGCAACACG 60.041 50.000 7.24 0.0 0.00 4.49 F
831 869 0.108138 GCATCGACCCTGCTAACACT 60.108 55.000 2.24 0.0 36.68 3.55 F
1929 2102 0.184692 TCCACCTCAACATGCAACCA 59.815 50.000 0.00 0.0 0.00 3.67 F
3546 3828 2.572290 AGCGCTTTGTTACTTGACCTT 58.428 42.857 2.64 0.0 0.00 3.50 F
4504 5567 0.319641 AGAGAACCGAACTTGCGACC 60.320 55.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2111 0.188342 TGGGAAGGGCTCAGCTTTTT 59.812 50.0 0.00 0.0 0.00 1.94 R
2294 2507 2.586258 AGAGCATTCGCATTCGTAGT 57.414 45.0 0.00 0.0 42.27 2.73 R
3685 3992 1.123077 AGATGTCAAGGCCTCGCATA 58.877 50.0 5.23 0.0 0.00 3.14 R
5398 6580 0.109132 CATCCCCGAAAGCAACAAGC 60.109 55.0 0.00 0.0 46.19 4.01 R
6196 7434 0.178964 CCTCAACCCCAAAAGCTCCA 60.179 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.903798 GAATCTCCTTCAGCTCACAGG 58.096 52.381 0.00 0.00 33.78 4.00
21 22 0.540923 ATCTCCTTCAGCTCACAGGC 59.459 55.000 0.00 0.00 0.00 4.85
22 23 0.543883 TCTCCTTCAGCTCACAGGCT 60.544 55.000 0.00 0.00 44.10 4.58
23 24 1.189752 CTCCTTCAGCTCACAGGCTA 58.810 55.000 0.00 0.00 41.00 3.93
24 25 0.898320 TCCTTCAGCTCACAGGCTAC 59.102 55.000 0.00 0.00 41.00 3.58
25 26 0.901124 CCTTCAGCTCACAGGCTACT 59.099 55.000 0.00 0.00 41.00 2.57
26 27 1.277557 CCTTCAGCTCACAGGCTACTT 59.722 52.381 0.00 0.00 41.00 2.24
43 44 5.098211 GCTACTTTTGATCCACATTTGCTC 58.902 41.667 0.00 0.00 0.00 4.26
79 80 5.767816 AGCCCGATATATTTGGTTGAAAC 57.232 39.130 4.73 0.00 0.00 2.78
117 118 1.243902 TTCGTGAAGAAATGGCACCC 58.756 50.000 0.00 0.00 35.61 4.61
126 127 0.623723 AAATGGCACCCGTGGTATCT 59.376 50.000 0.00 0.00 32.11 1.98
131 132 1.296727 GCACCCGTGGTATCTTTAGC 58.703 55.000 0.00 0.00 32.11 3.09
147 148 6.963049 TCTTTAGCGAAGAAAATACAGTCC 57.037 37.500 3.49 0.00 41.34 3.85
154 155 4.797349 CGAAGAAAATACAGTCCGACCTAC 59.203 45.833 0.00 0.00 0.00 3.18
167 168 6.094048 CAGTCCGACCTACAATTCATTCAAAT 59.906 38.462 0.00 0.00 0.00 2.32
287 289 7.027161 CCACGTTTGATACCCAAAAATTCTAG 58.973 38.462 0.00 0.00 45.40 2.43
291 293 9.124807 CGTTTGATACCCAAAAATTCTAGTTTC 57.875 33.333 0.00 0.00 45.40 2.78
351 354 5.303589 TCATATAGGGTTCTCGGGTACTTTG 59.696 44.000 0.00 0.00 0.00 2.77
356 359 3.633525 GGGTTCTCGGGTACTTTGTTTTT 59.366 43.478 0.00 0.00 0.00 1.94
395 398 4.439968 GGTACCTAGGAGTTGAAAATCCG 58.560 47.826 17.98 0.00 40.73 4.18
397 400 2.572104 ACCTAGGAGTTGAAAATCCGCT 59.428 45.455 17.98 0.00 40.73 5.52
490 493 2.026262 TGATTAAACTGACTGGGAGGGC 60.026 50.000 0.00 0.00 0.00 5.19
498 501 1.977293 GACTGGGAGGGCTGTCCATC 61.977 65.000 0.00 0.00 42.22 3.51
523 526 0.661187 GCAAGTTCGGCACACACATG 60.661 55.000 0.00 0.00 0.00 3.21
557 560 4.949238 TCTATGTTAGTTACCCTGCGTACA 59.051 41.667 0.00 0.00 0.00 2.90
559 562 3.852286 TGTTAGTTACCCTGCGTACATG 58.148 45.455 0.00 0.00 0.00 3.21
611 616 7.937394 AGCCTAATTGGAGTATACATACAAACC 59.063 37.037 5.50 3.62 38.35 3.27
621 626 1.302192 ATACAAACCGCGTGCTGGT 60.302 52.632 4.92 0.00 42.98 4.00
631 636 2.250939 CGTGCTGGTTTTGGAGCGA 61.251 57.895 0.00 0.00 38.09 4.93
640 645 0.040514 TTTTGGAGCGATGCAACACG 60.041 50.000 7.24 0.00 0.00 4.49
647 652 1.715585 CGATGCAACACGGTGATCC 59.284 57.895 16.29 0.00 0.00 3.36
670 675 2.202362 CGTCACAGAGCTCGTCGG 60.202 66.667 8.37 2.11 0.00 4.79
671 676 2.955402 GTCACAGAGCTCGTCGGT 59.045 61.111 8.37 2.78 33.24 4.69
679 684 0.179169 GAGCTCGTCGGTTGGTACTC 60.179 60.000 0.00 0.00 0.00 2.59
723 729 1.882352 GCCCAGATTTCGTCAACCACT 60.882 52.381 0.00 0.00 0.00 4.00
757 765 3.033764 GCGAGTGCGGACGAACAA 61.034 61.111 5.53 0.00 38.16 2.83
795 805 1.616628 AGGGTTCAGCTCGGGGATT 60.617 57.895 0.00 0.00 0.00 3.01
803 813 0.472734 AGCTCGGGGATTAGATGCCT 60.473 55.000 0.00 0.00 41.10 4.75
826 864 2.805546 GACGCATCGACCCTGCTA 59.194 61.111 7.80 0.00 37.48 3.49
827 865 1.141019 GACGCATCGACCCTGCTAA 59.859 57.895 7.80 0.00 37.48 3.09
828 866 1.146358 GACGCATCGACCCTGCTAAC 61.146 60.000 7.80 0.00 37.48 2.34
829 867 1.153647 CGCATCGACCCTGCTAACA 60.154 57.895 7.80 0.00 37.48 2.41
830 868 1.421410 CGCATCGACCCTGCTAACAC 61.421 60.000 7.80 0.00 37.48 3.32
831 869 0.108138 GCATCGACCCTGCTAACACT 60.108 55.000 2.24 0.00 36.68 3.55
832 870 1.645034 CATCGACCCTGCTAACACTG 58.355 55.000 0.00 0.00 0.00 3.66
833 871 0.108138 ATCGACCCTGCTAACACTGC 60.108 55.000 0.00 0.00 0.00 4.40
834 872 2.094659 CGACCCTGCTAACACTGCG 61.095 63.158 0.00 0.00 0.00 5.18
835 873 1.004918 GACCCTGCTAACACTGCGT 60.005 57.895 0.00 0.00 0.00 5.24
836 874 1.004918 ACCCTGCTAACACTGCGTC 60.005 57.895 0.00 0.00 0.00 5.19
837 875 2.094659 CCCTGCTAACACTGCGTCG 61.095 63.158 0.00 0.00 0.00 5.12
838 876 2.730672 CCTGCTAACACTGCGTCGC 61.731 63.158 11.10 11.10 0.00 5.19
839 877 2.730672 CTGCTAACACTGCGTCGCC 61.731 63.158 15.88 0.00 0.00 5.54
840 878 3.838795 GCTAACACTGCGTCGCCG 61.839 66.667 15.88 11.36 37.07 6.46
867 905 2.415893 GCATGCCATAAACTGAAGCGTT 60.416 45.455 6.36 0.00 0.00 4.84
889 927 0.386605 CGCCGTATCTGCTAGCTCAG 60.387 60.000 17.23 5.97 35.46 3.35
894 932 4.336993 GCCGTATCTGCTAGCTCAGTATAT 59.663 45.833 17.23 0.00 35.63 0.86
895 933 5.527951 GCCGTATCTGCTAGCTCAGTATATA 59.472 44.000 17.23 0.00 35.63 0.86
896 934 6.205853 GCCGTATCTGCTAGCTCAGTATATAT 59.794 42.308 17.23 0.00 35.63 0.86
897 935 7.580600 CCGTATCTGCTAGCTCAGTATATATG 58.419 42.308 17.23 5.62 35.63 1.78
898 936 7.227711 CCGTATCTGCTAGCTCAGTATATATGT 59.772 40.741 17.23 0.00 35.63 2.29
938 980 3.391382 ACCACCACCGCCTCTAGC 61.391 66.667 0.00 0.00 38.52 3.42
950 992 1.901464 CTCTAGCTCCTCCGCTCCC 60.901 68.421 0.00 0.00 41.30 4.30
963 1005 2.123425 CTCCCCACCGGCTAGCTA 60.123 66.667 15.72 0.00 0.00 3.32
964 1006 2.123425 TCCCCACCGGCTAGCTAG 60.123 66.667 16.84 16.84 0.00 3.42
965 1007 2.444140 CCCCACCGGCTAGCTAGT 60.444 66.667 21.62 9.52 0.00 2.57
966 1008 1.152610 CCCCACCGGCTAGCTAGTA 60.153 63.158 21.62 0.00 0.00 1.82
967 1009 0.757935 CCCCACCGGCTAGCTAGTAA 60.758 60.000 21.62 0.00 0.00 2.24
968 1010 0.388294 CCCACCGGCTAGCTAGTAAC 59.612 60.000 21.62 11.51 0.00 2.50
969 1011 1.400737 CCACCGGCTAGCTAGTAACT 58.599 55.000 21.62 0.35 0.00 2.24
1113 1155 1.224592 CCGGATGGGGAACAAGGAG 59.775 63.158 0.00 0.00 0.00 3.69
1145 1187 1.348064 CCCCCAGGTAGCGATAATCA 58.652 55.000 0.00 0.00 0.00 2.57
1188 1230 3.003793 TGTTGTTGTTAATGCGCTGCTTA 59.996 39.130 9.73 0.97 0.00 3.09
1190 1232 3.757184 TGTTGTTAATGCGCTGCTTATG 58.243 40.909 9.73 0.00 0.00 1.90
1193 1235 2.354510 TGTTAATGCGCTGCTTATGTCC 59.645 45.455 9.73 0.00 0.00 4.02
1206 1248 4.041075 TGCTTATGTCCCTGTGAAAGTGTA 59.959 41.667 0.00 0.00 0.00 2.90
1224 1266 7.787725 AAGTGTAAGAGTGGTTTTTCTACAG 57.212 36.000 0.00 0.00 0.00 2.74
1235 1277 5.530915 TGGTTTTTCTACAGTCAGGACATTG 59.469 40.000 1.84 0.00 0.00 2.82
1237 1279 4.350368 TTTCTACAGTCAGGACATTGCA 57.650 40.909 1.84 0.00 0.00 4.08
1248 1290 1.164411 GACATTGCACCCACGATTGA 58.836 50.000 0.00 0.00 0.00 2.57
1251 1293 2.288152 ACATTGCACCCACGATTGAAAC 60.288 45.455 0.00 0.00 0.00 2.78
1253 1295 1.614996 TGCACCCACGATTGAAACAT 58.385 45.000 0.00 0.00 0.00 2.71
1265 1307 9.729023 CCACGATTGAAACATATAGCAAATAAA 57.271 29.630 0.00 0.00 0.00 1.40
1288 1330 8.593492 AAAATAAATCTGAAACTTTGTGGCTC 57.407 30.769 0.00 0.00 0.00 4.70
1289 1331 3.904136 AATCTGAAACTTTGTGGCTCG 57.096 42.857 0.00 0.00 0.00 5.03
1290 1332 2.613026 TCTGAAACTTTGTGGCTCGA 57.387 45.000 0.00 0.00 0.00 4.04
1291 1333 3.126001 TCTGAAACTTTGTGGCTCGAT 57.874 42.857 0.00 0.00 0.00 3.59
1292 1334 3.476552 TCTGAAACTTTGTGGCTCGATT 58.523 40.909 0.00 0.00 0.00 3.34
1293 1335 4.637276 TCTGAAACTTTGTGGCTCGATTA 58.363 39.130 0.00 0.00 0.00 1.75
1294 1336 5.245531 TCTGAAACTTTGTGGCTCGATTAT 58.754 37.500 0.00 0.00 0.00 1.28
1295 1337 5.122239 TCTGAAACTTTGTGGCTCGATTATG 59.878 40.000 0.00 0.00 0.00 1.90
1296 1338 5.000591 TGAAACTTTGTGGCTCGATTATGA 58.999 37.500 0.00 0.00 0.00 2.15
1297 1339 5.647658 TGAAACTTTGTGGCTCGATTATGAT 59.352 36.000 0.00 0.00 0.00 2.45
1298 1340 5.741388 AACTTTGTGGCTCGATTATGATC 57.259 39.130 0.00 0.00 0.00 2.92
1299 1341 4.769688 ACTTTGTGGCTCGATTATGATCA 58.230 39.130 0.00 0.00 32.33 2.92
1300 1342 5.185454 ACTTTGTGGCTCGATTATGATCAA 58.815 37.500 0.00 0.00 32.33 2.57
1301 1343 5.647658 ACTTTGTGGCTCGATTATGATCAAA 59.352 36.000 0.00 0.00 32.33 2.69
1302 1344 6.319658 ACTTTGTGGCTCGATTATGATCAAAT 59.680 34.615 0.00 1.06 32.33 2.32
1303 1345 5.678132 TGTGGCTCGATTATGATCAAATG 57.322 39.130 0.00 0.00 32.33 2.32
1304 1346 5.125356 TGTGGCTCGATTATGATCAAATGT 58.875 37.500 0.00 0.00 32.33 2.71
1305 1347 5.589855 TGTGGCTCGATTATGATCAAATGTT 59.410 36.000 0.00 0.00 32.33 2.71
1306 1348 6.095300 TGTGGCTCGATTATGATCAAATGTTT 59.905 34.615 0.00 0.00 32.33 2.83
1317 1359 6.647334 TGATCAAATGTTTTAGGTGCTTGA 57.353 33.333 0.00 0.00 0.00 3.02
1321 1363 8.907222 ATCAAATGTTTTAGGTGCTTGAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
1324 1366 9.786105 CAAATGTTTTAGGTGCTTGAAAATTTT 57.214 25.926 2.28 2.28 0.00 1.82
1333 1375 3.626670 TGCTTGAAAATTTTGGTTGCCAG 59.373 39.130 8.47 0.00 33.81 4.85
1342 1384 1.452110 TTGGTTGCCAGATGACATCG 58.548 50.000 9.77 5.25 33.81 3.84
1347 1389 0.687427 TGCCAGATGACATCGGAGGA 60.687 55.000 22.49 10.24 0.00 3.71
1403 1448 9.740239 ATATCTGCACTGTTTAAGCATAATTTG 57.260 29.630 0.00 0.00 37.68 2.32
1404 1449 6.980593 TCTGCACTGTTTAAGCATAATTTGT 58.019 32.000 0.00 0.00 37.68 2.83
1405 1450 8.105097 TCTGCACTGTTTAAGCATAATTTGTA 57.895 30.769 0.00 0.00 37.68 2.41
1406 1451 8.739039 TCTGCACTGTTTAAGCATAATTTGTAT 58.261 29.630 0.00 0.00 37.68 2.29
1408 1453 9.703892 TGCACTGTTTAAGCATAATTTGTATTT 57.296 25.926 0.00 0.00 32.55 1.40
1441 1486 6.044046 TGCAGATCATTTGATGTTATTTGGC 58.956 36.000 0.00 0.00 34.37 4.52
1456 1501 1.620739 TTGGCCACCAAAGCTTGCAA 61.621 50.000 3.88 0.00 40.92 4.08
1457 1502 1.301165 GGCCACCAAAGCTTGCAAG 60.301 57.895 22.44 22.44 0.00 4.01
1501 1546 6.811253 AATTAATGCCACGAAGTAACAGAA 57.189 33.333 0.00 0.00 41.61 3.02
1569 1616 2.910319 TGAACTTGGGTGTAGCCACTAT 59.090 45.455 1.64 0.00 41.53 2.12
1594 1641 1.952990 TCGCTGTGAAATTGCTTGGAA 59.047 42.857 0.00 0.00 0.00 3.53
1618 1665 7.234661 ACCTTTTTGTGACTAGGAAAAACAA 57.765 32.000 0.00 0.00 0.00 2.83
1643 1693 1.526917 GCGCAGGCCCTAATCACAT 60.527 57.895 0.30 0.00 0.00 3.21
1730 1783 8.956426 GTTTCCAACATCAATTTATACCTCTCA 58.044 33.333 0.00 0.00 0.00 3.27
1731 1784 8.506168 TTCCAACATCAATTTATACCTCTCAC 57.494 34.615 0.00 0.00 0.00 3.51
1732 1785 7.629157 TCCAACATCAATTTATACCTCTCACA 58.371 34.615 0.00 0.00 0.00 3.58
1733 1786 7.552687 TCCAACATCAATTTATACCTCTCACAC 59.447 37.037 0.00 0.00 0.00 3.82
1734 1787 7.336679 CCAACATCAATTTATACCTCTCACACA 59.663 37.037 0.00 0.00 0.00 3.72
1735 1788 8.896744 CAACATCAATTTATACCTCTCACACAT 58.103 33.333 0.00 0.00 0.00 3.21
1768 1927 8.012957 TCCTTTATTTCAAGGCTTAACAACAA 57.987 30.769 0.00 0.00 42.97 2.83
1770 1929 7.708752 CCTTTATTTCAAGGCTTAACAACAACA 59.291 33.333 0.00 0.00 37.12 3.33
1826 1995 9.797556 AATTATTAGTTCAATTTTCCCGCTAAC 57.202 29.630 0.00 0.00 0.00 2.34
1829 1998 4.652822 AGTTCAATTTTCCCGCTAACTCT 58.347 39.130 0.00 0.00 0.00 3.24
1896 2069 2.185004 ACATCTTCACCCTCAAACCG 57.815 50.000 0.00 0.00 0.00 4.44
1928 2101 1.474077 GATCCACCTCAACATGCAACC 59.526 52.381 0.00 0.00 0.00 3.77
1929 2102 0.184692 TCCACCTCAACATGCAACCA 59.815 50.000 0.00 0.00 0.00 3.67
1999 2172 8.716674 ATAGTTATTAATTACTCCCTCCGTCA 57.283 34.615 10.25 0.00 0.00 4.35
2000 2173 6.814043 AGTTATTAATTACTCCCTCCGTCAC 58.186 40.000 1.26 0.00 0.00 3.67
2001 2174 6.381994 AGTTATTAATTACTCCCTCCGTCACA 59.618 38.462 1.26 0.00 0.00 3.58
2002 2175 5.888982 ATTAATTACTCCCTCCGTCACAT 57.111 39.130 0.00 0.00 0.00 3.21
2003 2176 6.989155 ATTAATTACTCCCTCCGTCACATA 57.011 37.500 0.00 0.00 0.00 2.29
2004 2177 6.795144 TTAATTACTCCCTCCGTCACATAA 57.205 37.500 0.00 0.00 0.00 1.90
2005 2178 5.888982 AATTACTCCCTCCGTCACATAAT 57.111 39.130 0.00 0.00 0.00 1.28
2006 2179 6.989155 AATTACTCCCTCCGTCACATAATA 57.011 37.500 0.00 0.00 0.00 0.98
2007 2180 7.554959 AATTACTCCCTCCGTCACATAATAT 57.445 36.000 0.00 0.00 0.00 1.28
2008 2181 8.660295 AATTACTCCCTCCGTCACATAATATA 57.340 34.615 0.00 0.00 0.00 0.86
2009 2182 8.660295 ATTACTCCCTCCGTCACATAATATAA 57.340 34.615 0.00 0.00 0.00 0.98
2010 2183 6.591750 ACTCCCTCCGTCACATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
2011 2184 6.312529 ACTCCCTCCGTCACATAATATAAGA 58.687 40.000 0.00 0.00 0.00 2.10
2012 2185 6.781014 ACTCCCTCCGTCACATAATATAAGAA 59.219 38.462 0.00 0.00 0.00 2.52
2013 2186 7.455008 ACTCCCTCCGTCACATAATATAAGAAT 59.545 37.037 0.00 0.00 0.00 2.40
2014 2187 7.611770 TCCCTCCGTCACATAATATAAGAATG 58.388 38.462 0.00 0.00 0.00 2.67
2015 2188 7.234782 TCCCTCCGTCACATAATATAAGAATGT 59.765 37.037 0.00 0.00 34.22 2.71
2016 2189 7.878127 CCCTCCGTCACATAATATAAGAATGTT 59.122 37.037 0.00 0.00 31.60 2.71
2017 2190 9.273016 CCTCCGTCACATAATATAAGAATGTTT 57.727 33.333 0.00 0.00 31.60 2.83
2158 2339 4.061596 ACCAATTTTTGCATAAACCCACG 58.938 39.130 4.36 0.00 0.00 4.94
2294 2507 3.585289 TCCACCTTTGTGTCTAATAGGCA 59.415 43.478 0.00 0.00 41.09 4.75
2304 2517 4.444720 GTGTCTAATAGGCACTACGAATGC 59.555 45.833 16.96 0.00 46.70 3.56
2351 2564 4.311520 ACTAATCCTAACCCCCAACAAC 57.688 45.455 0.00 0.00 0.00 3.32
2464 2678 6.452242 TCTCACACGCAGAATAACTTCTTTA 58.548 36.000 0.00 0.00 39.78 1.85
2514 2728 6.939730 TGTGAACAATAACTGCTAATCCTCAA 59.060 34.615 0.00 0.00 0.00 3.02
2520 2734 7.147302 ACAATAACTGCTAATCCTCAACCCTAT 60.147 37.037 0.00 0.00 0.00 2.57
2584 2798 6.127101 TGTAGTACTATGTGCAGTAGGATGT 58.873 40.000 5.75 0.00 31.73 3.06
2645 2860 8.470002 AGATTTAAAGGGTTCATCAACATAAGC 58.530 33.333 0.00 0.00 33.70 3.09
2659 2874 7.987268 TCAACATAAGCAGTACTTCTTATCG 57.013 36.000 20.63 17.84 39.97 2.92
2788 3009 4.430137 TTGTAGCCTCGTGTAACAGTAG 57.570 45.455 0.00 0.00 35.74 2.57
2876 3100 6.252599 TCCAGCCTGTTATCATCTATGTTT 57.747 37.500 0.00 0.00 0.00 2.83
2877 3101 6.662755 TCCAGCCTGTTATCATCTATGTTTT 58.337 36.000 0.00 0.00 0.00 2.43
2878 3102 7.118723 TCCAGCCTGTTATCATCTATGTTTTT 58.881 34.615 0.00 0.00 0.00 1.94
2905 3129 4.976864 TGCTGGCATGTTATCATCTATGT 58.023 39.130 0.00 0.00 31.15 2.29
2906 3130 5.379187 TGCTGGCATGTTATCATCTATGTT 58.621 37.500 0.00 0.00 31.15 2.71
2913 3137 8.499162 GGCATGTTATCATCTATGTTGACTAAC 58.501 37.037 0.00 0.00 33.15 2.34
3191 3418 3.261137 ACTGAAGTAGCCAAGGAGGTAAC 59.739 47.826 0.00 0.00 40.61 2.50
3348 3623 8.952278 TGTAACATTAATTACCAAGTCCATGAC 58.048 33.333 0.00 0.00 34.67 3.06
3416 3697 3.826729 GCTACATGGGTTCTTTTTCACCT 59.173 43.478 0.00 0.00 33.09 4.00
3479 3760 4.318332 TCTCGCTCATTTTGTCATTCTGT 58.682 39.130 0.00 0.00 0.00 3.41
3480 3761 4.756642 TCTCGCTCATTTTGTCATTCTGTT 59.243 37.500 0.00 0.00 0.00 3.16
3546 3828 2.572290 AGCGCTTTGTTACTTGACCTT 58.428 42.857 2.64 0.00 0.00 3.50
3592 3892 4.654091 AAATGCAGCACACACTAAAACT 57.346 36.364 0.00 0.00 0.00 2.66
3757 4100 3.222603 CCAAAACAGGGCTAAGACAACT 58.777 45.455 0.00 0.00 0.00 3.16
3777 4122 8.761575 ACAACTGCAAGAAAAATATTACATGG 57.238 30.769 0.00 0.00 37.43 3.66
3804 4149 8.097038 TGCCTCCTGCTTCACTAATTATATTAG 58.903 37.037 5.18 5.18 42.00 1.73
3811 4157 6.872020 GCTTCACTAATTATATTAGCGGACCA 59.128 38.462 6.39 0.00 0.00 4.02
3822 4168 7.855784 ATATTAGCGGACCATCATCCATATA 57.144 36.000 0.00 0.00 38.87 0.86
3823 4169 6.560003 ATTAGCGGACCATCATCCATATAA 57.440 37.500 0.00 0.00 38.87 0.98
3825 4171 5.028549 AGCGGACCATCATCCATATAATC 57.971 43.478 0.00 0.00 38.87 1.75
3892 4243 4.004348 GACGCTCAGTCCTCCTCA 57.996 61.111 0.00 0.00 43.95 3.86
3907 4258 4.124351 TCACGCCGACGGATCCAC 62.124 66.667 20.50 4.15 46.04 4.02
3939 4290 8.367911 TCCTAGCTTGGATATAACATGTACAAG 58.632 37.037 13.28 8.55 37.48 3.16
3944 4709 9.224267 GCTTGGATATAACATGTACAAGATCAT 57.776 33.333 18.83 0.00 36.79 2.45
3980 4748 7.437862 TCCTTTTAAAGACACAATCATTGCAAC 59.562 33.333 0.00 0.00 0.00 4.17
4056 4828 7.125659 TGGTAGGAATATCTCACAATTGACTCA 59.874 37.037 13.59 0.00 0.00 3.41
4072 4861 5.664294 TGACTCATATTTTGCAGGCAATT 57.336 34.783 7.62 1.73 35.70 2.32
4204 4993 2.287909 GGTGAAACGCTTTGTTATGGCA 60.288 45.455 0.00 0.00 40.84 4.92
4319 5133 9.278734 GTTCAGTTAGCTAAGATTTAACAATGC 57.721 33.333 6.38 0.00 31.38 3.56
4320 5134 7.684670 TCAGTTAGCTAAGATTTAACAATGCG 58.315 34.615 6.38 0.00 31.38 4.73
4321 5135 6.907212 CAGTTAGCTAAGATTTAACAATGCGG 59.093 38.462 6.38 0.00 31.38 5.69
4336 5150 1.746615 GCGGGATGCTTGCAGAGAA 60.747 57.895 0.87 0.00 41.73 2.87
4485 5548 4.026744 CCTTGATCCAGGTTAGTCTCTCA 58.973 47.826 4.61 0.00 0.00 3.27
4486 5549 4.099266 CCTTGATCCAGGTTAGTCTCTCAG 59.901 50.000 4.61 0.00 0.00 3.35
4487 5550 4.592997 TGATCCAGGTTAGTCTCTCAGA 57.407 45.455 0.00 0.00 0.00 3.27
4488 5551 4.531854 TGATCCAGGTTAGTCTCTCAGAG 58.468 47.826 0.00 0.00 0.00 3.35
4489 5552 4.228438 TGATCCAGGTTAGTCTCTCAGAGA 59.772 45.833 0.00 0.00 36.22 3.10
4490 5553 4.659529 TCCAGGTTAGTCTCTCAGAGAA 57.340 45.455 5.76 0.00 40.59 2.87
4491 5554 4.337145 TCCAGGTTAGTCTCTCAGAGAAC 58.663 47.826 5.76 0.70 40.59 3.01
4492 5555 3.445805 CCAGGTTAGTCTCTCAGAGAACC 59.554 52.174 14.22 14.22 40.59 3.62
4493 5556 3.127895 CAGGTTAGTCTCTCAGAGAACCG 59.872 52.174 15.58 8.99 42.25 4.44
4494 5557 3.009253 AGGTTAGTCTCTCAGAGAACCGA 59.991 47.826 15.58 0.00 42.25 4.69
4495 5558 3.757493 GGTTAGTCTCTCAGAGAACCGAA 59.243 47.826 5.76 0.00 40.59 4.30
4496 5559 4.379708 GGTTAGTCTCTCAGAGAACCGAAC 60.380 50.000 5.76 7.74 40.59 3.95
4497 5560 3.149005 AGTCTCTCAGAGAACCGAACT 57.851 47.619 5.76 0.00 40.59 3.01
4498 5561 3.492337 AGTCTCTCAGAGAACCGAACTT 58.508 45.455 5.76 0.00 40.59 2.66
4499 5562 3.254657 AGTCTCTCAGAGAACCGAACTTG 59.745 47.826 5.76 0.00 40.59 3.16
4500 5563 2.029828 TCTCTCAGAGAACCGAACTTGC 60.030 50.000 0.32 0.00 35.59 4.01
4501 5564 1.063806 CTCAGAGAACCGAACTTGCG 58.936 55.000 0.00 0.00 0.00 4.85
4502 5565 0.671796 TCAGAGAACCGAACTTGCGA 59.328 50.000 0.00 0.00 0.00 5.10
4503 5566 0.784778 CAGAGAACCGAACTTGCGAC 59.215 55.000 0.00 0.00 0.00 5.19
4504 5567 0.319641 AGAGAACCGAACTTGCGACC 60.320 55.000 0.00 0.00 0.00 4.79
4505 5568 0.319641 GAGAACCGAACTTGCGACCT 60.320 55.000 0.00 0.00 0.00 3.85
4506 5569 0.319641 AGAACCGAACTTGCGACCTC 60.320 55.000 0.00 0.00 0.00 3.85
4507 5570 0.319641 GAACCGAACTTGCGACCTCT 60.320 55.000 0.00 0.00 0.00 3.69
4508 5571 0.319641 AACCGAACTTGCGACCTCTC 60.320 55.000 0.00 0.00 0.00 3.20
4509 5572 1.446272 CCGAACTTGCGACCTCTCC 60.446 63.158 0.00 0.00 0.00 3.71
4510 5573 1.289066 CGAACTTGCGACCTCTCCA 59.711 57.895 0.00 0.00 0.00 3.86
4511 5574 1.009389 CGAACTTGCGACCTCTCCAC 61.009 60.000 0.00 0.00 0.00 4.02
4512 5575 0.670854 GAACTTGCGACCTCTCCACC 60.671 60.000 0.00 0.00 0.00 4.61
4513 5576 1.407656 AACTTGCGACCTCTCCACCA 61.408 55.000 0.00 0.00 0.00 4.17
4514 5577 1.079543 CTTGCGACCTCTCCACCAG 60.080 63.158 0.00 0.00 0.00 4.00
4515 5578 3.240134 TTGCGACCTCTCCACCAGC 62.240 63.158 0.00 0.00 0.00 4.85
4516 5579 4.803426 GCGACCTCTCCACCAGCG 62.803 72.222 0.00 0.00 0.00 5.18
4517 5580 4.135153 CGACCTCTCCACCAGCGG 62.135 72.222 0.00 0.00 32.53 5.52
4518 5581 3.775654 GACCTCTCCACCAGCGGG 61.776 72.222 0.00 0.00 41.29 6.13
4524 5587 4.974438 TCCACCAGCGGGGAGGTT 62.974 66.667 8.08 0.00 46.69 3.50
4525 5588 4.722700 CCACCAGCGGGGAGGTTG 62.723 72.222 8.08 0.00 42.10 3.77
4526 5589 3.636231 CACCAGCGGGGAGGTTGA 61.636 66.667 8.08 0.00 41.15 3.18
4527 5590 3.322466 ACCAGCGGGGAGGTTGAG 61.322 66.667 8.08 0.00 41.15 3.02
4528 5591 4.101448 CCAGCGGGGAGGTTGAGG 62.101 72.222 0.00 0.00 40.01 3.86
4529 5592 4.101448 CAGCGGGGAGGTTGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
4530 5593 4.332543 AGCGGGGAGGTTGAGGGA 62.333 66.667 0.00 0.00 0.00 4.20
4531 5594 3.327404 GCGGGGAGGTTGAGGGAA 61.327 66.667 0.00 0.00 0.00 3.97
4532 5595 2.680370 GCGGGGAGGTTGAGGGAAT 61.680 63.158 0.00 0.00 0.00 3.01
4533 5596 1.224592 CGGGGAGGTTGAGGGAATG 59.775 63.158 0.00 0.00 0.00 2.67
4534 5597 1.562672 CGGGGAGGTTGAGGGAATGT 61.563 60.000 0.00 0.00 0.00 2.71
4535 5598 0.704664 GGGGAGGTTGAGGGAATGTT 59.295 55.000 0.00 0.00 0.00 2.71
4536 5599 1.920351 GGGGAGGTTGAGGGAATGTTA 59.080 52.381 0.00 0.00 0.00 2.41
4537 5600 2.514160 GGGGAGGTTGAGGGAATGTTAT 59.486 50.000 0.00 0.00 0.00 1.89
4538 5601 3.720002 GGGGAGGTTGAGGGAATGTTATA 59.280 47.826 0.00 0.00 0.00 0.98
4539 5602 4.445879 GGGGAGGTTGAGGGAATGTTATAC 60.446 50.000 0.00 0.00 0.00 1.47
4540 5603 4.445879 GGGAGGTTGAGGGAATGTTATACC 60.446 50.000 0.00 0.00 0.00 2.73
4541 5604 4.165372 GGAGGTTGAGGGAATGTTATACCA 59.835 45.833 0.00 0.00 0.00 3.25
4542 5605 5.112129 AGGTTGAGGGAATGTTATACCAC 57.888 43.478 0.00 0.00 0.00 4.16
4543 5606 4.788617 AGGTTGAGGGAATGTTATACCACT 59.211 41.667 0.00 0.00 0.00 4.00
4544 5607 5.968167 AGGTTGAGGGAATGTTATACCACTA 59.032 40.000 0.00 0.00 0.00 2.74
4545 5608 6.099845 AGGTTGAGGGAATGTTATACCACTAG 59.900 42.308 0.00 0.00 0.00 2.57
4546 5609 6.289064 GTTGAGGGAATGTTATACCACTAGG 58.711 44.000 0.00 0.00 42.21 3.02
4547 5610 4.347000 TGAGGGAATGTTATACCACTAGGC 59.653 45.833 0.00 0.00 39.06 3.93
4548 5611 4.567857 AGGGAATGTTATACCACTAGGCT 58.432 43.478 0.00 0.00 39.06 4.58
4549 5612 5.723355 AGGGAATGTTATACCACTAGGCTA 58.277 41.667 0.00 0.00 39.06 3.93
4550 5613 5.780793 AGGGAATGTTATACCACTAGGCTAG 59.219 44.000 19.83 19.83 39.06 3.42
4551 5614 5.046520 GGGAATGTTATACCACTAGGCTAGG 60.047 48.000 24.57 12.01 39.06 3.02
4552 5615 5.778750 GGAATGTTATACCACTAGGCTAGGA 59.221 44.000 24.57 8.13 39.06 2.94
4553 5616 6.071278 GGAATGTTATACCACTAGGCTAGGAG 60.071 46.154 24.57 17.07 39.06 3.69
4554 5617 4.737578 TGTTATACCACTAGGCTAGGAGG 58.262 47.826 24.57 24.82 39.06 4.30
4555 5618 4.169461 TGTTATACCACTAGGCTAGGAGGT 59.831 45.833 30.78 30.78 40.14 3.85
4556 5619 3.529216 ATACCACTAGGCTAGGAGGTC 57.471 52.381 31.50 0.00 38.62 3.85
4557 5620 1.008403 ACCACTAGGCTAGGAGGTCA 58.992 55.000 26.04 0.00 39.06 4.02
4558 5621 1.576272 ACCACTAGGCTAGGAGGTCAT 59.424 52.381 26.04 11.29 39.06 3.06
4559 5622 2.022918 ACCACTAGGCTAGGAGGTCATT 60.023 50.000 26.04 11.01 39.06 2.57
4560 5623 3.041946 CCACTAGGCTAGGAGGTCATTT 58.958 50.000 24.57 0.00 0.00 2.32
4561 5624 3.456277 CCACTAGGCTAGGAGGTCATTTT 59.544 47.826 24.57 0.00 0.00 1.82
4562 5625 4.446371 CACTAGGCTAGGAGGTCATTTTG 58.554 47.826 24.57 6.76 0.00 2.44
4563 5626 3.456277 ACTAGGCTAGGAGGTCATTTTGG 59.544 47.826 24.57 0.00 0.00 3.28
4564 5627 2.279173 AGGCTAGGAGGTCATTTTGGT 58.721 47.619 0.00 0.00 0.00 3.67
4565 5628 2.649816 AGGCTAGGAGGTCATTTTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
4566 5629 3.850173 AGGCTAGGAGGTCATTTTGGTTA 59.150 43.478 0.00 0.00 0.00 2.85
4567 5630 4.291249 AGGCTAGGAGGTCATTTTGGTTAA 59.709 41.667 0.00 0.00 0.00 2.01
4568 5631 5.014202 GGCTAGGAGGTCATTTTGGTTAAA 58.986 41.667 0.00 0.00 0.00 1.52
4569 5632 5.105877 GGCTAGGAGGTCATTTTGGTTAAAC 60.106 44.000 0.00 0.00 0.00 2.01
4570 5633 5.710567 GCTAGGAGGTCATTTTGGTTAAACT 59.289 40.000 0.00 0.00 0.00 2.66
4571 5634 6.349363 GCTAGGAGGTCATTTTGGTTAAACTG 60.349 42.308 0.00 0.00 0.00 3.16
4572 5635 5.454966 AGGAGGTCATTTTGGTTAAACTGT 58.545 37.500 0.00 0.00 30.87 3.55
4573 5636 5.301805 AGGAGGTCATTTTGGTTAAACTGTG 59.698 40.000 0.00 0.00 30.87 3.66
4574 5637 5.508994 GGAGGTCATTTTGGTTAAACTGTGG 60.509 44.000 0.00 0.00 30.87 4.17
4575 5638 4.959839 AGGTCATTTTGGTTAAACTGTGGT 59.040 37.500 0.00 0.00 30.87 4.16
4576 5639 5.423931 AGGTCATTTTGGTTAAACTGTGGTT 59.576 36.000 0.00 0.00 37.24 3.67
4577 5640 5.751509 GGTCATTTTGGTTAAACTGTGGTTC 59.248 40.000 0.00 0.00 34.14 3.62
4578 5641 6.334202 GTCATTTTGGTTAAACTGTGGTTCA 58.666 36.000 0.00 0.00 34.14 3.18
4579 5642 6.814146 GTCATTTTGGTTAAACTGTGGTTCAA 59.186 34.615 0.00 0.00 34.14 2.69
4580 5643 6.814146 TCATTTTGGTTAAACTGTGGTTCAAC 59.186 34.615 0.00 0.00 33.90 3.18
4581 5644 5.723672 TTTGGTTAAACTGTGGTTCAACA 57.276 34.783 0.00 0.00 35.78 3.33
4582 5645 5.923733 TTGGTTAAACTGTGGTTCAACAT 57.076 34.783 0.00 0.00 35.78 2.71
4583 5646 5.255710 TGGTTAAACTGTGGTTCAACATG 57.744 39.130 0.00 0.00 35.78 3.21
4584 5647 4.707448 TGGTTAAACTGTGGTTCAACATGT 59.293 37.500 0.00 0.00 35.78 3.21
4585 5648 5.886474 TGGTTAAACTGTGGTTCAACATGTA 59.114 36.000 0.00 0.00 35.78 2.29
4586 5649 6.547880 TGGTTAAACTGTGGTTCAACATGTAT 59.452 34.615 0.00 0.00 35.78 2.29
4587 5650 7.720074 TGGTTAAACTGTGGTTCAACATGTATA 59.280 33.333 0.00 0.00 35.78 1.47
4588 5651 8.736244 GGTTAAACTGTGGTTCAACATGTATAT 58.264 33.333 0.00 0.00 35.78 0.86
4638 5701 9.534565 TTCAAAAATTGATTTACATTTCGTCCA 57.465 25.926 0.00 0.00 39.84 4.02
4639 5702 9.534565 TCAAAAATTGATTTACATTTCGTCCAA 57.465 25.926 0.00 0.00 34.08 3.53
4643 5706 9.541143 AAATTGATTTACATTTCGTCCAAAAGT 57.459 25.926 0.00 0.00 30.99 2.66
4644 5707 9.541143 AATTGATTTACATTTCGTCCAAAAGTT 57.459 25.926 0.00 0.00 28.90 2.66
4645 5708 7.922505 TGATTTACATTTCGTCCAAAAGTTG 57.077 32.000 0.00 0.00 28.90 3.16
4646 5709 7.484975 TGATTTACATTTCGTCCAAAAGTTGT 58.515 30.769 0.00 0.00 28.90 3.32
4647 5710 7.976734 TGATTTACATTTCGTCCAAAAGTTGTT 59.023 29.630 0.00 0.00 28.90 2.83
4648 5711 7.743520 TTTACATTTCGTCCAAAAGTTGTTC 57.256 32.000 0.00 0.00 28.90 3.18
4649 5712 4.678622 ACATTTCGTCCAAAAGTTGTTCC 58.321 39.130 0.00 0.00 0.00 3.62
4650 5713 3.408288 TTTCGTCCAAAAGTTGTTCCG 57.592 42.857 0.00 0.00 0.00 4.30
4651 5714 2.027003 TCGTCCAAAAGTTGTTCCGT 57.973 45.000 0.00 0.00 0.00 4.69
4652 5715 3.176552 TCGTCCAAAAGTTGTTCCGTA 57.823 42.857 0.00 0.00 0.00 4.02
4653 5716 3.731089 TCGTCCAAAAGTTGTTCCGTAT 58.269 40.909 0.00 0.00 0.00 3.06
4654 5717 4.128643 TCGTCCAAAAGTTGTTCCGTATT 58.871 39.130 0.00 0.00 0.00 1.89
4655 5718 4.575645 TCGTCCAAAAGTTGTTCCGTATTT 59.424 37.500 0.00 0.00 0.00 1.40
4656 5719 5.066246 TCGTCCAAAAGTTGTTCCGTATTTT 59.934 36.000 0.00 0.00 0.00 1.82
4657 5720 5.744819 CGTCCAAAAGTTGTTCCGTATTTTT 59.255 36.000 0.00 0.00 0.00 1.94
4658 5721 6.291374 CGTCCAAAAGTTGTTCCGTATTTTTG 60.291 38.462 0.00 0.00 36.06 2.44
4659 5722 6.280537 CCAAAAGTTGTTCCGTATTTTTGG 57.719 37.500 10.89 10.89 44.37 3.28
4660 5723 5.813157 CCAAAAGTTGTTCCGTATTTTTGGT 59.187 36.000 14.99 0.00 44.57 3.67
4661 5724 6.314152 CCAAAAGTTGTTCCGTATTTTTGGTT 59.686 34.615 14.99 0.00 44.57 3.67
4662 5725 7.491696 CCAAAAGTTGTTCCGTATTTTTGGTTA 59.508 33.333 14.99 0.00 44.57 2.85
4663 5726 7.990541 AAAGTTGTTCCGTATTTTTGGTTAC 57.009 32.000 0.00 0.00 0.00 2.50
4664 5727 6.075762 AGTTGTTCCGTATTTTTGGTTACC 57.924 37.500 0.00 0.00 0.00 2.85
4665 5728 4.745837 TGTTCCGTATTTTTGGTTACCG 57.254 40.909 0.00 0.00 0.00 4.02
4666 5729 4.133078 TGTTCCGTATTTTTGGTTACCGT 58.867 39.130 0.00 0.00 0.00 4.83
4667 5730 4.024218 TGTTCCGTATTTTTGGTTACCGTG 60.024 41.667 0.00 0.00 0.00 4.94
4668 5731 3.072944 TCCGTATTTTTGGTTACCGTGG 58.927 45.455 0.00 0.00 0.00 4.94
4669 5732 2.813172 CCGTATTTTTGGTTACCGTGGT 59.187 45.455 0.00 0.00 0.00 4.16
4670 5733 3.999663 CCGTATTTTTGGTTACCGTGGTA 59.000 43.478 0.00 0.00 0.00 3.25
4671 5734 4.453819 CCGTATTTTTGGTTACCGTGGTAA 59.546 41.667 7.40 7.40 38.14 2.85
4681 5744 4.799564 TTACCGTGGTAACCGAGTATTT 57.200 40.909 7.40 0.00 35.88 1.40
4682 5745 3.683365 ACCGTGGTAACCGAGTATTTT 57.317 42.857 0.00 0.00 32.87 1.82
4683 5746 3.328505 ACCGTGGTAACCGAGTATTTTG 58.671 45.455 0.00 0.00 32.87 2.44
4684 5747 2.674357 CCGTGGTAACCGAGTATTTTGG 59.326 50.000 0.00 0.00 36.29 3.28
4685 5748 3.328505 CGTGGTAACCGAGTATTTTGGT 58.671 45.455 0.00 0.00 46.19 3.67
4686 5749 3.123959 CGTGGTAACCGAGTATTTTGGTG 59.876 47.826 0.00 0.00 43.21 4.17
4687 5750 3.075884 TGGTAACCGAGTATTTTGGTGC 58.924 45.455 0.00 0.00 43.21 5.01
4688 5751 2.421073 GGTAACCGAGTATTTTGGTGCC 59.579 50.000 0.00 0.00 43.21 5.01
4689 5752 1.541379 AACCGAGTATTTTGGTGCCC 58.459 50.000 0.00 0.00 43.21 5.36
4690 5753 0.323087 ACCGAGTATTTTGGTGCCCC 60.323 55.000 0.00 0.00 42.35 5.80
4691 5754 0.322997 CCGAGTATTTTGGTGCCCCA 60.323 55.000 0.00 0.00 39.65 4.96
4692 5755 1.684869 CCGAGTATTTTGGTGCCCCAT 60.685 52.381 0.00 0.00 41.49 4.00
4693 5756 1.405105 CGAGTATTTTGGTGCCCCATG 59.595 52.381 0.00 0.00 41.49 3.66
4694 5757 2.733956 GAGTATTTTGGTGCCCCATGA 58.266 47.619 0.00 0.00 41.49 3.07
4695 5758 2.689983 GAGTATTTTGGTGCCCCATGAG 59.310 50.000 0.00 0.00 41.49 2.90
4696 5759 2.311542 AGTATTTTGGTGCCCCATGAGA 59.688 45.455 0.00 0.00 41.49 3.27
4697 5760 2.323999 ATTTTGGTGCCCCATGAGAA 57.676 45.000 0.00 0.00 41.49 2.87
4698 5761 2.094100 TTTTGGTGCCCCATGAGAAA 57.906 45.000 0.00 0.00 41.49 2.52
4699 5762 2.094100 TTTGGTGCCCCATGAGAAAA 57.906 45.000 0.00 0.00 41.49 2.29
4700 5763 2.094100 TTGGTGCCCCATGAGAAAAA 57.906 45.000 0.00 0.00 41.49 1.94
4723 5786 7.423844 AAATCATCCTTAGGAATCCAAAACC 57.576 36.000 4.56 0.00 34.34 3.27
4724 5787 5.796502 TCATCCTTAGGAATCCAAAACCT 57.203 39.130 4.56 0.00 34.34 3.50
4725 5788 6.152638 TCATCCTTAGGAATCCAAAACCTT 57.847 37.500 4.56 0.00 34.34 3.50
4726 5789 5.951747 TCATCCTTAGGAATCCAAAACCTTG 59.048 40.000 4.56 0.00 34.34 3.61
4727 5790 5.127682 CATCCTTAGGAATCCAAAACCTTGG 59.872 44.000 4.56 0.00 43.83 3.61
4728 5791 5.222547 ATCCTTAGGAATCCAAAACCTTGGT 60.223 40.000 4.56 0.00 43.36 3.67
4729 5792 7.033267 ATCCTTAGGAATCCAAAACCTTGGTC 61.033 42.308 4.56 0.00 43.36 4.02
4730 5793 9.136902 ATCCTTAGGAATCCAAAACCTTGGTCT 62.137 40.741 4.56 1.93 43.36 3.85
4746 5809 6.180472 CCTTGGTCTATCTACAAACACCATT 58.820 40.000 0.00 0.00 33.93 3.16
4748 5811 7.280205 CCTTGGTCTATCTACAAACACCATTAC 59.720 40.741 0.00 0.00 33.93 1.89
4790 5853 5.351465 ACGATAGCACCACACTTTCTTAATG 59.649 40.000 0.00 0.00 42.67 1.90
5167 6290 8.876275 AGACGTTTTTACATTAGTGTACAAGA 57.124 30.769 0.00 0.00 40.40 3.02
5256 6438 1.955778 TGTTGGCAGAGAACACATTGG 59.044 47.619 0.00 0.00 0.00 3.16
5273 6455 3.500448 TTGGCAGATGACCAAGTAACA 57.500 42.857 5.09 0.00 42.23 2.41
5394 6576 2.763448 AGCTGAGCTTACCCTTCTAGTG 59.237 50.000 0.00 0.00 33.89 2.74
5396 6578 3.429684 GCTGAGCTTACCCTTCTAGTGAC 60.430 52.174 0.00 0.00 0.00 3.67
5397 6579 4.020543 CTGAGCTTACCCTTCTAGTGACT 58.979 47.826 0.00 0.00 0.00 3.41
5398 6580 3.764434 TGAGCTTACCCTTCTAGTGACTG 59.236 47.826 0.00 0.00 0.00 3.51
5421 6606 0.101219 GTTGCTTTCGGGGATGCATC 59.899 55.000 18.81 18.81 35.27 3.91
5441 6626 6.072508 TGCATCTTTAACACCAGATTTCTCAC 60.073 38.462 0.00 0.00 0.00 3.51
5482 6677 2.607750 ATCCAGGAGGTGTGCGGT 60.608 61.111 0.00 0.00 35.89 5.68
5599 6794 1.003118 CCTCCAAGGTTCGTCCATGAA 59.997 52.381 0.00 0.00 37.10 2.57
5621 6816 4.063967 CCACACTCGCCGGCTACA 62.064 66.667 26.68 7.19 0.00 2.74
5810 7048 2.043852 GAGCCCGAGGAGTGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
5958 7196 0.033504 GAGGTTCGTGCAGGAGTTCA 59.966 55.000 9.34 0.00 0.00 3.18
6047 7285 2.158652 CCCCCTCTACGTGTATCTCTCA 60.159 54.545 0.00 0.00 0.00 3.27
6072 7310 0.616111 GAGAGGGAGGCAGTGAAGGA 60.616 60.000 0.00 0.00 0.00 3.36
6074 7312 1.904990 GAGGGAGGCAGTGAAGGACC 61.905 65.000 0.00 0.00 0.00 4.46
6113 7351 1.101049 ACAGTGGAGTTGGCCAAACG 61.101 55.000 22.47 12.96 44.04 3.60
6212 7450 1.667722 GCTGGAGCTTTTGGGGTTG 59.332 57.895 0.00 0.00 38.21 3.77
6280 7518 6.574350 TGGTTGGTTTTCGTAACATCAAATT 58.426 32.000 5.74 0.00 0.00 1.82
6281 7519 7.713750 TGGTTGGTTTTCGTAACATCAAATTA 58.286 30.769 5.74 0.00 0.00 1.40
6282 7520 8.361139 TGGTTGGTTTTCGTAACATCAAATTAT 58.639 29.630 5.74 0.00 0.00 1.28
6283 7521 9.198837 GGTTGGTTTTCGTAACATCAAATTATT 57.801 29.630 5.74 0.00 0.00 1.40
6285 7523 8.233692 TGGTTTTCGTAACATCAAATTATTGC 57.766 30.769 5.74 0.00 36.45 3.56
6286 7524 8.085296 TGGTTTTCGTAACATCAAATTATTGCT 58.915 29.630 5.74 0.00 36.45 3.91
6287 7525 8.921670 GGTTTTCGTAACATCAAATTATTGCTT 58.078 29.630 5.74 0.00 36.45 3.91
6354 7592 2.735134 ACGGCGACAGTCAATAGTTTTC 59.265 45.455 16.62 0.00 0.00 2.29
6542 7905 7.704789 AGTAACCACAACGTTAAAGTCTTAG 57.295 36.000 0.00 0.00 30.25 2.18
6641 8004 3.248171 GTCTGGATCGTGCGTCGC 61.248 66.667 11.10 11.10 39.67 5.19
6658 8022 2.492773 GCACAGGCCACAAGCACTT 61.493 57.895 5.01 0.00 46.50 3.16
6661 8025 0.536006 ACAGGCCACAAGCACTTCTC 60.536 55.000 5.01 0.00 46.50 2.87
6663 8027 2.328099 GGCCACAAGCACTTCTCCG 61.328 63.158 0.00 0.00 46.50 4.63
6706 8073 1.433534 GCACTTCTTCTTCCTCACGG 58.566 55.000 0.00 0.00 0.00 4.94
6775 8149 0.630673 ACAAGCATGATGCCCCCTTA 59.369 50.000 14.72 0.00 46.52 2.69
6810 8184 3.528370 CGACGGGGCGGAGAAGAT 61.528 66.667 0.00 0.00 0.00 2.40
6883 8257 1.065358 CGCTGTTAACCGTCGATGTT 58.935 50.000 2.48 6.23 0.00 2.71
6900 8274 1.067974 TGTTTCACGAGTCACGACCAT 59.932 47.619 0.00 0.00 45.77 3.55
7018 8392 1.496060 ACTGGACAACTCTGTGACCA 58.504 50.000 0.00 0.00 40.36 4.02
7033 8407 1.689813 TGACCAAAGAGCTACAACCGA 59.310 47.619 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.903798 CCTGTGAGCTGAAGGAGATTC 58.096 52.381 0.00 0.00 38.50 2.52
1 2 1.065564 GCCTGTGAGCTGAAGGAGATT 60.066 52.381 9.60 0.00 32.43 2.40
2 3 0.540923 GCCTGTGAGCTGAAGGAGAT 59.459 55.000 9.60 0.00 32.43 2.75
3 4 0.543883 AGCCTGTGAGCTGAAGGAGA 60.544 55.000 9.60 0.00 42.95 3.71
4 5 1.134848 GTAGCCTGTGAGCTGAAGGAG 60.135 57.143 9.60 0.00 44.67 3.69
5 6 0.898320 GTAGCCTGTGAGCTGAAGGA 59.102 55.000 9.60 0.00 44.67 3.36
6 7 0.901124 AGTAGCCTGTGAGCTGAAGG 59.099 55.000 0.00 0.00 44.67 3.46
7 8 2.758736 AAGTAGCCTGTGAGCTGAAG 57.241 50.000 0.00 0.00 44.67 3.02
8 9 3.141398 CAAAAGTAGCCTGTGAGCTGAA 58.859 45.455 0.00 0.00 44.67 3.02
9 10 2.368548 TCAAAAGTAGCCTGTGAGCTGA 59.631 45.455 0.00 0.00 44.67 4.26
10 11 2.771089 TCAAAAGTAGCCTGTGAGCTG 58.229 47.619 0.00 0.00 44.67 4.24
12 13 2.680339 GGATCAAAAGTAGCCTGTGAGC 59.320 50.000 0.00 0.00 0.00 4.26
13 14 3.686726 GTGGATCAAAAGTAGCCTGTGAG 59.313 47.826 0.00 0.00 0.00 3.51
14 15 3.072330 TGTGGATCAAAAGTAGCCTGTGA 59.928 43.478 0.00 0.00 0.00 3.58
15 16 3.411446 TGTGGATCAAAAGTAGCCTGTG 58.589 45.455 0.00 0.00 0.00 3.66
16 17 3.788227 TGTGGATCAAAAGTAGCCTGT 57.212 42.857 0.00 0.00 0.00 4.00
17 18 5.404946 CAAATGTGGATCAAAAGTAGCCTG 58.595 41.667 0.00 0.00 0.00 4.85
18 19 4.082026 GCAAATGTGGATCAAAAGTAGCCT 60.082 41.667 0.00 0.00 0.00 4.58
19 20 4.082026 AGCAAATGTGGATCAAAAGTAGCC 60.082 41.667 0.00 0.00 0.00 3.93
20 21 5.064441 AGCAAATGTGGATCAAAAGTAGC 57.936 39.130 0.00 0.00 0.00 3.58
21 22 6.506500 AGAGCAAATGTGGATCAAAAGTAG 57.493 37.500 0.00 0.00 0.00 2.57
22 23 8.579850 AATAGAGCAAATGTGGATCAAAAGTA 57.420 30.769 0.00 0.00 0.00 2.24
23 24 7.395489 AGAATAGAGCAAATGTGGATCAAAAGT 59.605 33.333 0.00 0.00 0.00 2.66
24 25 7.769220 AGAATAGAGCAAATGTGGATCAAAAG 58.231 34.615 0.00 0.00 0.00 2.27
25 26 7.707624 AGAATAGAGCAAATGTGGATCAAAA 57.292 32.000 0.00 0.00 0.00 2.44
26 27 7.177216 ACAAGAATAGAGCAAATGTGGATCAAA 59.823 33.333 0.00 0.00 0.00 2.69
43 44 2.317040 TCGGGCTAGGGACAAGAATAG 58.683 52.381 0.00 0.00 0.00 1.73
79 80 1.772819 AACTGGCTGGTCTCTGGTGG 61.773 60.000 0.00 0.00 0.00 4.61
82 83 0.671781 CGAAACTGGCTGGTCTCTGG 60.672 60.000 0.00 0.00 0.00 3.86
84 85 0.034059 CACGAAACTGGCTGGTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
85 86 0.033504 TCACGAAACTGGCTGGTCTC 59.966 55.000 0.00 0.00 0.00 3.36
117 118 5.773239 TTTTCTTCGCTAAAGATACCACG 57.227 39.130 0.00 0.00 43.50 4.94
126 127 5.346822 GTCGGACTGTATTTTCTTCGCTAAA 59.653 40.000 0.00 0.00 0.00 1.85
131 132 3.846360 AGGTCGGACTGTATTTTCTTCG 58.154 45.455 8.23 0.00 0.00 3.79
147 148 9.840427 AAAACTATTTGAATGAATTGTAGGTCG 57.160 29.630 0.00 0.00 0.00 4.79
204 206 7.637709 TGAAATAACATCCGTGATATTCTCG 57.362 36.000 0.00 0.00 33.68 4.04
205 207 9.208022 TGATGAAATAACATCCGTGATATTCTC 57.792 33.333 0.00 0.00 43.96 2.87
206 208 9.730705 ATGATGAAATAACATCCGTGATATTCT 57.269 29.630 0.00 0.00 43.96 2.40
207 209 9.764870 CATGATGAAATAACATCCGTGATATTC 57.235 33.333 0.00 0.00 43.96 1.75
208 210 9.506018 TCATGATGAAATAACATCCGTGATATT 57.494 29.630 0.00 0.00 43.96 1.28
209 211 9.506018 TTCATGATGAAATAACATCCGTGATAT 57.494 29.630 5.21 0.00 43.96 1.63
210 212 8.900983 TTCATGATGAAATAACATCCGTGATA 57.099 30.769 5.21 0.00 43.96 2.15
211 213 7.806409 TTCATGATGAAATAACATCCGTGAT 57.194 32.000 5.21 0.00 43.96 3.06
212 214 7.336679 AGTTTCATGATGAAATAACATCCGTGA 59.663 33.333 21.91 0.00 46.55 4.35
213 215 7.475015 AGTTTCATGATGAAATAACATCCGTG 58.525 34.615 21.91 0.00 46.55 4.94
214 216 7.630242 AGTTTCATGATGAAATAACATCCGT 57.370 32.000 21.91 0.00 46.55 4.69
215 217 8.183536 TGAAGTTTCATGATGAAATAACATCCG 58.816 33.333 21.91 0.00 46.55 4.18
216 218 9.294030 GTGAAGTTTCATGATGAAATAACATCC 57.706 33.333 21.91 8.71 46.55 3.51
333 336 1.725803 ACAAAGTACCCGAGAACCCT 58.274 50.000 0.00 0.00 0.00 4.34
356 359 2.824880 CCCGTGAACCACCCCTCAA 61.825 63.158 0.00 0.00 0.00 3.02
357 360 2.676319 TACCCGTGAACCACCCCTCA 62.676 60.000 0.00 0.00 0.00 3.86
359 362 2.204889 TACCCGTGAACCACCCCT 59.795 61.111 0.00 0.00 0.00 4.79
361 364 0.904394 TAGGTACCCGTGAACCACCC 60.904 60.000 8.74 0.00 38.30 4.61
362 365 0.533951 CTAGGTACCCGTGAACCACC 59.466 60.000 8.74 0.00 38.30 4.61
363 366 0.533951 CCTAGGTACCCGTGAACCAC 59.466 60.000 8.74 0.00 38.30 4.16
364 367 0.409092 TCCTAGGTACCCGTGAACCA 59.591 55.000 8.74 0.00 38.30 3.67
370 373 2.610438 TTCAACTCCTAGGTACCCGT 57.390 50.000 8.74 0.00 0.00 5.28
439 442 6.320494 ACTCTATCGCTGTACTAATTGAGG 57.680 41.667 0.00 0.00 0.00 3.86
498 501 3.648982 TGCCGAACTTGCGCACTG 61.649 61.111 11.12 9.10 0.00 3.66
557 560 1.675483 TGCGTTCGTATACCGGTACAT 59.325 47.619 18.55 5.65 37.11 2.29
559 562 1.746760 CTGCGTTCGTATACCGGTAC 58.253 55.000 18.55 6.99 37.11 3.34
611 616 2.252260 CTCCAAAACCAGCACGCG 59.748 61.111 3.53 3.53 0.00 6.01
621 626 0.040514 CGTGTTGCATCGCTCCAAAA 60.041 50.000 6.75 0.00 0.00 2.44
670 675 1.135199 TCGATCAAGCCGAGTACCAAC 60.135 52.381 0.00 0.00 0.00 3.77
671 676 1.135199 GTCGATCAAGCCGAGTACCAA 60.135 52.381 0.00 0.00 36.66 3.67
679 684 2.537560 GCCATGGTCGATCAAGCCG 61.538 63.158 14.67 0.00 0.00 5.52
742 750 1.282930 GGACTTGTTCGTCCGCACTC 61.283 60.000 0.00 0.00 43.56 3.51
817 855 1.004918 ACGCAGTGTTAGCAGGGTC 60.005 57.895 0.00 0.00 42.51 4.46
818 856 3.148084 ACGCAGTGTTAGCAGGGT 58.852 55.556 0.00 0.00 42.51 4.34
834 872 4.602696 GCATGCAGATGCGGCGAC 62.603 66.667 12.98 2.02 45.50 5.19
841 879 4.607955 CTTCAGTTTATGGCATGCAGATG 58.392 43.478 21.36 7.87 0.00 2.90
842 880 3.067742 GCTTCAGTTTATGGCATGCAGAT 59.932 43.478 21.36 13.09 0.00 2.90
843 881 2.424601 GCTTCAGTTTATGGCATGCAGA 59.575 45.455 21.36 5.45 0.00 4.26
844 882 2.793585 CGCTTCAGTTTATGGCATGCAG 60.794 50.000 21.36 4.96 0.00 4.41
867 905 1.101635 AGCTAGCAGATACGGCGTGA 61.102 55.000 24.86 7.25 36.08 4.35
889 927 5.330295 CGCCGGTTCAGTCTACATATATAC 58.670 45.833 1.90 0.00 0.00 1.47
894 932 0.101759 GCGCCGGTTCAGTCTACATA 59.898 55.000 1.90 0.00 0.00 2.29
895 933 1.153628 GCGCCGGTTCAGTCTACAT 60.154 57.895 1.90 0.00 0.00 2.29
896 934 2.260434 GCGCCGGTTCAGTCTACA 59.740 61.111 1.90 0.00 0.00 2.74
897 935 2.092882 GTGCGCCGGTTCAGTCTAC 61.093 63.158 4.18 0.00 0.00 2.59
898 936 2.260434 GTGCGCCGGTTCAGTCTA 59.740 61.111 4.18 0.00 0.00 2.59
950 992 1.337387 GAGTTACTAGCTAGCCGGTGG 59.663 57.143 20.91 0.00 0.00 4.61
959 1001 2.168496 TGTCTTGCCGAGTTACTAGCT 58.832 47.619 8.09 0.00 0.00 3.32
961 1003 3.512680 CCTTGTCTTGCCGAGTTACTAG 58.487 50.000 0.00 0.00 0.00 2.57
962 1004 2.353406 GCCTTGTCTTGCCGAGTTACTA 60.353 50.000 0.00 0.00 0.00 1.82
963 1005 1.608283 GCCTTGTCTTGCCGAGTTACT 60.608 52.381 0.00 0.00 0.00 2.24
964 1006 0.796927 GCCTTGTCTTGCCGAGTTAC 59.203 55.000 0.00 0.00 0.00 2.50
965 1007 0.685097 AGCCTTGTCTTGCCGAGTTA 59.315 50.000 0.00 0.00 0.00 2.24
966 1008 0.685097 TAGCCTTGTCTTGCCGAGTT 59.315 50.000 0.00 0.00 0.00 3.01
967 1009 0.685097 TTAGCCTTGTCTTGCCGAGT 59.315 50.000 0.00 0.00 0.00 4.18
968 1010 1.079503 GTTAGCCTTGTCTTGCCGAG 58.920 55.000 0.00 0.00 0.00 4.63
969 1011 0.321298 GGTTAGCCTTGTCTTGCCGA 60.321 55.000 0.00 0.00 0.00 5.54
1138 1180 6.684555 GCACGAAAAGATTCAGTGTGATTATC 59.315 38.462 0.00 0.00 39.76 1.75
1141 1183 4.516698 AGCACGAAAAGATTCAGTGTGATT 59.483 37.500 0.00 0.00 39.76 2.57
1145 1187 3.496130 CAGAGCACGAAAAGATTCAGTGT 59.504 43.478 0.00 3.80 39.76 3.55
1188 1230 4.348168 ACTCTTACACTTTCACAGGGACAT 59.652 41.667 0.00 0.00 0.00 3.06
1190 1232 4.058817 CACTCTTACACTTTCACAGGGAC 58.941 47.826 0.00 0.00 0.00 4.46
1193 1235 4.073293 ACCACTCTTACACTTTCACAGG 57.927 45.455 0.00 0.00 0.00 4.00
1206 1248 5.130477 TCCTGACTGTAGAAAAACCACTCTT 59.870 40.000 0.00 0.00 0.00 2.85
1224 1266 1.577328 CGTGGGTGCAATGTCCTGAC 61.577 60.000 0.00 0.00 0.00 3.51
1235 1277 4.554723 GCTATATGTTTCAATCGTGGGTGC 60.555 45.833 0.00 0.00 0.00 5.01
1237 1279 4.776349 TGCTATATGTTTCAATCGTGGGT 58.224 39.130 0.00 0.00 0.00 4.51
1265 1307 6.206634 TCGAGCCACAAAGTTTCAGATTTATT 59.793 34.615 0.00 0.00 0.00 1.40
1267 1309 5.060506 TCGAGCCACAAAGTTTCAGATTTA 58.939 37.500 0.00 0.00 0.00 1.40
1270 1312 3.126001 TCGAGCCACAAAGTTTCAGAT 57.874 42.857 0.00 0.00 0.00 2.90
1272 1314 3.904136 AATCGAGCCACAAAGTTTCAG 57.096 42.857 0.00 0.00 0.00 3.02
1275 1317 5.647658 TGATCATAATCGAGCCACAAAGTTT 59.352 36.000 0.00 0.00 34.39 2.66
1276 1318 5.185454 TGATCATAATCGAGCCACAAAGTT 58.815 37.500 0.00 0.00 34.39 2.66
1280 1322 5.589855 ACATTTGATCATAATCGAGCCACAA 59.410 36.000 0.00 0.00 34.39 3.33
1281 1323 5.125356 ACATTTGATCATAATCGAGCCACA 58.875 37.500 0.00 0.00 34.39 4.17
1282 1324 5.679734 ACATTTGATCATAATCGAGCCAC 57.320 39.130 0.00 0.00 34.39 5.01
1283 1325 6.698008 AAACATTTGATCATAATCGAGCCA 57.302 33.333 0.00 0.00 34.39 4.75
1284 1326 7.805071 CCTAAAACATTTGATCATAATCGAGCC 59.195 37.037 0.00 0.00 34.39 4.70
1285 1327 8.345565 ACCTAAAACATTTGATCATAATCGAGC 58.654 33.333 0.00 0.00 34.39 5.03
1286 1328 9.655769 CACCTAAAACATTTGATCATAATCGAG 57.344 33.333 0.00 0.00 34.39 4.04
1287 1329 8.128582 GCACCTAAAACATTTGATCATAATCGA 58.871 33.333 0.00 0.00 34.39 3.59
1288 1330 8.131100 AGCACCTAAAACATTTGATCATAATCG 58.869 33.333 0.00 0.00 34.39 3.34
1289 1331 9.807649 AAGCACCTAAAACATTTGATCATAATC 57.192 29.630 0.00 0.00 0.00 1.75
1290 1332 9.590451 CAAGCACCTAAAACATTTGATCATAAT 57.410 29.630 0.00 0.00 0.00 1.28
1291 1333 8.801299 TCAAGCACCTAAAACATTTGATCATAA 58.199 29.630 0.00 0.00 0.00 1.90
1292 1334 8.347004 TCAAGCACCTAAAACATTTGATCATA 57.653 30.769 0.00 0.00 0.00 2.15
1293 1335 7.230849 TCAAGCACCTAAAACATTTGATCAT 57.769 32.000 0.00 0.00 0.00 2.45
1294 1336 6.647334 TCAAGCACCTAAAACATTTGATCA 57.353 33.333 0.00 0.00 0.00 2.92
1295 1337 7.945033 TTTCAAGCACCTAAAACATTTGATC 57.055 32.000 0.00 0.00 0.00 2.92
1296 1338 8.907222 ATTTTCAAGCACCTAAAACATTTGAT 57.093 26.923 0.00 0.00 0.00 2.57
1297 1339 8.729805 AATTTTCAAGCACCTAAAACATTTGA 57.270 26.923 0.00 0.00 0.00 2.69
1298 1340 9.786105 AAAATTTTCAAGCACCTAAAACATTTG 57.214 25.926 0.00 0.00 0.00 2.32
1299 1341 9.786105 CAAAATTTTCAAGCACCTAAAACATTT 57.214 25.926 0.00 0.00 0.00 2.32
1300 1342 8.404765 CCAAAATTTTCAAGCACCTAAAACATT 58.595 29.630 0.00 0.00 0.00 2.71
1301 1343 7.555914 ACCAAAATTTTCAAGCACCTAAAACAT 59.444 29.630 0.00 0.00 0.00 2.71
1302 1344 6.881602 ACCAAAATTTTCAAGCACCTAAAACA 59.118 30.769 0.00 0.00 0.00 2.83
1303 1345 7.315247 ACCAAAATTTTCAAGCACCTAAAAC 57.685 32.000 0.00 0.00 0.00 2.43
1304 1346 7.627300 GCAACCAAAATTTTCAAGCACCTAAAA 60.627 33.333 0.00 0.00 0.00 1.52
1305 1347 6.183360 GCAACCAAAATTTTCAAGCACCTAAA 60.183 34.615 0.00 0.00 0.00 1.85
1306 1348 5.295540 GCAACCAAAATTTTCAAGCACCTAA 59.704 36.000 0.00 0.00 0.00 2.69
1317 1359 5.033589 TGTCATCTGGCAACCAAAATTTT 57.966 34.783 0.00 0.00 30.80 1.82
1321 1363 2.228582 CGATGTCATCTGGCAACCAAAA 59.771 45.455 11.04 0.00 31.21 2.44
1324 1366 0.392863 CCGATGTCATCTGGCAACCA 60.393 55.000 11.04 0.00 31.21 3.67
1333 1375 4.386867 TGTAAACTCCTCCGATGTCATC 57.613 45.455 2.43 2.43 0.00 2.92
1372 1417 4.333649 GCTTAAACAGTGCAGATATGCTCA 59.666 41.667 14.34 0.00 35.49 4.26
1375 1420 4.621068 TGCTTAAACAGTGCAGATATGC 57.379 40.909 5.09 5.09 32.55 3.14
1377 1422 9.740239 CAAATTATGCTTAAACAGTGCAGATAT 57.260 29.630 0.00 0.00 40.18 1.63
1398 1443 7.067532 TCTGCATACGAACGAAATACAAATT 57.932 32.000 0.14 0.00 0.00 1.82
1400 1445 6.311690 TGATCTGCATACGAACGAAATACAAA 59.688 34.615 0.14 0.00 0.00 2.83
1401 1446 5.808030 TGATCTGCATACGAACGAAATACAA 59.192 36.000 0.14 0.00 0.00 2.41
1403 1448 5.883328 TGATCTGCATACGAACGAAATAC 57.117 39.130 0.14 0.00 0.00 1.89
1404 1449 7.223777 TCAAATGATCTGCATACGAACGAAATA 59.776 33.333 0.14 0.00 35.78 1.40
1405 1450 5.991328 AATGATCTGCATACGAACGAAAT 57.009 34.783 0.14 0.00 35.78 2.17
1406 1451 5.350091 TCAAATGATCTGCATACGAACGAAA 59.650 36.000 0.14 0.00 35.78 3.46
1408 1453 4.429108 TCAAATGATCTGCATACGAACGA 58.571 39.130 0.14 0.00 35.78 3.85
1409 1454 4.777140 TCAAATGATCTGCATACGAACG 57.223 40.909 0.00 0.00 35.78 3.95
1410 1455 6.052840 ACATCAAATGATCTGCATACGAAC 57.947 37.500 0.00 0.00 35.78 3.95
1411 1456 6.682423 AACATCAAATGATCTGCATACGAA 57.318 33.333 0.00 0.00 35.78 3.85
1412 1457 7.967890 ATAACATCAAATGATCTGCATACGA 57.032 32.000 0.00 0.00 35.78 3.43
1413 1458 8.898792 CAAATAACATCAAATGATCTGCATACG 58.101 33.333 0.00 0.00 35.78 3.06
1450 1495 7.384660 TGAACAAATATTTTAGGTGCTTGCAAG 59.615 33.333 22.44 22.44 0.00 4.01
1481 1526 6.811253 AAATTCTGTTACTTCGTGGCATTA 57.189 33.333 0.00 0.00 0.00 1.90
1531 1578 7.322664 CCAAGTTCATTGCACCTACAATAAAT 58.677 34.615 0.00 0.00 38.19 1.40
1537 1584 2.158534 ACCCAAGTTCATTGCACCTACA 60.159 45.455 0.00 0.00 37.60 2.74
1541 1588 1.039856 ACACCCAAGTTCATTGCACC 58.960 50.000 0.00 0.00 37.60 5.01
1587 1634 3.801114 AGTCACAAAAAGGTTCCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
1594 1641 6.844097 TGTTTTTCCTAGTCACAAAAAGGT 57.156 33.333 0.00 0.00 31.35 3.50
1643 1693 5.105106 TCCTCGTTCACCATAAATTAGAGCA 60.105 40.000 0.00 0.00 0.00 4.26
1722 1775 6.441222 AGGAAGGTATTATGTGTGAGAGGTA 58.559 40.000 0.00 0.00 0.00 3.08
1896 2069 5.407407 TGAGGTGGATCTTTTCTCTACAC 57.593 43.478 0.00 0.00 0.00 2.90
1938 2111 0.188342 TGGGAAGGGCTCAGCTTTTT 59.812 50.000 0.00 0.00 0.00 1.94
1988 2161 6.835819 TCTTATATTATGTGACGGAGGGAG 57.164 41.667 0.00 0.00 0.00 4.30
1991 2164 8.833231 AACATTCTTATATTATGTGACGGAGG 57.167 34.615 0.00 0.00 33.10 4.30
2294 2507 2.586258 AGAGCATTCGCATTCGTAGT 57.414 45.000 0.00 0.00 42.27 2.73
2298 2511 6.011879 GTCATATTTAGAGCATTCGCATTCG 58.988 40.000 0.00 0.00 42.27 3.34
2351 2564 5.895636 TTATAAGTTGTCCAGGTGCATTG 57.104 39.130 0.00 0.00 0.00 2.82
2423 2637 7.359595 CGTGTGAGAGGTCAAAATTGATTTTA 58.640 34.615 0.00 0.00 37.86 1.52
2514 2728 9.784531 CTTCTAAATGTACATGATTCATAGGGT 57.215 33.333 9.63 0.00 0.00 4.34
2645 2860 9.737427 AGTATTCATGAACGATAAGAAGTACTG 57.263 33.333 11.07 0.00 0.00 2.74
2761 2981 4.181578 GTTACACGAGGCTACAATCATGT 58.818 43.478 0.00 0.00 43.74 3.21
2762 2982 4.180817 TGTTACACGAGGCTACAATCATG 58.819 43.478 0.00 0.00 0.00 3.07
2788 3009 7.298122 TCTTTTCTCACGTATTTTTCATCAGC 58.702 34.615 0.00 0.00 0.00 4.26
2879 3103 5.664294 AGATGATAACATGCCAGCAAAAA 57.336 34.783 0.00 0.00 36.82 1.94
2880 3104 6.321945 ACATAGATGATAACATGCCAGCAAAA 59.678 34.615 0.00 0.00 36.82 2.44
2881 3105 5.829391 ACATAGATGATAACATGCCAGCAAA 59.171 36.000 0.00 0.00 36.82 3.68
2882 3106 5.379187 ACATAGATGATAACATGCCAGCAA 58.621 37.500 0.00 0.00 36.82 3.91
2883 3107 4.976864 ACATAGATGATAACATGCCAGCA 58.023 39.130 0.00 0.00 36.82 4.41
2884 3108 5.471116 TCAACATAGATGATAACATGCCAGC 59.529 40.000 0.00 0.00 36.82 4.85
2885 3109 6.709397 AGTCAACATAGATGATAACATGCCAG 59.291 38.462 0.00 0.00 36.82 4.85
2886 3110 6.594744 AGTCAACATAGATGATAACATGCCA 58.405 36.000 0.00 0.00 36.82 4.92
2887 3111 8.499162 GTTAGTCAACATAGATGATAACATGCC 58.501 37.037 0.00 0.00 34.31 4.40
2888 3112 9.265901 AGTTAGTCAACATAGATGATAACATGC 57.734 33.333 0.00 0.00 37.10 4.06
2913 3137 9.844790 GATATTTGAGATAGATCAGTCTGACAG 57.155 37.037 10.88 1.73 35.87 3.51
3318 3583 9.968870 TGGACTTGGTAATTAATGTTACAAAAC 57.031 29.630 0.00 0.00 36.51 2.43
3400 3680 3.662759 ACTGAGGTGAAAAAGAACCCA 57.337 42.857 0.00 0.00 37.13 4.51
3461 3742 8.746922 TTTATCAACAGAATGACAAAATGAGC 57.253 30.769 0.00 0.00 39.69 4.26
3512 3794 3.831715 AAGCGCTTGTATCCTTTTCAC 57.168 42.857 24.40 0.00 0.00 3.18
3574 3874 2.613595 CTGAGTTTTAGTGTGTGCTGCA 59.386 45.455 0.00 0.00 0.00 4.41
3592 3892 9.791820 CAAGAAAACAATATATGCATGTTCTGA 57.208 29.630 10.16 0.00 36.33 3.27
3681 3988 1.134699 TGTCAAGGCCTCGCATAAGAG 60.135 52.381 5.23 0.00 37.97 2.85
3683 3990 1.869767 GATGTCAAGGCCTCGCATAAG 59.130 52.381 5.23 0.00 0.00 1.73
3684 3991 1.486310 AGATGTCAAGGCCTCGCATAA 59.514 47.619 5.23 0.00 0.00 1.90
3685 3992 1.123077 AGATGTCAAGGCCTCGCATA 58.877 50.000 5.23 0.00 0.00 3.14
3686 3993 1.123077 TAGATGTCAAGGCCTCGCAT 58.877 50.000 5.23 11.19 0.00 4.73
3751 4086 8.863049 CCATGTAATATTTTTCTTGCAGTTGTC 58.137 33.333 0.00 0.00 0.00 3.18
3757 4100 6.070881 AGGCACCATGTAATATTTTTCTTGCA 60.071 34.615 0.00 0.00 0.00 4.08
3804 4149 4.813161 CAGATTATATGGATGATGGTCCGC 59.187 45.833 0.00 0.00 41.35 5.54
3811 4157 9.289049 AGGGTGTATTCAGATTATATGGATGAT 57.711 33.333 0.00 0.00 0.00 2.45
3822 4168 5.216622 TGGTAGCTAGGGTGTATTCAGATT 58.783 41.667 0.00 0.00 0.00 2.40
3823 4169 4.816126 TGGTAGCTAGGGTGTATTCAGAT 58.184 43.478 0.00 0.00 0.00 2.90
3825 4171 4.835615 AGATGGTAGCTAGGGTGTATTCAG 59.164 45.833 0.00 0.00 0.00 3.02
3913 4264 7.849322 TGTACATGTTATATCCAAGCTAGGA 57.151 36.000 2.30 0.00 43.01 2.94
3914 4265 8.367911 TCTTGTACATGTTATATCCAAGCTAGG 58.632 37.037 2.30 0.00 0.00 3.02
3916 4267 9.929180 GATCTTGTACATGTTATATCCAAGCTA 57.071 33.333 2.30 0.00 0.00 3.32
3917 4268 8.432013 TGATCTTGTACATGTTATATCCAAGCT 58.568 33.333 2.30 0.00 0.00 3.74
3918 4269 8.607441 TGATCTTGTACATGTTATATCCAAGC 57.393 34.615 2.30 0.00 0.00 4.01
3939 4290 9.840427 TCTTTAAAAGGACGAAAATTCATGATC 57.160 29.630 0.00 0.00 0.00 2.92
3944 4709 7.763356 TGTGTCTTTAAAAGGACGAAAATTCA 58.237 30.769 0.00 0.00 35.45 2.57
3980 4748 6.418819 GCATTGCTTAGTTTTGGCTATATGTG 59.581 38.462 0.16 0.00 0.00 3.21
4072 4861 6.057533 AGATATGGATGAGAATTTCGCAACA 58.942 36.000 6.92 9.49 28.16 3.33
4189 4978 1.616159 AACCTGCCATAACAAAGCGT 58.384 45.000 0.00 0.00 0.00 5.07
4204 4993 2.031870 GCAGAAGAACCCAACAAACCT 58.968 47.619 0.00 0.00 0.00 3.50
4261 5052 6.347725 GCGTATTTGAGAGGTGGCATAATAAG 60.348 42.308 0.00 0.00 0.00 1.73
4319 5133 1.167851 TTTTCTCTGCAAGCATCCCG 58.832 50.000 0.00 0.00 0.00 5.14
4320 5134 3.881937 AATTTTCTCTGCAAGCATCCC 57.118 42.857 0.00 0.00 0.00 3.85
4321 5135 5.346522 CCTAAATTTTCTCTGCAAGCATCC 58.653 41.667 0.00 0.00 0.00 3.51
4336 5150 6.472887 TCATGTTTCTCGTCTCCCTAAATTT 58.527 36.000 0.00 0.00 0.00 1.82
4485 5548 0.319641 GGTCGCAAGTTCGGTTCTCT 60.320 55.000 0.00 0.00 39.48 3.10
4486 5549 0.319641 AGGTCGCAAGTTCGGTTCTC 60.320 55.000 0.00 0.00 39.48 2.87
4487 5550 0.319641 GAGGTCGCAAGTTCGGTTCT 60.320 55.000 0.00 0.00 39.48 3.01
4488 5551 0.319641 AGAGGTCGCAAGTTCGGTTC 60.320 55.000 0.00 0.00 39.48 3.62
4489 5552 0.319641 GAGAGGTCGCAAGTTCGGTT 60.320 55.000 0.00 0.00 39.48 4.44
4490 5553 1.289380 GAGAGGTCGCAAGTTCGGT 59.711 57.895 0.00 0.00 39.48 4.69
4491 5554 1.446272 GGAGAGGTCGCAAGTTCGG 60.446 63.158 0.00 0.00 39.48 4.30
4492 5555 1.009389 GTGGAGAGGTCGCAAGTTCG 61.009 60.000 0.00 0.00 39.48 3.95
4493 5556 0.670854 GGTGGAGAGGTCGCAAGTTC 60.671 60.000 0.00 0.00 39.48 3.01
4494 5557 1.371558 GGTGGAGAGGTCGCAAGTT 59.628 57.895 0.00 0.00 39.48 2.66
4495 5558 1.821061 CTGGTGGAGAGGTCGCAAGT 61.821 60.000 0.00 0.00 39.48 3.16
4496 5559 1.079543 CTGGTGGAGAGGTCGCAAG 60.080 63.158 0.00 0.00 0.00 4.01
4497 5560 3.059982 CTGGTGGAGAGGTCGCAA 58.940 61.111 0.00 0.00 0.00 4.85
4498 5561 3.695606 GCTGGTGGAGAGGTCGCA 61.696 66.667 0.00 0.00 0.00 5.10
4499 5562 4.803426 CGCTGGTGGAGAGGTCGC 62.803 72.222 0.00 0.00 0.00 5.19
4500 5563 4.135153 CCGCTGGTGGAGAGGTCG 62.135 72.222 0.00 0.00 36.89 4.79
4501 5564 3.775654 CCCGCTGGTGGAGAGGTC 61.776 72.222 1.28 0.00 40.00 3.85
4509 5572 3.612247 CTCAACCTCCCCGCTGGTG 62.612 68.421 0.00 0.00 36.57 4.17
4510 5573 3.322466 CTCAACCTCCCCGCTGGT 61.322 66.667 0.00 0.00 38.35 4.00
4511 5574 4.101448 CCTCAACCTCCCCGCTGG 62.101 72.222 0.00 0.00 0.00 4.85
4512 5575 4.101448 CCCTCAACCTCCCCGCTG 62.101 72.222 0.00 0.00 0.00 5.18
4513 5576 3.864983 TTCCCTCAACCTCCCCGCT 62.865 63.158 0.00 0.00 0.00 5.52
4514 5577 2.680370 ATTCCCTCAACCTCCCCGC 61.680 63.158 0.00 0.00 0.00 6.13
4515 5578 1.224592 CATTCCCTCAACCTCCCCG 59.775 63.158 0.00 0.00 0.00 5.73
4516 5579 0.704664 AACATTCCCTCAACCTCCCC 59.295 55.000 0.00 0.00 0.00 4.81
4517 5580 3.953542 ATAACATTCCCTCAACCTCCC 57.046 47.619 0.00 0.00 0.00 4.30
4518 5581 4.165372 TGGTATAACATTCCCTCAACCTCC 59.835 45.833 0.00 0.00 0.00 4.30
4519 5582 5.104485 AGTGGTATAACATTCCCTCAACCTC 60.104 44.000 0.00 0.00 0.00 3.85
4520 5583 4.788617 AGTGGTATAACATTCCCTCAACCT 59.211 41.667 0.00 0.00 0.00 3.50
4521 5584 5.112129 AGTGGTATAACATTCCCTCAACC 57.888 43.478 0.00 0.00 0.00 3.77
4522 5585 6.289064 CCTAGTGGTATAACATTCCCTCAAC 58.711 44.000 0.00 0.00 0.00 3.18
4523 5586 5.163237 GCCTAGTGGTATAACATTCCCTCAA 60.163 44.000 0.00 0.00 35.27 3.02
4524 5587 4.347000 GCCTAGTGGTATAACATTCCCTCA 59.653 45.833 0.00 0.00 35.27 3.86
4525 5588 4.593634 AGCCTAGTGGTATAACATTCCCTC 59.406 45.833 0.00 0.00 35.27 4.30
4526 5589 4.567857 AGCCTAGTGGTATAACATTCCCT 58.432 43.478 0.00 0.00 35.27 4.20
4527 5590 4.976540 AGCCTAGTGGTATAACATTCCC 57.023 45.455 0.00 0.00 35.27 3.97
4528 5591 5.778750 TCCTAGCCTAGTGGTATAACATTCC 59.221 44.000 0.00 0.00 35.27 3.01
4529 5592 6.071278 CCTCCTAGCCTAGTGGTATAACATTC 60.071 46.154 0.00 0.00 35.27 2.67
4530 5593 5.780793 CCTCCTAGCCTAGTGGTATAACATT 59.219 44.000 0.00 0.00 35.27 2.71
4531 5594 5.162859 ACCTCCTAGCCTAGTGGTATAACAT 60.163 44.000 10.71 0.00 31.79 2.71
4532 5595 4.169461 ACCTCCTAGCCTAGTGGTATAACA 59.831 45.833 10.71 0.00 31.79 2.41
4533 5596 4.738685 ACCTCCTAGCCTAGTGGTATAAC 58.261 47.826 10.71 0.00 31.79 1.89
4534 5597 4.417854 TGACCTCCTAGCCTAGTGGTATAA 59.582 45.833 11.95 1.99 33.07 0.98
4535 5598 3.985452 TGACCTCCTAGCCTAGTGGTATA 59.015 47.826 11.95 4.47 33.07 1.47
4536 5599 2.789992 TGACCTCCTAGCCTAGTGGTAT 59.210 50.000 11.95 0.00 33.07 2.73
4537 5600 2.211532 TGACCTCCTAGCCTAGTGGTA 58.788 52.381 11.95 2.00 33.07 3.25
4538 5601 1.008403 TGACCTCCTAGCCTAGTGGT 58.992 55.000 11.84 11.84 34.76 4.16
4539 5602 2.390225 ATGACCTCCTAGCCTAGTGG 57.610 55.000 0.00 2.57 0.00 4.00
4540 5603 4.446371 CAAAATGACCTCCTAGCCTAGTG 58.554 47.826 0.00 0.00 0.00 2.74
4541 5604 3.456277 CCAAAATGACCTCCTAGCCTAGT 59.544 47.826 0.00 0.00 0.00 2.57
4542 5605 3.456277 ACCAAAATGACCTCCTAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
4543 5606 3.460825 ACCAAAATGACCTCCTAGCCTA 58.539 45.455 0.00 0.00 0.00 3.93
4544 5607 2.279173 ACCAAAATGACCTCCTAGCCT 58.721 47.619 0.00 0.00 0.00 4.58
4545 5608 2.808906 ACCAAAATGACCTCCTAGCC 57.191 50.000 0.00 0.00 0.00 3.93
4546 5609 5.710567 AGTTTAACCAAAATGACCTCCTAGC 59.289 40.000 0.00 0.00 0.00 3.42
4547 5610 6.715264 ACAGTTTAACCAAAATGACCTCCTAG 59.285 38.462 4.75 0.00 41.17 3.02
4548 5611 6.488683 CACAGTTTAACCAAAATGACCTCCTA 59.511 38.462 4.75 0.00 41.17 2.94
4549 5612 5.301805 CACAGTTTAACCAAAATGACCTCCT 59.698 40.000 4.75 0.00 41.17 3.69
4550 5613 5.508994 CCACAGTTTAACCAAAATGACCTCC 60.509 44.000 4.75 0.00 41.17 4.30
4551 5614 5.068591 ACCACAGTTTAACCAAAATGACCTC 59.931 40.000 4.75 0.00 41.17 3.85
4552 5615 4.959839 ACCACAGTTTAACCAAAATGACCT 59.040 37.500 4.75 0.00 41.17 3.85
4553 5616 5.270893 ACCACAGTTTAACCAAAATGACC 57.729 39.130 4.75 0.00 41.17 4.02
4554 5617 6.334202 TGAACCACAGTTTAACCAAAATGAC 58.666 36.000 4.75 0.00 41.17 3.06
4555 5618 6.531503 TGAACCACAGTTTAACCAAAATGA 57.468 33.333 4.75 0.00 41.17 2.57
4556 5619 6.591834 TGTTGAACCACAGTTTAACCAAAATG 59.408 34.615 10.04 0.00 46.54 2.32
4557 5620 6.702329 TGTTGAACCACAGTTTAACCAAAAT 58.298 32.000 10.04 0.00 46.54 1.82
4558 5621 6.097915 TGTTGAACCACAGTTTAACCAAAA 57.902 33.333 10.04 0.00 46.54 2.44
4559 5622 5.723672 TGTTGAACCACAGTTTAACCAAA 57.276 34.783 10.04 0.00 46.54 3.28
4560 5623 5.186021 ACATGTTGAACCACAGTTTAACCAA 59.814 36.000 10.04 0.00 46.54 3.67
4561 5624 4.707448 ACATGTTGAACCACAGTTTAACCA 59.293 37.500 10.04 1.60 46.54 3.67
4562 5625 5.257082 ACATGTTGAACCACAGTTTAACC 57.743 39.130 10.04 0.00 46.54 2.85
4612 5675 9.534565 TGGACGAAATGTAAATCAATTTTTGAA 57.465 25.926 0.00 0.00 43.95 2.69
4613 5676 9.534565 TTGGACGAAATGTAAATCAATTTTTGA 57.465 25.926 0.00 0.00 45.01 2.69
4617 5680 9.541143 ACTTTTGGACGAAATGTAAATCAATTT 57.459 25.926 0.00 0.00 31.78 1.82
4618 5681 9.541143 AACTTTTGGACGAAATGTAAATCAATT 57.459 25.926 0.00 0.00 32.91 2.32
4619 5682 8.977505 CAACTTTTGGACGAAATGTAAATCAAT 58.022 29.630 0.00 0.00 32.91 2.57
4620 5683 7.976734 ACAACTTTTGGACGAAATGTAAATCAA 59.023 29.630 0.00 0.00 32.91 2.57
4621 5684 7.484975 ACAACTTTTGGACGAAATGTAAATCA 58.515 30.769 0.00 0.00 32.91 2.57
4622 5685 7.924103 ACAACTTTTGGACGAAATGTAAATC 57.076 32.000 0.00 0.00 32.91 2.17
4623 5686 7.436970 GGAACAACTTTTGGACGAAATGTAAAT 59.563 33.333 0.00 0.00 32.91 1.40
4624 5687 6.752815 GGAACAACTTTTGGACGAAATGTAAA 59.247 34.615 0.00 0.00 32.91 2.01
4625 5688 6.267070 GGAACAACTTTTGGACGAAATGTAA 58.733 36.000 0.00 0.00 32.91 2.41
4626 5689 5.504337 CGGAACAACTTTTGGACGAAATGTA 60.504 40.000 0.00 0.00 32.91 2.29
4627 5690 4.678622 GGAACAACTTTTGGACGAAATGT 58.321 39.130 0.00 0.00 34.27 2.71
4628 5691 3.728718 CGGAACAACTTTTGGACGAAATG 59.271 43.478 0.00 0.00 34.12 2.32
4629 5692 3.379057 ACGGAACAACTTTTGGACGAAAT 59.621 39.130 0.00 0.00 34.12 2.17
4630 5693 2.748532 ACGGAACAACTTTTGGACGAAA 59.251 40.909 0.00 0.00 34.12 3.46
4631 5694 2.358015 ACGGAACAACTTTTGGACGAA 58.642 42.857 0.00 0.00 34.12 3.85
4632 5695 2.027003 ACGGAACAACTTTTGGACGA 57.973 45.000 0.00 0.00 34.12 4.20
4633 5696 4.477302 AATACGGAACAACTTTTGGACG 57.523 40.909 0.00 0.00 34.12 4.79
4634 5697 6.928820 CAAAAATACGGAACAACTTTTGGAC 58.071 36.000 0.00 0.00 32.65 4.02
4636 5699 6.280537 CCAAAAATACGGAACAACTTTTGG 57.719 37.500 9.10 9.10 43.56 3.28
4637 5700 6.895607 ACCAAAAATACGGAACAACTTTTG 57.104 33.333 0.00 0.00 34.87 2.44
4638 5701 7.492020 GGTAACCAAAAATACGGAACAACTTTT 59.508 33.333 0.00 0.00 0.00 2.27
4639 5702 6.979817 GGTAACCAAAAATACGGAACAACTTT 59.020 34.615 0.00 0.00 0.00 2.66
4640 5703 6.506147 GGTAACCAAAAATACGGAACAACTT 58.494 36.000 0.00 0.00 0.00 2.66
4641 5704 5.277925 CGGTAACCAAAAATACGGAACAACT 60.278 40.000 0.00 0.00 0.00 3.16
4642 5705 4.911033 CGGTAACCAAAAATACGGAACAAC 59.089 41.667 0.00 0.00 0.00 3.32
4643 5706 4.578105 ACGGTAACCAAAAATACGGAACAA 59.422 37.500 0.00 0.00 0.00 2.83
4644 5707 4.024218 CACGGTAACCAAAAATACGGAACA 60.024 41.667 0.00 0.00 0.00 3.18
4645 5708 4.465921 CACGGTAACCAAAAATACGGAAC 58.534 43.478 0.00 0.00 0.00 3.62
4646 5709 3.501445 CCACGGTAACCAAAAATACGGAA 59.499 43.478 0.00 0.00 0.00 4.30
4647 5710 3.072944 CCACGGTAACCAAAAATACGGA 58.927 45.455 0.00 0.00 0.00 4.69
4648 5711 2.813172 ACCACGGTAACCAAAAATACGG 59.187 45.455 0.00 0.00 0.00 4.02
4649 5712 5.604010 TTACCACGGTAACCAAAAATACG 57.396 39.130 4.51 0.00 35.88 3.06
4660 5723 4.799564 AAATACTCGGTTACCACGGTAA 57.200 40.909 4.51 4.51 38.14 2.85
4661 5724 4.493547 CAAAATACTCGGTTACCACGGTA 58.506 43.478 1.13 1.60 0.00 4.02
4662 5725 3.328505 CAAAATACTCGGTTACCACGGT 58.671 45.455 1.13 0.00 0.00 4.83
4663 5726 2.674357 CCAAAATACTCGGTTACCACGG 59.326 50.000 1.13 0.00 0.00 4.94
4664 5727 3.123959 CACCAAAATACTCGGTTACCACG 59.876 47.826 1.13 0.00 0.00 4.94
4665 5728 3.120095 GCACCAAAATACTCGGTTACCAC 60.120 47.826 1.13 0.00 0.00 4.16
4666 5729 3.075884 GCACCAAAATACTCGGTTACCA 58.924 45.455 1.13 0.00 0.00 3.25
4667 5730 2.421073 GGCACCAAAATACTCGGTTACC 59.579 50.000 0.00 0.00 0.00 2.85
4668 5731 3.752412 GGCACCAAAATACTCGGTTAC 57.248 47.619 0.00 0.00 0.00 2.50
4697 5760 8.321353 GGTTTTGGATTCCTAAGGATGATTTTT 58.679 33.333 3.95 0.00 0.00 1.94
4698 5761 7.679881 AGGTTTTGGATTCCTAAGGATGATTTT 59.320 33.333 3.95 0.00 0.00 1.82
4699 5762 7.191918 AGGTTTTGGATTCCTAAGGATGATTT 58.808 34.615 3.95 0.00 0.00 2.17
4700 5763 6.745857 AGGTTTTGGATTCCTAAGGATGATT 58.254 36.000 3.95 0.00 0.00 2.57
4701 5764 6.347061 AGGTTTTGGATTCCTAAGGATGAT 57.653 37.500 3.95 0.00 0.00 2.45
4702 5765 5.796502 AGGTTTTGGATTCCTAAGGATGA 57.203 39.130 3.95 0.00 0.00 2.92
4703 5766 6.212888 CAAGGTTTTGGATTCCTAAGGATG 57.787 41.667 3.95 0.00 0.00 3.51
4717 5780 7.360361 GTGTTTGTAGATAGACCAAGGTTTTG 58.640 38.462 0.00 0.00 0.00 2.44
4718 5781 6.489022 GGTGTTTGTAGATAGACCAAGGTTTT 59.511 38.462 0.00 0.00 0.00 2.43
4719 5782 6.002082 GGTGTTTGTAGATAGACCAAGGTTT 58.998 40.000 0.00 0.00 0.00 3.27
4720 5783 5.072600 TGGTGTTTGTAGATAGACCAAGGTT 59.927 40.000 0.00 0.00 30.54 3.50
4721 5784 4.595781 TGGTGTTTGTAGATAGACCAAGGT 59.404 41.667 0.00 0.00 30.54 3.50
4722 5785 5.160607 TGGTGTTTGTAGATAGACCAAGG 57.839 43.478 0.00 0.00 30.54 3.61
4723 5786 8.041323 AGTAATGGTGTTTGTAGATAGACCAAG 58.959 37.037 3.65 0.00 37.05 3.61
4724 5787 7.913789 AGTAATGGTGTTTGTAGATAGACCAA 58.086 34.615 3.65 0.00 37.05 3.67
4725 5788 7.490657 AGTAATGGTGTTTGTAGATAGACCA 57.509 36.000 2.09 2.09 37.85 4.02
4726 5789 9.880157 TTAAGTAATGGTGTTTGTAGATAGACC 57.120 33.333 0.00 0.00 0.00 3.85
4746 5809 7.578310 ATCGTGTAGGCAGACTAATTAAGTA 57.422 36.000 0.00 0.00 39.07 2.24
4748 5811 6.583050 GCTATCGTGTAGGCAGACTAATTAAG 59.417 42.308 0.00 0.00 32.37 1.85
4790 5853 4.080526 ACCCATACCATCCTTACTGTTCAC 60.081 45.833 0.00 0.00 0.00 3.18
5165 6288 6.502652 CGTTATCATCACTTCATCAGTCTCT 58.497 40.000 0.00 0.00 30.92 3.10
5166 6289 5.174761 GCGTTATCATCACTTCATCAGTCTC 59.825 44.000 0.00 0.00 30.92 3.36
5167 6290 5.046529 GCGTTATCATCACTTCATCAGTCT 58.953 41.667 0.00 0.00 30.92 3.24
5256 6438 3.441572 AGCATTGTTACTTGGTCATCTGC 59.558 43.478 0.00 0.00 0.00 4.26
5273 6455 0.698238 TTGCCTCCCACACTAGCATT 59.302 50.000 0.00 0.00 32.67 3.56
5398 6580 0.109132 CATCCCCGAAAGCAACAAGC 60.109 55.000 0.00 0.00 46.19 4.01
5421 6606 4.378459 GCCGTGAGAAATCTGGTGTTAAAG 60.378 45.833 0.00 0.00 0.00 1.85
5441 6626 1.655329 GGTAGAGACGATCCTGCCG 59.345 63.158 0.00 0.00 0.00 5.69
5482 6677 1.257750 CCTCCGTGACCATGTCCTCA 61.258 60.000 0.00 0.00 0.00 3.86
5599 6794 4.619227 CCGGCGAGTGTGGTGGTT 62.619 66.667 9.30 0.00 0.00 3.67
5661 6857 2.868583 CCTTCCGTTATGATGAGCAGTG 59.131 50.000 0.00 0.00 0.00 3.66
5958 7196 2.286523 CCTCCTTGAGCGTCCAGGT 61.287 63.158 5.47 0.00 0.00 4.00
6047 7285 3.670629 CTGCCTCCCTCTCCTCGGT 62.671 68.421 0.00 0.00 0.00 4.69
6074 7312 1.400142 TCAAACAAGCACACCAGAACG 59.600 47.619 0.00 0.00 0.00 3.95
6083 7321 2.017049 ACTCCACTGTCAAACAAGCAC 58.983 47.619 0.00 0.00 0.00 4.40
6113 7351 9.630098 CATTAAAACATGCACCCATATTATCTC 57.370 33.333 0.00 0.00 0.00 2.75
6196 7434 0.178964 CCTCAACCCCAAAAGCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
6212 7450 3.250280 GTCTTCTTTTTGGTTCCGACCTC 59.750 47.826 0.00 0.00 46.66 3.85
6290 7528 6.348050 GCAATAATTTGATGTTCCCGCAAAAA 60.348 34.615 0.00 0.00 35.44 1.94
6291 7529 5.121454 GCAATAATTTGATGTTCCCGCAAAA 59.879 36.000 0.00 0.00 35.44 2.44
6292 7530 4.629200 GCAATAATTTGATGTTCCCGCAAA 59.371 37.500 0.00 0.00 34.60 3.68
6293 7531 4.180057 GCAATAATTTGATGTTCCCGCAA 58.820 39.130 0.00 0.00 34.60 4.85
6294 7532 3.194329 TGCAATAATTTGATGTTCCCGCA 59.806 39.130 0.00 0.00 34.60 5.69
6295 7533 3.779759 TGCAATAATTTGATGTTCCCGC 58.220 40.909 0.00 0.00 34.60 6.13
6296 7534 5.247507 TCTGCAATAATTTGATGTTCCCG 57.752 39.130 0.00 0.00 34.60 5.14
6297 7535 5.045872 GCTCTGCAATAATTTGATGTTCCC 58.954 41.667 0.00 0.00 34.60 3.97
6298 7536 5.653507 TGCTCTGCAATAATTTGATGTTCC 58.346 37.500 0.00 0.00 34.76 3.62
6641 8004 0.820891 AGAAGTGCTTGTGGCCTGTG 60.821 55.000 3.32 0.00 40.92 3.66
6651 8015 2.457366 AACGATTCGGAGAAGTGCTT 57.543 45.000 11.29 0.00 45.90 3.91
6675 8042 3.056891 AGAAGAAGTGCGAGAGAAGGAAG 60.057 47.826 0.00 0.00 0.00 3.46
6706 8073 2.281900 TTGCAACTACCCCCACGC 60.282 61.111 0.00 0.00 0.00 5.34
6759 8133 1.152368 GCTAAGGGGGCATCATGCT 59.848 57.895 10.11 0.00 44.28 3.79
6775 8149 1.303643 GTGGCTTGCCCTAACAGCT 60.304 57.895 9.35 0.00 0.00 4.24
6821 8195 2.344203 CCCTCGTGGCGACTTCTCT 61.344 63.158 0.00 0.00 0.00 3.10
6883 8257 0.242825 GGATGGTCGTGACTCGTGAA 59.757 55.000 0.00 0.00 40.80 3.18
6900 8274 0.390492 CAGCTATCAGACGCCATGGA 59.610 55.000 18.40 0.00 0.00 3.41
7018 8392 8.958119 TTCATATAAATCGGTTGTAGCTCTTT 57.042 30.769 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.