Multiple sequence alignment - TraesCS2D01G426800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G426800 chr2D 100.000 4274 0 0 1 4274 539170412 539166139 0.000000e+00 7893.0
1 TraesCS2D01G426800 chr2D 86.997 646 84 0 2437 3082 539016446 539015801 0.000000e+00 728.0
2 TraesCS2D01G426800 chr2D 78.556 942 160 36 2132 3049 539226129 539225206 2.210000e-162 582.0
3 TraesCS2D01G426800 chr2D 85.885 418 37 16 3803 4209 485088215 485087809 3.950000e-115 425.0
4 TraesCS2D01G426800 chr2D 95.000 240 6 4 1850 2085 481969334 481969097 5.220000e-99 372.0
5 TraesCS2D01G426800 chr2D 92.887 239 12 3 1851 2085 590339762 590339999 4.090000e-90 342.0
6 TraesCS2D01G426800 chr2D 85.358 321 41 5 2101 2421 539016937 539016623 1.150000e-85 327.0
7 TraesCS2D01G426800 chr2D 81.622 370 63 5 1130 1497 539019467 539019101 6.950000e-78 302.0
8 TraesCS2D01G426800 chr2D 87.773 229 24 3 3507 3734 488992397 488992172 9.110000e-67 265.0
9 TraesCS2D01G426800 chr2D 84.848 264 34 6 607 868 36200208 36199949 1.180000e-65 261.0
10 TraesCS2D01G426800 chr2D 94.675 169 7 2 260 428 87407359 87407525 1.180000e-65 261.0
11 TraesCS2D01G426800 chr2D 76.011 371 50 20 1137 1474 539227068 539226704 5.720000e-34 156.0
12 TraesCS2D01G426800 chr2D 84.783 92 11 3 3891 3979 568314769 568314678 5.890000e-14 89.8
13 TraesCS2D01G426800 chr2A 94.516 1094 43 6 2088 3179 682481626 682480548 0.000000e+00 1672.0
14 TraesCS2D01G426800 chr2A 89.970 1007 54 17 871 1847 682482620 682481631 0.000000e+00 1256.0
15 TraesCS2D01G426800 chr2A 85.253 990 131 7 2101 3082 682154055 682153073 0.000000e+00 1005.0
16 TraesCS2D01G426800 chr2A 79.237 944 150 39 2132 3049 682492317 682491394 2.180000e-172 616.0
17 TraesCS2D01G426800 chr2A 84.365 614 81 8 2101 2705 681997459 681996852 4.760000e-164 588.0
18 TraesCS2D01G426800 chr2A 93.103 319 14 4 3188 3500 682480188 682479872 1.080000e-125 460.0
19 TraesCS2D01G426800 chr2A 78.533 368 46 16 1137 1474 682493388 682493024 1.200000e-50 211.0
20 TraesCS2D01G426800 chr2A 91.892 148 8 3 461 608 682482762 682482619 2.010000e-48 204.0
21 TraesCS2D01G426800 chr2B 92.542 1180 60 10 2089 3263 642978588 642977432 0.000000e+00 1666.0
22 TraesCS2D01G426800 chr2B 90.646 727 47 10 871 1591 642979759 642979048 0.000000e+00 946.0
23 TraesCS2D01G426800 chr2B 84.312 937 125 15 2099 3035 642782985 642782071 0.000000e+00 896.0
24 TraesCS2D01G426800 chr2B 79.025 944 146 42 2132 3046 643091936 643091016 2.200000e-167 599.0
25 TraesCS2D01G426800 chr2B 84.902 510 46 20 3508 4014 489548514 489548033 1.790000e-133 486.0
26 TraesCS2D01G426800 chr2B 87.402 254 8 4 3260 3505 642977350 642977113 1.960000e-68 270.0
27 TraesCS2D01G426800 chr2B 86.066 244 26 2 1 237 642980360 642980118 5.480000e-64 255.0
28 TraesCS2D01G426800 chr2B 94.304 158 5 2 461 618 642980026 642979873 5.520000e-59 239.0
29 TraesCS2D01G426800 chr2B 78.533 368 49 14 1134 1474 643092981 643092617 9.310000e-52 215.0
30 TraesCS2D01G426800 chr2B 91.339 127 10 1 1636 1762 642978950 642978825 5.680000e-39 172.0
31 TraesCS2D01G426800 chrUn 95.327 535 20 5 3506 4037 94523302 94523834 0.000000e+00 845.0
32 TraesCS2D01G426800 chrUn 93.966 232 11 3 1847 2076 91571310 91571080 8.800000e-92 348.0
33 TraesCS2D01G426800 chrUn 92.571 175 12 1 4035 4208 94534396 94534570 2.550000e-62 250.0
34 TraesCS2D01G426800 chr5A 92.683 328 11 4 3673 4000 43221142 43220828 1.080000e-125 460.0
35 TraesCS2D01G426800 chr5A 88.141 312 22 8 3504 3806 556735423 556735728 1.460000e-94 357.0
36 TraesCS2D01G426800 chr5A 92.917 240 11 4 1851 2085 489845332 489845570 1.140000e-90 344.0
37 TraesCS2D01G426800 chr5A 85.130 269 39 1 601 868 115095118 115095386 1.510000e-69 274.0
38 TraesCS2D01G426800 chr5A 84.848 264 37 3 606 868 571792143 571792404 3.280000e-66 263.0
39 TraesCS2D01G426800 chr3A 85.948 427 46 12 3795 4211 13084062 13083640 1.090000e-120 444.0
40 TraesCS2D01G426800 chr3A 87.952 249 26 3 3504 3748 13084575 13084327 1.500000e-74 291.0
41 TraesCS2D01G426800 chr3A 86.694 248 28 5 623 868 396620349 396620105 1.960000e-68 270.0
42 TraesCS2D01G426800 chr3D 88.217 314 23 4 3504 3809 415131782 415132089 3.140000e-96 363.0
43 TraesCS2D01G426800 chr6D 93.361 241 11 3 1849 2085 460582843 460582604 6.800000e-93 351.0
44 TraesCS2D01G426800 chr6D 96.933 163 4 1 266 428 423084161 423084322 5.450000e-69 272.0
45 TraesCS2D01G426800 chr4A 92.946 241 11 4 1849 2085 494069646 494069884 3.160000e-91 346.0
46 TraesCS2D01G426800 chr4A 85.667 300 35 5 3501 3795 467261851 467262147 4.150000e-80 309.0
47 TraesCS2D01G426800 chr4A 94.186 172 8 2 264 434 517406469 517406639 1.180000e-65 261.0
48 TraesCS2D01G426800 chr4A 87.013 231 25 5 3507 3736 731594710 731594936 5.480000e-64 255.0
49 TraesCS2D01G426800 chr4A 82.315 311 34 13 3902 4208 467262450 467262743 2.550000e-62 250.0
50 TraesCS2D01G426800 chr6B 92.917 240 12 3 1850 2085 505321909 505322147 1.140000e-90 344.0
51 TraesCS2D01G426800 chr6B 88.596 228 22 3 3507 3733 622017118 622016894 1.510000e-69 274.0
52 TraesCS2D01G426800 chr6B 88.210 229 23 3 3507 3734 621580056 621580281 1.960000e-68 270.0
53 TraesCS2D01G426800 chr6B 81.250 320 47 11 3890 4204 126289341 126289030 3.300000e-61 246.0
54 TraesCS2D01G426800 chr7B 92.887 239 12 4 1851 2085 610350956 610351193 4.090000e-90 342.0
55 TraesCS2D01G426800 chr7B 84.691 307 41 5 3901 4204 735129863 735130166 6.950000e-78 302.0
56 TraesCS2D01G426800 chr7B 84.685 222 26 7 3890 4107 745283659 745283442 9.310000e-52 215.0
57 TraesCS2D01G426800 chr7B 87.931 116 14 0 4031 4146 86006677 86006792 2.070000e-28 137.0
58 TraesCS2D01G426800 chr1D 92.562 242 13 4 1848 2085 375946454 375946214 4.090000e-90 342.0
59 TraesCS2D01G426800 chr1D 96.319 163 5 1 266 428 338937373 338937212 2.530000e-67 267.0
60 TraesCS2D01G426800 chr1D 87.446 231 24 4 3507 3736 1857140 1856914 1.180000e-65 261.0
61 TraesCS2D01G426800 chr1B 81.674 442 47 10 3799 4213 674380270 674379836 1.900000e-88 337.0
62 TraesCS2D01G426800 chr1B 85.266 319 35 8 3508 3815 674380632 674380315 6.900000e-83 318.0
63 TraesCS2D01G426800 chr1B 94.675 169 8 1 266 434 24349052 24349219 1.180000e-65 261.0
64 TraesCS2D01G426800 chr1B 86.809 235 26 4 3503 3736 568003281 568003511 1.520000e-64 257.0
65 TraesCS2D01G426800 chr1A 89.057 265 15 4 3538 3794 108688882 108688624 2.480000e-82 316.0
66 TraesCS2D01G426800 chr1A 83.681 288 37 5 3504 3786 179535257 179534975 3.280000e-66 263.0
67 TraesCS2D01G426800 chr1A 90.511 137 7 3 3679 3815 108688625 108688495 4.390000e-40 176.0
68 TraesCS2D01G426800 chr4D 84.848 297 38 4 3504 3795 205903718 205903424 4.180000e-75 292.0
69 TraesCS2D01G426800 chr4D 83.871 310 44 5 3901 4207 268081454 268081148 1.500000e-74 291.0
70 TraesCS2D01G426800 chr4D 87.352 253 29 3 607 858 8648507 8648757 1.940000e-73 287.0
71 TraesCS2D01G426800 chr4D 83.838 297 40 4 3504 3795 205941807 205941514 4.210000e-70 276.0
72 TraesCS2D01G426800 chr4D 95.238 168 7 1 264 431 102385216 102385050 9.110000e-67 265.0
73 TraesCS2D01G426800 chr3B 87.302 252 29 3 618 868 394098009 394097760 6.990000e-73 285.0
74 TraesCS2D01G426800 chr3B 86.312 263 32 4 607 868 457573981 457574240 2.520000e-72 283.0
75 TraesCS2D01G426800 chr3B 85.171 263 33 5 607 869 519860656 519860912 9.110000e-67 265.0
76 TraesCS2D01G426800 chr3B 92.737 179 10 3 251 429 66820012 66820187 5.480000e-64 255.0
77 TraesCS2D01G426800 chr7D 94.595 185 6 4 266 447 296507683 296507866 2.520000e-72 283.0
78 TraesCS2D01G426800 chr7D 94.118 170 8 2 261 429 14440295 14440463 1.520000e-64 257.0
79 TraesCS2D01G426800 chr5D 88.646 229 22 3 3507 3734 423353680 423353455 4.210000e-70 276.0
80 TraesCS2D01G426800 chr5B 85.075 268 40 0 601 868 121249495 121249762 1.510000e-69 274.0
81 TraesCS2D01G426800 chr6A 87.554 233 23 5 3504 3733 107608655 107608884 9.110000e-67 265.0
82 TraesCS2D01G426800 chr4B 88.034 117 13 1 4031 4146 528806767 528806651 2.070000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G426800 chr2D 539166139 539170412 4273 True 7893.000000 7893 100.000000 1 4274 1 chr2D.!!$R5 4273
1 TraesCS2D01G426800 chr2D 539015801 539019467 3666 True 452.333333 728 84.659000 1130 3082 3 chr2D.!!$R7 1952
2 TraesCS2D01G426800 chr2D 539225206 539227068 1862 True 369.000000 582 77.283500 1137 3049 2 chr2D.!!$R8 1912
3 TraesCS2D01G426800 chr2A 682153073 682154055 982 True 1005.000000 1005 85.253000 2101 3082 1 chr2A.!!$R2 981
4 TraesCS2D01G426800 chr2A 682479872 682482762 2890 True 898.000000 1672 92.370250 461 3500 4 chr2A.!!$R3 3039
5 TraesCS2D01G426800 chr2A 681996852 681997459 607 True 588.000000 588 84.365000 2101 2705 1 chr2A.!!$R1 604
6 TraesCS2D01G426800 chr2A 682491394 682493388 1994 True 413.500000 616 78.885000 1137 3049 2 chr2A.!!$R4 1912
7 TraesCS2D01G426800 chr2B 642782071 642782985 914 True 896.000000 896 84.312000 2099 3035 1 chr2B.!!$R2 936
8 TraesCS2D01G426800 chr2B 642977113 642980360 3247 True 591.333333 1666 90.383167 1 3505 6 chr2B.!!$R3 3504
9 TraesCS2D01G426800 chr2B 643091016 643092981 1965 True 407.000000 599 78.779000 1134 3046 2 chr2B.!!$R4 1912
10 TraesCS2D01G426800 chrUn 94523302 94523834 532 False 845.000000 845 95.327000 3506 4037 1 chrUn.!!$F1 531
11 TraesCS2D01G426800 chr3A 13083640 13084575 935 True 367.500000 444 86.950000 3504 4211 2 chr3A.!!$R2 707
12 TraesCS2D01G426800 chr4A 467261851 467262743 892 False 279.500000 309 83.991000 3501 4208 2 chr4A.!!$F4 707
13 TraesCS2D01G426800 chr1B 674379836 674380632 796 True 327.500000 337 83.470000 3508 4213 2 chr1B.!!$R1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 990 0.104120 TGTACAGTGCACGTGCTCTT 59.896 50.0 35.29 27.47 42.25 2.85 F
1009 1054 0.314578 CATCTCGTTTCGACGCATGC 60.315 55.0 7.91 7.91 0.00 4.06 F
1867 4136 0.457851 CCGGACAGAGATCAGGTGAC 59.542 60.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 4148 0.109781 CAAGGCACACGGTAACATGC 60.110 55.0 0.00 0.00 38.50 4.06 R
1894 4163 0.173255 ATTTGAATTCGGGCGCAAGG 59.827 50.0 10.83 0.00 38.28 3.61 R
3834 7172 0.393808 GGTTATTCTTCCAGCCGGCA 60.394 55.0 31.54 4.59 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.477484 AAGATGCTCTAATACACGGTAAATTAG 57.523 33.333 12.24 12.24 35.46 1.73
41 42 8.807667 AATACACGGTAAATTAGAATAGACCG 57.192 34.615 19.03 19.03 45.23 4.79
67 75 2.159043 CCACATGTGTACTCCCTAGCTG 60.159 54.545 23.79 0.49 0.00 4.24
75 83 0.984995 ACTCCCTAGCTGGTGTTTCC 59.015 55.000 0.00 0.00 0.00 3.13
82 90 4.102524 CCCTAGCTGGTGTTTCCACATATA 59.897 45.833 0.00 0.00 43.71 0.86
83 91 5.300752 CCTAGCTGGTGTTTCCACATATAG 58.699 45.833 0.00 0.00 43.71 1.31
85 93 4.770795 AGCTGGTGTTTCCACATATAGTC 58.229 43.478 0.00 0.00 43.71 2.59
95 103 5.900865 TCCACATATAGTCGTGTTGTGTA 57.099 39.130 0.00 0.00 36.75 2.90
96 104 5.643664 TCCACATATAGTCGTGTTGTGTAC 58.356 41.667 0.00 0.00 36.75 2.90
101 109 0.750850 AGTCGTGTTGTGTACAGCCT 59.249 50.000 0.00 0.00 37.45 4.58
105 113 1.804746 CGTGTTGTGTACAGCCTCACA 60.805 52.381 0.00 0.00 41.81 3.58
106 114 1.867233 GTGTTGTGTACAGCCTCACAG 59.133 52.381 0.00 0.00 43.75 3.66
107 115 1.760029 TGTTGTGTACAGCCTCACAGA 59.240 47.619 0.00 0.00 43.75 3.41
111 119 1.613925 GTGTACAGCCTCACAGACAGA 59.386 52.381 0.00 0.00 35.04 3.41
115 123 1.274728 ACAGCCTCACAGACAGATCAC 59.725 52.381 0.00 0.00 0.00 3.06
126 134 6.830838 TCACAGACAGATCACATAGAGTACAT 59.169 38.462 0.00 0.00 0.00 2.29
130 138 4.898265 ACAGATCACATAGAGTACATGGCT 59.102 41.667 0.00 0.00 0.00 4.75
134 142 8.093307 CAGATCACATAGAGTACATGGCTTTAT 58.907 37.037 0.00 0.00 0.00 1.40
151 159 9.965902 ATGGCTTTATGGTATCCTAAAGATAAG 57.034 33.333 13.22 0.00 39.21 1.73
204 212 9.515226 GGCCAATATAAACTAACATTATCCTCA 57.485 33.333 0.00 0.00 0.00 3.86
237 245 4.324267 ACCAACCGTCCTCAAAGAAATAG 58.676 43.478 0.00 0.00 0.00 1.73
238 246 4.041198 ACCAACCGTCCTCAAAGAAATAGA 59.959 41.667 0.00 0.00 0.00 1.98
240 248 5.472137 CCAACCGTCCTCAAAGAAATAGAAA 59.528 40.000 0.00 0.00 0.00 2.52
241 249 6.016610 CCAACCGTCCTCAAAGAAATAGAAAA 60.017 38.462 0.00 0.00 0.00 2.29
242 250 7.422399 CAACCGTCCTCAAAGAAATAGAAAAA 58.578 34.615 0.00 0.00 0.00 1.94
245 253 9.462606 ACCGTCCTCAAAGAAATAGAAAAATAT 57.537 29.630 0.00 0.00 0.00 1.28
269 277 7.317842 TCTAGCAAGTACTACATGTGTACTC 57.682 40.000 26.83 19.93 46.66 2.59
270 278 5.326200 AGCAAGTACTACATGTGTACTCC 57.674 43.478 26.83 22.29 46.66 3.85
271 279 4.159879 AGCAAGTACTACATGTGTACTCCC 59.840 45.833 26.83 22.08 46.66 4.30
273 281 5.679127 GCAAGTACTACATGTGTACTCCCTC 60.679 48.000 26.83 17.73 46.66 4.30
274 282 4.534797 AGTACTACATGTGTACTCCCTCC 58.465 47.826 23.78 7.85 44.93 4.30
275 283 2.376109 ACTACATGTGTACTCCCTCCG 58.624 52.381 9.11 0.00 0.00 4.63
276 284 2.291411 ACTACATGTGTACTCCCTCCGT 60.291 50.000 9.11 0.00 0.00 4.69
277 285 1.640917 ACATGTGTACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
278 286 1.549170 ACATGTGTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
279 287 1.134788 CATGTGTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
280 288 0.113776 TGTGTACTCCCTCCGTTCCT 59.886 55.000 0.00 0.00 0.00 3.36
281 289 1.355381 TGTGTACTCCCTCCGTTCCTA 59.645 52.381 0.00 0.00 0.00 2.94
282 290 2.225091 TGTGTACTCCCTCCGTTCCTAA 60.225 50.000 0.00 0.00 0.00 2.69
283 291 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
284 292 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
285 293 4.646492 GTGTACTCCCTCCGTTCCTAAATA 59.354 45.833 0.00 0.00 0.00 1.40
286 294 5.303845 GTGTACTCCCTCCGTTCCTAAATAT 59.696 44.000 0.00 0.00 0.00 1.28
287 295 6.491403 GTGTACTCCCTCCGTTCCTAAATATA 59.509 42.308 0.00 0.00 0.00 0.86
288 296 7.014615 GTGTACTCCCTCCGTTCCTAAATATAA 59.985 40.741 0.00 0.00 0.00 0.98
289 297 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
290 298 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
291 299 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
292 300 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
293 301 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
294 302 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
295 303 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
296 304 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
313 321 9.466497 AAGTCTTTTTAGAGATTGCATTATGGA 57.534 29.630 0.00 0.00 0.00 3.41
314 322 8.897752 AGTCTTTTTAGAGATTGCATTATGGAC 58.102 33.333 0.00 0.00 0.00 4.02
315 323 8.897752 GTCTTTTTAGAGATTGCATTATGGACT 58.102 33.333 0.00 0.00 0.00 3.85
318 326 9.679661 TTTTTAGAGATTGCATTATGGACTACA 57.320 29.630 0.00 0.00 0.00 2.74
319 327 9.851686 TTTTAGAGATTGCATTATGGACTACAT 57.148 29.630 0.00 0.00 43.68 2.29
321 329 9.929180 TTAGAGATTGCATTATGGACTACATAC 57.071 33.333 0.00 0.00 41.61 2.39
322 330 7.093354 AGAGATTGCATTATGGACTACATACG 58.907 38.462 0.00 0.00 41.61 3.06
323 331 6.166279 AGATTGCATTATGGACTACATACGG 58.834 40.000 0.00 0.00 41.61 4.02
324 332 5.538849 TTGCATTATGGACTACATACGGA 57.461 39.130 0.00 0.00 41.61 4.69
325 333 5.134202 TGCATTATGGACTACATACGGAG 57.866 43.478 0.00 0.00 41.61 4.63
326 334 3.927142 GCATTATGGACTACATACGGAGC 59.073 47.826 0.00 0.00 41.61 4.70
327 335 4.560716 GCATTATGGACTACATACGGAGCA 60.561 45.833 0.00 0.00 41.61 4.26
328 336 5.538118 CATTATGGACTACATACGGAGCAA 58.462 41.667 0.00 0.00 41.61 3.91
329 337 5.601583 TTATGGACTACATACGGAGCAAA 57.398 39.130 0.00 0.00 41.61 3.68
330 338 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
331 339 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
332 340 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
333 341 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
334 342 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
335 343 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
336 344 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
337 345 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
338 346 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
339 347 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
340 348 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
341 349 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
342 350 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
343 351 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
344 352 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
345 353 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
346 354 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
347 355 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
348 356 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
349 357 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
350 358 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
379 387 8.783833 ATGTCTATATACATCCGTACGTAGTT 57.216 34.615 15.21 0.00 37.47 2.24
380 388 8.607441 TGTCTATATACATCCGTACGTAGTTT 57.393 34.615 15.21 7.24 37.78 2.66
381 389 8.498358 TGTCTATATACATCCGTACGTAGTTTG 58.502 37.037 15.21 6.57 37.78 2.93
382 390 8.499162 GTCTATATACATCCGTACGTAGTTTGT 58.501 37.037 15.21 11.74 37.78 2.83
383 391 9.705290 TCTATATACATCCGTACGTAGTTTGTA 57.295 33.333 15.21 13.36 37.78 2.41
384 392 9.964253 CTATATACATCCGTACGTAGTTTGTAG 57.036 37.037 15.21 11.53 37.78 2.74
385 393 6.683974 ATACATCCGTACGTAGTTTGTAGT 57.316 37.500 15.21 3.94 37.78 2.73
386 394 4.726416 ACATCCGTACGTAGTTTGTAGTG 58.274 43.478 15.21 0.00 37.78 2.74
387 395 4.455533 ACATCCGTACGTAGTTTGTAGTGA 59.544 41.667 15.21 0.00 37.78 3.41
388 396 5.048782 ACATCCGTACGTAGTTTGTAGTGAA 60.049 40.000 15.21 0.00 37.78 3.18
389 397 5.431420 TCCGTACGTAGTTTGTAGTGAAA 57.569 39.130 15.21 0.00 37.78 2.69
390 398 6.012658 TCCGTACGTAGTTTGTAGTGAAAT 57.987 37.500 15.21 0.00 37.78 2.17
391 399 6.086222 TCCGTACGTAGTTTGTAGTGAAATC 58.914 40.000 15.21 0.00 37.78 2.17
392 400 6.072508 TCCGTACGTAGTTTGTAGTGAAATCT 60.073 38.462 15.21 0.00 37.78 2.40
393 401 6.250104 CCGTACGTAGTTTGTAGTGAAATCTC 59.750 42.308 15.21 0.00 37.78 2.75
394 402 7.020010 CGTACGTAGTTTGTAGTGAAATCTCT 58.980 38.462 7.22 0.00 37.78 3.10
395 403 8.171196 CGTACGTAGTTTGTAGTGAAATCTCTA 58.829 37.037 7.22 0.00 37.78 2.43
396 404 9.831737 GTACGTAGTTTGTAGTGAAATCTCTAA 57.168 33.333 0.00 0.00 37.78 2.10
398 406 9.754382 ACGTAGTTTGTAGTGAAATCTCTAAAA 57.246 29.630 0.00 0.00 37.78 1.52
423 431 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
424 432 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
425 433 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
426 434 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
427 435 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
428 436 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
429 437 6.854091 ATATTTAGGAACGGAGGGAGTATC 57.146 41.667 0.00 0.00 0.00 2.24
430 438 3.967467 TTAGGAACGGAGGGAGTATCT 57.033 47.619 0.00 0.00 33.73 1.98
431 439 2.850695 AGGAACGGAGGGAGTATCTT 57.149 50.000 0.00 0.00 33.73 2.40
432 440 3.117552 AGGAACGGAGGGAGTATCTTT 57.882 47.619 0.00 0.00 33.73 2.52
437 445 4.338379 ACGGAGGGAGTATCTTTTATGC 57.662 45.455 0.00 0.00 33.73 3.14
446 454 8.306761 AGGGAGTATCTTTTATGCAAACAAAAG 58.693 33.333 18.42 18.42 41.18 2.27
455 463 4.595762 ATGCAAACAAAAGCTCATCAGT 57.404 36.364 0.00 0.00 0.00 3.41
457 465 4.858935 TGCAAACAAAAGCTCATCAGTAC 58.141 39.130 0.00 0.00 0.00 2.73
458 466 4.580167 TGCAAACAAAAGCTCATCAGTACT 59.420 37.500 0.00 0.00 0.00 2.73
503 535 7.750229 AAGCAGTCATTTCTCATCTAAAACA 57.250 32.000 0.00 0.00 0.00 2.83
534 566 0.755327 GCCACCCAAACCACTGAACT 60.755 55.000 0.00 0.00 0.00 3.01
535 567 1.032014 CCACCCAAACCACTGAACTG 58.968 55.000 0.00 0.00 0.00 3.16
567 599 4.046462 CACCAAACTCACATTGCTGAAAG 58.954 43.478 0.00 0.00 0.00 2.62
618 653 7.133483 AGTAGTTAACTCATACTCCCTCCATT 58.867 38.462 12.39 0.00 30.33 3.16
619 654 6.893020 AGTTAACTCATACTCCCTCCATTT 57.107 37.500 1.12 0.00 0.00 2.32
620 655 6.890293 AGTTAACTCATACTCCCTCCATTTC 58.110 40.000 1.12 0.00 0.00 2.17
621 656 4.779993 AACTCATACTCCCTCCATTTCC 57.220 45.455 0.00 0.00 0.00 3.13
622 657 4.014273 ACTCATACTCCCTCCATTTCCT 57.986 45.455 0.00 0.00 0.00 3.36
626 661 6.043706 ACTCATACTCCCTCCATTTCCTAATG 59.956 42.308 0.00 0.00 40.70 1.90
627 662 5.911178 TCATACTCCCTCCATTTCCTAATGT 59.089 40.000 0.00 0.00 39.62 2.71
628 663 4.510167 ACTCCCTCCATTTCCTAATGTG 57.490 45.455 0.00 0.00 39.62 3.21
629 664 3.203040 ACTCCCTCCATTTCCTAATGTGG 59.797 47.826 0.00 0.00 39.62 4.17
630 665 3.197983 TCCCTCCATTTCCTAATGTGGT 58.802 45.455 0.00 0.00 39.62 4.16
631 666 3.053693 TCCCTCCATTTCCTAATGTGGTG 60.054 47.826 0.00 0.00 39.62 4.17
635 670 5.122707 TCCATTTCCTAATGTGGTGCATA 57.877 39.130 0.00 0.00 39.62 3.14
636 671 5.704354 TCCATTTCCTAATGTGGTGCATAT 58.296 37.500 0.00 0.00 39.62 1.78
638 673 7.469343 TCCATTTCCTAATGTGGTGCATATAT 58.531 34.615 0.00 0.00 39.62 0.86
642 677 9.979897 ATTTCCTAATGTGGTGCATATATATGT 57.020 29.630 21.10 4.46 36.67 2.29
643 678 9.806448 TTTCCTAATGTGGTGCATATATATGTT 57.194 29.630 21.10 10.10 36.67 2.71
645 680 9.806448 TCCTAATGTGGTGCATATATATGTTTT 57.194 29.630 21.10 9.17 36.67 2.43
709 744 9.508567 GGAGAAAAACATTTACATCTAGAATGC 57.491 33.333 0.00 0.00 34.86 3.56
710 745 9.508567 GAGAAAAACATTTACATCTAGAATGCC 57.491 33.333 0.00 0.00 34.86 4.40
711 746 9.023962 AGAAAAACATTTACATCTAGAATGCCA 57.976 29.630 0.00 0.00 34.86 4.92
712 747 9.638239 GAAAAACATTTACATCTAGAATGCCAA 57.362 29.630 0.00 0.00 34.86 4.52
713 748 9.995003 AAAAACATTTACATCTAGAATGCCAAA 57.005 25.926 0.00 1.74 34.86 3.28
714 749 8.986477 AAACATTTACATCTAGAATGCCAAAC 57.014 30.769 0.00 0.00 34.86 2.93
715 750 7.701539 ACATTTACATCTAGAATGCCAAACA 57.298 32.000 0.00 0.00 34.86 2.83
716 751 8.297470 ACATTTACATCTAGAATGCCAAACAT 57.703 30.769 0.00 0.00 42.30 2.71
717 752 9.407380 ACATTTACATCTAGAATGCCAAACATA 57.593 29.630 0.00 0.00 38.34 2.29
723 758 9.970553 ACATCTAGAATGCCAAACATATATCAT 57.029 29.630 0.00 0.00 38.34 2.45
823 858 9.868277 TTTCATCAAAGTTTGTAATGTTTGACT 57.132 25.926 15.08 0.00 40.67 3.41
824 859 9.868277 TTCATCAAAGTTTGTAATGTTTGACTT 57.132 25.926 15.08 0.00 40.67 3.01
825 860 9.515020 TCATCAAAGTTTGTAATGTTTGACTTC 57.485 29.630 15.08 0.00 40.67 3.01
826 861 9.520204 CATCAAAGTTTGTAATGTTTGACTTCT 57.480 29.630 15.08 0.00 40.67 2.85
827 862 9.736023 ATCAAAGTTTGTAATGTTTGACTTCTC 57.264 29.630 15.08 0.00 40.67 2.87
828 863 8.735315 TCAAAGTTTGTAATGTTTGACTTCTCA 58.265 29.630 15.08 0.00 34.72 3.27
829 864 9.352784 CAAAGTTTGTAATGTTTGACTTCTCAA 57.647 29.630 7.48 0.00 34.39 3.02
830 865 9.921637 AAAGTTTGTAATGTTTGACTTCTCAAA 57.078 25.926 0.00 0.00 42.93 2.69
831 866 9.921637 AAGTTTGTAATGTTTGACTTCTCAAAA 57.078 25.926 0.00 0.00 45.89 2.44
832 867 9.921637 AGTTTGTAATGTTTGACTTCTCAAAAA 57.078 25.926 0.00 0.00 45.89 1.94
866 901 4.263771 ACCAAATTATGAAACGGAGGGAGT 60.264 41.667 0.00 0.00 0.00 3.85
867 902 5.045432 ACCAAATTATGAAACGGAGGGAGTA 60.045 40.000 0.00 0.00 0.00 2.59
868 903 5.296035 CCAAATTATGAAACGGAGGGAGTAC 59.704 44.000 0.00 0.00 0.00 2.73
869 904 4.684484 ATTATGAAACGGAGGGAGTACC 57.316 45.455 0.00 0.00 40.67 3.34
903 938 9.847224 GATTAATTTCCCAGAACAGGAACTATA 57.153 33.333 0.00 0.00 43.08 1.31
928 971 4.776349 TGGTGATTAACATCGCATTAGGT 58.224 39.130 0.00 0.00 41.15 3.08
931 974 5.756347 GGTGATTAACATCGCATTAGGTGTA 59.244 40.000 0.00 0.00 41.15 2.90
936 979 3.521560 ACATCGCATTAGGTGTACAGTG 58.478 45.455 0.00 0.00 0.00 3.66
947 990 0.104120 TGTACAGTGCACGTGCTCTT 59.896 50.000 35.29 27.47 42.25 2.85
1004 1049 0.708370 CACCACATCTCGTTTCGACG 59.292 55.000 0.00 0.00 0.00 5.12
1005 1050 1.007336 ACCACATCTCGTTTCGACGC 61.007 55.000 0.00 0.00 0.00 5.19
1006 1051 1.006825 CCACATCTCGTTTCGACGCA 61.007 55.000 0.00 0.00 0.00 5.24
1007 1052 0.992072 CACATCTCGTTTCGACGCAT 59.008 50.000 0.00 0.00 0.00 4.73
1009 1054 0.314578 CATCTCGTTTCGACGCATGC 60.315 55.000 7.91 7.91 0.00 4.06
1010 1055 0.735978 ATCTCGTTTCGACGCATGCA 60.736 50.000 19.57 0.00 0.00 3.96
1011 1056 1.225475 CTCGTTTCGACGCATGCAC 60.225 57.895 19.57 10.09 0.00 4.57
1024 1069 1.520494 CATGCACTGCAACACTCTCT 58.480 50.000 8.03 0.00 43.62 3.10
1025 1070 1.463831 CATGCACTGCAACACTCTCTC 59.536 52.381 8.03 0.00 43.62 3.20
1026 1071 0.598419 TGCACTGCAACACTCTCTCG 60.598 55.000 0.00 0.00 34.76 4.04
1027 1072 1.895280 GCACTGCAACACTCTCTCGC 61.895 60.000 0.00 0.00 0.00 5.03
1028 1073 0.598419 CACTGCAACACTCTCTCGCA 60.598 55.000 0.00 0.00 0.00 5.10
1029 1074 0.598680 ACTGCAACACTCTCTCGCAC 60.599 55.000 0.00 0.00 0.00 5.34
1035 1080 1.164411 ACACTCTCTCGCACTCTCTG 58.836 55.000 0.00 0.00 0.00 3.35
1042 1087 2.290367 CTCTCGCACTCTCTGGTGATAG 59.710 54.545 0.00 0.00 39.34 2.08
1043 1088 2.020720 CTCGCACTCTCTGGTGATAGT 58.979 52.381 0.00 0.00 39.34 2.12
1046 1091 4.207955 TCGCACTCTCTGGTGATAGTTAT 58.792 43.478 0.00 0.00 39.34 1.89
1053 1098 6.602406 ACTCTCTGGTGATAGTTATAACACGT 59.398 38.462 17.65 3.03 35.97 4.49
1318 1390 3.441290 CTCGCGGGAGAGGTCGTT 61.441 66.667 24.08 0.00 43.27 3.85
1478 1550 0.667792 GAAGGCCGGCGTCATATCTC 60.668 60.000 23.85 11.36 0.00 2.75
1522 2568 8.158789 TCATCATTGTATGAATCATTAGCTCCA 58.841 33.333 0.00 0.00 43.50 3.86
1523 2569 7.974482 TCATTGTATGAATCATTAGCTCCAG 57.026 36.000 0.00 0.00 36.11 3.86
1525 2571 8.212995 TCATTGTATGAATCATTAGCTCCAGAA 58.787 33.333 0.00 0.00 36.11 3.02
1677 3750 9.803507 AGATGCTCTCATATGAAAATCCAATAA 57.196 29.630 6.90 0.00 31.96 1.40
1764 3872 9.860898 AAGATTCTTTTTGCAACCATAATACTC 57.139 29.630 0.00 0.00 0.00 2.59
1765 3873 8.470002 AGATTCTTTTTGCAACCATAATACTCC 58.530 33.333 0.00 0.00 0.00 3.85
1848 4117 9.793252 TCTTTTGTTATCTAGACACGTTATACC 57.207 33.333 0.00 0.00 0.00 2.73
1850 4119 6.304356 TGTTATCTAGACACGTTATACCCG 57.696 41.667 0.00 0.00 0.00 5.28
1851 4120 5.239306 TGTTATCTAGACACGTTATACCCGG 59.761 44.000 0.00 0.00 0.00 5.73
1853 4122 3.206150 TCTAGACACGTTATACCCGGAC 58.794 50.000 0.73 0.00 0.00 4.79
1855 4124 1.747355 AGACACGTTATACCCGGACAG 59.253 52.381 0.73 0.00 0.00 3.51
1856 4125 1.745087 GACACGTTATACCCGGACAGA 59.255 52.381 0.73 0.00 0.00 3.41
1857 4126 1.747355 ACACGTTATACCCGGACAGAG 59.253 52.381 0.73 0.00 0.00 3.35
1858 4127 2.019249 CACGTTATACCCGGACAGAGA 58.981 52.381 0.73 0.00 0.00 3.10
1859 4128 2.621998 CACGTTATACCCGGACAGAGAT 59.378 50.000 0.73 0.00 0.00 2.75
1860 4129 2.883386 ACGTTATACCCGGACAGAGATC 59.117 50.000 0.73 0.00 0.00 2.75
1861 4130 2.882761 CGTTATACCCGGACAGAGATCA 59.117 50.000 0.73 0.00 0.00 2.92
1862 4131 3.058155 CGTTATACCCGGACAGAGATCAG 60.058 52.174 0.73 0.00 0.00 2.90
1863 4132 2.002505 ATACCCGGACAGAGATCAGG 57.997 55.000 0.73 0.00 34.03 3.86
1864 4133 0.629596 TACCCGGACAGAGATCAGGT 59.370 55.000 0.73 0.00 32.49 4.00
1865 4134 0.972983 ACCCGGACAGAGATCAGGTG 60.973 60.000 0.73 0.00 32.49 4.00
1866 4135 0.684479 CCCGGACAGAGATCAGGTGA 60.684 60.000 0.73 0.00 32.49 4.02
1867 4136 0.457851 CCGGACAGAGATCAGGTGAC 59.542 60.000 0.00 0.00 0.00 3.67
1868 4137 1.177401 CGGACAGAGATCAGGTGACA 58.823 55.000 0.00 0.00 0.00 3.58
1869 4138 1.753649 CGGACAGAGATCAGGTGACAT 59.246 52.381 0.00 0.00 0.00 3.06
1870 4139 2.480932 CGGACAGAGATCAGGTGACATG 60.481 54.545 0.00 0.00 0.00 3.21
1871 4140 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
1872 4141 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
1873 4142 2.277969 CAGAGATCAGGTGACATGCAC 58.722 52.381 10.63 10.63 46.98 4.57
1891 4160 2.660490 CACCTTTTGCATGTTACCGTG 58.340 47.619 0.00 0.00 0.00 4.94
1892 4161 2.034053 CACCTTTTGCATGTTACCGTGT 59.966 45.455 0.00 0.00 0.00 4.49
1893 4162 2.034053 ACCTTTTGCATGTTACCGTGTG 59.966 45.455 0.00 0.00 0.00 3.82
1894 4163 2.050691 CTTTTGCATGTTACCGTGTGC 58.949 47.619 0.00 0.00 38.05 4.57
1895 4164 0.312416 TTTGCATGTTACCGTGTGCC 59.688 50.000 0.00 0.00 36.79 5.01
1896 4165 0.536233 TTGCATGTTACCGTGTGCCT 60.536 50.000 0.00 0.00 36.79 4.75
1897 4166 0.536233 TGCATGTTACCGTGTGCCTT 60.536 50.000 0.00 0.00 36.79 4.35
1898 4167 0.109781 GCATGTTACCGTGTGCCTTG 60.110 55.000 0.00 0.00 0.00 3.61
1899 4168 0.109781 CATGTTACCGTGTGCCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
1900 4169 1.573829 ATGTTACCGTGTGCCTTGCG 61.574 55.000 0.00 0.00 0.00 4.85
1901 4170 3.350612 TTACCGTGTGCCTTGCGC 61.351 61.111 0.00 0.00 39.75 6.09
1908 4177 3.747976 GTGCCTTGCGCCCGAATT 61.748 61.111 4.18 0.00 36.24 2.17
1909 4178 3.439540 TGCCTTGCGCCCGAATTC 61.440 61.111 4.18 0.00 36.24 2.17
1910 4179 3.439540 GCCTTGCGCCCGAATTCA 61.440 61.111 4.18 0.00 0.00 2.57
1911 4180 2.988688 GCCTTGCGCCCGAATTCAA 61.989 57.895 4.18 0.00 0.00 2.69
1912 4181 1.583986 CCTTGCGCCCGAATTCAAA 59.416 52.632 4.18 0.00 0.00 2.69
1913 4182 0.173255 CCTTGCGCCCGAATTCAAAT 59.827 50.000 4.18 0.00 0.00 2.32
1914 4183 1.404047 CCTTGCGCCCGAATTCAAATT 60.404 47.619 4.18 0.00 0.00 1.82
1915 4184 2.336667 CTTGCGCCCGAATTCAAATTT 58.663 42.857 4.18 0.00 0.00 1.82
1916 4185 3.506810 CTTGCGCCCGAATTCAAATTTA 58.493 40.909 4.18 0.00 0.00 1.40
1917 4186 3.577649 TGCGCCCGAATTCAAATTTAA 57.422 38.095 4.18 0.00 0.00 1.52
1918 4187 3.914312 TGCGCCCGAATTCAAATTTAAA 58.086 36.364 4.18 0.00 0.00 1.52
1919 4188 3.675698 TGCGCCCGAATTCAAATTTAAAC 59.324 39.130 4.18 0.00 0.00 2.01
1920 4189 3.675698 GCGCCCGAATTCAAATTTAAACA 59.324 39.130 6.22 0.00 0.00 2.83
1923 4192 6.239945 CGCCCGAATTCAAATTTAAACATTG 58.760 36.000 6.22 8.56 0.00 2.82
1928 4197 8.006590 CCGAATTCAAATTTAAACATTGCGAAA 58.993 29.630 6.22 0.00 0.00 3.46
1960 4229 3.945981 AAATCATGCATGTTCACAGCA 57.054 38.095 25.43 4.73 43.14 4.41
1961 4230 2.933495 ATCATGCATGTTCACAGCAC 57.067 45.000 25.43 0.00 41.60 4.40
1962 4231 1.606903 TCATGCATGTTCACAGCACA 58.393 45.000 25.43 0.00 41.60 4.57
1963 4232 2.164338 TCATGCATGTTCACAGCACAT 58.836 42.857 25.43 0.00 41.60 3.21
1964 4233 3.345414 TCATGCATGTTCACAGCACATA 58.655 40.909 25.43 0.00 41.60 2.29
1965 4234 3.949113 TCATGCATGTTCACAGCACATAT 59.051 39.130 25.43 0.00 41.60 1.78
1966 4235 4.399934 TCATGCATGTTCACAGCACATATT 59.600 37.500 25.43 0.00 41.60 1.28
1967 4236 5.589452 TCATGCATGTTCACAGCACATATTA 59.411 36.000 25.43 0.00 41.60 0.98
1968 4237 5.893897 TGCATGTTCACAGCACATATTAA 57.106 34.783 0.00 0.00 32.88 1.40
1969 4238 5.882553 TGCATGTTCACAGCACATATTAAG 58.117 37.500 0.00 0.00 32.88 1.85
1970 4239 5.647225 TGCATGTTCACAGCACATATTAAGA 59.353 36.000 0.00 0.00 32.88 2.10
1971 4240 6.319405 TGCATGTTCACAGCACATATTAAGAT 59.681 34.615 0.00 0.00 32.88 2.40
1972 4241 6.635641 GCATGTTCACAGCACATATTAAGATG 59.364 38.462 8.52 8.52 32.88 2.90
1973 4242 7.467675 GCATGTTCACAGCACATATTAAGATGA 60.468 37.037 16.70 0.00 32.88 2.92
1974 4243 7.307493 TGTTCACAGCACATATTAAGATGAC 57.693 36.000 16.70 8.16 0.00 3.06
1975 4244 7.105588 TGTTCACAGCACATATTAAGATGACT 58.894 34.615 16.70 10.16 0.00 3.41
1976 4245 7.278646 TGTTCACAGCACATATTAAGATGACTC 59.721 37.037 16.70 5.26 0.00 3.36
1977 4246 6.283694 TCACAGCACATATTAAGATGACTCC 58.716 40.000 16.70 2.36 0.00 3.85
1978 4247 6.098838 TCACAGCACATATTAAGATGACTCCT 59.901 38.462 16.70 4.40 0.00 3.69
1979 4248 7.287696 TCACAGCACATATTAAGATGACTCCTA 59.712 37.037 16.70 0.00 0.00 2.94
1980 4249 7.928167 CACAGCACATATTAAGATGACTCCTAA 59.072 37.037 16.70 0.00 0.00 2.69
1981 4250 8.486210 ACAGCACATATTAAGATGACTCCTAAA 58.514 33.333 16.70 0.00 0.00 1.85
1982 4251 9.330063 CAGCACATATTAAGATGACTCCTAAAA 57.670 33.333 16.70 0.00 0.00 1.52
1983 4252 9.905713 AGCACATATTAAGATGACTCCTAAAAA 57.094 29.630 16.70 0.00 0.00 1.94
2009 4278 7.680442 TCCAGATCAAAATTCGAAACATACA 57.320 32.000 0.00 0.00 0.00 2.29
2010 4279 8.279970 TCCAGATCAAAATTCGAAACATACAT 57.720 30.769 0.00 0.00 0.00 2.29
2011 4280 8.397906 TCCAGATCAAAATTCGAAACATACATC 58.602 33.333 0.00 0.31 0.00 3.06
2013 4282 8.116136 CAGATCAAAATTCGAAACATACATCGA 58.884 33.333 0.00 0.00 45.48 3.59
2048 4381 8.976986 AAGAAAAATCTGTCATGAATAGTTGC 57.023 30.769 0.00 0.00 0.00 4.17
2053 4394 5.723492 TCTGTCATGAATAGTTGCGAATG 57.277 39.130 0.00 0.00 0.00 2.67
2055 4396 4.260985 TGTCATGAATAGTTGCGAATGGT 58.739 39.130 0.00 0.00 0.00 3.55
2056 4397 4.699735 TGTCATGAATAGTTGCGAATGGTT 59.300 37.500 0.00 0.00 0.00 3.67
2057 4398 5.163764 TGTCATGAATAGTTGCGAATGGTTC 60.164 40.000 0.00 0.00 0.00 3.62
2059 4400 5.294306 TCATGAATAGTTGCGAATGGTTCTC 59.706 40.000 0.00 0.00 0.00 2.87
2061 4402 4.631377 TGAATAGTTGCGAATGGTTCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
2062 4403 2.550830 AGTTGCGAATGGTTCTCTGT 57.449 45.000 0.00 0.00 0.00 3.41
2063 4404 2.146342 AGTTGCGAATGGTTCTCTGTG 58.854 47.619 0.00 0.00 0.00 3.66
2064 4405 1.873591 GTTGCGAATGGTTCTCTGTGT 59.126 47.619 0.00 0.00 0.00 3.72
2066 4407 2.683968 TGCGAATGGTTCTCTGTGTAC 58.316 47.619 0.00 0.00 0.00 2.90
2067 4408 2.299013 TGCGAATGGTTCTCTGTGTACT 59.701 45.455 0.00 0.00 0.00 2.73
2068 4409 3.508402 TGCGAATGGTTCTCTGTGTACTA 59.492 43.478 0.00 0.00 0.00 1.82
2070 4411 5.109903 GCGAATGGTTCTCTGTGTACTATT 58.890 41.667 0.00 0.00 31.87 1.73
2071 4412 5.232414 GCGAATGGTTCTCTGTGTACTATTC 59.768 44.000 12.30 12.30 39.08 1.75
2072 4413 6.330278 CGAATGGTTCTCTGTGTACTATTCA 58.670 40.000 18.21 0.00 40.92 2.57
2073 4414 6.253727 CGAATGGTTCTCTGTGTACTATTCAC 59.746 42.308 18.21 0.00 40.92 3.18
2075 4416 6.605471 TGGTTCTCTGTGTACTATTCACAT 57.395 37.500 0.00 0.00 43.39 3.21
2077 4418 7.772166 TGGTTCTCTGTGTACTATTCACATAG 58.228 38.462 0.00 0.00 43.39 2.23
2078 4419 7.396339 TGGTTCTCTGTGTACTATTCACATAGT 59.604 37.037 9.84 0.77 46.35 2.12
2080 4421 9.640963 GTTCTCTGTGTACTATTCACATAGTTT 57.359 33.333 0.34 0.00 42.73 2.66
2081 4422 9.856488 TTCTCTGTGTACTATTCACATAGTTTC 57.144 33.333 0.34 0.00 42.73 2.78
2082 4423 9.244292 TCTCTGTGTACTATTCACATAGTTTCT 57.756 33.333 0.34 0.00 42.73 2.52
2084 4425 9.244292 TCTGTGTACTATTCACATAGTTTCTCT 57.756 33.333 0.34 0.00 42.73 3.10
2085 4426 9.295214 CTGTGTACTATTCACATAGTTTCTCTG 57.705 37.037 0.34 0.00 42.73 3.35
2086 4427 8.803235 TGTGTACTATTCACATAGTTTCTCTGT 58.197 33.333 0.34 0.00 42.73 3.41
2324 4676 3.190323 ATCGCCGCGTACGTATGCT 62.190 57.895 31.06 14.16 37.70 3.79
2435 4948 3.940975 CTACCGTATAGCCGCCGCG 62.941 68.421 5.59 5.59 41.18 6.46
2543 5057 3.873883 GCCTCAGCACATCAGCGC 61.874 66.667 0.00 0.00 40.15 5.92
2653 5167 1.865865 ACTTACGGTGTCAACAGCAG 58.134 50.000 12.33 7.62 44.00 4.24
3091 5617 1.826385 GGATGAAGGACAGTTGTGGG 58.174 55.000 0.00 0.00 0.00 4.61
3103 5629 2.632512 CAGTTGTGGGGCCTGTTATTTT 59.367 45.455 0.84 0.00 0.00 1.82
3104 5630 3.829601 CAGTTGTGGGGCCTGTTATTTTA 59.170 43.478 0.84 0.00 0.00 1.52
3105 5631 4.466015 CAGTTGTGGGGCCTGTTATTTTAT 59.534 41.667 0.84 0.00 0.00 1.40
3106 5632 5.046663 CAGTTGTGGGGCCTGTTATTTTATT 60.047 40.000 0.84 0.00 0.00 1.40
3107 5633 5.546110 AGTTGTGGGGCCTGTTATTTTATTT 59.454 36.000 0.84 0.00 0.00 1.40
3108 5634 6.726764 AGTTGTGGGGCCTGTTATTTTATTTA 59.273 34.615 0.84 0.00 0.00 1.40
3109 5635 7.401782 AGTTGTGGGGCCTGTTATTTTATTTAT 59.598 33.333 0.84 0.00 0.00 1.40
3110 5636 7.741554 TGTGGGGCCTGTTATTTTATTTATT 57.258 32.000 0.84 0.00 0.00 1.40
3111 5637 8.152023 TGTGGGGCCTGTTATTTTATTTATTT 57.848 30.769 0.84 0.00 0.00 1.40
3112 5638 9.268282 TGTGGGGCCTGTTATTTTATTTATTTA 57.732 29.630 0.84 0.00 0.00 1.40
3167 5701 6.567050 TGTAATACCACCAACTAGATCGTTC 58.433 40.000 0.00 0.00 0.00 3.95
3179 5713 8.191446 CCAACTAGATCGTTCCTGGTATATATG 58.809 40.741 0.00 0.00 0.00 1.78
3184 5720 6.493802 AGATCGTTCCTGGTATATATGTGTGT 59.506 38.462 0.00 0.00 0.00 3.72
3191 6076 6.608002 TCCTGGTATATATGTGTGTGTGTGTA 59.392 38.462 0.00 0.00 0.00 2.90
3230 6115 5.351948 ACAAGGCCTTTTGTGTGTAAAAT 57.648 34.783 17.61 0.00 39.68 1.82
3399 6375 4.512944 ACATGTGATCGCTCATAAATGTCC 59.487 41.667 7.94 0.00 32.09 4.02
3453 6429 0.750850 TTCCTTCGGATGGGATCGAC 59.249 55.000 9.78 0.00 34.99 4.20
3501 6481 4.965119 AATAGCGGATTTGGTCAGAAAC 57.035 40.909 0.00 0.00 0.00 2.78
3502 6482 2.568623 AGCGGATTTGGTCAGAAACT 57.431 45.000 0.00 0.00 0.00 2.66
3572 6552 1.651770 AGAGTATTCTCCTGGGTGGGA 59.348 52.381 0.00 0.00 41.26 4.37
3655 6636 9.606631 TTGGTGCTGTTTTATTAAAGTTTTGAT 57.393 25.926 0.00 0.00 0.00 2.57
3826 7164 2.029828 GGCAAAGAAGAGACGAGACTCA 60.030 50.000 2.82 0.00 39.14 3.41
3834 7172 1.469308 GAGACGAGACTCACACGGAAT 59.531 52.381 2.82 0.00 36.94 3.01
3969 7329 4.214971 GGTATTCTTATCTCGGCGTAGACA 59.785 45.833 6.85 0.00 27.25 3.41
4020 7382 9.716507 TGATTTCTCTTCGTTCTGTTTAAAAAG 57.283 29.630 0.00 0.00 0.00 2.27
4029 7391 7.818642 TCGTTCTGTTTAAAAAGAAAAGGTCA 58.181 30.769 20.10 0.00 34.33 4.02
4061 7424 6.827586 TTTTCAGATACCGCAAAAATACCT 57.172 33.333 0.00 0.00 0.00 3.08
4096 7482 6.975772 GCATACTGTGGTTTACAAAACTTTGA 59.024 34.615 9.12 0.00 40.55 2.69
4166 7554 6.702716 TTTTTCAGAAACCACGGTATTCTT 57.297 33.333 0.00 0.00 31.26 2.52
4174 7562 6.993902 AGAAACCACGGTATTCTTAGAAAACA 59.006 34.615 0.00 0.00 29.35 2.83
4191 7583 7.671495 AGAAAACATTGAAAAACTTTGCTGT 57.329 28.000 0.00 0.00 0.00 4.40
4207 7599 0.236711 CTGTCAAACGCAGCCTGAAG 59.763 55.000 0.00 0.00 0.00 3.02
4211 7603 0.040958 CAAACGCAGCCTGAAGTGTC 60.041 55.000 0.00 0.00 0.00 3.67
4212 7604 0.463654 AAACGCAGCCTGAAGTGTCA 60.464 50.000 0.00 0.00 0.00 3.58
4213 7605 1.160329 AACGCAGCCTGAAGTGTCAC 61.160 55.000 0.00 0.00 0.00 3.67
4214 7606 2.320587 CGCAGCCTGAAGTGTCACC 61.321 63.158 0.00 0.00 0.00 4.02
4215 7607 1.072159 GCAGCCTGAAGTGTCACCT 59.928 57.895 0.00 0.00 0.00 4.00
4216 7608 1.233285 GCAGCCTGAAGTGTCACCTG 61.233 60.000 0.00 0.00 33.86 4.00
4217 7609 1.072159 AGCCTGAAGTGTCACCTGC 59.928 57.895 0.00 0.00 0.00 4.85
4218 7610 1.072159 GCCTGAAGTGTCACCTGCT 59.928 57.895 0.00 0.00 0.00 4.24
4219 7611 0.536006 GCCTGAAGTGTCACCTGCTT 60.536 55.000 0.00 0.00 0.00 3.91
4220 7612 1.972872 CCTGAAGTGTCACCTGCTTT 58.027 50.000 0.00 0.00 0.00 3.51
4221 7613 2.301346 CCTGAAGTGTCACCTGCTTTT 58.699 47.619 0.00 0.00 0.00 2.27
4222 7614 2.033801 CCTGAAGTGTCACCTGCTTTTG 59.966 50.000 0.00 0.00 0.00 2.44
4223 7615 2.684881 CTGAAGTGTCACCTGCTTTTGT 59.315 45.455 0.00 0.00 0.00 2.83
4224 7616 3.088532 TGAAGTGTCACCTGCTTTTGTT 58.911 40.909 0.00 0.00 0.00 2.83
4225 7617 3.509575 TGAAGTGTCACCTGCTTTTGTTT 59.490 39.130 0.00 0.00 0.00 2.83
4226 7618 3.782889 AGTGTCACCTGCTTTTGTTTC 57.217 42.857 0.00 0.00 0.00 2.78
4227 7619 3.088532 AGTGTCACCTGCTTTTGTTTCA 58.911 40.909 0.00 0.00 0.00 2.69
4228 7620 3.701040 AGTGTCACCTGCTTTTGTTTCAT 59.299 39.130 0.00 0.00 0.00 2.57
4229 7621 4.160252 AGTGTCACCTGCTTTTGTTTCATT 59.840 37.500 0.00 0.00 0.00 2.57
4230 7622 4.268405 GTGTCACCTGCTTTTGTTTCATTG 59.732 41.667 0.00 0.00 0.00 2.82
4231 7623 3.803778 GTCACCTGCTTTTGTTTCATTGG 59.196 43.478 0.00 0.00 0.00 3.16
4232 7624 2.545106 CACCTGCTTTTGTTTCATTGGC 59.455 45.455 0.00 0.00 0.00 4.52
4233 7625 2.435437 ACCTGCTTTTGTTTCATTGGCT 59.565 40.909 0.00 0.00 0.00 4.75
4234 7626 3.640967 ACCTGCTTTTGTTTCATTGGCTA 59.359 39.130 0.00 0.00 0.00 3.93
4235 7627 4.284234 ACCTGCTTTTGTTTCATTGGCTAT 59.716 37.500 0.00 0.00 0.00 2.97
4236 7628 5.221702 ACCTGCTTTTGTTTCATTGGCTATT 60.222 36.000 0.00 0.00 0.00 1.73
4237 7629 5.702209 CCTGCTTTTGTTTCATTGGCTATTT 59.298 36.000 0.00 0.00 0.00 1.40
4238 7630 6.873076 CCTGCTTTTGTTTCATTGGCTATTTA 59.127 34.615 0.00 0.00 0.00 1.40
4239 7631 7.063780 CCTGCTTTTGTTTCATTGGCTATTTAG 59.936 37.037 0.00 0.00 0.00 1.85
4240 7632 6.873076 TGCTTTTGTTTCATTGGCTATTTAGG 59.127 34.615 0.00 0.00 0.00 2.69
4250 7642 2.729028 GCTATTTAGGCCACCTCCAA 57.271 50.000 5.01 0.00 34.61 3.53
4251 7643 2.298610 GCTATTTAGGCCACCTCCAAC 58.701 52.381 5.01 0.00 34.61 3.77
4252 7644 2.561569 CTATTTAGGCCACCTCCAACG 58.438 52.381 5.01 0.00 34.61 4.10
4253 7645 0.034477 ATTTAGGCCACCTCCAACGG 60.034 55.000 5.01 0.00 34.61 4.44
4254 7646 2.132089 TTTAGGCCACCTCCAACGGG 62.132 60.000 5.01 0.00 34.61 5.28
4258 7650 3.322466 CCACCTCCAACGGGCTCT 61.322 66.667 0.00 0.00 0.00 4.09
4259 7651 2.266055 CACCTCCAACGGGCTCTC 59.734 66.667 0.00 0.00 0.00 3.20
4260 7652 2.120718 ACCTCCAACGGGCTCTCT 59.879 61.111 0.00 0.00 0.00 3.10
4261 7653 1.536662 ACCTCCAACGGGCTCTCTT 60.537 57.895 0.00 0.00 0.00 2.85
4262 7654 0.252103 ACCTCCAACGGGCTCTCTTA 60.252 55.000 0.00 0.00 0.00 2.10
4263 7655 0.461961 CCTCCAACGGGCTCTCTTAG 59.538 60.000 0.00 0.00 0.00 2.18
4264 7656 1.475403 CTCCAACGGGCTCTCTTAGA 58.525 55.000 0.00 0.00 0.00 2.10
4265 7657 1.407258 CTCCAACGGGCTCTCTTAGAG 59.593 57.143 2.23 2.23 45.04 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.472361 TTCTAATTTACCGTGTATTAGAGCATC 57.528 33.333 12.89 0.00 40.21 3.91
9 10 9.998106 ATTCTAATTTACCGTGTATTAGAGCAT 57.002 29.630 12.89 6.57 40.21 3.79
32 33 3.370978 CACATGTGGACAACGGTCTATTC 59.629 47.826 18.51 0.00 43.77 1.75
41 42 2.038557 AGGGAGTACACATGTGGACAAC 59.961 50.000 36.49 28.64 46.74 3.32
75 83 5.004440 GCTGTACACAACACGACTATATGTG 59.996 44.000 0.00 2.90 45.18 3.21
82 90 0.750850 AGGCTGTACACAACACGACT 59.249 50.000 0.00 0.00 33.45 4.18
83 91 1.137513 GAGGCTGTACACAACACGAC 58.862 55.000 0.00 0.00 33.45 4.34
85 93 0.859232 GTGAGGCTGTACACAACACG 59.141 55.000 0.00 0.00 37.05 4.49
95 103 1.274728 GTGATCTGTCTGTGAGGCTGT 59.725 52.381 0.00 0.00 0.00 4.40
96 104 1.274447 TGTGATCTGTCTGTGAGGCTG 59.726 52.381 0.00 0.00 0.00 4.85
101 109 6.180472 TGTACTCTATGTGATCTGTCTGTGA 58.820 40.000 0.00 0.00 0.00 3.58
105 113 5.010516 GCCATGTACTCTATGTGATCTGTCT 59.989 44.000 0.00 0.00 0.00 3.41
106 114 5.010516 AGCCATGTACTCTATGTGATCTGTC 59.989 44.000 0.00 0.00 0.00 3.51
107 115 4.898265 AGCCATGTACTCTATGTGATCTGT 59.102 41.667 0.00 0.00 0.00 3.41
111 119 7.164122 CCATAAAGCCATGTACTCTATGTGAT 58.836 38.462 0.00 0.00 0.00 3.06
115 123 7.766278 GGATACCATAAAGCCATGTACTCTATG 59.234 40.741 0.00 0.00 0.00 2.23
126 134 8.383175 CCTTATCTTTAGGATACCATAAAGCCA 58.617 37.037 0.00 0.00 38.37 4.75
188 196 8.275187 TGGGACATATGAGGATAATGTTAGTT 57.725 34.615 10.38 0.00 0.00 2.24
204 212 2.619590 GGACGGTTGGTTTGGGACATAT 60.620 50.000 0.00 0.00 39.30 1.78
253 261 3.314635 CGGAGGGAGTACACATGTAGTAC 59.685 52.174 21.26 21.26 41.59 2.73
255 263 2.291411 ACGGAGGGAGTACACATGTAGT 60.291 50.000 0.00 1.92 36.91 2.73
256 264 2.376109 ACGGAGGGAGTACACATGTAG 58.624 52.381 0.00 0.00 0.00 2.74
257 265 2.519771 ACGGAGGGAGTACACATGTA 57.480 50.000 0.00 0.00 0.00 2.29
258 266 1.549170 GAACGGAGGGAGTACACATGT 59.451 52.381 0.00 0.00 0.00 3.21
259 267 1.134788 GGAACGGAGGGAGTACACATG 60.135 57.143 0.00 0.00 0.00 3.21
261 269 0.113776 AGGAACGGAGGGAGTACACA 59.886 55.000 0.00 0.00 0.00 3.72
262 270 2.134789 TAGGAACGGAGGGAGTACAC 57.865 55.000 0.00 0.00 0.00 2.90
263 271 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
264 272 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
265 273 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
266 274 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
267 275 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
269 277 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
270 278 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
287 295 9.466497 TCCATAATGCAATCTCTAAAAAGACTT 57.534 29.630 0.00 0.00 0.00 3.01
288 296 8.897752 GTCCATAATGCAATCTCTAAAAAGACT 58.102 33.333 0.00 0.00 0.00 3.24
289 297 8.897752 AGTCCATAATGCAATCTCTAAAAAGAC 58.102 33.333 0.00 0.00 0.00 3.01
292 300 9.679661 TGTAGTCCATAATGCAATCTCTAAAAA 57.320 29.630 0.00 0.00 0.00 1.94
293 301 9.851686 ATGTAGTCCATAATGCAATCTCTAAAA 57.148 29.630 0.00 0.00 29.82 1.52
295 303 9.929180 GTATGTAGTCCATAATGCAATCTCTAA 57.071 33.333 0.00 0.00 37.77 2.10
296 304 8.244113 CGTATGTAGTCCATAATGCAATCTCTA 58.756 37.037 0.00 0.00 37.77 2.43
297 305 7.093354 CGTATGTAGTCCATAATGCAATCTCT 58.907 38.462 0.00 0.00 37.77 3.10
298 306 6.311445 CCGTATGTAGTCCATAATGCAATCTC 59.689 42.308 0.00 0.00 37.77 2.75
299 307 6.014584 TCCGTATGTAGTCCATAATGCAATCT 60.015 38.462 0.00 0.00 37.77 2.40
300 308 6.163476 TCCGTATGTAGTCCATAATGCAATC 58.837 40.000 0.00 0.00 37.77 2.67
301 309 6.109156 TCCGTATGTAGTCCATAATGCAAT 57.891 37.500 0.00 0.00 37.77 3.56
302 310 5.538118 CTCCGTATGTAGTCCATAATGCAA 58.462 41.667 0.00 0.00 37.77 4.08
303 311 4.560716 GCTCCGTATGTAGTCCATAATGCA 60.561 45.833 0.00 0.00 37.77 3.96
304 312 3.927142 GCTCCGTATGTAGTCCATAATGC 59.073 47.826 0.00 0.00 37.77 3.56
305 313 5.134202 TGCTCCGTATGTAGTCCATAATG 57.866 43.478 0.00 0.00 37.77 1.90
306 314 5.801531 TTGCTCCGTATGTAGTCCATAAT 57.198 39.130 0.00 0.00 37.77 1.28
307 315 5.601583 TTTGCTCCGTATGTAGTCCATAA 57.398 39.130 0.00 0.00 37.77 1.90
308 316 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
309 317 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
310 318 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
311 319 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
312 320 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
313 321 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
314 322 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
315 323 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
316 324 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
317 325 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
318 326 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
319 327 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
320 328 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
321 329 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
322 330 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
323 331 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
324 332 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
353 361 9.875691 AACTACGTACGGATGTATATAGACATA 57.124 33.333 21.06 0.00 40.18 2.29
354 362 8.783833 AACTACGTACGGATGTATATAGACAT 57.216 34.615 21.06 12.70 42.82 3.06
355 363 8.498358 CAAACTACGTACGGATGTATATAGACA 58.502 37.037 21.06 2.07 32.11 3.41
356 364 8.499162 ACAAACTACGTACGGATGTATATAGAC 58.501 37.037 21.06 0.00 32.11 2.59
357 365 8.607441 ACAAACTACGTACGGATGTATATAGA 57.393 34.615 21.06 0.00 32.11 1.98
358 366 9.964253 CTACAAACTACGTACGGATGTATATAG 57.036 37.037 21.06 11.46 32.11 1.31
359 367 9.489084 ACTACAAACTACGTACGGATGTATATA 57.511 33.333 21.06 0.00 32.11 0.86
360 368 8.285394 CACTACAAACTACGTACGGATGTATAT 58.715 37.037 21.06 5.66 32.11 0.86
361 369 7.494298 TCACTACAAACTACGTACGGATGTATA 59.506 37.037 21.06 0.30 32.11 1.47
362 370 6.316140 TCACTACAAACTACGTACGGATGTAT 59.684 38.462 21.06 4.88 32.11 2.29
363 371 5.641636 TCACTACAAACTACGTACGGATGTA 59.358 40.000 21.06 15.28 0.00 2.29
364 372 4.455533 TCACTACAAACTACGTACGGATGT 59.544 41.667 21.06 14.94 0.00 3.06
365 373 4.973396 TCACTACAAACTACGTACGGATG 58.027 43.478 21.06 9.21 0.00 3.51
366 374 5.627499 TTCACTACAAACTACGTACGGAT 57.373 39.130 21.06 1.34 0.00 4.18
367 375 5.431420 TTTCACTACAAACTACGTACGGA 57.569 39.130 21.06 10.81 0.00 4.69
368 376 6.088824 AGATTTCACTACAAACTACGTACGG 58.911 40.000 21.06 5.00 0.00 4.02
369 377 7.020010 AGAGATTTCACTACAAACTACGTACG 58.980 38.462 15.01 15.01 0.00 3.67
370 378 9.831737 TTAGAGATTTCACTACAAACTACGTAC 57.168 33.333 0.00 0.00 0.00 3.67
372 380 9.754382 TTTTAGAGATTTCACTACAAACTACGT 57.246 29.630 0.00 0.00 0.00 3.57
398 406 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
399 407 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
400 408 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
401 409 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
402 410 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
403 411 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
404 412 8.175431 AGATACTCCCTCCGTTCCTAAATATAA 58.825 37.037 0.00 0.00 0.00 0.98
405 413 7.706674 AGATACTCCCTCCGTTCCTAAATATA 58.293 38.462 0.00 0.00 0.00 0.86
406 414 6.563163 AGATACTCCCTCCGTTCCTAAATAT 58.437 40.000 0.00 0.00 0.00 1.28
407 415 5.961897 AGATACTCCCTCCGTTCCTAAATA 58.038 41.667 0.00 0.00 0.00 1.40
408 416 4.817286 AGATACTCCCTCCGTTCCTAAAT 58.183 43.478 0.00 0.00 0.00 1.40
409 417 4.261411 AGATACTCCCTCCGTTCCTAAA 57.739 45.455 0.00 0.00 0.00 1.85
410 418 3.967467 AGATACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
411 419 3.967467 AAGATACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
412 420 2.850695 AAGATACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
413 421 3.908643 AAAAGATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
414 422 4.750598 GCATAAAAGATACTCCCTCCGTTC 59.249 45.833 0.00 0.00 0.00 3.95
415 423 4.163458 TGCATAAAAGATACTCCCTCCGTT 59.837 41.667 0.00 0.00 0.00 4.44
416 424 3.709653 TGCATAAAAGATACTCCCTCCGT 59.290 43.478 0.00 0.00 0.00 4.69
417 425 4.336889 TGCATAAAAGATACTCCCTCCG 57.663 45.455 0.00 0.00 0.00 4.63
418 426 5.885912 TGTTTGCATAAAAGATACTCCCTCC 59.114 40.000 0.00 0.00 0.00 4.30
419 427 7.391148 TTGTTTGCATAAAAGATACTCCCTC 57.609 36.000 0.00 0.00 0.00 4.30
420 428 7.775053 TTTGTTTGCATAAAAGATACTCCCT 57.225 32.000 0.00 0.00 0.00 4.20
421 429 7.063426 GCTTTTGTTTGCATAAAAGATACTCCC 59.937 37.037 24.01 9.49 43.25 4.30
422 430 7.814587 AGCTTTTGTTTGCATAAAAGATACTCC 59.185 33.333 24.01 12.15 43.25 3.85
423 431 8.748380 AGCTTTTGTTTGCATAAAAGATACTC 57.252 30.769 24.01 12.61 43.25 2.59
424 432 8.359642 TGAGCTTTTGTTTGCATAAAAGATACT 58.640 29.630 24.01 16.01 41.09 2.12
425 433 8.519492 TGAGCTTTTGTTTGCATAAAAGATAC 57.481 30.769 24.01 16.10 41.09 2.24
426 434 9.357652 GATGAGCTTTTGTTTGCATAAAAGATA 57.642 29.630 24.01 14.47 41.09 1.98
427 435 7.874016 TGATGAGCTTTTGTTTGCATAAAAGAT 59.126 29.630 24.01 20.57 42.95 2.40
428 436 7.208777 TGATGAGCTTTTGTTTGCATAAAAGA 58.791 30.769 24.01 11.59 43.25 2.52
429 437 7.170320 ACTGATGAGCTTTTGTTTGCATAAAAG 59.830 33.333 19.11 19.11 43.36 2.27
430 438 6.985645 ACTGATGAGCTTTTGTTTGCATAAAA 59.014 30.769 0.00 0.00 0.00 1.52
431 439 6.514947 ACTGATGAGCTTTTGTTTGCATAAA 58.485 32.000 0.00 0.00 0.00 1.40
432 440 6.088016 ACTGATGAGCTTTTGTTTGCATAA 57.912 33.333 0.00 0.00 0.00 1.90
437 445 5.400485 GCAAGTACTGATGAGCTTTTGTTTG 59.600 40.000 0.00 0.00 0.00 2.93
446 454 4.142271 ACTGTCTAGCAAGTACTGATGAGC 60.142 45.833 0.00 0.00 0.00 4.26
455 463 9.909644 CTTAAGTTCTTAACTGTCTAGCAAGTA 57.090 33.333 0.00 0.00 41.91 2.24
457 465 7.385205 TGCTTAAGTTCTTAACTGTCTAGCAAG 59.615 37.037 4.02 0.00 41.91 4.01
458 466 7.214381 TGCTTAAGTTCTTAACTGTCTAGCAA 58.786 34.615 4.02 2.69 41.91 3.91
534 566 1.686052 GAGTTTGGTGGCATTTGTCCA 59.314 47.619 0.00 0.00 0.00 4.02
535 567 1.686052 TGAGTTTGGTGGCATTTGTCC 59.314 47.619 0.00 0.00 0.00 4.02
567 599 3.512724 TGTACTCTTTACTGGCCTACCAC 59.487 47.826 3.32 0.00 42.67 4.16
618 653 9.806448 AAACATATATATGCACCACATTAGGAA 57.194 29.630 20.46 0.00 40.38 3.36
619 654 9.806448 AAAACATATATATGCACCACATTAGGA 57.194 29.630 20.46 0.00 40.38 2.94
683 718 9.508567 GCATTCTAGATGTAAATGTTTTTCTCC 57.491 33.333 0.00 0.00 33.82 3.71
684 719 9.508567 GGCATTCTAGATGTAAATGTTTTTCTC 57.491 33.333 0.00 0.00 33.82 2.87
685 720 9.023962 TGGCATTCTAGATGTAAATGTTTTTCT 57.976 29.630 0.00 0.00 33.82 2.52
686 721 9.638239 TTGGCATTCTAGATGTAAATGTTTTTC 57.362 29.630 0.00 0.00 33.82 2.29
687 722 9.995003 TTTGGCATTCTAGATGTAAATGTTTTT 57.005 25.926 0.00 0.00 33.82 1.94
688 723 9.423061 GTTTGGCATTCTAGATGTAAATGTTTT 57.577 29.630 0.00 0.00 33.82 2.43
689 724 8.584157 TGTTTGGCATTCTAGATGTAAATGTTT 58.416 29.630 0.00 0.00 33.82 2.83
690 725 8.121305 TGTTTGGCATTCTAGATGTAAATGTT 57.879 30.769 0.00 0.00 33.82 2.71
691 726 7.701539 TGTTTGGCATTCTAGATGTAAATGT 57.298 32.000 0.00 0.00 33.82 2.71
697 732 9.970553 ATGATATATGTTTGGCATTCTAGATGT 57.029 29.630 0.00 0.00 38.94 3.06
797 832 9.868277 AGTCAAACATTACAAACTTTGATGAAA 57.132 25.926 8.55 0.00 35.61 2.69
798 833 9.868277 AAGTCAAACATTACAAACTTTGATGAA 57.132 25.926 8.55 0.62 35.61 2.57
799 834 9.515020 GAAGTCAAACATTACAAACTTTGATGA 57.485 29.630 8.55 0.00 35.61 2.92
800 835 9.520204 AGAAGTCAAACATTACAAACTTTGATG 57.480 29.630 8.55 5.30 35.61 3.07
801 836 9.736023 GAGAAGTCAAACATTACAAACTTTGAT 57.264 29.630 8.55 0.00 35.61 2.57
802 837 8.735315 TGAGAAGTCAAACATTACAAACTTTGA 58.265 29.630 8.55 0.00 31.68 2.69
803 838 8.909708 TGAGAAGTCAAACATTACAAACTTTG 57.090 30.769 0.00 0.00 0.00 2.77
804 839 9.921637 TTTGAGAAGTCAAACATTACAAACTTT 57.078 25.926 0.00 0.00 45.82 2.66
831 866 9.691362 GTTTCATAATTTGGTGTGTGTAGATTT 57.309 29.630 0.00 0.00 0.00 2.17
832 867 8.020819 CGTTTCATAATTTGGTGTGTGTAGATT 58.979 33.333 0.00 0.00 0.00 2.40
833 868 7.361713 CCGTTTCATAATTTGGTGTGTGTAGAT 60.362 37.037 0.00 0.00 0.00 1.98
834 869 6.072948 CCGTTTCATAATTTGGTGTGTGTAGA 60.073 38.462 0.00 0.00 0.00 2.59
835 870 6.072948 TCCGTTTCATAATTTGGTGTGTGTAG 60.073 38.462 0.00 0.00 0.00 2.74
836 871 5.763698 TCCGTTTCATAATTTGGTGTGTGTA 59.236 36.000 0.00 0.00 0.00 2.90
837 872 4.580995 TCCGTTTCATAATTTGGTGTGTGT 59.419 37.500 0.00 0.00 0.00 3.72
838 873 5.114785 TCCGTTTCATAATTTGGTGTGTG 57.885 39.130 0.00 0.00 0.00 3.82
839 874 4.217550 CCTCCGTTTCATAATTTGGTGTGT 59.782 41.667 0.00 0.00 0.00 3.72
840 875 4.380444 CCCTCCGTTTCATAATTTGGTGTG 60.380 45.833 0.00 0.00 0.00 3.82
841 876 3.761752 CCCTCCGTTTCATAATTTGGTGT 59.238 43.478 0.00 0.00 0.00 4.16
842 877 4.013728 TCCCTCCGTTTCATAATTTGGTG 58.986 43.478 0.00 0.00 0.00 4.17
843 878 4.263771 ACTCCCTCCGTTTCATAATTTGGT 60.264 41.667 0.00 0.00 0.00 3.67
844 879 4.270008 ACTCCCTCCGTTTCATAATTTGG 58.730 43.478 0.00 0.00 0.00 3.28
845 880 5.296035 GGTACTCCCTCCGTTTCATAATTTG 59.704 44.000 0.00 0.00 0.00 2.32
846 881 5.191124 AGGTACTCCCTCCGTTTCATAATTT 59.809 40.000 0.00 0.00 40.71 1.82
847 882 4.720273 AGGTACTCCCTCCGTTTCATAATT 59.280 41.667 0.00 0.00 40.71 1.40
848 883 4.296056 AGGTACTCCCTCCGTTTCATAAT 58.704 43.478 0.00 0.00 40.71 1.28
849 884 3.716431 AGGTACTCCCTCCGTTTCATAA 58.284 45.455 0.00 0.00 40.71 1.90
850 885 3.393426 AGGTACTCCCTCCGTTTCATA 57.607 47.619 0.00 0.00 40.71 2.15
851 886 2.249309 AGGTACTCCCTCCGTTTCAT 57.751 50.000 0.00 0.00 40.71 2.57
852 887 2.309755 TCTAGGTACTCCCTCCGTTTCA 59.690 50.000 0.00 0.00 44.81 2.69
853 888 3.010200 TCTAGGTACTCCCTCCGTTTC 57.990 52.381 0.00 0.00 44.81 2.78
854 889 3.463048 TTCTAGGTACTCCCTCCGTTT 57.537 47.619 0.00 0.00 44.81 3.60
855 890 3.363627 CTTTCTAGGTACTCCCTCCGTT 58.636 50.000 0.00 0.00 44.81 4.44
866 901 8.632731 TCTGGGAAATTAATCCTTTCTAGGTA 57.367 34.615 0.00 0.00 42.60 3.08
867 902 7.525158 TCTGGGAAATTAATCCTTTCTAGGT 57.475 36.000 0.00 0.00 42.60 3.08
868 903 7.834181 TGTTCTGGGAAATTAATCCTTTCTAGG 59.166 37.037 0.00 0.00 43.46 3.02
869 904 8.807948 TGTTCTGGGAAATTAATCCTTTCTAG 57.192 34.615 0.00 0.00 39.57 2.43
886 921 5.590259 CACCATTTATAGTTCCTGTTCTGGG 59.410 44.000 0.00 0.00 0.00 4.45
903 938 6.321181 ACCTAATGCGATGTTAATCACCATTT 59.679 34.615 0.00 0.00 36.53 2.32
926 969 1.557443 GAGCACGTGCACTGTACACC 61.557 60.000 39.21 14.09 45.16 4.16
928 971 0.104120 AAGAGCACGTGCACTGTACA 59.896 50.000 39.21 0.00 41.01 2.90
931 974 0.939577 CGTAAGAGCACGTGCACTGT 60.940 55.000 39.21 27.71 41.01 3.55
1005 1050 1.463831 GAGAGAGTGTTGCAGTGCATG 59.536 52.381 20.50 0.00 38.76 4.06
1006 1051 1.805869 GAGAGAGTGTTGCAGTGCAT 58.194 50.000 20.50 3.05 38.76 3.96
1007 1052 0.598419 CGAGAGAGTGTTGCAGTGCA 60.598 55.000 15.37 15.37 36.47 4.57
1009 1054 0.598419 TGCGAGAGAGTGTTGCAGTG 60.598 55.000 0.00 0.00 0.00 3.66
1010 1055 0.598680 GTGCGAGAGAGTGTTGCAGT 60.599 55.000 0.00 0.00 36.03 4.40
1011 1056 0.319383 AGTGCGAGAGAGTGTTGCAG 60.319 55.000 0.00 0.00 36.03 4.41
1016 1061 1.164411 CAGAGAGTGCGAGAGAGTGT 58.836 55.000 0.00 0.00 0.00 3.55
1017 1062 0.451383 CCAGAGAGTGCGAGAGAGTG 59.549 60.000 0.00 0.00 0.00 3.51
1018 1063 0.037590 ACCAGAGAGTGCGAGAGAGT 59.962 55.000 0.00 0.00 0.00 3.24
1019 1064 0.451383 CACCAGAGAGTGCGAGAGAG 59.549 60.000 0.00 0.00 0.00 3.20
1020 1065 0.036875 TCACCAGAGAGTGCGAGAGA 59.963 55.000 0.00 0.00 37.68 3.10
1021 1066 1.102154 ATCACCAGAGAGTGCGAGAG 58.898 55.000 0.00 0.00 37.68 3.20
1022 1067 2.293170 CTATCACCAGAGAGTGCGAGA 58.707 52.381 0.00 0.00 37.68 4.04
1023 1068 2.020720 ACTATCACCAGAGAGTGCGAG 58.979 52.381 0.00 0.00 44.21 5.03
1024 1069 2.130272 ACTATCACCAGAGAGTGCGA 57.870 50.000 0.00 0.00 44.21 5.10
1025 1070 2.949451 AACTATCACCAGAGAGTGCG 57.051 50.000 0.00 0.00 45.09 5.34
1026 1071 6.697892 GTGTTATAACTATCACCAGAGAGTGC 59.302 42.308 16.33 0.00 45.09 4.40
1027 1072 6.913132 CGTGTTATAACTATCACCAGAGAGTG 59.087 42.308 16.33 0.00 45.09 3.51
1029 1074 7.028926 ACGTGTTATAACTATCACCAGAGAG 57.971 40.000 16.33 0.00 39.02 3.20
1035 1080 5.172053 GTGCGTACGTGTTATAACTATCACC 59.828 44.000 17.90 0.00 0.00 4.02
1042 1087 3.259430 CGTGTGCGTACGTGTTATAAC 57.741 47.619 17.90 8.75 39.13 1.89
1069 1114 2.306847 GTTTCCTTCACCATGGTGTGT 58.693 47.619 37.49 5.70 45.55 3.72
1108 1153 1.065926 GCAGACATGATGGTCACCTCA 60.066 52.381 0.00 0.00 40.29 3.86
1338 1410 1.895231 CAGTTGCACAGCAGCTCCA 60.895 57.895 5.36 0.00 46.49 3.86
1478 1550 9.636879 CAATGATGATCATAGTACTACCTGAAG 57.363 37.037 8.54 0.00 35.76 3.02
1545 2591 5.123344 GCTTATACCTGTTTTTCACGTGGAT 59.877 40.000 17.00 0.00 0.00 3.41
1750 3858 6.488006 AGAACATCATGGAGTATTATGGTTGC 59.512 38.462 0.00 0.00 0.00 4.17
1763 3871 6.384258 TTTTCGACAAAAGAACATCATGGA 57.616 33.333 0.00 0.00 0.00 3.41
1764 3872 6.400303 GCATTTTCGACAAAAGAACATCATGG 60.400 38.462 0.00 0.00 34.92 3.66
1765 3873 6.364165 AGCATTTTCGACAAAAGAACATCATG 59.636 34.615 0.00 0.00 34.92 3.07
1847 4116 0.684479 TCACCTGATCTCTGTCCGGG 60.684 60.000 0.00 0.00 0.00 5.73
1848 4117 0.457851 GTCACCTGATCTCTGTCCGG 59.542 60.000 0.00 0.00 0.00 5.14
1850 4119 2.741228 GCATGTCACCTGATCTCTGTCC 60.741 54.545 0.00 0.00 0.00 4.02
1851 4120 2.093816 TGCATGTCACCTGATCTCTGTC 60.094 50.000 0.00 0.00 0.00 3.51
1853 4122 2.277969 GTGCATGTCACCTGATCTCTG 58.722 52.381 8.54 0.00 39.79 3.35
1871 4140 2.034053 ACACGGTAACATGCAAAAGGTG 59.966 45.455 0.00 0.00 0.00 4.00
1872 4141 2.034053 CACACGGTAACATGCAAAAGGT 59.966 45.455 0.00 0.00 0.00 3.50
1873 4142 2.660490 CACACGGTAACATGCAAAAGG 58.340 47.619 0.00 0.00 0.00 3.11
1874 4143 2.050691 GCACACGGTAACATGCAAAAG 58.949 47.619 0.00 0.00 38.93 2.27
1875 4144 1.269309 GGCACACGGTAACATGCAAAA 60.269 47.619 0.00 0.00 40.39 2.44
1876 4145 0.312416 GGCACACGGTAACATGCAAA 59.688 50.000 0.00 0.00 40.39 3.68
1877 4146 0.536233 AGGCACACGGTAACATGCAA 60.536 50.000 0.00 0.00 40.39 4.08
1878 4147 0.536233 AAGGCACACGGTAACATGCA 60.536 50.000 0.00 0.00 40.39 3.96
1879 4148 0.109781 CAAGGCACACGGTAACATGC 60.110 55.000 0.00 0.00 38.50 4.06
1880 4149 0.109781 GCAAGGCACACGGTAACATG 60.110 55.000 0.00 0.00 0.00 3.21
1881 4150 1.573829 CGCAAGGCACACGGTAACAT 61.574 55.000 0.00 0.00 0.00 2.71
1882 4151 2.248135 CGCAAGGCACACGGTAACA 61.248 57.895 0.00 0.00 0.00 2.41
1883 4152 2.554272 CGCAAGGCACACGGTAAC 59.446 61.111 0.00 0.00 0.00 2.50
1884 4153 3.350612 GCGCAAGGCACACGGTAA 61.351 61.111 0.30 0.00 42.87 2.85
1894 4163 0.173255 ATTTGAATTCGGGCGCAAGG 59.827 50.000 10.83 0.00 38.28 3.61
1895 4164 1.994916 AATTTGAATTCGGGCGCAAG 58.005 45.000 10.83 1.50 43.44 4.01
1896 4165 2.447244 AAATTTGAATTCGGGCGCAA 57.553 40.000 10.83 0.00 0.00 4.85
1897 4166 3.577649 TTAAATTTGAATTCGGGCGCA 57.422 38.095 10.83 0.00 0.00 6.09
1898 4167 3.675698 TGTTTAAATTTGAATTCGGGCGC 59.324 39.130 0.00 0.00 0.00 6.53
1899 4168 6.239945 CAATGTTTAAATTTGAATTCGGGCG 58.760 36.000 0.00 0.00 0.00 6.13
1900 4169 6.020984 GCAATGTTTAAATTTGAATTCGGGC 58.979 36.000 14.55 0.00 0.00 6.13
1901 4170 6.090088 TCGCAATGTTTAAATTTGAATTCGGG 59.910 34.615 14.55 0.00 0.00 5.14
1902 4171 7.043454 TCGCAATGTTTAAATTTGAATTCGG 57.957 32.000 14.55 0.00 0.00 4.30
1903 4172 8.910599 TTTCGCAATGTTTAAATTTGAATTCG 57.089 26.923 14.55 9.81 0.00 3.34
1939 4208 3.991773 GTGCTGTGAACATGCATGATTTT 59.008 39.130 32.75 16.83 39.00 1.82
1942 4211 2.164338 TGTGCTGTGAACATGCATGAT 58.836 42.857 32.75 22.02 39.00 2.45
1943 4212 1.606903 TGTGCTGTGAACATGCATGA 58.393 45.000 32.75 8.19 39.00 3.07
1944 4213 2.647529 ATGTGCTGTGAACATGCATG 57.352 45.000 25.09 25.09 36.89 4.06
1948 4217 7.854422 GTCATCTTAATATGTGCTGTGAACATG 59.146 37.037 1.67 0.00 38.67 3.21
1951 4220 7.254590 GGAGTCATCTTAATATGTGCTGTGAAC 60.255 40.741 1.24 0.00 0.00 3.18
1954 4223 6.286758 AGGAGTCATCTTAATATGTGCTGTG 58.713 40.000 1.24 0.00 0.00 3.66
1955 4224 6.491714 AGGAGTCATCTTAATATGTGCTGT 57.508 37.500 1.24 0.00 0.00 4.40
1956 4225 8.893219 TTTAGGAGTCATCTTAATATGTGCTG 57.107 34.615 1.24 0.00 28.23 4.41
1957 4226 9.905713 TTTTTAGGAGTCATCTTAATATGTGCT 57.094 29.630 1.24 1.85 28.23 4.40
1980 4249 8.885494 TGTTTCGAATTTTGATCTGGATTTTT 57.115 26.923 0.00 0.00 0.00 1.94
1982 4251 9.573133 GTATGTTTCGAATTTTGATCTGGATTT 57.427 29.630 0.00 0.00 0.00 2.17
1983 4252 8.739039 TGTATGTTTCGAATTTTGATCTGGATT 58.261 29.630 0.00 0.00 0.00 3.01
1984 4253 8.279970 TGTATGTTTCGAATTTTGATCTGGAT 57.720 30.769 0.00 0.00 0.00 3.41
1985 4254 7.680442 TGTATGTTTCGAATTTTGATCTGGA 57.320 32.000 0.00 0.00 0.00 3.86
1986 4255 7.374228 CGATGTATGTTTCGAATTTTGATCTGG 59.626 37.037 0.00 0.00 37.55 3.86
1987 4256 8.116136 TCGATGTATGTTTCGAATTTTGATCTG 58.884 33.333 0.00 0.00 41.06 2.90
1988 4257 8.196802 TCGATGTATGTTTCGAATTTTGATCT 57.803 30.769 0.00 0.00 41.06 2.75
1989 4258 8.328146 TCTCGATGTATGTTTCGAATTTTGATC 58.672 33.333 0.00 0.00 43.14 2.92
1992 4261 7.045354 GCTTCTCGATGTATGTTTCGAATTTTG 60.045 37.037 0.00 0.00 43.14 2.44
1994 4263 6.092122 TGCTTCTCGATGTATGTTTCGAATTT 59.908 34.615 0.00 0.00 43.14 1.82
2025 4294 7.243487 TCGCAACTATTCATGACAGATTTTTC 58.757 34.615 9.90 0.00 0.00 2.29
2026 4295 7.144722 TCGCAACTATTCATGACAGATTTTT 57.855 32.000 9.90 0.00 0.00 1.94
2027 4296 6.741992 TCGCAACTATTCATGACAGATTTT 57.258 33.333 9.90 0.00 0.00 1.82
2032 4301 4.333649 ACCATTCGCAACTATTCATGACAG 59.666 41.667 0.00 0.00 0.00 3.51
2033 4302 4.260985 ACCATTCGCAACTATTCATGACA 58.739 39.130 0.00 0.00 0.00 3.58
2034 4303 4.882671 ACCATTCGCAACTATTCATGAC 57.117 40.909 0.00 0.00 0.00 3.06
2036 4305 5.295292 AGAGAACCATTCGCAACTATTCATG 59.705 40.000 0.00 0.00 34.02 3.07
2042 4375 3.244078 ACACAGAGAACCATTCGCAACTA 60.244 43.478 0.00 0.00 34.02 2.24
2048 4381 6.253727 GTGAATAGTACACAGAGAACCATTCG 59.746 42.308 0.00 0.00 38.05 3.34
2061 4402 9.291664 GACAGAGAAACTATGTGAATAGTACAC 57.708 37.037 3.80 0.00 35.98 2.90
2062 4403 8.467598 GGACAGAGAAACTATGTGAATAGTACA 58.532 37.037 3.80 0.00 35.98 2.90
2063 4404 7.921745 GGGACAGAGAAACTATGTGAATAGTAC 59.078 40.741 3.80 0.00 35.98 2.73
2064 4405 7.618117 TGGGACAGAGAAACTATGTGAATAGTA 59.382 37.037 3.80 0.00 35.98 1.82
2066 4407 6.878317 TGGGACAGAGAAACTATGTGAATAG 58.122 40.000 3.80 0.00 35.98 1.73
2067 4408 6.867519 TGGGACAGAGAAACTATGTGAATA 57.132 37.500 3.80 0.00 35.98 1.75
2068 4409 5.762179 TGGGACAGAGAAACTATGTGAAT 57.238 39.130 3.80 0.00 35.98 2.57
2085 4426 7.854557 ACGGAATTAGTAAAAGTTATGGGAC 57.145 36.000 0.00 0.00 0.00 4.46
2086 4427 7.148205 GCAACGGAATTAGTAAAAGTTATGGGA 60.148 37.037 0.00 0.00 0.00 4.37
2324 4676 1.514087 GTCGATCAGGGCGTTGGTA 59.486 57.895 0.00 0.00 0.00 3.25
2693 5207 2.428569 CACTGGTGGACGTCGTCG 60.429 66.667 18.61 7.41 43.34 5.12
3167 5701 5.670485 ACACACACACACATATATACCAGG 58.330 41.667 0.00 0.00 0.00 4.45
3179 5713 6.020995 GCAACAACTTTTATACACACACACAC 60.021 38.462 0.00 0.00 0.00 3.82
3184 5720 6.935741 AGAGCAACAACTTTTATACACACA 57.064 33.333 0.00 0.00 0.00 3.72
3191 6076 5.048013 GGCCTTGTAGAGCAACAACTTTTAT 60.048 40.000 0.00 0.00 35.56 1.40
3230 6115 6.366315 AGCAATCACACGTTTTTACACTAA 57.634 33.333 0.00 0.00 0.00 2.24
3286 6256 8.707796 ATGGAGCAAGTTAACTAGCTATAGTA 57.292 34.615 8.92 0.00 41.54 1.82
3345 6321 9.790344 CTCTGACCAAATCCTCTATTTTATCAT 57.210 33.333 0.00 0.00 35.54 2.45
3399 6375 3.904136 AAATGGTGAGCGAAAACAGAG 57.096 42.857 0.00 0.00 0.00 3.35
3453 6429 6.775594 TCACCCGATATTATAGACTGATGG 57.224 41.667 0.00 0.00 0.00 3.51
3655 6636 3.938963 GTCATCCACGCTAAATTCCTTGA 59.061 43.478 0.00 0.00 0.00 3.02
3809 7147 2.224549 CGTGTGAGTCTCGTCTCTTCTT 59.775 50.000 0.00 0.00 35.68 2.52
3834 7172 0.393808 GGTTATTCTTCCAGCCGGCA 60.394 55.000 31.54 4.59 0.00 5.69
3969 7329 2.755650 GGAGATCACAGTGACGTTGTT 58.244 47.619 5.05 0.00 0.00 2.83
4029 7391 3.369576 GCGGTATCTGAAAAAGAGGTCCT 60.370 47.826 0.00 0.00 38.67 3.85
4061 7424 2.158534 ACCACAGTATGCCAGAAACCAA 60.159 45.455 0.00 0.00 42.53 3.67
4112 7499 6.701145 TGGTTTTGAATACTTTGCTGTGTA 57.299 33.333 0.00 0.00 0.00 2.90
4166 7554 8.770438 ACAGCAAAGTTTTTCAATGTTTTCTA 57.230 26.923 0.00 0.00 0.00 2.10
4174 7562 5.445806 GCGTTTGACAGCAAAGTTTTTCAAT 60.446 36.000 0.00 0.00 44.12 2.57
4191 7583 0.463654 ACACTTCAGGCTGCGTTTGA 60.464 50.000 10.34 0.00 0.00 2.69
4204 7596 3.782889 AACAAAAGCAGGTGACACTTC 57.217 42.857 5.39 0.00 0.00 3.01
4207 7599 3.502191 TGAAACAAAAGCAGGTGACAC 57.498 42.857 0.00 0.00 0.00 3.67
4211 7603 2.545106 GCCAATGAAACAAAAGCAGGTG 59.455 45.455 0.00 0.00 0.00 4.00
4212 7604 2.435437 AGCCAATGAAACAAAAGCAGGT 59.565 40.909 0.00 0.00 0.00 4.00
4213 7605 3.116079 AGCCAATGAAACAAAAGCAGG 57.884 42.857 0.00 0.00 0.00 4.85
4214 7606 6.790285 AAATAGCCAATGAAACAAAAGCAG 57.210 33.333 0.00 0.00 0.00 4.24
4215 7607 6.873076 CCTAAATAGCCAATGAAACAAAAGCA 59.127 34.615 0.00 0.00 0.00 3.91
4216 7608 6.183360 GCCTAAATAGCCAATGAAACAAAAGC 60.183 38.462 0.00 0.00 0.00 3.51
4217 7609 7.294676 GCCTAAATAGCCAATGAAACAAAAG 57.705 36.000 0.00 0.00 0.00 2.27
4231 7623 2.298610 GTTGGAGGTGGCCTAAATAGC 58.701 52.381 3.32 0.00 31.76 2.97
4232 7624 2.561569 CGTTGGAGGTGGCCTAAATAG 58.438 52.381 3.32 0.00 31.76 1.73
4233 7625 1.210967 CCGTTGGAGGTGGCCTAAATA 59.789 52.381 3.32 0.00 31.76 1.40
4234 7626 0.034477 CCGTTGGAGGTGGCCTAAAT 60.034 55.000 3.32 0.00 31.76 1.40
4235 7627 1.377229 CCGTTGGAGGTGGCCTAAA 59.623 57.895 3.32 0.00 31.76 1.85
4236 7628 2.598787 CCCGTTGGAGGTGGCCTAA 61.599 63.158 3.32 0.00 31.76 2.69
4237 7629 3.006728 CCCGTTGGAGGTGGCCTA 61.007 66.667 3.32 0.00 31.76 3.93
4241 7633 3.316573 GAGAGCCCGTTGGAGGTGG 62.317 68.421 0.00 0.00 0.00 4.61
4242 7634 1.831652 AAGAGAGCCCGTTGGAGGTG 61.832 60.000 0.00 0.00 0.00 4.00
4243 7635 0.252103 TAAGAGAGCCCGTTGGAGGT 60.252 55.000 0.00 0.00 0.00 3.85
4244 7636 0.461961 CTAAGAGAGCCCGTTGGAGG 59.538 60.000 0.00 0.00 0.00 4.30
4245 7637 1.407258 CTCTAAGAGAGCCCGTTGGAG 59.593 57.143 0.00 0.00 35.30 3.86
4246 7638 1.475403 CTCTAAGAGAGCCCGTTGGA 58.525 55.000 0.00 0.00 35.30 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.