Multiple sequence alignment - TraesCS2D01G425000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G425000 chr2D 100.000 5628 0 0 1 5628 537463276 537457649 0.000000e+00 10394.0
1 TraesCS2D01G425000 chr2A 90.516 3722 245 67 766 4412 679996515 679992827 0.000000e+00 4819.0
2 TraesCS2D01G425000 chr2A 88.767 730 53 12 4517 5235 679992663 679991952 0.000000e+00 867.0
3 TraesCS2D01G425000 chr2A 91.525 236 18 2 28 263 679997019 679996786 1.960000e-84 324.0
4 TraesCS2D01G425000 chr2A 84.385 301 29 11 5323 5623 679991906 679991624 4.290000e-71 279.0
5 TraesCS2D01G425000 chr2A 81.250 176 27 5 333 506 17955336 17955165 2.730000e-28 137.0
6 TraesCS2D01G425000 chr2B 89.439 2102 117 29 1 2042 640112849 640110793 0.000000e+00 2555.0
7 TraesCS2D01G425000 chr2B 83.459 2116 224 71 2368 4412 640105630 640103570 0.000000e+00 1853.0
8 TraesCS2D01G425000 chr2B 91.554 592 28 11 4517 5100 640103409 640102832 0.000000e+00 797.0
9 TraesCS2D01G425000 chr2B 90.323 186 14 4 2188 2372 640110790 640110608 2.030000e-59 241.0
10 TraesCS2D01G425000 chr2B 83.399 253 21 11 5386 5627 640102750 640102508 1.230000e-51 215.0
11 TraesCS2D01G425000 chr2B 81.053 95 18 0 329 423 6196676 6196770 6.050000e-10 76.8
12 TraesCS2D01G425000 chr3A 83.893 745 87 19 1282 2001 707605401 707604665 0.000000e+00 680.0
13 TraesCS2D01G425000 chr3A 92.891 211 15 0 964 1174 707605611 707605401 1.970000e-79 307.0
14 TraesCS2D01G425000 chr3A 100.000 31 0 0 329 359 423857192 423857222 2.190000e-04 58.4
15 TraesCS2D01G425000 chr5B 79.971 679 76 29 1282 1918 641993690 641994350 4.000000e-121 446.0
16 TraesCS2D01G425000 chr5B 87.204 211 19 3 964 1174 641993488 641993690 3.390000e-57 233.0
17 TraesCS2D01G425000 chr6D 92.391 92 7 0 3341 3432 272108739 272108648 1.270000e-26 132.0
18 TraesCS2D01G425000 chr7B 91.304 92 8 0 3341 3432 438399534 438399443 5.920000e-25 126.0
19 TraesCS2D01G425000 chr6B 90.217 92 9 0 3341 3432 433271968 433271877 2.750000e-23 121.0
20 TraesCS2D01G425000 chr6A 90.217 92 9 0 3341 3432 388210122 388210031 2.750000e-23 121.0
21 TraesCS2D01G425000 chr6A 82.828 99 16 1 329 427 104356782 104356879 2.790000e-13 87.9
22 TraesCS2D01G425000 chr6A 82.828 99 16 1 329 427 104446806 104446709 2.790000e-13 87.9
23 TraesCS2D01G425000 chr4B 88.235 68 8 0 333 400 398567102 398567035 1.300000e-11 82.4
24 TraesCS2D01G425000 chrUn 80.000 95 13 5 372 463 12621591 12621682 1.310000e-06 65.8
25 TraesCS2D01G425000 chrUn 79.348 92 17 2 372 462 269204926 269204836 4.710000e-06 63.9
26 TraesCS2D01G425000 chrUn 79.348 92 17 2 372 462 295829030 295828940 4.710000e-06 63.9
27 TraesCS2D01G425000 chr7A 94.444 36 2 0 329 364 539439219 539439184 7.880000e-04 56.5
28 TraesCS2D01G425000 chr1A 94.444 36 2 0 329 364 480933519 480933484 7.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G425000 chr2D 537457649 537463276 5627 True 10394.00 10394 100.000000 1 5628 1 chr2D.!!$R1 5627
1 TraesCS2D01G425000 chr2A 679991624 679997019 5395 True 1572.25 4819 88.798250 28 5623 4 chr2A.!!$R2 5595
2 TraesCS2D01G425000 chr2B 640110608 640112849 2241 True 1398.00 2555 89.881000 1 2372 2 chr2B.!!$R2 2371
3 TraesCS2D01G425000 chr2B 640102508 640105630 3122 True 955.00 1853 86.137333 2368 5627 3 chr2B.!!$R1 3259
4 TraesCS2D01G425000 chr3A 707604665 707605611 946 True 493.50 680 88.392000 964 2001 2 chr3A.!!$R1 1037
5 TraesCS2D01G425000 chr5B 641993488 641994350 862 False 339.50 446 83.587500 964 1918 2 chr5B.!!$F1 954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 584 3.303229 GCTTTGCCAATTTATCGTTTCCG 59.697 43.478 0.00 0.0 0.00 4.30 F
1179 1281 2.646175 CGAGAAGGAGGTGCCGGAA 61.646 63.158 5.05 0.0 43.43 4.30 F
2098 2263 0.968405 TTTGGATTCCAAGCACTGGC 59.032 50.000 17.29 0.0 44.84 4.85 F
3515 3720 0.396435 TCTTCTGCAATCACCCGTGT 59.604 50.000 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1883 0.319900 TGCAGAGAACAGGCTTCGAC 60.320 55.0 0.00 0.00 0.0 4.20 R
2844 3015 0.681243 GATCAGAAGTGGGTTGGGGC 60.681 60.0 0.00 0.00 0.0 5.80 R
3959 4190 0.107081 TTCTCCTTTTGTTCGCCGGA 59.893 50.0 5.05 0.00 0.0 5.14 R
5285 5628 0.029433 GAAGGCGGCCGATCAAATTC 59.971 55.0 33.48 17.67 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 4.839668 AATTAGCCGTGTTAAACTGCAA 57.160 36.364 0.00 0.00 41.17 4.08
250 251 5.745770 GCCCCTTTGATTCAAAAGAACCATT 60.746 40.000 12.62 0.00 39.12 3.16
251 252 6.519891 GCCCCTTTGATTCAAAAGAACCATTA 60.520 38.462 12.62 0.00 39.12 1.90
252 253 7.449247 CCCCTTTGATTCAAAAGAACCATTAA 58.551 34.615 12.62 0.00 39.12 1.40
253 254 7.603784 CCCCTTTGATTCAAAAGAACCATTAAG 59.396 37.037 12.62 0.00 39.12 1.85
254 255 8.367156 CCCTTTGATTCAAAAGAACCATTAAGA 58.633 33.333 12.62 0.00 39.12 2.10
255 256 9.933723 CCTTTGATTCAAAAGAACCATTAAGAT 57.066 29.630 12.62 0.00 39.12 2.40
323 324 9.893634 TTCCTATCGAAATATTTTGTGTAAGGA 57.106 29.630 13.94 16.08 0.00 3.36
343 408 6.179906 AGGATCCTATGACAAATCGAATGT 57.820 37.500 14.27 6.90 0.00 2.71
467 532 4.252878 CAAACTAAAATTGCCATCACCCC 58.747 43.478 0.00 0.00 0.00 4.95
474 539 3.616343 ATTGCCATCACCCCATCAATA 57.384 42.857 0.00 0.00 0.00 1.90
478 543 5.273833 TGCCATCACCCCATCAATATAAT 57.726 39.130 0.00 0.00 0.00 1.28
519 584 3.303229 GCTTTGCCAATTTATCGTTTCCG 59.697 43.478 0.00 0.00 0.00 4.30
528 593 7.201291 GCCAATTTATCGTTTCCGTTTTCTTAC 60.201 37.037 0.00 0.00 35.01 2.34
534 599 6.939551 TCGTTTCCGTTTTCTTACATAGAG 57.060 37.500 0.00 0.00 32.75 2.43
537 602 7.538678 TCGTTTCCGTTTTCTTACATAGAGTAC 59.461 37.037 0.00 0.00 32.75 2.73
882 964 4.410400 CCTCGCCCGCTTTCCCTT 62.410 66.667 0.00 0.00 0.00 3.95
999 1098 4.596585 ACCAACCCCCACCAAGCG 62.597 66.667 0.00 0.00 0.00 4.68
1179 1281 2.646175 CGAGAAGGAGGTGCCGGAA 61.646 63.158 5.05 0.00 43.43 4.30
1612 1728 6.513393 GCTTTGAATTAGGATGTAATGTCCCG 60.513 42.308 0.00 0.00 36.36 5.14
1638 1754 2.896044 TGGACATTGTAATGCCTTGCAA 59.104 40.909 7.61 7.61 43.62 4.08
1653 1769 4.389687 GCCTTGCAATTTTTAGGATGTGTG 59.610 41.667 0.00 0.00 0.00 3.82
1745 1883 1.136141 GTGCAAACTGTCAGCAGATCG 60.136 52.381 7.27 0.00 45.28 3.69
1803 1941 7.771183 AGTCTAGACTCTTCACATTTCTGATC 58.229 38.462 20.00 0.00 36.92 2.92
1834 1972 5.983720 ACCTATTTTATCTTCATCGTGTCCG 59.016 40.000 0.00 0.00 0.00 4.79
2065 2230 3.564511 CTGAATTAGGGTTGTGTTTGCG 58.435 45.455 0.00 0.00 0.00 4.85
2070 2235 1.372872 GGGTTGTGTTTGCGCCATC 60.373 57.895 4.18 0.00 0.00 3.51
2083 2248 4.044336 TGCGCCATCTTATCATTTTTGG 57.956 40.909 4.18 0.00 0.00 3.28
2098 2263 0.968405 TTTGGATTCCAAGCACTGGC 59.032 50.000 17.29 0.00 44.84 4.85
2121 2286 6.309494 GGCCCGTTAATCATTTACTTTTGTTC 59.691 38.462 0.00 0.00 0.00 3.18
2260 2425 2.489938 TTCTTCATCCCAAGAACCCG 57.510 50.000 0.00 0.00 37.45 5.28
2418 2583 7.405292 TCCAAGGTCATCATCTAATTTTCTGT 58.595 34.615 0.00 0.00 0.00 3.41
2425 2590 7.695618 GTCATCATCTAATTTTCTGTCTGCAAC 59.304 37.037 0.00 0.00 0.00 4.17
2558 2724 9.383519 TCTATTGGAACTCAGCAAAATTACTAG 57.616 33.333 0.00 0.00 0.00 2.57
2664 2834 8.154203 TGTTCTTCATTGTTAGGAACTGTGATA 58.846 33.333 0.00 0.00 41.52 2.15
2802 2973 7.809331 GTGAAGCATTTTCATTCTGTATGTCAA 59.191 33.333 0.00 0.00 35.64 3.18
2813 2984 6.413783 TTCTGTATGTCAACACTTCCTACA 57.586 37.500 0.00 0.00 0.00 2.74
2814 2985 5.779922 TCTGTATGTCAACACTTCCTACAC 58.220 41.667 0.00 0.00 0.00 2.90
2830 3001 6.061022 TCCTACACCTTTCAAATCTATGCA 57.939 37.500 0.00 0.00 0.00 3.96
2833 3004 5.841957 ACACCTTTCAAATCTATGCATCC 57.158 39.130 0.19 0.00 0.00 3.51
2840 3011 7.664731 CCTTTCAAATCTATGCATCCTACTCAT 59.335 37.037 0.19 0.00 0.00 2.90
2850 3021 3.257627 CCTACTCATAGGGCCCCAA 57.742 57.895 21.43 7.74 44.06 4.12
2863 3034 0.681243 GCCCCAACCCACTTCTGATC 60.681 60.000 0.00 0.00 0.00 2.92
2868 3039 4.386761 CCCCAACCCACTTCTGATCATATT 60.387 45.833 0.00 0.00 0.00 1.28
2896 3067 2.130193 TCATGCTATCTGGGCTCCTTT 58.870 47.619 0.00 0.00 0.00 3.11
2993 3164 6.071616 ACACATGCTTAATAAATCAAACGGGT 60.072 34.615 0.00 0.00 0.00 5.28
3011 3182 3.980775 CGGGTTGTTTTTGACTTGCTATG 59.019 43.478 0.00 0.00 0.00 2.23
3061 3232 5.477291 CAGAGAGAAACACCTTACAGTCCTA 59.523 44.000 0.00 0.00 0.00 2.94
3067 3238 7.612677 AGAAACACCTTACAGTCCTATAGTTG 58.387 38.462 0.00 0.00 0.00 3.16
3071 3242 4.781087 ACCTTACAGTCCTATAGTTGGCAA 59.219 41.667 0.00 0.00 0.00 4.52
3095 3274 6.174720 TCCAACCTATTAGGCATAAGACAG 57.825 41.667 9.77 0.00 39.63 3.51
3104 3295 2.026822 AGGCATAAGACAGACCACCTTG 60.027 50.000 0.00 0.00 0.00 3.61
3105 3296 2.027192 GGCATAAGACAGACCACCTTGA 60.027 50.000 0.00 0.00 0.00 3.02
3106 3297 3.370953 GGCATAAGACAGACCACCTTGAT 60.371 47.826 0.00 0.00 0.00 2.57
3107 3298 3.873952 GCATAAGACAGACCACCTTGATC 59.126 47.826 0.00 0.00 0.00 2.92
3108 3299 4.383552 GCATAAGACAGACCACCTTGATCT 60.384 45.833 0.00 0.00 0.00 2.75
3109 3300 5.738909 CATAAGACAGACCACCTTGATCTT 58.261 41.667 0.00 0.00 0.00 2.40
3116 3307 5.222007 ACAGACCACCTTGATCTTCTTGAAT 60.222 40.000 0.00 0.00 0.00 2.57
3126 3317 7.866393 CCTTGATCTTCTTGAATCCATATTTGC 59.134 37.037 0.00 0.00 0.00 3.68
3127 3318 7.885009 TGATCTTCTTGAATCCATATTTGCA 57.115 32.000 0.00 0.00 0.00 4.08
3150 3349 3.788333 ATTGTGTATGTGATTGCTGGC 57.212 42.857 0.00 0.00 0.00 4.85
3153 3352 2.488937 TGTGTATGTGATTGCTGGCTTG 59.511 45.455 0.00 0.00 0.00 4.01
3154 3353 2.749076 GTGTATGTGATTGCTGGCTTGA 59.251 45.455 0.00 0.00 0.00 3.02
3155 3354 3.379372 GTGTATGTGATTGCTGGCTTGAT 59.621 43.478 0.00 0.00 0.00 2.57
3157 3356 4.818005 TGTATGTGATTGCTGGCTTGATAG 59.182 41.667 0.00 0.00 0.00 2.08
3167 3366 1.141657 TGGCTTGATAGGAGTGATGCC 59.858 52.381 0.00 0.00 39.53 4.40
3174 3373 5.233083 TGATAGGAGTGATGCCTTAATGG 57.767 43.478 0.00 0.00 36.96 3.16
3227 3426 7.012799 CCTTGGGAAGAATTAGAATAGCAGAAC 59.987 40.741 0.00 0.00 0.00 3.01
3236 3435 7.667575 ATTAGAATAGCAGAACCTGAAGAGA 57.332 36.000 0.00 0.00 32.44 3.10
3241 3442 1.270518 GCAGAACCTGAAGAGAGTGCA 60.271 52.381 0.00 0.00 32.44 4.57
3256 3457 8.737168 AAGAGAGTGCATGCTAATTAATGTTA 57.263 30.769 20.33 0.00 0.00 2.41
3264 3467 9.474920 TGCATGCTAATTAATGTTAATTTAGGC 57.525 29.630 20.33 14.82 41.91 3.93
3277 3480 6.204688 TGTTAATTTAGGCACTCTTGACAGTG 59.795 38.462 0.00 0.00 45.82 3.66
3278 3481 4.623932 ATTTAGGCACTCTTGACAGTGA 57.376 40.909 4.77 0.00 45.92 3.41
3279 3482 4.623932 TTTAGGCACTCTTGACAGTGAT 57.376 40.909 4.77 0.00 45.92 3.06
3286 3489 4.387256 GCACTCTTGACAGTGATACACTTC 59.613 45.833 4.77 4.90 45.92 3.01
3293 3496 3.866651 ACAGTGATACACTTCAGATGGC 58.133 45.455 0.00 0.00 42.59 4.40
3296 3499 3.195610 AGTGATACACTTCAGATGGCGAA 59.804 43.478 0.00 0.00 42.59 4.70
3372 3577 8.655970 GTTCAAAAACAAGCTTGTGATAAGTTT 58.344 29.630 31.73 22.57 41.31 2.66
3500 3705 8.954950 TGTAGAGAATTTGATGGATCTTCTTC 57.045 34.615 0.00 0.00 0.00 2.87
3502 3707 9.044150 GTAGAGAATTTGATGGATCTTCTTCTG 57.956 37.037 0.00 0.00 0.00 3.02
3503 3708 6.543100 AGAGAATTTGATGGATCTTCTTCTGC 59.457 38.462 0.00 0.00 0.00 4.26
3504 3709 6.185511 AGAATTTGATGGATCTTCTTCTGCA 58.814 36.000 0.00 0.00 0.00 4.41
3506 3711 7.342284 AGAATTTGATGGATCTTCTTCTGCAAT 59.658 33.333 0.00 0.00 0.00 3.56
3507 3712 6.446781 TTTGATGGATCTTCTTCTGCAATC 57.553 37.500 0.00 0.00 0.00 2.67
3508 3713 5.106876 TGATGGATCTTCTTCTGCAATCA 57.893 39.130 0.00 0.00 0.00 2.57
3509 3714 4.880120 TGATGGATCTTCTTCTGCAATCAC 59.120 41.667 0.00 0.00 0.00 3.06
3511 3716 2.948315 GGATCTTCTTCTGCAATCACCC 59.052 50.000 0.00 0.00 0.00 4.61
3512 3717 2.099141 TCTTCTTCTGCAATCACCCG 57.901 50.000 0.00 0.00 0.00 5.28
3513 3718 1.347707 TCTTCTTCTGCAATCACCCGT 59.652 47.619 0.00 0.00 0.00 5.28
3514 3719 1.466167 CTTCTTCTGCAATCACCCGTG 59.534 52.381 0.00 0.00 0.00 4.94
3515 3720 0.396435 TCTTCTGCAATCACCCGTGT 59.604 50.000 0.00 0.00 0.00 4.49
3518 3723 2.552599 TCTGCAATCACCCGTGTTTA 57.447 45.000 0.00 0.00 0.00 2.01
3531 3742 8.031848 TCACCCGTGTTTATTACAAAAGTATC 57.968 34.615 0.00 0.00 38.80 2.24
3533 3744 9.153721 CACCCGTGTTTATTACAAAAGTATCTA 57.846 33.333 0.00 0.00 38.80 1.98
3552 3763 8.861086 AGTATCTATCGTTTGATGACTTGGTAT 58.139 33.333 1.36 0.00 35.99 2.73
3569 3780 6.831868 ACTTGGTATGAACACCTACAGTTTTT 59.168 34.615 0.00 0.00 39.50 1.94
3571 3782 5.766174 TGGTATGAACACCTACAGTTTTTCC 59.234 40.000 0.00 0.00 39.50 3.13
3572 3783 6.002082 GGTATGAACACCTACAGTTTTTCCT 58.998 40.000 0.00 0.00 35.55 3.36
3573 3784 6.072673 GGTATGAACACCTACAGTTTTTCCTG 60.073 42.308 0.00 0.00 35.76 3.86
3574 3785 4.850680 TGAACACCTACAGTTTTTCCTGT 58.149 39.130 0.00 0.00 46.94 4.00
3578 3789 7.393796 TGAACACCTACAGTTTTTCCTGTAAAA 59.606 33.333 3.01 0.00 44.88 1.52
3579 3790 7.706100 ACACCTACAGTTTTTCCTGTAAAAA 57.294 32.000 3.01 0.00 44.88 1.94
3623 3834 5.795972 TGACTTTGTGATTGTATCGGGTAA 58.204 37.500 0.00 0.00 0.00 2.85
3639 3850 4.414182 TCGGGTAATTGGTAATCCTGGAAT 59.586 41.667 0.00 0.00 34.23 3.01
3646 3857 9.136323 GTAATTGGTAATCCTGGAATTGAGATT 57.864 33.333 0.00 1.13 33.66 2.40
3656 3867 8.243961 TCCTGGAATTGAGATTTTGTTTGTTA 57.756 30.769 0.00 0.00 0.00 2.41
3658 3869 9.143631 CCTGGAATTGAGATTTTGTTTGTTATC 57.856 33.333 0.00 0.00 0.00 1.75
3659 3870 9.695526 CTGGAATTGAGATTTTGTTTGTTATCA 57.304 29.630 0.00 0.00 0.00 2.15
3662 3873 8.538409 AATTGAGATTTTGTTTGTTATCAGCC 57.462 30.769 0.00 0.00 0.00 4.85
3663 3874 6.024552 TGAGATTTTGTTTGTTATCAGCCC 57.975 37.500 0.00 0.00 0.00 5.19
3685 3896 5.128335 CCCGGTAGACTCTTGGTAAACTATT 59.872 44.000 0.00 0.00 0.00 1.73
3687 3898 7.147846 CCCGGTAGACTCTTGGTAAACTATTAA 60.148 40.741 0.00 0.00 0.00 1.40
3690 3901 9.043079 GGTAGACTCTTGGTAAACTATTAATGC 57.957 37.037 0.00 0.00 0.00 3.56
3693 3904 9.167311 AGACTCTTGGTAAACTATTAATGCTTG 57.833 33.333 0.00 0.00 0.00 4.01
3694 3905 9.162764 GACTCTTGGTAAACTATTAATGCTTGA 57.837 33.333 0.00 0.00 0.00 3.02
3696 3907 9.994432 CTCTTGGTAAACTATTAATGCTTGAAG 57.006 33.333 0.00 0.00 0.00 3.02
3704 3921 6.485171 ACTATTAATGCTTGAAGGTTCCAGT 58.515 36.000 0.00 0.00 0.00 4.00
3721 3938 5.738619 TCCAGTGCTCATAGTTTGTCTTA 57.261 39.130 0.00 0.00 0.00 2.10
3723 3940 5.011635 TCCAGTGCTCATAGTTTGTCTTACA 59.988 40.000 0.00 0.00 0.00 2.41
3732 3949 4.228912 AGTTTGTCTTACAATGCAGCAC 57.771 40.909 0.00 0.00 38.00 4.40
3810 4027 3.817647 ACCAAGACATGCTTCTGAACTTC 59.182 43.478 0.00 0.00 33.60 3.01
3827 4045 2.233186 ACTTCGCTACAGGTAAACTCCC 59.767 50.000 0.00 0.00 0.00 4.30
3830 4048 3.907221 TCGCTACAGGTAAACTCCCTAT 58.093 45.455 0.00 0.00 0.00 2.57
3837 4055 4.850386 ACAGGTAAACTCCCTATTCCTTGT 59.150 41.667 0.00 0.00 0.00 3.16
3852 4070 8.636213 CCTATTCCTTGTATGATGAGCAAAAAT 58.364 33.333 0.00 0.00 0.00 1.82
3853 4071 9.459640 CTATTCCTTGTATGATGAGCAAAAATG 57.540 33.333 0.00 0.00 0.00 2.32
3855 4073 5.951148 TCCTTGTATGATGAGCAAAAATGGA 59.049 36.000 0.00 0.00 0.00 3.41
3856 4074 6.095860 TCCTTGTATGATGAGCAAAAATGGAG 59.904 38.462 0.00 0.00 0.00 3.86
3857 4075 6.127535 CCTTGTATGATGAGCAAAAATGGAGT 60.128 38.462 0.00 0.00 0.00 3.85
3858 4076 6.198650 TGTATGATGAGCAAAAATGGAGTG 57.801 37.500 0.00 0.00 0.00 3.51
3859 4077 5.711506 TGTATGATGAGCAAAAATGGAGTGT 59.288 36.000 0.00 0.00 0.00 3.55
3861 4090 7.557358 TGTATGATGAGCAAAAATGGAGTGTAT 59.443 33.333 0.00 0.00 0.00 2.29
3866 4095 5.125417 TGAGCAAAAATGGAGTGTATTAGCC 59.875 40.000 0.00 0.00 0.00 3.93
3871 4100 3.845781 ATGGAGTGTATTAGCCTGGTG 57.154 47.619 0.00 0.00 0.00 4.17
3885 4114 2.743928 GGTGCGCTGGTTCCTGAG 60.744 66.667 9.73 0.00 0.00 3.35
3894 4125 2.165437 GCTGGTTCCTGAGTCACTCTAG 59.835 54.545 6.33 1.99 0.00 2.43
3903 4134 4.956700 CCTGAGTCACTCTAGTTGGGATAA 59.043 45.833 6.33 0.00 0.00 1.75
3904 4135 5.068460 CCTGAGTCACTCTAGTTGGGATAAG 59.932 48.000 6.33 0.00 0.00 1.73
3907 4138 6.153000 TGAGTCACTCTAGTTGGGATAAGTTC 59.847 42.308 6.33 0.00 0.00 3.01
3914 4145 7.074653 TCTAGTTGGGATAAGTTCAACTTGT 57.925 36.000 13.39 6.09 45.89 3.16
3926 4157 4.288626 AGTTCAACTTGTAGGGCTCCATAA 59.711 41.667 0.00 0.00 0.00 1.90
3927 4158 4.216411 TCAACTTGTAGGGCTCCATAAC 57.784 45.455 0.00 0.00 0.00 1.89
3935 4166 2.279173 AGGGCTCCATAACTTTGGACT 58.721 47.619 0.00 0.00 40.90 3.85
3938 4169 3.193479 GGGCTCCATAACTTTGGACTTTG 59.807 47.826 0.00 0.00 40.90 2.77
3946 4177 3.953542 ACTTTGGACTTTGTTCCTCCT 57.046 42.857 0.00 0.00 36.51 3.69
3970 4201 5.686159 TTTTAAATTAGTCCGGCGAACAA 57.314 34.783 9.30 0.00 0.00 2.83
3973 4204 3.824414 AATTAGTCCGGCGAACAAAAG 57.176 42.857 9.30 0.00 0.00 2.27
3976 4220 0.602905 AGTCCGGCGAACAAAAGGAG 60.603 55.000 9.30 0.00 0.00 3.69
3980 4224 1.334689 CCGGCGAACAAAAGGAGAAAC 60.335 52.381 9.30 0.00 0.00 2.78
3996 4240 4.633565 GGAGAAACTGCTCTGAATTGTAGG 59.366 45.833 0.00 0.00 35.26 3.18
4008 4252 7.175347 TCTGAATTGTAGGCCTATAGCTATG 57.825 40.000 17.38 5.40 43.05 2.23
4078 4322 4.442706 CGGTTCTGTAATTCCTGCATACT 58.557 43.478 0.00 0.00 0.00 2.12
4201 4445 4.457810 CAAGCTTACGTGAACACAATCAG 58.542 43.478 0.00 0.00 0.00 2.90
4207 4451 2.872245 ACGTGAACACAATCAGAAGTGG 59.128 45.455 10.23 0.00 39.99 4.00
4210 4454 4.150627 CGTGAACACAATCAGAAGTGGTAG 59.849 45.833 10.23 0.00 35.45 3.18
4218 4462 3.667497 TCAGAAGTGGTAGTCTTGCTG 57.333 47.619 0.00 0.00 0.00 4.41
4220 4464 1.071605 GAAGTGGTAGTCTTGCTGCG 58.928 55.000 0.00 0.00 0.00 5.18
4223 4467 0.602905 GTGGTAGTCTTGCTGCGGTT 60.603 55.000 0.00 0.00 0.00 4.44
4239 4483 3.929610 TGCGGTTTCTTTCTTTGGTTTTG 59.070 39.130 0.00 0.00 0.00 2.44
4243 4487 6.477360 GCGGTTTCTTTCTTTGGTTTTGATAA 59.523 34.615 0.00 0.00 0.00 1.75
4253 4498 9.541143 TTCTTTGGTTTTGATAAATGTTTCCTC 57.459 29.630 0.00 0.00 0.00 3.71
4261 4506 8.477419 TTTGATAAATGTTTCCTCTGAAGGTT 57.523 30.769 0.00 0.00 43.82 3.50
4309 4554 0.397816 AGACTGGGGGAAGGATCGAG 60.398 60.000 0.00 0.00 0.00 4.04
4318 4563 4.011698 GGGGAAGGATCGAGAGTATACTC 58.988 52.174 22.97 22.97 43.17 2.59
4342 4587 0.109086 CTCTACCACTCACTGCACGG 60.109 60.000 0.00 0.00 0.00 4.94
4368 4613 6.069905 TGGGAGTATGACCATGTAAGCTAAAA 60.070 38.462 0.00 0.00 0.00 1.52
4369 4614 6.998673 GGGAGTATGACCATGTAAGCTAAAAT 59.001 38.462 0.00 0.00 0.00 1.82
4376 4621 6.152661 TGACCATGTAAGCTAAAATTTCCCTG 59.847 38.462 0.00 0.00 0.00 4.45
4380 4625 7.877612 CCATGTAAGCTAAAATTTCCCTGTTTT 59.122 33.333 0.00 0.00 0.00 2.43
4382 4627 8.245195 TGTAAGCTAAAATTTCCCTGTTTTCT 57.755 30.769 0.00 0.00 0.00 2.52
4384 4629 9.542462 GTAAGCTAAAATTTCCCTGTTTTCTTT 57.458 29.630 0.00 0.00 0.00 2.52
4386 4631 8.662781 AGCTAAAATTTCCCTGTTTTCTTTTC 57.337 30.769 0.00 0.00 0.00 2.29
4387 4632 7.715249 AGCTAAAATTTCCCTGTTTTCTTTTCC 59.285 33.333 0.00 0.00 0.00 3.13
4388 4633 7.497579 GCTAAAATTTCCCTGTTTTCTTTTCCA 59.502 33.333 0.00 0.00 0.00 3.53
4404 4649 8.635765 TTCTTTTCCACTTACAAGCTCAATAT 57.364 30.769 0.00 0.00 0.00 1.28
4412 4657 7.307632 CCACTTACAAGCTCAATATGTAGCATC 60.308 40.741 11.09 0.00 41.32 3.91
4413 4658 7.225341 CACTTACAAGCTCAATATGTAGCATCA 59.775 37.037 11.09 0.00 41.32 3.07
4416 4661 7.395190 ACAAGCTCAATATGTAGCATCAAAA 57.605 32.000 11.09 0.00 41.32 2.44
4417 4662 7.253422 ACAAGCTCAATATGTAGCATCAAAAC 58.747 34.615 11.09 0.00 41.32 2.43
4418 4663 7.121759 ACAAGCTCAATATGTAGCATCAAAACT 59.878 33.333 11.09 0.00 41.32 2.66
4419 4664 7.024340 AGCTCAATATGTAGCATCAAAACTG 57.976 36.000 11.09 0.00 41.32 3.16
4420 4665 6.600822 AGCTCAATATGTAGCATCAAAACTGT 59.399 34.615 11.09 0.00 41.32 3.55
4421 4666 7.121759 AGCTCAATATGTAGCATCAAAACTGTT 59.878 33.333 11.09 0.00 41.32 3.16
4422 4667 7.756722 GCTCAATATGTAGCATCAAAACTGTTT 59.243 33.333 0.00 0.00 38.63 2.83
4423 4668 9.282247 CTCAATATGTAGCATCAAAACTGTTTC 57.718 33.333 6.20 0.00 0.00 2.78
4425 4670 9.577110 CAATATGTAGCATCAAAACTGTTTCAT 57.423 29.630 6.20 5.79 0.00 2.57
4429 4674 8.715191 TGTAGCATCAAAACTGTTTCATTTTT 57.285 26.923 6.20 0.00 28.74 1.94
4458 4703 3.818387 TCTGCGTTAGAACAGTAGAACG 58.182 45.455 9.21 9.21 45.62 3.95
4461 4706 4.362279 TGCGTTAGAACAGTAGAACGTTT 58.638 39.130 0.46 0.00 44.87 3.60
4462 4707 4.207635 TGCGTTAGAACAGTAGAACGTTTG 59.792 41.667 0.46 0.00 44.87 2.93
4463 4708 4.207841 GCGTTAGAACAGTAGAACGTTTGT 59.792 41.667 0.46 0.00 44.87 2.83
4464 4709 5.276536 GCGTTAGAACAGTAGAACGTTTGTT 60.277 40.000 14.24 14.24 44.87 2.83
4465 4710 6.699063 CGTTAGAACAGTAGAACGTTTGTTT 58.301 36.000 15.19 9.27 38.78 2.83
4466 4711 7.175410 CGTTAGAACAGTAGAACGTTTGTTTT 58.825 34.615 15.19 12.65 38.78 2.43
4467 4712 7.369026 CGTTAGAACAGTAGAACGTTTGTTTTC 59.631 37.037 15.19 6.12 38.78 2.29
4468 4713 6.730960 AGAACAGTAGAACGTTTGTTTTCA 57.269 33.333 15.19 0.00 38.78 2.69
4469 4714 6.772078 AGAACAGTAGAACGTTTGTTTTCAG 58.228 36.000 15.19 0.00 38.78 3.02
4470 4715 6.592607 AGAACAGTAGAACGTTTGTTTTCAGA 59.407 34.615 15.19 0.00 38.78 3.27
4471 4716 6.920569 ACAGTAGAACGTTTGTTTTCAGAT 57.079 33.333 0.46 0.00 38.78 2.90
4472 4717 8.428186 AACAGTAGAACGTTTGTTTTCAGATA 57.572 30.769 9.68 0.00 38.78 1.98
4473 4718 8.073355 ACAGTAGAACGTTTGTTTTCAGATAG 57.927 34.615 0.46 0.00 38.78 2.08
4479 4724 8.709646 AGAACGTTTGTTTTCAGATAGTGATAC 58.290 33.333 0.46 0.00 38.78 2.24
4501 4746 8.902540 ATACTGTACTGTCTGAATTGTTGAAA 57.097 30.769 8.85 0.00 0.00 2.69
4523 4848 8.809066 TGAAATTTCAATCATTGATCTCAAGGT 58.191 29.630 18.45 0.00 39.84 3.50
4552 4878 3.440173 AGTTGGCTAACATGTCATTTCGG 59.560 43.478 15.86 0.00 39.30 4.30
4612 4938 2.398036 GACGCGTGCATAAACCCG 59.602 61.111 20.70 0.00 0.00 5.28
4704 5032 0.394762 TTGAGATGCCTGGCCATGTC 60.395 55.000 17.53 16.60 36.39 3.06
4710 5038 1.578897 TGCCTGGCCATGTCTAGTTA 58.421 50.000 17.53 0.00 0.00 2.24
4773 5104 5.697633 GTGTAACGGTTTAGTTCCATCAAGA 59.302 40.000 0.00 0.00 35.70 3.02
4801 5132 3.073062 ACCTGCTGTACATGTTTCCTTCT 59.927 43.478 2.30 0.00 0.00 2.85
4827 5158 3.680490 TGAATGAAGGATAAACCGTGCA 58.320 40.909 0.00 0.00 44.74 4.57
4832 5163 2.561478 AGGATAAACCGTGCAGTTGT 57.439 45.000 0.00 0.00 44.74 3.32
4884 5223 2.254152 TGGCTCTCCAACATACTCCT 57.746 50.000 0.00 0.00 39.99 3.69
4887 5226 3.301274 GGCTCTCCAACATACTCCTACT 58.699 50.000 0.00 0.00 0.00 2.57
4891 5230 5.451242 GCTCTCCAACATACTCCTACTTCTG 60.451 48.000 0.00 0.00 0.00 3.02
4925 5264 7.964604 TTACTAGAGCTTTTCTTCAACCTTC 57.035 36.000 0.00 0.00 37.36 3.46
4935 5274 4.229304 TCTTCAACCTTCTGTCCAAACA 57.771 40.909 0.00 0.00 0.00 2.83
5021 5360 5.189180 GGATAATCTGGAAAGCTCACAAGT 58.811 41.667 0.00 0.00 0.00 3.16
5022 5361 5.295540 GGATAATCTGGAAAGCTCACAAGTC 59.704 44.000 0.00 0.00 0.00 3.01
5023 5362 3.777106 ATCTGGAAAGCTCACAAGTCA 57.223 42.857 0.00 0.00 0.00 3.41
5024 5363 2.838736 TCTGGAAAGCTCACAAGTCAC 58.161 47.619 0.00 0.00 0.00 3.67
5025 5364 2.170397 TCTGGAAAGCTCACAAGTCACA 59.830 45.455 0.00 0.00 0.00 3.58
5026 5365 2.945008 CTGGAAAGCTCACAAGTCACAA 59.055 45.455 0.00 0.00 0.00 3.33
5027 5366 2.945008 TGGAAAGCTCACAAGTCACAAG 59.055 45.455 0.00 0.00 0.00 3.16
5101 5444 1.583986 GAGCTGTGACGAGCAGAGT 59.416 57.895 0.00 0.00 41.83 3.24
5103 5446 0.523966 AGCTGTGACGAGCAGAGTAC 59.476 55.000 9.11 0.00 41.83 2.73
5110 5453 1.241990 ACGAGCAGAGTACAGCCGAA 61.242 55.000 16.29 0.00 0.00 4.30
5116 5459 2.544685 CAGAGTACAGCCGAATGAAGG 58.455 52.381 0.00 0.00 0.00 3.46
5142 5485 3.002965 CCCACAAACGTGAAAGTCTTACC 59.997 47.826 0.00 0.00 36.43 2.85
5157 5500 2.846206 TCTTACCAGGTCCATCAGCATT 59.154 45.455 0.00 0.00 0.00 3.56
5159 5502 0.033796 ACCAGGTCCATCAGCATTGG 60.034 55.000 0.00 0.00 35.45 3.16
5217 5560 2.312390 GACTCCCTACTCCTCATCCAC 58.688 57.143 0.00 0.00 0.00 4.02
5227 5570 4.469657 ACTCCTCATCCACTAGATCAGTC 58.530 47.826 0.00 0.00 34.26 3.51
5235 5578 3.267031 TCCACTAGATCAGTCTCCAGTCA 59.733 47.826 0.00 0.00 34.26 3.41
5237 5580 4.037803 CCACTAGATCAGTCTCCAGTCATG 59.962 50.000 0.00 0.00 34.26 3.07
5240 5583 2.431419 AGATCAGTCTCCAGTCATGCAG 59.569 50.000 0.00 0.00 0.00 4.41
5241 5584 1.637338 TCAGTCTCCAGTCATGCAGT 58.363 50.000 0.00 0.00 0.00 4.40
5242 5585 2.807676 TCAGTCTCCAGTCATGCAGTA 58.192 47.619 0.00 0.00 0.00 2.74
5243 5586 2.757314 TCAGTCTCCAGTCATGCAGTAG 59.243 50.000 0.00 0.00 0.00 2.57
5244 5587 2.757314 CAGTCTCCAGTCATGCAGTAGA 59.243 50.000 0.00 0.00 0.00 2.59
5245 5588 3.194329 CAGTCTCCAGTCATGCAGTAGAA 59.806 47.826 0.00 0.00 0.00 2.10
5246 5589 4.029520 AGTCTCCAGTCATGCAGTAGAAT 58.970 43.478 0.00 0.00 0.00 2.40
5247 5590 4.469227 AGTCTCCAGTCATGCAGTAGAATT 59.531 41.667 0.00 0.00 0.00 2.17
5249 5592 5.982516 GTCTCCAGTCATGCAGTAGAATTAG 59.017 44.000 0.00 0.00 0.00 1.73
5250 5593 5.069648 TCTCCAGTCATGCAGTAGAATTAGG 59.930 44.000 0.00 0.00 0.00 2.69
5251 5594 4.716784 TCCAGTCATGCAGTAGAATTAGGT 59.283 41.667 0.00 0.00 0.00 3.08
5252 5595 5.189736 TCCAGTCATGCAGTAGAATTAGGTT 59.810 40.000 0.00 0.00 0.00 3.50
5253 5596 6.382859 TCCAGTCATGCAGTAGAATTAGGTTA 59.617 38.462 0.00 0.00 0.00 2.85
5254 5597 6.703607 CCAGTCATGCAGTAGAATTAGGTTAG 59.296 42.308 0.00 0.00 0.00 2.34
5255 5598 7.417911 CCAGTCATGCAGTAGAATTAGGTTAGA 60.418 40.741 0.00 0.00 0.00 2.10
5256 5599 8.147058 CAGTCATGCAGTAGAATTAGGTTAGAT 58.853 37.037 0.00 0.00 0.00 1.98
5257 5600 9.368416 AGTCATGCAGTAGAATTAGGTTAGATA 57.632 33.333 0.00 0.00 0.00 1.98
5259 5602 9.982651 TCATGCAGTAGAATTAGGTTAGATAAC 57.017 33.333 0.00 0.00 35.50 1.89
5260 5603 8.916654 CATGCAGTAGAATTAGGTTAGATAACG 58.083 37.037 0.00 0.00 37.07 3.18
5261 5604 6.921857 TGCAGTAGAATTAGGTTAGATAACGC 59.078 38.462 0.00 0.00 37.07 4.84
5262 5605 7.146648 GCAGTAGAATTAGGTTAGATAACGCT 58.853 38.462 0.00 0.00 37.07 5.07
5263 5606 8.295288 GCAGTAGAATTAGGTTAGATAACGCTA 58.705 37.037 0.00 0.00 37.07 4.26
5278 5621 2.278596 CTATGCGTCGACCGGGTG 60.279 66.667 10.58 0.00 36.94 4.61
5280 5623 2.071844 CTATGCGTCGACCGGGTGAT 62.072 60.000 10.58 0.00 36.94 3.06
5281 5624 2.344521 TATGCGTCGACCGGGTGATG 62.345 60.000 10.58 9.82 36.94 3.07
5282 5625 4.430765 GCGTCGACCGGGTGATGT 62.431 66.667 10.58 0.00 36.94 3.06
5283 5626 2.260434 CGTCGACCGGGTGATGTT 59.740 61.111 10.58 0.00 0.00 2.71
5284 5627 1.373748 CGTCGACCGGGTGATGTTT 60.374 57.895 10.58 0.00 0.00 2.83
5285 5628 1.623081 CGTCGACCGGGTGATGTTTG 61.623 60.000 10.58 0.00 0.00 2.93
5286 5629 0.320073 GTCGACCGGGTGATGTTTGA 60.320 55.000 3.30 0.00 0.00 2.69
5287 5630 0.393448 TCGACCGGGTGATGTTTGAA 59.607 50.000 3.30 0.00 0.00 2.69
5288 5631 1.002659 TCGACCGGGTGATGTTTGAAT 59.997 47.619 3.30 0.00 0.00 2.57
5289 5632 1.810151 CGACCGGGTGATGTTTGAATT 59.190 47.619 3.30 0.00 0.00 2.17
5290 5633 2.227865 CGACCGGGTGATGTTTGAATTT 59.772 45.455 3.30 0.00 0.00 1.82
5291 5634 3.574614 GACCGGGTGATGTTTGAATTTG 58.425 45.455 3.30 0.00 0.00 2.32
5292 5635 3.226777 ACCGGGTGATGTTTGAATTTGA 58.773 40.909 6.32 0.00 0.00 2.69
5293 5636 3.831911 ACCGGGTGATGTTTGAATTTGAT 59.168 39.130 6.32 0.00 0.00 2.57
5294 5637 4.082245 ACCGGGTGATGTTTGAATTTGATC 60.082 41.667 6.32 0.00 0.00 2.92
5295 5638 4.097714 CGGGTGATGTTTGAATTTGATCG 58.902 43.478 0.00 0.00 0.00 3.69
5296 5639 4.423732 GGGTGATGTTTGAATTTGATCGG 58.576 43.478 0.00 0.00 0.00 4.18
5297 5640 3.859386 GGTGATGTTTGAATTTGATCGGC 59.141 43.478 0.00 0.00 0.00 5.54
5298 5641 3.859386 GTGATGTTTGAATTTGATCGGCC 59.141 43.478 0.00 0.00 0.00 6.13
5299 5642 2.627863 TGTTTGAATTTGATCGGCCG 57.372 45.000 22.12 22.12 0.00 6.13
5300 5643 1.268265 GTTTGAATTTGATCGGCCGC 58.732 50.000 23.51 8.29 0.00 6.53
5301 5644 0.172352 TTTGAATTTGATCGGCCGCC 59.828 50.000 23.51 15.56 0.00 6.13
5302 5645 0.679640 TTGAATTTGATCGGCCGCCT 60.680 50.000 23.51 10.55 0.00 5.52
5303 5646 0.679640 TGAATTTGATCGGCCGCCTT 60.680 50.000 23.51 7.66 0.00 4.35
5304 5647 0.029433 GAATTTGATCGGCCGCCTTC 59.971 55.000 23.51 17.39 0.00 3.46
5305 5648 0.679640 AATTTGATCGGCCGCCTTCA 60.680 50.000 23.51 19.89 0.00 3.02
5306 5649 1.376609 ATTTGATCGGCCGCCTTCAC 61.377 55.000 23.51 8.12 0.00 3.18
5307 5650 3.969250 TTGATCGGCCGCCTTCACC 62.969 63.158 23.51 0.00 0.00 4.02
5314 5657 2.499205 CCGCCTTCACCGCAGATA 59.501 61.111 0.00 0.00 0.00 1.98
5315 5658 1.592669 CCGCCTTCACCGCAGATAG 60.593 63.158 0.00 0.00 0.00 2.08
5316 5659 1.437573 CGCCTTCACCGCAGATAGA 59.562 57.895 0.00 0.00 0.00 1.98
5317 5660 0.179111 CGCCTTCACCGCAGATAGAA 60.179 55.000 0.00 0.00 0.00 2.10
5318 5661 1.291132 GCCTTCACCGCAGATAGAAC 58.709 55.000 0.00 0.00 0.00 3.01
5319 5662 1.405526 GCCTTCACCGCAGATAGAACA 60.406 52.381 0.00 0.00 0.00 3.18
5320 5663 2.743183 GCCTTCACCGCAGATAGAACAT 60.743 50.000 0.00 0.00 0.00 2.71
5321 5664 2.868583 CCTTCACCGCAGATAGAACATG 59.131 50.000 0.00 0.00 0.00 3.21
5325 5668 1.202580 ACCGCAGATAGAACATGAGCC 60.203 52.381 0.00 0.00 0.00 4.70
5328 5671 1.863454 GCAGATAGAACATGAGCCGTG 59.137 52.381 0.00 0.00 0.00 4.94
5342 5685 1.593787 CCGTGTGATCTCCACTGCT 59.406 57.895 12.30 0.00 45.86 4.24
5344 5687 1.609061 CCGTGTGATCTCCACTGCTTT 60.609 52.381 12.30 0.00 45.86 3.51
5348 5691 4.393062 CGTGTGATCTCCACTGCTTTAATT 59.607 41.667 12.30 0.00 45.86 1.40
5382 5725 0.387239 GTTTGGAACATGAGCCGTGC 60.387 55.000 0.00 0.00 39.30 5.34
5418 5763 5.397142 AAAAATGCAATCCCAACTCTCTC 57.603 39.130 0.00 0.00 0.00 3.20
5419 5764 4.313020 AAATGCAATCCCAACTCTCTCT 57.687 40.909 0.00 0.00 0.00 3.10
5460 5805 5.476091 AACTGAACCCAACTCTCTCTAAG 57.524 43.478 0.00 0.00 0.00 2.18
5468 5813 4.282195 CCCAACTCTCTCTAAGTCACAACT 59.718 45.833 0.00 0.00 37.32 3.16
5470 5815 5.242838 CCAACTCTCTCTAAGTCACAACTCT 59.757 44.000 0.00 0.00 33.48 3.24
5471 5816 5.957842 ACTCTCTCTAAGTCACAACTCTG 57.042 43.478 0.00 0.00 33.48 3.35
5472 5817 5.381757 ACTCTCTCTAAGTCACAACTCTGT 58.618 41.667 0.00 0.00 33.48 3.41
5487 5842 3.158676 ACTCTGTTGTACCCACTCTCTC 58.841 50.000 0.00 0.00 0.00 3.20
5488 5843 3.181427 ACTCTGTTGTACCCACTCTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
5489 5844 3.157881 TCTGTTGTACCCACTCTCTCTG 58.842 50.000 0.00 0.00 0.00 3.35
5502 5857 1.105457 CTCTCTGACCCTCTCTGCAG 58.895 60.000 7.63 7.63 0.00 4.41
5504 5859 1.203112 TCTCTGACCCTCTCTGCAGTT 60.203 52.381 14.67 0.00 0.00 3.16
5514 5869 3.365265 CTGCAGTTTGGCGACCCC 61.365 66.667 5.25 0.00 36.28 4.95
5515 5870 3.850098 CTGCAGTTTGGCGACCCCT 62.850 63.158 5.25 0.00 36.28 4.79
5536 5892 1.066143 CCTTACCCACACGCTCTGATT 60.066 52.381 0.00 0.00 0.00 2.57
5543 5899 0.388649 ACACGCTCTGATTGGTCGAC 60.389 55.000 7.13 7.13 0.00 4.20
5550 5906 2.181021 GATTGGTCGACCGACGCT 59.819 61.111 27.04 11.61 45.41 5.07
5567 5923 1.383523 GCTGAGCACCTCCCAATAAC 58.616 55.000 0.00 0.00 0.00 1.89
5574 5930 3.322254 AGCACCTCCCAATAACTATCTCG 59.678 47.826 0.00 0.00 0.00 4.04
5607 5963 0.476771 AGGGGAGGCGTGAAGAAAAA 59.523 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.776173 TTGTACAACGAATGTTTGGGATT 57.224 34.783 3.59 0.00 43.63 3.01
117 118 3.686016 ACATGAAAACTAGGCGGTTCAT 58.314 40.909 0.00 1.02 40.47 2.57
264 265 9.981460 ACAAGGAATAAGAATCTTAATGGTTCT 57.019 29.630 6.82 0.00 33.86 3.01
266 267 8.971073 CCACAAGGAATAAGAATCTTAATGGTT 58.029 33.333 6.82 0.00 36.89 3.67
267 268 8.336235 TCCACAAGGAATAAGAATCTTAATGGT 58.664 33.333 6.82 0.00 42.23 3.55
268 269 8.752005 TCCACAAGGAATAAGAATCTTAATGG 57.248 34.615 6.82 6.70 42.23 3.16
312 313 7.279981 CGATTTGTCATAGGATCCTTACACAAA 59.720 37.037 28.99 28.99 37.03 2.83
313 314 6.761242 CGATTTGTCATAGGATCCTTACACAA 59.239 38.462 22.03 20.92 0.00 3.33
314 315 6.097696 TCGATTTGTCATAGGATCCTTACACA 59.902 38.462 22.03 16.41 0.00 3.72
315 316 6.513180 TCGATTTGTCATAGGATCCTTACAC 58.487 40.000 22.03 13.97 0.00 2.90
316 317 6.724893 TCGATTTGTCATAGGATCCTTACA 57.275 37.500 22.03 18.44 0.00 2.41
317 318 7.657761 ACATTCGATTTGTCATAGGATCCTTAC 59.342 37.037 22.03 16.07 0.00 2.34
318 319 7.735917 ACATTCGATTTGTCATAGGATCCTTA 58.264 34.615 22.03 6.48 0.00 2.69
319 320 6.595682 ACATTCGATTTGTCATAGGATCCTT 58.404 36.000 22.03 5.03 0.00 3.36
320 321 6.179906 ACATTCGATTTGTCATAGGATCCT 57.820 37.500 20.48 20.48 0.00 3.24
321 322 6.867662 AACATTCGATTTGTCATAGGATCC 57.132 37.500 2.48 2.48 0.00 3.36
322 323 9.226345 GAAAAACATTCGATTTGTCATAGGATC 57.774 33.333 2.38 0.00 0.00 3.36
323 324 8.739039 TGAAAAACATTCGATTTGTCATAGGAT 58.261 29.630 0.00 0.00 30.01 3.24
324 325 8.105097 TGAAAAACATTCGATTTGTCATAGGA 57.895 30.769 0.00 0.00 30.01 2.94
325 326 8.800972 CATGAAAAACATTCGATTTGTCATAGG 58.199 33.333 12.95 2.37 40.50 2.57
326 327 8.800972 CCATGAAAAACATTCGATTTGTCATAG 58.199 33.333 12.95 5.23 40.50 2.23
343 408 9.645059 TTGTCGAATATAATTTGCCATGAAAAA 57.355 25.926 0.00 0.00 0.00 1.94
459 524 6.014413 TGGCAAATTATATTGATGGGGTGATG 60.014 38.462 0.00 0.00 31.84 3.07
496 561 4.494484 GGAAACGATAAATTGGCAAAGCT 58.506 39.130 3.01 0.00 0.00 3.74
519 584 7.884816 TGCACAGTACTCTATGTAAGAAAAC 57.115 36.000 0.00 0.00 32.46 2.43
567 632 9.739276 TCCAGAATGTAAACTCAAATGTATCTT 57.261 29.630 0.00 0.00 0.00 2.40
568 633 9.911788 ATCCAGAATGTAAACTCAAATGTATCT 57.088 29.630 0.00 0.00 0.00 1.98
882 964 0.104672 TGGTGGGAGGAGTCAAAGGA 60.105 55.000 0.00 0.00 0.00 3.36
999 1098 0.753479 TGAGGAGAGAGGACGCCATC 60.753 60.000 0.00 0.00 32.29 3.51
1422 1524 1.153706 CATGACCCCGTACACGACC 60.154 63.158 2.76 0.00 43.02 4.79
1612 1728 4.535526 AGGCATTACAATGTCCAAAACC 57.464 40.909 13.98 2.79 41.85 3.27
1638 1754 6.207417 CACTTCTGGTCACACATCCTAAAAAT 59.793 38.462 0.00 0.00 0.00 1.82
1653 1769 5.067283 ACCACAAATAAACACACTTCTGGTC 59.933 40.000 0.00 0.00 0.00 4.02
1745 1883 0.319900 TGCAGAGAACAGGCTTCGAC 60.320 55.000 0.00 0.00 0.00 4.20
1803 1941 9.712305 ACGATGAAGATAAAATAGGTTCATAGG 57.288 33.333 0.00 0.00 37.84 2.57
1827 1965 1.710013 ATTTGAGTGCTACGGACACG 58.290 50.000 0.00 0.00 42.94 4.49
1861 2017 2.159653 CCGCACACAAGATTAACTCTGC 60.160 50.000 0.00 0.00 33.29 4.26
2024 2182 1.583054 GGTACCTCTGCCTAAATGCG 58.417 55.000 4.06 0.00 0.00 4.73
2055 2220 2.816672 TGATAAGATGGCGCAAACACAA 59.183 40.909 10.83 0.00 0.00 3.33
2063 2228 4.305989 TCCAAAAATGATAAGATGGCGC 57.694 40.909 0.00 0.00 0.00 6.53
2065 2230 6.819284 TGGAATCCAAAAATGATAAGATGGC 58.181 36.000 0.00 0.00 0.00 4.40
2070 2235 7.277098 CAGTGCTTGGAATCCAAAAATGATAAG 59.723 37.037 16.30 1.87 43.44 1.73
2098 2263 9.550811 GTAGAACAAAAGTAAATGATTAACGGG 57.449 33.333 0.00 0.00 0.00 5.28
2260 2425 3.808726 TGAAATGCAATGTTGGAGCAAAC 59.191 39.130 0.00 0.00 42.15 2.93
2418 2583 6.000840 TGGTGTACATATCAAAAGTTGCAGA 58.999 36.000 0.00 0.00 0.00 4.26
2425 2590 8.044060 ACATGAACTGGTGTACATATCAAAAG 57.956 34.615 0.00 0.00 30.46 2.27
2518 2684 3.394606 TCCAATAGAGGTATTTGGGGAGC 59.605 47.826 0.00 0.00 0.00 4.70
2802 2973 5.941788 AGATTTGAAAGGTGTAGGAAGTGT 58.058 37.500 0.00 0.00 0.00 3.55
2813 2984 6.904626 AGTAGGATGCATAGATTTGAAAGGT 58.095 36.000 0.00 0.00 0.00 3.50
2814 2985 6.994496 TGAGTAGGATGCATAGATTTGAAAGG 59.006 38.462 0.00 0.00 0.00 3.11
2833 3004 0.765510 GGTTGGGGCCCTATGAGTAG 59.234 60.000 25.93 0.00 0.00 2.57
2844 3015 0.681243 GATCAGAAGTGGGTTGGGGC 60.681 60.000 0.00 0.00 0.00 5.80
2845 3016 0.698238 TGATCAGAAGTGGGTTGGGG 59.302 55.000 0.00 0.00 0.00 4.96
2850 3021 9.830186 ATACTACTAATATGATCAGAAGTGGGT 57.170 33.333 9.48 8.30 0.00 4.51
2868 3039 5.832221 AGCCCAGATAGCATGATACTACTA 58.168 41.667 0.00 0.00 0.00 1.82
2955 3126 4.771114 AGCATGTGTAATACAGGGCTTA 57.229 40.909 7.34 0.00 45.86 3.09
2956 3127 3.652057 AGCATGTGTAATACAGGGCTT 57.348 42.857 7.34 0.00 45.86 4.35
2958 3129 7.504924 TTATTAAGCATGTGTAATACAGGGC 57.495 36.000 0.00 0.00 43.80 5.19
2989 3160 2.577449 AGCAAGTCAAAAACAACCCG 57.423 45.000 0.00 0.00 0.00 5.28
3027 3198 5.540337 AGGTGTTTCTCTCTGTGAGTGAATA 59.460 40.000 11.26 4.01 40.32 1.75
3030 3201 3.300388 AGGTGTTTCTCTCTGTGAGTGA 58.700 45.455 6.63 0.00 43.13 3.41
3031 3202 3.742433 AGGTGTTTCTCTCTGTGAGTG 57.258 47.619 6.63 0.00 43.13 3.51
3032 3203 4.649674 TGTAAGGTGTTTCTCTCTGTGAGT 59.350 41.667 6.63 0.00 43.13 3.41
3033 3204 5.201713 TGTAAGGTGTTTCTCTCTGTGAG 57.798 43.478 0.37 0.37 43.96 3.51
3034 3205 4.649674 ACTGTAAGGTGTTTCTCTCTGTGA 59.350 41.667 0.00 0.00 39.30 3.58
3039 3210 4.875561 AGGACTGTAAGGTGTTTCTCTC 57.124 45.455 0.00 0.00 39.30 3.20
3042 3213 7.310485 CCAACTATAGGACTGTAAGGTGTTTCT 60.310 40.741 4.43 0.00 39.30 2.52
3067 3238 2.944129 TGCCTAATAGGTTGGATTGCC 58.056 47.619 8.28 0.00 37.80 4.52
3071 3242 6.558775 TCTGTCTTATGCCTAATAGGTTGGAT 59.441 38.462 8.28 0.00 37.80 3.41
3079 3258 5.216622 AGGTGGTCTGTCTTATGCCTAATA 58.783 41.667 0.00 0.00 0.00 0.98
3083 3262 1.958288 AGGTGGTCTGTCTTATGCCT 58.042 50.000 0.00 0.00 0.00 4.75
3085 3264 3.334583 TCAAGGTGGTCTGTCTTATGC 57.665 47.619 0.00 0.00 0.00 3.14
3095 3274 4.637977 GGATTCAAGAAGATCAAGGTGGTC 59.362 45.833 0.00 0.00 0.00 4.02
3104 3295 7.709947 TGTGCAAATATGGATTCAAGAAGATC 58.290 34.615 0.00 0.00 0.00 2.75
3105 3296 7.649533 TGTGCAAATATGGATTCAAGAAGAT 57.350 32.000 0.00 0.00 0.00 2.40
3106 3297 7.465353 TTGTGCAAATATGGATTCAAGAAGA 57.535 32.000 0.00 0.00 0.00 2.87
3107 3298 8.600625 CAATTGTGCAAATATGGATTCAAGAAG 58.399 33.333 0.00 0.00 0.00 2.85
3108 3299 8.095792 ACAATTGTGCAAATATGGATTCAAGAA 58.904 29.630 11.07 0.00 0.00 2.52
3109 3300 7.546316 CACAATTGTGCAAATATGGATTCAAGA 59.454 33.333 24.69 0.00 39.39 3.02
3127 3318 4.618927 GCCAGCAATCACATACACAATTGT 60.619 41.667 4.92 4.92 40.02 2.71
3135 3326 4.214971 CCTATCAAGCCAGCAATCACATAC 59.785 45.833 0.00 0.00 0.00 2.39
3136 3327 4.102996 TCCTATCAAGCCAGCAATCACATA 59.897 41.667 0.00 0.00 0.00 2.29
3139 3330 2.877168 CTCCTATCAAGCCAGCAATCAC 59.123 50.000 0.00 0.00 0.00 3.06
3142 3333 2.507058 TCACTCCTATCAAGCCAGCAAT 59.493 45.455 0.00 0.00 0.00 3.56
3150 3349 5.704515 CCATTAAGGCATCACTCCTATCAAG 59.295 44.000 0.00 0.00 32.65 3.02
3153 3352 4.583871 CCCATTAAGGCATCACTCCTATC 58.416 47.826 0.00 0.00 35.39 2.08
3154 3353 4.647564 CCCATTAAGGCATCACTCCTAT 57.352 45.455 0.00 0.00 35.39 2.57
3167 3366 7.572523 TCATACAAGATTCTTGCCCATTAAG 57.427 36.000 23.22 7.77 0.00 1.85
3174 3373 6.199937 ACAACATCATACAAGATTCTTGCC 57.800 37.500 23.22 0.00 0.00 4.52
3181 3380 7.122650 CCCAAGGTTAACAACATCATACAAGAT 59.877 37.037 8.10 0.00 0.00 2.40
3186 3385 6.657541 TCTTCCCAAGGTTAACAACATCATAC 59.342 38.462 8.10 0.00 0.00 2.39
3227 3426 2.975732 TAGCATGCACTCTCTTCAGG 57.024 50.000 21.98 0.00 0.00 3.86
3256 3457 4.973168 TCACTGTCAAGAGTGCCTAAATT 58.027 39.130 2.57 0.00 42.74 1.82
3261 3464 2.899900 TGTATCACTGTCAAGAGTGCCT 59.100 45.455 2.57 0.00 42.74 4.75
3264 3467 5.532557 TGAAGTGTATCACTGTCAAGAGTG 58.467 41.667 3.12 1.04 44.62 3.51
3266 3469 6.018589 TCTGAAGTGTATCACTGTCAAGAG 57.981 41.667 3.12 0.69 44.62 2.85
3277 3480 2.866762 GGTTCGCCATCTGAAGTGTATC 59.133 50.000 0.00 0.00 37.19 2.24
3278 3481 2.501723 AGGTTCGCCATCTGAAGTGTAT 59.498 45.455 0.00 0.00 40.60 2.29
3279 3482 1.899814 AGGTTCGCCATCTGAAGTGTA 59.100 47.619 0.00 0.00 40.60 2.90
3286 3489 0.603707 ACACACAGGTTCGCCATCTG 60.604 55.000 0.00 0.00 40.60 2.90
3293 3496 5.175859 AGTTATATTCCACACACAGGTTCG 58.824 41.667 0.00 0.00 0.00 3.95
3296 3499 5.755409 TGAGTTATATTCCACACACAGGT 57.245 39.130 0.00 0.00 0.00 4.00
3331 3534 1.808411 TGAACCTGAAATCAGACGGC 58.192 50.000 11.94 0.00 46.59 5.68
3333 3536 5.577835 TGTTTTTGAACCTGAAATCAGACG 58.422 37.500 11.94 0.00 46.59 4.18
3372 3577 6.780031 TGAATCTTGGGTAAAAACTTGGATCA 59.220 34.615 0.00 0.00 0.00 2.92
3476 3681 9.044150 CAGAAGAAGATCCATCAAATTCTCTAC 57.956 37.037 0.00 0.00 30.16 2.59
3494 3699 1.466167 CACGGGTGATTGCAGAAGAAG 59.534 52.381 0.00 0.00 0.00 2.85
3498 3703 1.686355 AAACACGGGTGATTGCAGAA 58.314 45.000 5.71 0.00 0.00 3.02
3500 3705 3.848272 AATAAACACGGGTGATTGCAG 57.152 42.857 5.71 0.00 0.00 4.41
3502 3707 4.688511 TGTAATAAACACGGGTGATTGC 57.311 40.909 5.71 7.45 31.43 3.56
3503 3708 7.142680 ACTTTTGTAATAAACACGGGTGATTG 58.857 34.615 5.71 0.00 38.00 2.67
3504 3709 7.279750 ACTTTTGTAATAAACACGGGTGATT 57.720 32.000 5.71 0.00 38.00 2.57
3506 3711 7.879160 AGATACTTTTGTAATAAACACGGGTGA 59.121 33.333 5.71 0.00 38.00 4.02
3507 3712 8.036273 AGATACTTTTGTAATAAACACGGGTG 57.964 34.615 0.00 0.00 38.00 4.61
3508 3713 9.895138 ATAGATACTTTTGTAATAAACACGGGT 57.105 29.630 0.00 0.00 38.00 5.28
3531 3742 7.277760 TGTTCATACCAAGTCATCAAACGATAG 59.722 37.037 0.00 0.00 46.19 2.08
3533 3744 5.937540 TGTTCATACCAAGTCATCAAACGAT 59.062 36.000 0.00 0.00 0.00 3.73
3535 3746 5.382303 GTGTTCATACCAAGTCATCAAACG 58.618 41.667 0.00 0.00 0.00 3.60
3537 3748 5.630121 AGGTGTTCATACCAAGTCATCAAA 58.370 37.500 0.00 0.00 43.37 2.69
3602 3813 6.094881 CCAATTACCCGATACAATCACAAAGT 59.905 38.462 0.00 0.00 0.00 2.66
3603 3814 6.094881 ACCAATTACCCGATACAATCACAAAG 59.905 38.462 0.00 0.00 0.00 2.77
3604 3815 5.946972 ACCAATTACCCGATACAATCACAAA 59.053 36.000 0.00 0.00 0.00 2.83
3605 3816 5.502079 ACCAATTACCCGATACAATCACAA 58.498 37.500 0.00 0.00 0.00 3.33
3609 3820 7.119262 CAGGATTACCAATTACCCGATACAATC 59.881 40.741 0.00 0.00 38.94 2.67
3616 3827 3.386063 TCCAGGATTACCAATTACCCGA 58.614 45.455 0.00 0.00 38.94 5.14
3617 3828 3.849563 TCCAGGATTACCAATTACCCG 57.150 47.619 0.00 0.00 38.94 5.28
3623 3834 8.480501 CAAAATCTCAATTCCAGGATTACCAAT 58.519 33.333 0.00 0.00 38.94 3.16
3639 3850 6.454795 GGGCTGATAACAAACAAAATCTCAA 58.545 36.000 0.00 0.00 0.00 3.02
3646 3857 2.588620 ACCGGGCTGATAACAAACAAA 58.411 42.857 6.32 0.00 0.00 2.83
3656 3867 1.115467 CAAGAGTCTACCGGGCTGAT 58.885 55.000 6.32 0.00 0.00 2.90
3658 3869 1.258445 ACCAAGAGTCTACCGGGCTG 61.258 60.000 6.32 0.00 0.00 4.85
3659 3870 0.333993 TACCAAGAGTCTACCGGGCT 59.666 55.000 6.32 0.00 0.00 5.19
3662 3873 5.848833 ATAGTTTACCAAGAGTCTACCGG 57.151 43.478 0.00 0.00 0.00 5.28
3663 3874 9.245962 CATTAATAGTTTACCAAGAGTCTACCG 57.754 37.037 0.00 0.00 0.00 4.02
3685 3896 2.819608 GCACTGGAACCTTCAAGCATTA 59.180 45.455 0.00 0.00 31.11 1.90
3687 3898 1.202976 AGCACTGGAACCTTCAAGCAT 60.203 47.619 0.00 0.00 31.11 3.79
3690 3901 2.260844 TGAGCACTGGAACCTTCAAG 57.739 50.000 0.00 0.00 34.31 3.02
3693 3904 3.618690 ACTATGAGCACTGGAACCTTC 57.381 47.619 0.00 0.00 0.00 3.46
3694 3905 4.074970 CAAACTATGAGCACTGGAACCTT 58.925 43.478 0.00 0.00 0.00 3.50
3696 3907 3.412386 ACAAACTATGAGCACTGGAACC 58.588 45.455 0.00 0.00 0.00 3.62
3704 3921 5.704978 TGCATTGTAAGACAAACTATGAGCA 59.295 36.000 0.00 0.00 41.96 4.26
3721 3938 1.739466 CTCATTACGGTGCTGCATTGT 59.261 47.619 5.27 10.22 0.00 2.71
3723 3940 2.093500 TCTCTCATTACGGTGCTGCATT 60.093 45.455 5.27 0.00 0.00 3.56
3732 3949 0.527817 GCCCACGTCTCTCATTACGG 60.528 60.000 0.00 0.00 43.25 4.02
3780 3997 5.587443 CAGAAGCATGTCTTGGTCATAATCA 59.413 40.000 7.05 0.00 34.16 2.57
3810 4027 4.501058 GGAATAGGGAGTTTACCTGTAGCG 60.501 50.000 0.00 0.00 39.12 4.26
3827 4045 9.459640 CATTTTTGCTCATCATACAAGGAATAG 57.540 33.333 0.00 0.00 0.00 1.73
3830 4048 6.436847 TCCATTTTTGCTCATCATACAAGGAA 59.563 34.615 0.00 0.00 0.00 3.36
3837 4055 8.523915 AATACACTCCATTTTTGCTCATCATA 57.476 30.769 0.00 0.00 0.00 2.15
3852 4070 1.209504 GCACCAGGCTAATACACTCCA 59.790 52.381 0.00 0.00 40.25 3.86
3853 4071 1.806623 CGCACCAGGCTAATACACTCC 60.807 57.143 0.00 0.00 41.67 3.85
3855 4073 0.462047 GCGCACCAGGCTAATACACT 60.462 55.000 0.30 0.00 41.67 3.55
3856 4074 0.462047 AGCGCACCAGGCTAATACAC 60.462 55.000 11.47 0.00 39.39 2.90
3857 4075 0.461870 CAGCGCACCAGGCTAATACA 60.462 55.000 11.47 0.00 39.08 2.29
3858 4076 1.160329 CCAGCGCACCAGGCTAATAC 61.160 60.000 11.47 0.00 39.08 1.89
3859 4077 1.146041 CCAGCGCACCAGGCTAATA 59.854 57.895 11.47 0.00 39.08 0.98
3861 4090 3.190738 AACCAGCGCACCAGGCTAA 62.191 57.895 11.47 0.00 39.08 3.09
3866 4095 3.052082 CAGGAACCAGCGCACCAG 61.052 66.667 11.47 0.00 0.00 4.00
3871 4100 2.029844 GTGACTCAGGAACCAGCGC 61.030 63.158 0.00 0.00 0.00 5.92
3877 4106 3.056465 CCCAACTAGAGTGACTCAGGAAC 60.056 52.174 15.86 0.00 32.06 3.62
3885 4114 6.282199 TGAACTTATCCCAACTAGAGTGAC 57.718 41.667 0.00 0.00 0.00 3.67
3894 4125 5.414765 CCCTACAAGTTGAACTTATCCCAAC 59.585 44.000 10.63 0.00 36.03 3.77
3903 4134 2.054799 TGGAGCCCTACAAGTTGAACT 58.945 47.619 10.54 0.00 0.00 3.01
3904 4135 2.561478 TGGAGCCCTACAAGTTGAAC 57.439 50.000 10.54 0.00 0.00 3.18
3907 4138 4.222124 AGTTATGGAGCCCTACAAGTTG 57.778 45.455 0.00 0.00 0.00 3.16
3926 4157 3.953542 AGGAGGAACAAAGTCCAAAGT 57.046 42.857 0.00 0.00 40.48 2.66
3927 4158 5.598416 AAAAGGAGGAACAAAGTCCAAAG 57.402 39.130 0.00 0.00 40.48 2.77
3952 4183 3.057806 CCTTTTGTTCGCCGGACTAATTT 60.058 43.478 5.05 0.00 0.00 1.82
3953 4184 2.486592 CCTTTTGTTCGCCGGACTAATT 59.513 45.455 5.05 0.00 0.00 1.40
3955 4186 1.070445 TCCTTTTGTTCGCCGGACTAA 59.930 47.619 5.05 0.00 0.00 2.24
3957 4188 0.602905 CTCCTTTTGTTCGCCGGACT 60.603 55.000 5.05 0.00 0.00 3.85
3958 4189 0.601841 TCTCCTTTTGTTCGCCGGAC 60.602 55.000 5.05 0.00 0.00 4.79
3959 4190 0.107081 TTCTCCTTTTGTTCGCCGGA 59.893 50.000 5.05 0.00 0.00 5.14
3960 4191 0.948678 TTTCTCCTTTTGTTCGCCGG 59.051 50.000 0.00 0.00 0.00 6.13
3962 4193 2.858646 GCAGTTTCTCCTTTTGTTCGCC 60.859 50.000 0.00 0.00 0.00 5.54
3963 4194 2.033424 AGCAGTTTCTCCTTTTGTTCGC 59.967 45.455 0.00 0.00 0.00 4.70
3964 4195 3.561725 AGAGCAGTTTCTCCTTTTGTTCG 59.438 43.478 0.00 0.00 33.66 3.95
3966 4197 4.526970 TCAGAGCAGTTTCTCCTTTTGTT 58.473 39.130 0.00 0.00 33.66 2.83
3967 4198 4.156455 TCAGAGCAGTTTCTCCTTTTGT 57.844 40.909 0.00 0.00 33.66 2.83
3968 4199 5.702349 ATTCAGAGCAGTTTCTCCTTTTG 57.298 39.130 0.00 0.00 33.66 2.44
3970 4201 5.136105 ACAATTCAGAGCAGTTTCTCCTTT 58.864 37.500 0.00 0.00 33.66 3.11
3973 4204 4.633565 CCTACAATTCAGAGCAGTTTCTCC 59.366 45.833 0.00 0.00 33.66 3.71
3976 4220 3.127721 GGCCTACAATTCAGAGCAGTTTC 59.872 47.826 0.00 0.00 0.00 2.78
3980 4224 2.706339 AGGCCTACAATTCAGAGCAG 57.294 50.000 1.29 0.00 0.00 4.24
4015 4259 8.422577 AGGAAAGGCAAATAAGTCTTGTTATT 57.577 30.769 0.00 0.00 32.94 1.40
4078 4322 2.427812 TGCGACGTTCTATGATGGGTAA 59.572 45.455 0.00 0.00 0.00 2.85
4113 4357 2.158711 CCATGCCTTCTGCTCCTCATTA 60.159 50.000 0.00 0.00 42.00 1.90
4158 4402 2.223377 GCTTACAAGGTTGAACTCCACG 59.777 50.000 0.00 0.00 0.00 4.94
4188 4432 5.057149 ACTACCACTTCTGATTGTGTTCAC 58.943 41.667 9.40 0.00 32.76 3.18
4201 4445 1.071605 CGCAGCAAGACTACCACTTC 58.928 55.000 0.00 0.00 0.00 3.01
4207 4451 1.797025 AGAAACCGCAGCAAGACTAC 58.203 50.000 0.00 0.00 0.00 2.73
4210 4454 1.604278 AGAAAGAAACCGCAGCAAGAC 59.396 47.619 0.00 0.00 0.00 3.01
4218 4462 4.177783 TCAAAACCAAAGAAAGAAACCGC 58.822 39.130 0.00 0.00 0.00 5.68
4239 4483 8.175716 CGTAAACCTTCAGAGGAAACATTTATC 58.824 37.037 0.00 0.00 46.74 1.75
4243 4487 5.617252 TCGTAAACCTTCAGAGGAAACATT 58.383 37.500 0.00 0.00 46.74 2.71
4253 4498 1.659098 GCCACGATCGTAAACCTTCAG 59.341 52.381 22.26 4.90 0.00 3.02
4261 4506 4.582760 GTGGTGCCACGATCGTAA 57.417 55.556 22.26 6.91 37.19 3.18
4294 4539 0.931468 TACTCTCGATCCTTCCCCCA 59.069 55.000 0.00 0.00 0.00 4.96
4309 4554 5.846203 AGTGGTAGAGAGACGAGTATACTC 58.154 45.833 21.00 21.00 39.55 2.59
4318 4563 1.131504 GCAGTGAGTGGTAGAGAGACG 59.868 57.143 0.00 0.00 0.00 4.18
4324 4569 0.826256 ACCGTGCAGTGAGTGGTAGA 60.826 55.000 0.00 0.00 0.00 2.59
4325 4570 0.667487 CACCGTGCAGTGAGTGGTAG 60.667 60.000 0.00 0.00 40.34 3.18
4342 4587 3.134804 AGCTTACATGGTCATACTCCCAC 59.865 47.826 0.00 0.00 32.49 4.61
4368 4613 6.560003 AAGTGGAAAAGAAAACAGGGAAAT 57.440 33.333 0.00 0.00 0.00 2.17
4369 4614 6.437793 TGTAAGTGGAAAAGAAAACAGGGAAA 59.562 34.615 0.00 0.00 0.00 3.13
4376 4621 6.560711 TGAGCTTGTAAGTGGAAAAGAAAAC 58.439 36.000 0.00 0.00 0.00 2.43
4380 4625 7.665559 ACATATTGAGCTTGTAAGTGGAAAAGA 59.334 33.333 0.00 0.00 0.00 2.52
4382 4627 7.759489 ACATATTGAGCTTGTAAGTGGAAAA 57.241 32.000 0.00 0.00 0.00 2.29
4384 4629 6.538742 GCTACATATTGAGCTTGTAAGTGGAA 59.461 38.462 0.00 0.00 35.73 3.53
4385 4630 6.049149 GCTACATATTGAGCTTGTAAGTGGA 58.951 40.000 0.00 0.00 35.73 4.02
4386 4631 5.817296 TGCTACATATTGAGCTTGTAAGTGG 59.183 40.000 7.06 0.00 39.54 4.00
4387 4632 6.908870 TGCTACATATTGAGCTTGTAAGTG 57.091 37.500 7.06 0.00 39.54 3.16
4388 4633 7.275183 TGATGCTACATATTGAGCTTGTAAGT 58.725 34.615 7.06 0.00 39.54 2.24
4404 4649 8.715191 AAAAATGAAACAGTTTTGATGCTACA 57.285 26.923 8.65 0.00 39.56 2.74
4437 4682 3.251729 ACGTTCTACTGTTCTAACGCAGA 59.748 43.478 16.59 0.00 46.37 4.26
4438 4683 3.562505 ACGTTCTACTGTTCTAACGCAG 58.437 45.455 16.59 0.00 46.37 5.18
4442 4687 8.170553 TGAAAACAAACGTTCTACTGTTCTAAC 58.829 33.333 14.57 8.48 30.93 2.34
4450 4695 7.924412 TCACTATCTGAAAACAAACGTTCTACT 59.076 33.333 0.00 0.00 0.00 2.57
4454 4699 8.709646 AGTATCACTATCTGAAAACAAACGTTC 58.290 33.333 0.00 0.00 30.60 3.95
4461 4706 8.803235 ACAGTACAGTATCACTATCTGAAAACA 58.197 33.333 0.00 0.00 33.93 2.83
4462 4707 9.291664 GACAGTACAGTATCACTATCTGAAAAC 57.708 37.037 0.00 0.00 33.93 2.43
4463 4708 9.244292 AGACAGTACAGTATCACTATCTGAAAA 57.756 33.333 0.00 0.00 27.61 2.29
4464 4709 8.678199 CAGACAGTACAGTATCACTATCTGAAA 58.322 37.037 4.75 0.00 45.16 2.69
4465 4710 8.047310 TCAGACAGTACAGTATCACTATCTGAA 58.953 37.037 9.59 0.00 46.80 3.02
4466 4711 7.793927 CAGACAGTACAGTATCACTATCTGA 57.206 40.000 4.75 0.00 45.16 3.27
4467 4712 7.793927 TCAGACAGTACAGTATCACTATCTG 57.206 40.000 4.44 4.44 44.20 2.90
4468 4713 8.988546 ATTCAGACAGTACAGTATCACTATCT 57.011 34.615 0.00 0.00 28.60 1.98
4469 4714 9.457110 CAATTCAGACAGTACAGTATCACTATC 57.543 37.037 0.00 0.00 0.00 2.08
4470 4715 8.972127 ACAATTCAGACAGTACAGTATCACTAT 58.028 33.333 0.00 0.00 0.00 2.12
4471 4716 8.349568 ACAATTCAGACAGTACAGTATCACTA 57.650 34.615 0.00 0.00 0.00 2.74
4472 4717 7.233389 ACAATTCAGACAGTACAGTATCACT 57.767 36.000 0.00 0.00 0.00 3.41
4473 4718 7.598869 TCAACAATTCAGACAGTACAGTATCAC 59.401 37.037 0.00 0.00 0.00 3.06
4479 4724 9.173939 GAAATTTCAACAATTCAGACAGTACAG 57.826 33.333 13.40 0.00 0.00 2.74
4501 4746 7.068348 CAGGACCTTGAGATCAATGATTGAAAT 59.932 37.037 12.36 3.60 43.95 2.17
4509 4754 2.995283 TGCAGGACCTTGAGATCAATG 58.005 47.619 0.00 0.00 35.02 2.82
4511 4756 2.373169 ACTTGCAGGACCTTGAGATCAA 59.627 45.455 1.40 0.00 0.00 2.57
4512 4757 1.980765 ACTTGCAGGACCTTGAGATCA 59.019 47.619 1.40 0.00 0.00 2.92
4514 4759 2.553904 CCAACTTGCAGGACCTTGAGAT 60.554 50.000 1.40 0.00 0.00 2.75
4515 4760 1.202806 CCAACTTGCAGGACCTTGAGA 60.203 52.381 1.40 0.00 0.00 3.27
4523 4848 2.161855 CATGTTAGCCAACTTGCAGGA 58.838 47.619 1.40 0.00 34.29 3.86
4552 4878 2.294512 CCCTTCTTCAGGTTTCTGCAAC 59.705 50.000 0.00 0.00 42.02 4.17
4567 4893 0.251832 TCCACTCTTCGCTCCCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
4612 4938 2.093235 AGCTAATCACAGCCACTCCTTC 60.093 50.000 0.00 0.00 42.84 3.46
4790 5121 7.627298 CTTCATTCATCTCAGAAGGAAACAT 57.373 36.000 5.49 0.00 44.52 2.71
4801 5132 5.817296 CACGGTTTATCCTTCATTCATCTCA 59.183 40.000 0.00 0.00 0.00 3.27
4827 5158 6.435292 AGAGTACCAAGGACAATTACAACT 57.565 37.500 0.00 0.00 0.00 3.16
4912 5251 5.013547 TGTTTGGACAGAAGGTTGAAGAAA 58.986 37.500 0.00 0.00 0.00 2.52
4935 5274 4.077822 CCAAATTGAAGAACAGCTCCTCT 58.922 43.478 0.00 0.00 0.00 3.69
4943 5282 4.262549 CCAGAATGCCCAAATTGAAGAACA 60.263 41.667 0.00 0.00 31.97 3.18
4944 5283 4.248058 CCAGAATGCCCAAATTGAAGAAC 58.752 43.478 0.00 0.00 31.97 3.01
5021 5360 4.468713 TGTTGGACAATTGATCCTTGTGA 58.531 39.130 13.59 0.00 36.98 3.58
5022 5361 4.321452 CCTGTTGGACAATTGATCCTTGTG 60.321 45.833 13.59 7.71 36.98 3.33
5023 5362 3.828451 CCTGTTGGACAATTGATCCTTGT 59.172 43.478 13.59 9.76 39.46 3.16
5024 5363 4.081406 TCCTGTTGGACAATTGATCCTTG 58.919 43.478 13.59 4.12 37.46 3.61
5025 5364 4.387026 TCCTGTTGGACAATTGATCCTT 57.613 40.909 13.59 0.00 37.46 3.36
5026 5365 4.043310 TCTTCCTGTTGGACAATTGATCCT 59.957 41.667 13.59 0.00 43.06 3.24
5027 5366 4.335416 TCTTCCTGTTGGACAATTGATCC 58.665 43.478 13.59 15.08 43.06 3.36
5101 5444 1.223487 GGGCCTTCATTCGGCTGTA 59.777 57.895 0.84 0.00 46.73 2.74
5103 5446 2.830370 GGGGCCTTCATTCGGCTG 60.830 66.667 0.84 0.00 46.73 4.85
5118 5461 0.666374 GACTTTCACGTTTGTGGGGG 59.334 55.000 0.00 0.00 46.42 5.40
5120 5463 3.002965 GGTAAGACTTTCACGTTTGTGGG 59.997 47.826 0.00 0.00 46.42 4.61
5142 5485 1.747355 GAACCAATGCTGATGGACCTG 59.253 52.381 9.52 0.00 40.56 4.00
5157 5500 6.837312 TCCTTACAAAAGAAGATCAGAACCA 58.163 36.000 0.00 0.00 34.37 3.67
5159 5502 7.875554 AGTCTCCTTACAAAAGAAGATCAGAAC 59.124 37.037 0.00 0.00 27.88 3.01
5202 5545 4.991776 TGATCTAGTGGATGAGGAGTAGG 58.008 47.826 0.00 0.00 34.33 3.18
5203 5546 5.630121 ACTGATCTAGTGGATGAGGAGTAG 58.370 45.833 7.80 0.00 39.47 2.57
5204 5547 5.371176 AGACTGATCTAGTGGATGAGGAGTA 59.629 44.000 7.80 0.00 39.47 2.59
5205 5548 4.167892 AGACTGATCTAGTGGATGAGGAGT 59.832 45.833 7.80 0.00 39.47 3.85
5208 5551 3.826157 GGAGACTGATCTAGTGGATGAGG 59.174 52.174 7.80 0.00 39.47 3.86
5217 5560 3.635836 TGCATGACTGGAGACTGATCTAG 59.364 47.826 0.00 0.00 34.34 2.43
5227 5570 5.163364 ACCTAATTCTACTGCATGACTGGAG 60.163 44.000 0.00 0.00 45.64 3.86
5235 5578 7.599245 GCGTTATCTAACCTAATTCTACTGCAT 59.401 37.037 0.00 0.00 32.69 3.96
5237 5580 7.146648 AGCGTTATCTAACCTAATTCTACTGC 58.853 38.462 0.00 0.00 32.69 4.40
5240 5583 9.074443 GCATAGCGTTATCTAACCTAATTCTAC 57.926 37.037 0.00 0.00 32.69 2.59
5260 5603 4.203076 ACCCGGTCGACGCATAGC 62.203 66.667 9.92 0.00 42.52 2.97
5261 5604 2.071844 ATCACCCGGTCGACGCATAG 62.072 60.000 9.92 0.00 42.52 2.23
5262 5605 2.122797 ATCACCCGGTCGACGCATA 61.123 57.895 9.92 0.00 42.52 3.14
5263 5606 3.458163 ATCACCCGGTCGACGCAT 61.458 61.111 9.92 0.00 42.52 4.73
5264 5607 4.429212 CATCACCCGGTCGACGCA 62.429 66.667 9.92 0.00 42.52 5.24
5265 5608 3.927163 AACATCACCCGGTCGACGC 62.927 63.158 9.92 1.55 42.52 5.19
5267 5610 0.320073 TCAAACATCACCCGGTCGAC 60.320 55.000 7.13 7.13 0.00 4.20
5268 5611 0.393448 TTCAAACATCACCCGGTCGA 59.607 50.000 0.00 0.00 0.00 4.20
5269 5612 1.448985 ATTCAAACATCACCCGGTCG 58.551 50.000 0.00 0.00 0.00 4.79
5271 5614 3.226777 TCAAATTCAAACATCACCCGGT 58.773 40.909 0.00 0.00 0.00 5.28
5273 5616 4.097714 CGATCAAATTCAAACATCACCCG 58.902 43.478 0.00 0.00 0.00 5.28
5274 5617 4.423732 CCGATCAAATTCAAACATCACCC 58.576 43.478 0.00 0.00 0.00 4.61
5276 5619 3.859386 GGCCGATCAAATTCAAACATCAC 59.141 43.478 0.00 0.00 0.00 3.06
5278 5621 3.108144 CGGCCGATCAAATTCAAACATC 58.892 45.455 24.07 0.00 0.00 3.06
5280 5623 1.402194 GCGGCCGATCAAATTCAAACA 60.402 47.619 33.48 0.00 0.00 2.83
5281 5624 1.268265 GCGGCCGATCAAATTCAAAC 58.732 50.000 33.48 1.16 0.00 2.93
5282 5625 0.172352 GGCGGCCGATCAAATTCAAA 59.828 50.000 33.48 0.00 0.00 2.69
5283 5626 0.679640 AGGCGGCCGATCAAATTCAA 60.680 50.000 33.48 0.00 0.00 2.69
5284 5627 0.679640 AAGGCGGCCGATCAAATTCA 60.680 50.000 33.48 0.00 0.00 2.57
5285 5628 0.029433 GAAGGCGGCCGATCAAATTC 59.971 55.000 33.48 17.67 0.00 2.17
5286 5629 0.679640 TGAAGGCGGCCGATCAAATT 60.680 50.000 33.48 12.97 0.00 1.82
5287 5630 1.077787 TGAAGGCGGCCGATCAAAT 60.078 52.632 33.48 7.78 0.00 2.32
5288 5631 2.038269 GTGAAGGCGGCCGATCAAA 61.038 57.895 33.48 7.90 0.00 2.69
5289 5632 2.435938 GTGAAGGCGGCCGATCAA 60.436 61.111 33.48 6.60 0.00 2.57
5290 5633 4.467084 GGTGAAGGCGGCCGATCA 62.467 66.667 33.48 25.53 0.00 2.92
5296 5639 3.733344 TATCTGCGGTGAAGGCGGC 62.733 63.158 0.00 0.00 36.71 6.53
5297 5640 1.592669 CTATCTGCGGTGAAGGCGG 60.593 63.158 0.00 0.00 38.14 6.13
5298 5641 0.179111 TTCTATCTGCGGTGAAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
5299 5642 1.291132 GTTCTATCTGCGGTGAAGGC 58.709 55.000 0.00 0.00 0.00 4.35
5300 5643 2.672961 TGTTCTATCTGCGGTGAAGG 57.327 50.000 0.00 0.00 0.00 3.46
5301 5644 3.785486 TCATGTTCTATCTGCGGTGAAG 58.215 45.455 0.00 0.00 0.00 3.02
5302 5645 3.785486 CTCATGTTCTATCTGCGGTGAA 58.215 45.455 0.00 0.00 0.00 3.18
5303 5646 2.481969 GCTCATGTTCTATCTGCGGTGA 60.482 50.000 0.00 0.00 0.00 4.02
5304 5647 1.863454 GCTCATGTTCTATCTGCGGTG 59.137 52.381 0.00 0.00 0.00 4.94
5305 5648 1.202580 GGCTCATGTTCTATCTGCGGT 60.203 52.381 0.00 0.00 0.00 5.68
5306 5649 1.506493 GGCTCATGTTCTATCTGCGG 58.494 55.000 0.00 0.00 0.00 5.69
5307 5650 1.135046 CGGCTCATGTTCTATCTGCG 58.865 55.000 0.00 0.00 0.00 5.18
5308 5651 1.863454 CACGGCTCATGTTCTATCTGC 59.137 52.381 0.00 0.00 0.00 4.26
5309 5652 2.862536 CACACGGCTCATGTTCTATCTG 59.137 50.000 0.00 0.00 0.00 2.90
5310 5653 2.760650 TCACACGGCTCATGTTCTATCT 59.239 45.455 0.00 0.00 0.00 1.98
5311 5654 3.165058 TCACACGGCTCATGTTCTATC 57.835 47.619 0.00 0.00 0.00 2.08
5312 5655 3.386078 AGATCACACGGCTCATGTTCTAT 59.614 43.478 0.00 0.00 0.00 1.98
5313 5656 2.760650 AGATCACACGGCTCATGTTCTA 59.239 45.455 0.00 0.00 0.00 2.10
5314 5657 1.552337 AGATCACACGGCTCATGTTCT 59.448 47.619 0.00 0.00 0.00 3.01
5315 5658 1.929836 GAGATCACACGGCTCATGTTC 59.070 52.381 0.00 0.00 0.00 3.18
5316 5659 1.406069 GGAGATCACACGGCTCATGTT 60.406 52.381 0.00 0.00 0.00 2.71
5317 5660 0.176680 GGAGATCACACGGCTCATGT 59.823 55.000 0.00 0.00 0.00 3.21
5318 5661 0.176449 TGGAGATCACACGGCTCATG 59.824 55.000 0.00 0.00 0.00 3.07
5319 5662 0.176680 GTGGAGATCACACGGCTCAT 59.823 55.000 5.03 0.00 45.39 2.90
5320 5663 1.591703 GTGGAGATCACACGGCTCA 59.408 57.895 5.03 0.00 45.39 4.26
5321 5664 4.504132 GTGGAGATCACACGGCTC 57.496 61.111 5.03 0.00 45.39 4.70
5328 5671 5.412594 TGTCAATTAAAGCAGTGGAGATCAC 59.587 40.000 0.00 0.00 46.39 3.06
5342 5685 1.271102 GGCTGGGCGTTGTCAATTAAA 59.729 47.619 0.00 0.00 0.00 1.52
5344 5687 1.302383 CGGCTGGGCGTTGTCAATTA 61.302 55.000 8.37 0.00 0.00 1.40
5348 5691 4.555709 AACGGCTGGGCGTTGTCA 62.556 61.111 28.48 0.00 0.00 3.58
5418 5763 6.484643 TCAGTTTCAGAGAAAGTTGGATTCAG 59.515 38.462 0.00 0.00 0.00 3.02
5419 5764 6.356556 TCAGTTTCAGAGAAAGTTGGATTCA 58.643 36.000 0.00 0.00 0.00 2.57
5460 5805 2.870411 GTGGGTACAACAGAGTTGTGAC 59.130 50.000 21.89 14.90 37.67 3.67
5468 5813 3.157881 CAGAGAGAGTGGGTACAACAGA 58.842 50.000 0.00 0.00 0.00 3.41
5470 5815 2.891580 GTCAGAGAGAGTGGGTACAACA 59.108 50.000 0.00 0.00 0.00 3.33
5471 5816 2.231721 GGTCAGAGAGAGTGGGTACAAC 59.768 54.545 0.00 0.00 0.00 3.32
5472 5817 2.526432 GGTCAGAGAGAGTGGGTACAA 58.474 52.381 0.00 0.00 0.00 2.41
5487 5842 1.610102 CCAAACTGCAGAGAGGGTCAG 60.610 57.143 23.35 0.00 0.00 3.51
5488 5843 0.397941 CCAAACTGCAGAGAGGGTCA 59.602 55.000 23.35 0.00 0.00 4.02
5489 5844 0.957888 GCCAAACTGCAGAGAGGGTC 60.958 60.000 23.35 8.53 0.00 4.46
5502 5857 0.675837 GTAAGGAGGGGTCGCCAAAC 60.676 60.000 8.89 0.00 35.12 2.93
5504 5859 2.295602 GGTAAGGAGGGGTCGCCAA 61.296 63.158 8.89 0.00 35.12 4.52
5514 5869 0.108615 CAGAGCGTGTGGGTAAGGAG 60.109 60.000 0.00 0.00 0.00 3.69
5515 5870 0.541063 TCAGAGCGTGTGGGTAAGGA 60.541 55.000 0.00 0.00 0.00 3.36
5536 5892 3.733960 CTCAGCGTCGGTCGACCA 61.734 66.667 32.80 17.85 41.76 4.02
5543 5899 4.803426 GGAGGTGCTCAGCGTCGG 62.803 72.222 0.00 0.00 31.08 4.79
5550 5906 4.298626 AGATAGTTATTGGGAGGTGCTCA 58.701 43.478 0.00 0.00 31.08 4.26
5574 5930 2.361230 CCCTTTCCCGGAAGCACC 60.361 66.667 0.73 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.