Multiple sequence alignment - TraesCS2D01G424600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G424600 chr2D 100.000 3485 0 0 1 3485 537337356 537340840 0.000000e+00 6436.0
1 TraesCS2D01G424600 chr2D 73.429 2100 383 91 478 2488 537329461 537331474 2.950000e-175 625.0
2 TraesCS2D01G424600 chr2D 76.492 1106 201 44 1243 2316 529684140 529685218 6.580000e-152 547.0
3 TraesCS2D01G424600 chr2D 79.941 673 104 20 1818 2481 537438085 537437435 1.890000e-127 466.0
4 TraesCS2D01G424600 chr2D 77.966 295 44 3 76 349 378737139 378736845 7.740000e-37 165.0
5 TraesCS2D01G424600 chr2D 95.588 68 3 0 2778 2845 16164513 16164580 3.680000e-20 110.0
6 TraesCS2D01G424600 chr2D 80.189 106 13 4 2672 2772 102726977 102726875 4.830000e-09 73.1
7 TraesCS2D01G424600 chr2A 92.947 2141 96 31 367 2481 679963752 679965863 0.000000e+00 3066.0
8 TraesCS2D01G424600 chr2A 82.239 670 98 15 1818 2481 679976820 679976166 3.040000e-155 558.0
9 TraesCS2D01G424600 chr2A 74.799 1369 272 50 984 2311 679926124 679927460 1.830000e-152 549.0
10 TraesCS2D01G424600 chr2A 93.137 102 4 2 3386 3485 679966959 679967059 2.800000e-31 147.0
11 TraesCS2D01G424600 chr2B 93.725 1769 88 10 724 2485 639517902 639519654 0.000000e+00 2630.0
12 TraesCS2D01G424600 chr2B 76.630 1104 207 41 1243 2316 629815160 629816242 2.350000e-156 562.0
13 TraesCS2D01G424600 chr2B 85.977 435 61 0 2047 2481 639997166 639996732 1.890000e-127 466.0
14 TraesCS2D01G424600 chr2B 84.071 226 26 6 3252 3469 639522305 639522528 3.520000e-50 209.0
15 TraesCS2D01G424600 chr2B 87.903 124 8 5 594 713 639517711 639517831 4.690000e-29 139.0
16 TraesCS2D01G424600 chr2B 82.075 106 3 5 2549 2638 639519653 639519758 3.730000e-10 76.8
17 TraesCS2D01G424600 chr3A 81.892 370 60 6 5 369 583741697 583742064 4.370000e-79 305.0
18 TraesCS2D01G424600 chr5D 79.625 373 47 10 1 350 28039474 28039108 1.250000e-59 241.0
19 TraesCS2D01G424600 chr5D 98.485 66 1 0 2780 2845 358113692 358113627 2.200000e-22 117.0
20 TraesCS2D01G424600 chr5D 97.015 67 2 0 2780 2846 560915512 560915578 2.840000e-21 113.0
21 TraesCS2D01G424600 chr7D 79.947 374 32 21 1 345 46727134 46727493 5.820000e-58 235.0
22 TraesCS2D01G424600 chr7D 78.358 402 48 24 1 367 47814851 47815248 1.260000e-54 224.0
23 TraesCS2D01G424600 chr7D 97.015 67 2 0 2780 2846 447355962 447355896 2.840000e-21 113.0
24 TraesCS2D01G424600 chr4D 88.272 162 19 0 1 162 465065449 465065288 9.870000e-46 195.0
25 TraesCS2D01G424600 chr4D 100.000 65 0 0 2780 2844 155285993 155286057 1.700000e-23 121.0
26 TraesCS2D01G424600 chr4D 98.462 65 1 0 2780 2844 434970412 434970476 7.900000e-22 115.0
27 TraesCS2D01G424600 chr7A 84.795 171 25 1 1 170 369481435 369481265 1.660000e-38 171.0
28 TraesCS2D01G424600 chr4B 76.731 361 51 18 6 343 429004048 429004398 1.660000e-38 171.0
29 TraesCS2D01G424600 chr1B 84.884 172 20 4 1 170 10472333 10472166 5.980000e-38 169.0
30 TraesCS2D01G424600 chr1B 100.000 29 0 0 345 373 536093925 536093897 2.000000e-03 54.7
31 TraesCS2D01G424600 chr3D 83.636 165 17 4 7 170 529858793 529858638 2.800000e-31 147.0
32 TraesCS2D01G424600 chr5A 83.648 159 18 5 5 162 691275870 691275719 3.630000e-30 143.0
33 TraesCS2D01G424600 chr6D 98.462 65 1 0 2780 2844 169417670 169417606 7.900000e-22 115.0
34 TraesCS2D01G424600 chr7B 96.970 66 2 0 2780 2845 79915299 79915364 1.020000e-20 111.0
35 TraesCS2D01G424600 chr3B 95.652 69 3 0 2780 2848 809620539 809620471 1.020000e-20 111.0
36 TraesCS2D01G424600 chr3B 90.278 72 7 0 2 73 572369806 572369877 1.030000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G424600 chr2D 537337356 537340840 3484 False 6436.0 6436 100.0000 1 3485 1 chr2D.!!$F4 3484
1 TraesCS2D01G424600 chr2D 537329461 537331474 2013 False 625.0 625 73.4290 478 2488 1 chr2D.!!$F3 2010
2 TraesCS2D01G424600 chr2D 529684140 529685218 1078 False 547.0 547 76.4920 1243 2316 1 chr2D.!!$F2 1073
3 TraesCS2D01G424600 chr2D 537437435 537438085 650 True 466.0 466 79.9410 1818 2481 1 chr2D.!!$R3 663
4 TraesCS2D01G424600 chr2A 679963752 679967059 3307 False 1606.5 3066 93.0420 367 3485 2 chr2A.!!$F2 3118
5 TraesCS2D01G424600 chr2A 679976166 679976820 654 True 558.0 558 82.2390 1818 2481 1 chr2A.!!$R1 663
6 TraesCS2D01G424600 chr2A 679926124 679927460 1336 False 549.0 549 74.7990 984 2311 1 chr2A.!!$F1 1327
7 TraesCS2D01G424600 chr2B 639517711 639522528 4817 False 763.7 2630 86.9435 594 3469 4 chr2B.!!$F2 2875
8 TraesCS2D01G424600 chr2B 629815160 629816242 1082 False 562.0 562 76.6300 1243 2316 1 chr2B.!!$F1 1073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.032815 ACCCAAATTTTCCAACGCGG 59.967 50.0 12.47 0.0 0.00 6.46 F
351 352 0.032815 CCCAAATTTTCCAACGCGGT 59.967 50.0 12.47 0.0 35.57 5.68 F
362 363 0.110238 CAACGCGGTTGTTGGAGATG 60.110 55.0 12.47 0.0 44.27 2.90 F
443 444 0.239082 TTTGCATGTTGCTCTCGCTG 59.761 50.0 0.75 0.0 45.31 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2409 1.078356 CAGCTGCTGCACATCCTCT 60.078 57.895 17.73 0.0 42.74 3.69 R
2409 2613 3.748568 AGAACGTCAAGAAGATGGCTTTC 59.251 43.478 0.00 0.0 37.58 2.62 R
2475 2679 0.746204 GAGGGGCAGCTTACTTGAGC 60.746 60.000 0.00 0.0 43.02 4.26 R
2498 2708 0.095245 AAACATCACGCGCTTCATCG 59.905 50.000 5.73 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.254654 CCGTGCGCGATACCAGTG 61.255 66.667 23.45 0.00 41.33 3.66
18 19 3.913573 CGTGCGCGATACCAGTGC 61.914 66.667 16.08 0.00 44.57 4.40
19 20 2.509336 GTGCGCGATACCAGTGCT 60.509 61.111 12.10 0.00 44.60 4.40
20 21 2.100631 GTGCGCGATACCAGTGCTT 61.101 57.895 12.10 0.00 44.60 3.91
21 22 2.100031 TGCGCGATACCAGTGCTTG 61.100 57.895 12.10 0.00 44.60 4.01
34 35 2.435059 GCTTGGAGGAGCACCGAC 60.435 66.667 0.00 0.00 42.25 4.79
35 36 2.125912 CTTGGAGGAGCACCGACG 60.126 66.667 0.00 0.00 41.83 5.12
36 37 3.649277 CTTGGAGGAGCACCGACGG 62.649 68.421 13.61 13.61 41.83 4.79
37 38 4.671590 TGGAGGAGCACCGACGGA 62.672 66.667 23.38 0.00 41.83 4.69
38 39 3.827898 GGAGGAGCACCGACGGAG 61.828 72.222 23.38 14.88 41.83 4.63
39 40 3.827898 GAGGAGCACCGACGGAGG 61.828 72.222 23.38 13.36 41.83 4.30
63 64 4.107051 CAAAGCTCCCCGCGCAAG 62.107 66.667 8.75 0.00 45.59 4.01
102 103 3.622826 CGGAAGGGTCACGGGTGT 61.623 66.667 0.00 0.00 0.00 4.16
103 104 2.277591 CGGAAGGGTCACGGGTGTA 61.278 63.158 0.00 0.00 0.00 2.90
104 105 1.595357 GGAAGGGTCACGGGTGTAG 59.405 63.158 0.00 0.00 0.00 2.74
105 106 1.595357 GAAGGGTCACGGGTGTAGG 59.405 63.158 0.00 0.00 0.00 3.18
106 107 0.901580 GAAGGGTCACGGGTGTAGGA 60.902 60.000 0.00 0.00 0.00 2.94
107 108 0.472352 AAGGGTCACGGGTGTAGGAA 60.472 55.000 0.00 0.00 0.00 3.36
108 109 0.903454 AGGGTCACGGGTGTAGGAAG 60.903 60.000 0.00 0.00 0.00 3.46
109 110 1.595357 GGTCACGGGTGTAGGAAGG 59.405 63.158 0.00 0.00 0.00 3.46
110 111 1.595357 GTCACGGGTGTAGGAAGGG 59.405 63.158 0.00 0.00 0.00 3.95
111 112 2.267961 CACGGGTGTAGGAAGGGC 59.732 66.667 0.00 0.00 0.00 5.19
112 113 2.122056 ACGGGTGTAGGAAGGGCT 59.878 61.111 0.00 0.00 0.00 5.19
113 114 2.291043 ACGGGTGTAGGAAGGGCTG 61.291 63.158 0.00 0.00 0.00 4.85
114 115 1.987855 CGGGTGTAGGAAGGGCTGA 60.988 63.158 0.00 0.00 0.00 4.26
115 116 1.908483 GGGTGTAGGAAGGGCTGAG 59.092 63.158 0.00 0.00 0.00 3.35
116 117 1.627297 GGGTGTAGGAAGGGCTGAGG 61.627 65.000 0.00 0.00 0.00 3.86
117 118 1.627297 GGTGTAGGAAGGGCTGAGGG 61.627 65.000 0.00 0.00 0.00 4.30
118 119 1.306997 TGTAGGAAGGGCTGAGGGG 60.307 63.158 0.00 0.00 0.00 4.79
119 120 2.073101 GTAGGAAGGGCTGAGGGGG 61.073 68.421 0.00 0.00 0.00 5.40
120 121 2.261293 TAGGAAGGGCTGAGGGGGA 61.261 63.158 0.00 0.00 0.00 4.81
121 122 1.613284 TAGGAAGGGCTGAGGGGGAT 61.613 60.000 0.00 0.00 0.00 3.85
122 123 2.761465 GGAAGGGCTGAGGGGGATG 61.761 68.421 0.00 0.00 0.00 3.51
123 124 2.003548 GAAGGGCTGAGGGGGATGT 61.004 63.158 0.00 0.00 0.00 3.06
124 125 1.988982 GAAGGGCTGAGGGGGATGTC 61.989 65.000 0.00 0.00 0.00 3.06
125 126 3.866582 GGGCTGAGGGGGATGTCG 61.867 72.222 0.00 0.00 0.00 4.35
126 127 3.866582 GGCTGAGGGGGATGTCGG 61.867 72.222 0.00 0.00 0.00 4.79
127 128 4.554036 GCTGAGGGGGATGTCGGC 62.554 72.222 0.00 0.00 37.89 5.54
128 129 4.227134 CTGAGGGGGATGTCGGCG 62.227 72.222 0.00 0.00 0.00 6.46
136 137 3.475774 GATGTCGGCGCGTTCGTT 61.476 61.111 19.59 9.22 38.14 3.85
137 138 3.401846 GATGTCGGCGCGTTCGTTC 62.402 63.158 19.59 15.06 38.14 3.95
138 139 4.927444 TGTCGGCGCGTTCGTTCA 62.927 61.111 19.59 16.81 38.14 3.18
139 140 3.475774 GTCGGCGCGTTCGTTCAT 61.476 61.111 19.59 0.00 38.14 2.57
140 141 3.176578 TCGGCGCGTTCGTTCATC 61.177 61.111 19.59 0.00 38.14 2.92
141 142 4.537533 CGGCGCGTTCGTTCATCG 62.538 66.667 8.43 0.00 41.41 3.84
142 143 3.475774 GGCGCGTTCGTTCATCGT 61.476 61.111 8.43 0.00 40.80 3.73
143 144 2.275202 GCGCGTTCGTTCATCGTG 60.275 61.111 8.43 0.00 40.80 4.35
144 145 2.275202 CGCGTTCGTTCATCGTGC 60.275 61.111 0.00 0.00 40.80 5.34
145 146 2.275202 GCGTTCGTTCATCGTGCG 60.275 61.111 0.00 0.00 40.80 5.34
146 147 2.712918 GCGTTCGTTCATCGTGCGA 61.713 57.895 0.00 0.00 40.80 5.10
147 148 1.770432 CGTTCGTTCATCGTGCGAA 59.230 52.632 0.00 0.00 41.45 4.70
148 149 0.365523 CGTTCGTTCATCGTGCGAAT 59.634 50.000 0.00 0.00 44.57 3.34
149 150 1.201769 CGTTCGTTCATCGTGCGAATT 60.202 47.619 0.00 0.00 44.57 2.17
150 151 2.418714 GTTCGTTCATCGTGCGAATTC 58.581 47.619 0.00 0.00 44.57 2.17
151 152 0.638242 TCGTTCATCGTGCGAATTCG 59.362 50.000 23.34 23.34 40.80 3.34
211 212 2.476051 GTGTGCATCACGCGGAAG 59.524 61.111 12.47 3.09 46.97 3.46
212 213 2.030412 TGTGCATCACGCGGAAGT 59.970 55.556 12.47 0.00 46.97 3.01
213 214 2.316867 TGTGCATCACGCGGAAGTG 61.317 57.895 12.47 4.79 46.97 3.16
216 217 3.499737 CATCACGCGGAAGTGGGC 61.500 66.667 12.47 0.00 46.73 5.36
224 225 2.975799 GGAAGTGGGCGCACGAAA 60.976 61.111 25.95 0.00 0.00 3.46
225 226 2.332654 GGAAGTGGGCGCACGAAAT 61.333 57.895 25.95 14.79 0.00 2.17
226 227 1.022451 GGAAGTGGGCGCACGAAATA 61.022 55.000 25.95 0.00 0.00 1.40
227 228 0.800012 GAAGTGGGCGCACGAAATAA 59.200 50.000 25.95 0.00 0.00 1.40
228 229 0.802494 AAGTGGGCGCACGAAATAAG 59.198 50.000 25.95 0.00 0.00 1.73
229 230 0.321298 AGTGGGCGCACGAAATAAGT 60.321 50.000 25.95 5.27 0.00 2.24
230 231 0.179200 GTGGGCGCACGAAATAAGTG 60.179 55.000 18.81 0.00 42.15 3.16
231 232 1.302383 TGGGCGCACGAAATAAGTGG 61.302 55.000 10.83 0.00 39.80 4.00
232 233 1.226295 GGCGCACGAAATAAGTGGC 60.226 57.895 10.83 0.00 39.80 5.01
233 234 1.580132 GCGCACGAAATAAGTGGCG 60.580 57.895 0.30 0.00 39.80 5.69
234 235 1.580132 CGCACGAAATAAGTGGCGC 60.580 57.895 0.00 0.00 39.80 6.53
235 236 1.580132 GCACGAAATAAGTGGCGCG 60.580 57.895 0.00 0.00 39.80 6.86
236 237 1.785321 CACGAAATAAGTGGCGCGT 59.215 52.632 8.43 0.00 36.06 6.01
237 238 0.247145 CACGAAATAAGTGGCGCGTC 60.247 55.000 2.29 2.29 36.06 5.19
238 239 0.668096 ACGAAATAAGTGGCGCGTCA 60.668 50.000 10.57 10.57 0.00 4.35
239 240 0.650512 CGAAATAAGTGGCGCGTCAT 59.349 50.000 19.85 3.77 0.00 3.06
240 241 1.592110 CGAAATAAGTGGCGCGTCATG 60.592 52.381 19.85 0.00 0.00 3.07
241 242 0.098728 AAATAAGTGGCGCGTCATGC 59.901 50.000 19.85 4.54 41.47 4.06
247 248 4.811761 GGCGCGTCATGCCGTTTC 62.812 66.667 5.47 0.00 43.70 2.78
250 251 4.811761 GCGTCATGCCGTTTCGCC 62.812 66.667 0.00 0.00 40.83 5.54
251 252 4.160635 CGTCATGCCGTTTCGCCC 62.161 66.667 0.00 0.00 0.00 6.13
252 253 3.810896 GTCATGCCGTTTCGCCCC 61.811 66.667 0.00 0.00 0.00 5.80
266 267 3.259751 CCCCGCGCGCTAAACTAC 61.260 66.667 30.48 0.00 0.00 2.73
267 268 2.202703 CCCGCGCGCTAAACTACT 60.203 61.111 30.48 0.00 0.00 2.57
268 269 1.808390 CCCGCGCGCTAAACTACTT 60.808 57.895 30.48 0.00 0.00 2.24
269 270 0.526096 CCCGCGCGCTAAACTACTTA 60.526 55.000 30.48 0.00 0.00 2.24
270 271 1.484356 CCGCGCGCTAAACTACTTAT 58.516 50.000 30.48 0.00 0.00 1.73
271 272 1.856597 CCGCGCGCTAAACTACTTATT 59.143 47.619 30.48 0.00 0.00 1.40
272 273 2.097541 CCGCGCGCTAAACTACTTATTC 60.098 50.000 30.48 0.00 0.00 1.75
273 274 2.097541 CGCGCGCTAAACTACTTATTCC 60.098 50.000 30.48 0.00 0.00 3.01
274 275 2.097541 GCGCGCTAAACTACTTATTCCG 60.098 50.000 26.67 0.00 0.00 4.30
275 276 2.097541 CGCGCTAAACTACTTATTCCGC 60.098 50.000 5.56 0.00 32.53 5.54
276 277 2.097541 GCGCTAAACTACTTATTCCGCG 60.098 50.000 0.00 0.00 40.83 6.46
277 278 3.111098 CGCTAAACTACTTATTCCGCGT 58.889 45.455 4.92 0.00 34.13 6.01
278 279 3.061403 CGCTAAACTACTTATTCCGCGTG 60.061 47.826 4.92 0.00 34.13 5.34
279 280 3.302286 GCTAAACTACTTATTCCGCGTGC 60.302 47.826 4.92 0.00 0.00 5.34
280 281 2.373540 AACTACTTATTCCGCGTGCA 57.626 45.000 4.92 0.00 0.00 4.57
281 282 1.636988 ACTACTTATTCCGCGTGCAC 58.363 50.000 6.82 6.82 0.00 4.57
282 283 0.570734 CTACTTATTCCGCGTGCACG 59.429 55.000 34.01 34.01 43.27 5.34
290 291 3.677340 CGCGTGCACGGTTTTTGC 61.677 61.111 37.47 19.52 40.63 3.68
291 292 3.677340 GCGTGCACGGTTTTTGCG 61.677 61.111 37.47 12.23 43.34 4.85
292 293 3.677340 CGTGCACGGTTTTTGCGC 61.677 61.111 31.15 0.00 45.21 6.09
293 294 3.326981 GTGCACGGTTTTTGCGCC 61.327 61.111 4.18 0.00 43.34 6.53
294 295 3.522731 TGCACGGTTTTTGCGCCT 61.523 55.556 4.18 0.00 43.34 5.52
295 296 2.279186 GCACGGTTTTTGCGCCTT 60.279 55.556 4.18 0.00 0.00 4.35
296 297 2.300066 GCACGGTTTTTGCGCCTTC 61.300 57.895 4.18 0.00 0.00 3.46
297 298 1.064946 CACGGTTTTTGCGCCTTCA 59.935 52.632 4.18 0.00 0.00 3.02
298 299 1.065109 ACGGTTTTTGCGCCTTCAC 59.935 52.632 4.18 0.00 0.00 3.18
299 300 1.358759 CGGTTTTTGCGCCTTCACT 59.641 52.632 4.18 0.00 0.00 3.41
300 301 0.589223 CGGTTTTTGCGCCTTCACTA 59.411 50.000 4.18 0.00 0.00 2.74
301 302 1.002251 CGGTTTTTGCGCCTTCACTAA 60.002 47.619 4.18 0.00 0.00 2.24
302 303 2.541999 CGGTTTTTGCGCCTTCACTAAA 60.542 45.455 4.18 0.00 0.00 1.85
303 304 3.049912 GGTTTTTGCGCCTTCACTAAAG 58.950 45.455 4.18 0.00 34.52 1.85
304 305 2.415697 TTTTGCGCCTTCACTAAAGC 57.584 45.000 4.18 0.00 33.29 3.51
305 306 0.237235 TTTGCGCCTTCACTAAAGCG 59.763 50.000 4.18 0.00 37.48 4.68
306 307 2.098489 GCGCCTTCACTAAAGCGC 59.902 61.111 12.64 12.64 45.76 5.92
307 308 2.785258 CGCCTTCACTAAAGCGCC 59.215 61.111 2.29 0.00 33.29 6.53
308 309 2.750888 CGCCTTCACTAAAGCGCCC 61.751 63.158 2.29 0.00 33.29 6.13
309 310 2.750888 GCCTTCACTAAAGCGCCCG 61.751 63.158 2.29 0.00 33.29 6.13
310 311 2.106683 CCTTCACTAAAGCGCCCGG 61.107 63.158 2.29 0.00 33.29 5.73
311 312 1.079405 CTTCACTAAAGCGCCCGGA 60.079 57.895 0.73 0.00 0.00 5.14
312 313 1.079405 TTCACTAAAGCGCCCGGAG 60.079 57.895 0.73 0.00 0.00 4.63
313 314 3.195698 CACTAAAGCGCCCGGAGC 61.196 66.667 0.73 8.68 38.52 4.70
331 332 4.326766 GGCTGCGCGCACAGAAAA 62.327 61.111 33.09 7.39 40.25 2.29
332 333 3.093449 GCTGCGCGCACAGAAAAC 61.093 61.111 33.09 9.72 40.25 2.43
333 334 2.427410 CTGCGCGCACAGAAAACC 60.427 61.111 33.09 0.00 40.25 3.27
334 335 3.879351 CTGCGCGCACAGAAAACCC 62.879 63.158 33.09 0.00 40.25 4.11
335 336 3.959975 GCGCGCACAGAAAACCCA 61.960 61.111 29.10 0.00 0.00 4.51
336 337 2.718731 CGCGCACAGAAAACCCAA 59.281 55.556 8.75 0.00 0.00 4.12
337 338 1.064946 CGCGCACAGAAAACCCAAA 59.935 52.632 8.75 0.00 0.00 3.28
338 339 0.318614 CGCGCACAGAAAACCCAAAT 60.319 50.000 8.75 0.00 0.00 2.32
339 340 1.864565 GCGCACAGAAAACCCAAATT 58.135 45.000 0.30 0.00 0.00 1.82
340 341 2.209273 GCGCACAGAAAACCCAAATTT 58.791 42.857 0.30 0.00 0.00 1.82
341 342 2.611751 GCGCACAGAAAACCCAAATTTT 59.388 40.909 0.30 0.00 34.46 1.82
342 343 3.303066 GCGCACAGAAAACCCAAATTTTC 60.303 43.478 0.30 3.34 45.18 2.29
343 344 3.247411 CGCACAGAAAACCCAAATTTTCC 59.753 43.478 7.23 0.00 45.72 3.13
344 345 4.195416 GCACAGAAAACCCAAATTTTCCA 58.805 39.130 7.23 0.00 45.72 3.53
345 346 4.637977 GCACAGAAAACCCAAATTTTCCAA 59.362 37.500 7.23 0.00 45.72 3.53
346 347 5.448496 GCACAGAAAACCCAAATTTTCCAAC 60.448 40.000 7.23 0.00 45.72 3.77
347 348 4.873259 ACAGAAAACCCAAATTTTCCAACG 59.127 37.500 7.23 0.00 45.72 4.10
348 349 3.874543 AGAAAACCCAAATTTTCCAACGC 59.125 39.130 7.23 0.00 45.72 4.84
349 350 1.859383 AACCCAAATTTTCCAACGCG 58.141 45.000 3.53 3.53 0.00 6.01
350 351 0.032815 ACCCAAATTTTCCAACGCGG 59.967 50.000 12.47 0.00 0.00 6.46
351 352 0.032815 CCCAAATTTTCCAACGCGGT 59.967 50.000 12.47 0.00 35.57 5.68
352 353 1.539280 CCCAAATTTTCCAACGCGGTT 60.539 47.619 12.47 0.00 35.57 4.44
353 354 1.524776 CCAAATTTTCCAACGCGGTTG 59.475 47.619 12.47 12.51 42.49 3.77
354 355 2.197577 CAAATTTTCCAACGCGGTTGT 58.802 42.857 12.47 0.00 41.41 3.32
355 356 2.588027 AATTTTCCAACGCGGTTGTT 57.412 40.000 12.47 0.00 41.41 2.83
356 357 1.846541 ATTTTCCAACGCGGTTGTTG 58.153 45.000 12.47 5.53 46.86 3.33
360 361 3.725819 CAACGCGGTTGTTGGAGA 58.274 55.556 12.47 0.00 44.27 3.71
361 362 2.244000 CAACGCGGTTGTTGGAGAT 58.756 52.632 12.47 0.00 44.27 2.75
362 363 0.110238 CAACGCGGTTGTTGGAGATG 60.110 55.000 12.47 0.00 44.27 2.90
363 364 1.852067 AACGCGGTTGTTGGAGATGC 61.852 55.000 12.47 0.00 0.00 3.91
364 365 2.034879 CGCGGTTGTTGGAGATGCT 61.035 57.895 0.00 0.00 0.00 3.79
365 366 1.796796 GCGGTTGTTGGAGATGCTC 59.203 57.895 0.00 0.00 0.00 4.26
380 381 0.530744 TGCTCTTAGGCGTACACTGG 59.469 55.000 0.00 0.00 34.52 4.00
385 386 4.217983 GCTCTTAGGCGTACACTGGTATAT 59.782 45.833 0.00 0.00 0.00 0.86
386 387 5.413833 GCTCTTAGGCGTACACTGGTATATA 59.586 44.000 0.00 0.00 0.00 0.86
387 388 6.095160 GCTCTTAGGCGTACACTGGTATATAT 59.905 42.308 0.00 0.00 0.00 0.86
388 389 7.281774 GCTCTTAGGCGTACACTGGTATATATA 59.718 40.741 0.00 0.00 0.00 0.86
443 444 0.239082 TTTGCATGTTGCTCTCGCTG 59.761 50.000 0.75 0.00 45.31 5.18
463 464 4.694339 CTGTGGCCACTTTCCTATAGTAC 58.306 47.826 34.75 5.32 0.00 2.73
470 471 6.461231 GGCCACTTTCCTATAGTACTGTACTG 60.461 46.154 26.45 12.49 39.81 2.74
498 499 8.480643 AATACCTTAGTCATCGAAAAGTTGAG 57.519 34.615 0.00 0.00 29.93 3.02
549 552 6.248569 AGAAGTTGAAAAGGTTCCTCTGTA 57.751 37.500 0.00 0.00 32.28 2.74
550 553 6.056236 AGAAGTTGAAAAGGTTCCTCTGTAC 58.944 40.000 0.00 0.00 32.28 2.90
551 554 4.377897 AGTTGAAAAGGTTCCTCTGTACG 58.622 43.478 0.00 0.00 32.28 3.67
552 555 4.124970 GTTGAAAAGGTTCCTCTGTACGT 58.875 43.478 0.00 0.00 32.28 3.57
555 558 5.916318 TGAAAAGGTTCCTCTGTACGTTAA 58.084 37.500 0.00 0.00 32.28 2.01
650 658 2.672961 TGTCCTGATCGAACATGTCC 57.327 50.000 0.00 0.00 0.00 4.02
694 705 1.568612 CCGGCCGGATCATCATTTCG 61.569 60.000 41.82 6.56 37.50 3.46
696 707 0.868406 GGCCGGATCATCATTTCGTC 59.132 55.000 5.05 0.00 0.00 4.20
700 712 3.807622 GCCGGATCATCATTTCGTCTTTA 59.192 43.478 5.05 0.00 0.00 1.85
705 717 8.556194 CCGGATCATCATTTCGTCTTTATTTTA 58.444 33.333 0.00 0.00 0.00 1.52
781 854 4.040936 AGGACAGAGAGAAAGCTACTCA 57.959 45.455 18.63 0.00 36.91 3.41
782 855 4.016444 AGGACAGAGAGAAAGCTACTCAG 58.984 47.826 18.63 10.59 36.91 3.35
784 857 2.495669 ACAGAGAGAAAGCTACTCAGGC 59.504 50.000 18.63 10.17 36.91 4.85
786 859 1.827969 GAGAGAAAGCTACTCAGGCCA 59.172 52.381 18.63 0.00 36.91 5.36
788 861 1.552792 GAGAAAGCTACTCAGGCCAGT 59.447 52.381 5.01 2.54 34.87 4.00
834 919 5.822519 GGCATATCACTGATGTAGTTTTGGA 59.177 40.000 1.42 0.00 37.60 3.53
835 920 6.238484 GGCATATCACTGATGTAGTTTTGGAC 60.238 42.308 1.42 0.00 37.60 4.02
836 921 6.540189 GCATATCACTGATGTAGTTTTGGACT 59.460 38.462 1.42 0.00 42.55 3.85
837 922 7.066284 GCATATCACTGATGTAGTTTTGGACTT 59.934 37.037 1.42 0.00 39.86 3.01
838 923 8.950210 CATATCACTGATGTAGTTTTGGACTTT 58.050 33.333 1.42 0.00 39.86 2.66
839 924 7.823745 ATCACTGATGTAGTTTTGGACTTTT 57.176 32.000 0.00 0.00 39.86 2.27
840 925 7.026631 TCACTGATGTAGTTTTGGACTTTTG 57.973 36.000 0.00 0.00 39.86 2.44
841 926 6.039270 TCACTGATGTAGTTTTGGACTTTTGG 59.961 38.462 0.00 0.00 39.86 3.28
845 930 7.708998 TGATGTAGTTTTGGACTTTTGGTTAC 58.291 34.615 0.00 0.00 39.86 2.50
854 939 3.819337 GGACTTTTGGTTACCAACTCCTC 59.181 47.826 17.28 8.70 43.82 3.71
855 940 3.819337 GACTTTTGGTTACCAACTCCTCC 59.181 47.826 17.28 0.93 43.82 4.30
863 952 4.041815 GGTTACCAACTCCTCCTCTTTTCT 59.958 45.833 0.00 0.00 0.00 2.52
887 982 4.081752 AGTCTCTGCTCTAGGACATTTGTG 60.082 45.833 0.00 0.00 32.36 3.33
888 983 2.935201 CTCTGCTCTAGGACATTTGTGC 59.065 50.000 0.00 0.00 36.57 4.57
902 1000 4.453478 ACATTTGTGCTGTACATGTCTCTG 59.547 41.667 0.00 2.61 39.48 3.35
904 1002 3.303881 TGTGCTGTACATGTCTCTGAC 57.696 47.619 0.00 0.00 33.42 3.51
922 1020 2.167693 TGACATTCTCCCACGATACCAC 59.832 50.000 0.00 0.00 0.00 4.16
972 1085 2.939103 GTTAGCAGTAGCAACCATCCAG 59.061 50.000 0.00 0.00 45.49 3.86
973 1086 1.279496 AGCAGTAGCAACCATCCAGA 58.721 50.000 0.00 0.00 45.49 3.86
974 1087 1.842562 AGCAGTAGCAACCATCCAGAT 59.157 47.619 0.00 0.00 45.49 2.90
975 1088 2.158842 AGCAGTAGCAACCATCCAGATC 60.159 50.000 0.00 0.00 45.49 2.75
976 1089 2.843701 CAGTAGCAACCATCCAGATCC 58.156 52.381 0.00 0.00 0.00 3.36
977 1090 2.171237 CAGTAGCAACCATCCAGATCCA 59.829 50.000 0.00 0.00 0.00 3.41
981 1094 2.171448 AGCAACCATCCAGATCCAGTAC 59.829 50.000 0.00 0.00 0.00 2.73
1816 1990 1.026718 CGATGCTCCCAAGTTGGACC 61.027 60.000 24.06 10.95 40.96 4.46
1872 2046 3.118261 ACCACATCGTAGGAAGCAATGAT 60.118 43.478 0.00 0.00 0.00 2.45
2034 2238 4.916412 CGTAGATCGGCGTACCTG 57.084 61.111 6.85 0.00 35.71 4.00
2409 2613 3.316868 ACAAGTTTCATTACAACCACCGG 59.683 43.478 0.00 0.00 0.00 5.28
2436 2640 1.325355 TCTTCTTGACGTTCTCCGGT 58.675 50.000 0.00 0.00 42.24 5.28
2437 2641 1.000607 TCTTCTTGACGTTCTCCGGTG 60.001 52.381 0.00 0.00 42.24 4.94
2488 2698 2.665537 CTCAAGTCGCTCAAGTAAGCTG 59.334 50.000 0.00 0.00 40.23 4.24
2489 2699 1.127582 CAAGTCGCTCAAGTAAGCTGC 59.872 52.381 0.00 0.00 40.23 5.25
2490 2700 0.390472 AGTCGCTCAAGTAAGCTGCC 60.390 55.000 0.00 0.00 40.23 4.85
2491 2701 1.079127 TCGCTCAAGTAAGCTGCCC 60.079 57.895 0.00 0.00 40.23 5.36
2492 2702 2.109126 CGCTCAAGTAAGCTGCCCC 61.109 63.158 0.00 0.00 40.23 5.80
2493 2703 1.301293 GCTCAAGTAAGCTGCCCCT 59.699 57.895 0.00 0.00 39.27 4.79
2494 2704 0.746204 GCTCAAGTAAGCTGCCCCTC 60.746 60.000 0.00 0.00 39.27 4.30
2495 2705 0.107459 CTCAAGTAAGCTGCCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2496 2706 0.547712 TCAAGTAAGCTGCCCCTCCT 60.548 55.000 0.00 0.00 0.00 3.69
2497 2707 0.393537 CAAGTAAGCTGCCCCTCCTG 60.394 60.000 0.00 0.00 0.00 3.86
2498 2708 2.124529 GTAAGCTGCCCCTCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
2499 2709 3.785859 TAAGCTGCCCCTCCTGCG 61.786 66.667 0.00 0.00 35.19 5.18
2503 2713 3.473647 CTGCCCCTCCTGCGATGA 61.474 66.667 0.00 0.00 0.00 2.92
2504 2714 3.008517 TGCCCCTCCTGCGATGAA 61.009 61.111 0.00 0.00 0.00 2.57
2505 2715 2.203126 GCCCCTCCTGCGATGAAG 60.203 66.667 0.00 0.00 0.00 3.02
2506 2716 2.203126 CCCCTCCTGCGATGAAGC 60.203 66.667 0.00 0.00 37.71 3.86
2507 2717 2.587194 CCCTCCTGCGATGAAGCG 60.587 66.667 0.00 0.00 40.67 4.68
2515 2725 3.388134 CGATGAAGCGCGTGATGT 58.612 55.556 8.43 0.00 0.00 3.06
2516 2726 1.709760 CGATGAAGCGCGTGATGTT 59.290 52.632 8.43 0.00 0.00 2.71
2517 2727 0.095245 CGATGAAGCGCGTGATGTTT 59.905 50.000 8.43 0.00 0.00 2.83
2518 2728 1.464023 CGATGAAGCGCGTGATGTTTT 60.464 47.619 8.43 0.00 0.00 2.43
2519 2729 1.906966 GATGAAGCGCGTGATGTTTTG 59.093 47.619 8.43 0.00 0.00 2.44
2520 2730 0.660488 TGAAGCGCGTGATGTTTTGT 59.340 45.000 8.43 0.00 0.00 2.83
2521 2731 1.044725 GAAGCGCGTGATGTTTTGTG 58.955 50.000 8.43 0.00 0.00 3.33
2522 2732 0.380378 AAGCGCGTGATGTTTTGTGT 59.620 45.000 8.43 0.00 0.00 3.72
2523 2733 1.222300 AGCGCGTGATGTTTTGTGTA 58.778 45.000 8.43 0.00 0.00 2.90
2524 2734 1.804151 AGCGCGTGATGTTTTGTGTAT 59.196 42.857 8.43 0.00 0.00 2.29
2525 2735 1.904412 GCGCGTGATGTTTTGTGTATG 59.096 47.619 8.43 0.00 0.00 2.39
2526 2736 2.664424 GCGCGTGATGTTTTGTGTATGT 60.664 45.455 8.43 0.00 0.00 2.29
2527 2737 3.550561 CGCGTGATGTTTTGTGTATGTT 58.449 40.909 0.00 0.00 0.00 2.71
2528 2738 3.971871 CGCGTGATGTTTTGTGTATGTTT 59.028 39.130 0.00 0.00 0.00 2.83
2529 2739 4.086524 CGCGTGATGTTTTGTGTATGTTTC 59.913 41.667 0.00 0.00 0.00 2.78
2530 2740 4.381566 GCGTGATGTTTTGTGTATGTTTCC 59.618 41.667 0.00 0.00 0.00 3.13
2531 2741 5.757886 CGTGATGTTTTGTGTATGTTTCCT 58.242 37.500 0.00 0.00 0.00 3.36
2532 2742 6.205784 CGTGATGTTTTGTGTATGTTTCCTT 58.794 36.000 0.00 0.00 0.00 3.36
2533 2743 6.695278 CGTGATGTTTTGTGTATGTTTCCTTT 59.305 34.615 0.00 0.00 0.00 3.11
2534 2744 7.221838 CGTGATGTTTTGTGTATGTTTCCTTTT 59.778 33.333 0.00 0.00 0.00 2.27
2535 2745 8.539674 GTGATGTTTTGTGTATGTTTCCTTTTC 58.460 33.333 0.00 0.00 0.00 2.29
2536 2746 8.474025 TGATGTTTTGTGTATGTTTCCTTTTCT 58.526 29.630 0.00 0.00 0.00 2.52
2537 2747 9.313118 GATGTTTTGTGTATGTTTCCTTTTCTT 57.687 29.630 0.00 0.00 0.00 2.52
2538 2748 8.472683 TGTTTTGTGTATGTTTCCTTTTCTTG 57.527 30.769 0.00 0.00 0.00 3.02
2539 2749 7.064016 TGTTTTGTGTATGTTTCCTTTTCTTGC 59.936 33.333 0.00 0.00 0.00 4.01
2540 2750 6.463995 TTGTGTATGTTTCCTTTTCTTGCT 57.536 33.333 0.00 0.00 0.00 3.91
2541 2751 7.575414 TTGTGTATGTTTCCTTTTCTTGCTA 57.425 32.000 0.00 0.00 0.00 3.49
2542 2752 7.202016 TGTGTATGTTTCCTTTTCTTGCTAG 57.798 36.000 0.00 0.00 0.00 3.42
2543 2753 6.206634 TGTGTATGTTTCCTTTTCTTGCTAGG 59.793 38.462 0.00 0.00 0.00 3.02
2544 2754 4.790765 ATGTTTCCTTTTCTTGCTAGGC 57.209 40.909 0.00 0.00 0.00 3.93
2545 2755 3.832527 TGTTTCCTTTTCTTGCTAGGCT 58.167 40.909 0.00 0.00 0.00 4.58
2546 2756 4.980573 TGTTTCCTTTTCTTGCTAGGCTA 58.019 39.130 0.00 0.00 0.00 3.93
2547 2757 5.003804 TGTTTCCTTTTCTTGCTAGGCTAG 58.996 41.667 17.33 17.33 33.07 3.42
2548 2758 5.221843 TGTTTCCTTTTCTTGCTAGGCTAGA 60.222 40.000 25.37 2.81 38.48 2.43
2549 2759 5.499004 TTCCTTTTCTTGCTAGGCTAGAA 57.501 39.130 25.37 12.58 45.23 2.10
2578 2788 4.142730 GCTCTTGTTCCAACTGCTGAATAG 60.143 45.833 0.00 0.00 0.00 1.73
2579 2789 4.326826 TCTTGTTCCAACTGCTGAATAGG 58.673 43.478 0.00 0.00 0.00 2.57
2590 2812 8.070171 CCAACTGCTGAATAGGTAAATATTTCG 58.930 37.037 3.39 0.00 0.00 3.46
2592 2814 8.142994 ACTGCTGAATAGGTAAATATTTCGTG 57.857 34.615 3.39 0.00 0.00 4.35
2609 2835 0.663153 GTGTATTTGGCGCCCATCTC 59.337 55.000 26.77 12.39 31.53 2.75
2650 2887 4.129380 GGTTTTGCTGCCTGAATTTCTTT 58.871 39.130 0.00 0.00 0.00 2.52
2651 2888 5.296748 GGTTTTGCTGCCTGAATTTCTTTA 58.703 37.500 0.00 0.00 0.00 1.85
2653 2890 6.091305 GGTTTTGCTGCCTGAATTTCTTTATC 59.909 38.462 0.00 0.00 0.00 1.75
2660 2902 4.201920 GCCTGAATTTCTTTATCGGTCACC 60.202 45.833 0.00 0.00 0.00 4.02
2670 2934 0.250124 ATCGGTCACCTTTTGCACGA 60.250 50.000 0.00 0.00 37.44 4.35
2674 2938 0.586802 GTCACCTTTTGCACGAGGAC 59.413 55.000 18.87 6.19 36.84 3.85
2732 2996 3.102097 GCCAAGCCATGTACGAGC 58.898 61.111 0.00 0.00 0.00 5.03
2733 2997 2.813179 GCCAAGCCATGTACGAGCG 61.813 63.158 0.00 0.00 0.00 5.03
2779 3043 1.273327 GAGTCCGAAACTTAACCGGGA 59.727 52.381 6.32 0.00 43.16 5.14
2780 3044 1.274447 AGTCCGAAACTTAACCGGGAG 59.726 52.381 6.32 2.95 43.16 4.30
2781 3045 1.001293 GTCCGAAACTTAACCGGGAGT 59.999 52.381 6.32 3.70 43.16 3.85
2782 3046 2.231235 GTCCGAAACTTAACCGGGAGTA 59.769 50.000 6.32 0.00 43.16 2.59
2783 3047 2.493278 TCCGAAACTTAACCGGGAGTAG 59.507 50.000 6.32 0.00 43.16 2.57
2784 3048 2.265683 CGAAACTTAACCGGGAGTAGC 58.734 52.381 6.32 2.10 0.00 3.58
2786 3050 0.108472 AACTTAACCGGGAGTAGCGC 60.108 55.000 6.32 0.00 0.00 5.92
2787 3051 1.227176 CTTAACCGGGAGTAGCGCC 60.227 63.158 6.32 0.00 0.00 6.53
2788 3052 1.673808 CTTAACCGGGAGTAGCGCCT 61.674 60.000 6.32 0.00 0.00 5.52
2789 3053 1.669999 TTAACCGGGAGTAGCGCCTC 61.670 60.000 6.32 4.10 0.00 4.70
2792 3056 3.823330 CGGGAGTAGCGCCTCGTT 61.823 66.667 2.29 0.00 31.98 3.85
2793 3057 2.577593 GGGAGTAGCGCCTCGTTT 59.422 61.111 2.29 0.00 31.98 3.60
2794 3058 1.079336 GGGAGTAGCGCCTCGTTTT 60.079 57.895 2.29 0.00 31.98 2.43
2795 3059 0.174162 GGGAGTAGCGCCTCGTTTTA 59.826 55.000 2.29 0.00 31.98 1.52
2796 3060 1.202498 GGGAGTAGCGCCTCGTTTTAT 60.202 52.381 2.29 0.00 31.98 1.40
2797 3061 2.125685 GGAGTAGCGCCTCGTTTTATC 58.874 52.381 2.29 0.00 31.98 1.75
2798 3062 2.125685 GAGTAGCGCCTCGTTTTATCC 58.874 52.381 2.29 0.00 0.00 2.59
2799 3063 1.479323 AGTAGCGCCTCGTTTTATCCA 59.521 47.619 2.29 0.00 0.00 3.41
2800 3064 1.859080 GTAGCGCCTCGTTTTATCCAG 59.141 52.381 2.29 0.00 0.00 3.86
2801 3065 1.090052 AGCGCCTCGTTTTATCCAGC 61.090 55.000 2.29 0.00 0.00 4.85
2802 3066 1.636340 CGCCTCGTTTTATCCAGCG 59.364 57.895 0.00 0.00 35.82 5.18
2803 3067 1.352056 GCCTCGTTTTATCCAGCGC 59.648 57.895 0.00 0.00 0.00 5.92
2804 3068 1.090052 GCCTCGTTTTATCCAGCGCT 61.090 55.000 2.64 2.64 0.00 5.92
2805 3069 1.805120 GCCTCGTTTTATCCAGCGCTA 60.805 52.381 10.99 0.00 0.00 4.26
2806 3070 1.859080 CCTCGTTTTATCCAGCGCTAC 59.141 52.381 10.99 0.91 0.00 3.58
2807 3071 2.481449 CCTCGTTTTATCCAGCGCTACT 60.481 50.000 10.99 0.00 0.00 2.57
2808 3072 2.535984 CTCGTTTTATCCAGCGCTACTG 59.464 50.000 10.99 1.22 46.77 2.74
2809 3073 1.004927 CGTTTTATCCAGCGCTACTGC 60.005 52.381 10.99 0.00 45.78 4.40
2811 3075 3.454375 GTTTTATCCAGCGCTACTGCTA 58.546 45.455 10.99 0.00 45.23 3.49
2812 3076 3.812156 TTTATCCAGCGCTACTGCTAA 57.188 42.857 10.99 1.14 45.23 3.09
2813 3077 3.371102 TTATCCAGCGCTACTGCTAAG 57.629 47.619 10.99 0.00 45.23 2.18
2814 3078 0.390860 ATCCAGCGCTACTGCTAAGG 59.609 55.000 10.99 4.36 45.23 2.69
2815 3079 0.970937 TCCAGCGCTACTGCTAAGGT 60.971 55.000 10.99 0.00 45.23 3.50
2816 3080 0.108138 CCAGCGCTACTGCTAAGGTT 60.108 55.000 10.99 0.00 45.23 3.50
2817 3081 1.281899 CAGCGCTACTGCTAAGGTTC 58.718 55.000 10.99 0.00 45.23 3.62
2818 3082 1.134965 CAGCGCTACTGCTAAGGTTCT 60.135 52.381 10.99 0.00 45.23 3.01
2819 3083 1.134965 AGCGCTACTGCTAAGGTTCTG 60.135 52.381 8.99 0.00 45.14 3.02
2820 3084 1.404315 GCGCTACTGCTAAGGTTCTGT 60.404 52.381 0.00 0.00 36.97 3.41
2821 3085 2.263077 CGCTACTGCTAAGGTTCTGTG 58.737 52.381 0.00 0.00 36.97 3.66
2822 3086 2.352814 CGCTACTGCTAAGGTTCTGTGT 60.353 50.000 0.00 0.00 36.97 3.72
2823 3087 3.119602 CGCTACTGCTAAGGTTCTGTGTA 60.120 47.826 0.00 0.00 36.97 2.90
2824 3088 4.440250 CGCTACTGCTAAGGTTCTGTGTAT 60.440 45.833 0.00 0.00 36.97 2.29
2825 3089 5.220989 CGCTACTGCTAAGGTTCTGTGTATA 60.221 44.000 0.00 0.00 36.97 1.47
2826 3090 6.570692 GCTACTGCTAAGGTTCTGTGTATAA 58.429 40.000 0.00 0.00 36.03 0.98
2827 3091 6.697892 GCTACTGCTAAGGTTCTGTGTATAAG 59.302 42.308 0.00 0.00 36.03 1.73
2828 3092 5.978814 ACTGCTAAGGTTCTGTGTATAAGG 58.021 41.667 0.00 0.00 0.00 2.69
2829 3093 5.484290 ACTGCTAAGGTTCTGTGTATAAGGT 59.516 40.000 0.00 0.00 0.00 3.50
2830 3094 6.013639 ACTGCTAAGGTTCTGTGTATAAGGTT 60.014 38.462 0.00 0.00 0.00 3.50
2831 3095 6.775708 TGCTAAGGTTCTGTGTATAAGGTTT 58.224 36.000 0.00 0.00 0.00 3.27
2832 3096 7.228590 TGCTAAGGTTCTGTGTATAAGGTTTT 58.771 34.615 0.00 0.00 0.00 2.43
2833 3097 7.389607 TGCTAAGGTTCTGTGTATAAGGTTTTC 59.610 37.037 0.00 0.00 0.00 2.29
2834 3098 7.148289 GCTAAGGTTCTGTGTATAAGGTTTTCC 60.148 40.741 0.00 0.00 41.05 3.13
2835 3099 5.567430 AGGTTCTGTGTATAAGGTTTTCCC 58.433 41.667 0.00 0.00 41.86 3.97
2837 3101 6.502863 AGGTTCTGTGTATAAGGTTTTCCCTA 59.497 38.462 0.00 0.00 45.47 3.53
2838 3102 6.822170 GGTTCTGTGTATAAGGTTTTCCCTAG 59.178 42.308 0.00 0.00 45.47 3.02
2839 3103 7.392418 GTTCTGTGTATAAGGTTTTCCCTAGT 58.608 38.462 0.00 0.00 45.47 2.57
2840 3104 8.534496 GTTCTGTGTATAAGGTTTTCCCTAGTA 58.466 37.037 0.00 0.00 45.47 1.82
2841 3105 8.302515 TCTGTGTATAAGGTTTTCCCTAGTAG 57.697 38.462 0.00 0.00 45.47 2.57
2842 3106 7.897565 TCTGTGTATAAGGTTTTCCCTAGTAGT 59.102 37.037 0.00 0.00 45.47 2.73
2850 3114 4.246458 GTTTTCCCTAGTAGTGTGCAGAG 58.754 47.826 0.00 0.00 0.00 3.35
2854 3118 1.115467 CTAGTAGTGTGCAGAGGGGG 58.885 60.000 0.00 0.00 0.00 5.40
2889 3153 2.577593 GCGGCGGAGTTTAGAGGT 59.422 61.111 9.78 0.00 0.00 3.85
2893 3157 1.269621 CGGCGGAGTTTAGAGGTATGG 60.270 57.143 0.00 0.00 0.00 2.74
2902 3166 2.246513 TAGAGGTATGGCCGGGGTGT 62.247 60.000 2.18 0.00 43.70 4.16
2904 3168 3.404438 GGTATGGCCGGGGTGTCA 61.404 66.667 2.18 0.00 0.00 3.58
2912 3176 2.264794 CGGGGTGTCAGCCAGTAC 59.735 66.667 22.22 4.32 37.54 2.73
2914 3178 2.264794 GGGTGTCAGCCAGTACGG 59.735 66.667 16.35 0.06 35.40 4.02
2926 3190 1.909781 AGTACGGCGGTGGGAAGAA 60.910 57.895 13.24 0.00 0.00 2.52
2929 3193 1.880819 TACGGCGGTGGGAAGAAGTC 61.881 60.000 13.24 0.00 0.00 3.01
2931 3195 2.342648 GCGGTGGGAAGAAGTCGT 59.657 61.111 0.00 0.00 0.00 4.34
2934 3198 1.812686 CGGTGGGAAGAAGTCGTGGA 61.813 60.000 0.00 0.00 0.00 4.02
2937 3201 1.550976 GTGGGAAGAAGTCGTGGAGAT 59.449 52.381 0.00 0.00 0.00 2.75
2941 3205 2.417515 GGAAGAAGTCGTGGAGATGACC 60.418 54.545 0.00 0.00 38.71 4.02
2944 3208 1.605058 AAGTCGTGGAGATGACCGGG 61.605 60.000 6.32 0.00 38.71 5.73
2961 3341 3.272334 GTGGCAAGGCGGCGATAG 61.272 66.667 12.98 0.00 45.16 2.08
2979 3359 3.365265 CCTTTGGCCACGAGGTGC 61.365 66.667 21.40 0.00 37.19 5.01
2998 3378 1.923909 GGAGGCAGGTGGTTAGGGT 60.924 63.158 0.00 0.00 0.00 4.34
3005 5223 1.920351 CAGGTGGTTAGGGTTGGGTAT 59.080 52.381 0.00 0.00 0.00 2.73
3010 5228 0.253894 GTTAGGGTTGGGTATGCCGT 59.746 55.000 0.00 0.00 34.97 5.68
3013 5231 2.672295 GGTTGGGTATGCCGTGGA 59.328 61.111 0.00 0.00 34.97 4.02
3015 5233 1.451387 GTTGGGTATGCCGTGGAGG 60.451 63.158 0.00 0.00 44.97 4.30
3023 5241 2.683933 GCCGTGGAGGAGGAGGAA 60.684 66.667 0.00 0.00 45.00 3.36
3030 5273 3.688702 CGTGGAGGAGGAGGAAGAAGATA 60.689 52.174 0.00 0.00 0.00 1.98
3032 5275 2.888414 GGAGGAGGAGGAAGAAGATACG 59.112 54.545 0.00 0.00 0.00 3.06
3058 5301 6.096673 AGAAAAAGATAAACAATTGGCGGT 57.903 33.333 10.83 0.00 0.00 5.68
3060 5303 7.836842 AGAAAAAGATAAACAATTGGCGGTAT 58.163 30.769 10.83 1.65 0.00 2.73
3071 5314 2.049063 GCGGTATGCTCCTAGCCG 60.049 66.667 0.00 0.00 41.51 5.52
3079 5322 1.264749 TGCTCCTAGCCGTTGGATGT 61.265 55.000 0.00 0.00 41.51 3.06
3099 5342 3.903714 TGTTGATCGGATGGTCCATAGAT 59.096 43.478 17.60 17.60 35.91 1.98
3107 5350 5.780282 TCGGATGGTCCATAGATAAAGTGAT 59.220 40.000 3.72 0.00 35.91 3.06
3110 5353 7.453393 GGATGGTCCATAGATAAAGTGATTGA 58.547 38.462 3.72 0.00 36.28 2.57
3118 5362 4.442706 AGATAAAGTGATTGACGCGGATT 58.557 39.130 12.47 0.00 0.00 3.01
3120 5364 2.900122 AAGTGATTGACGCGGATTTG 57.100 45.000 12.47 0.00 0.00 2.32
3122 5366 1.732259 AGTGATTGACGCGGATTTGTC 59.268 47.619 12.47 0.00 35.67 3.18
3125 5369 3.369756 GTGATTGACGCGGATTTGTCTTA 59.630 43.478 12.47 0.00 36.10 2.10
3131 5375 5.597806 TGACGCGGATTTGTCTTAAGATAT 58.402 37.500 12.47 3.13 36.10 1.63
3156 5400 4.141981 TGACGTATAAGCGGTCCCAATTTA 60.142 41.667 0.00 0.00 35.98 1.40
3169 5413 6.017440 CGGTCCCAATTTATATTCGTCAATGT 60.017 38.462 0.00 0.00 0.00 2.71
3183 5427 2.681848 GTCAATGTGAAGGGCTCTGATG 59.318 50.000 0.00 0.00 0.00 3.07
3189 5433 4.093743 TGTGAAGGGCTCTGATGTAACTA 58.906 43.478 0.00 0.00 0.00 2.24
3195 5454 3.198872 GGCTCTGATGTAACTACCTTGC 58.801 50.000 0.00 0.00 0.00 4.01
3200 5459 2.496070 TGATGTAACTACCTTGCGAGCT 59.504 45.455 0.00 0.00 0.00 4.09
3206 5465 5.579511 TGTAACTACCTTGCGAGCTAAATTC 59.420 40.000 0.00 0.00 0.00 2.17
3213 5472 4.335315 CCTTGCGAGCTAAATTCATGGTAA 59.665 41.667 0.00 0.00 0.00 2.85
3230 5489 8.922931 TCATGGTAATAGTTGTTGCATATCAT 57.077 30.769 0.00 0.00 0.00 2.45
3249 5508 9.229784 CATATCATTTTATGAGCAACTTGTGTC 57.770 33.333 0.00 0.00 43.53 3.67
3314 5650 5.093236 AGGTCTACATCATATCCAAGGGA 57.907 43.478 0.00 0.00 35.55 4.20
3315 5651 5.476983 AGGTCTACATCATATCCAAGGGAA 58.523 41.667 0.00 0.00 34.34 3.97
3320 5656 4.957296 ACATCATATCCAAGGGAACGTAC 58.043 43.478 0.00 0.00 34.34 3.67
3321 5657 4.202326 ACATCATATCCAAGGGAACGTACC 60.202 45.833 1.11 1.11 34.34 3.34
3366 5703 3.963428 TGTAGCTCAGTTCCCTTTCTC 57.037 47.619 0.00 0.00 0.00 2.87
3367 5704 3.239449 TGTAGCTCAGTTCCCTTTCTCA 58.761 45.455 0.00 0.00 0.00 3.27
3424 5821 8.826710 TCAAATACAAAAACAACAACAACAACA 58.173 25.926 0.00 0.00 0.00 3.33
3469 5868 3.181497 GGTTAGTGGTAACTGCATGCATG 60.181 47.826 22.97 22.70 38.92 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.100631 AAGCACTGGTATCGCGCAC 61.101 57.895 8.75 0.84 0.00 5.34
4 5 2.703409 CAAGCACTGGTATCGCGC 59.297 61.111 0.00 0.00 0.00 6.86
5 6 1.148157 CTCCAAGCACTGGTATCGCG 61.148 60.000 0.00 0.00 46.51 5.87
6 7 0.811616 CCTCCAAGCACTGGTATCGC 60.812 60.000 4.89 0.00 46.51 4.58
8 9 1.474143 GCTCCTCCAAGCACTGGTATC 60.474 57.143 4.89 0.00 46.51 2.24
9 10 0.543749 GCTCCTCCAAGCACTGGTAT 59.456 55.000 4.89 0.00 46.51 2.73
10 11 0.835971 TGCTCCTCCAAGCACTGGTA 60.836 55.000 4.89 0.00 47.00 3.25
11 12 2.149383 TGCTCCTCCAAGCACTGGT 61.149 57.895 4.89 0.00 47.00 4.00
12 13 2.752358 TGCTCCTCCAAGCACTGG 59.248 61.111 0.00 0.00 47.00 4.00
17 18 2.435059 GTCGGTGCTCCTCCAAGC 60.435 66.667 2.85 0.00 42.82 4.01
18 19 2.125912 CGTCGGTGCTCCTCCAAG 60.126 66.667 2.85 0.00 0.00 3.61
19 20 3.691342 CCGTCGGTGCTCCTCCAA 61.691 66.667 2.08 0.00 0.00 3.53
20 21 4.671590 TCCGTCGGTGCTCCTCCA 62.672 66.667 11.88 0.00 0.00 3.86
21 22 3.827898 CTCCGTCGGTGCTCCTCC 61.828 72.222 11.88 0.00 0.00 4.30
22 23 3.827898 CCTCCGTCGGTGCTCCTC 61.828 72.222 11.88 0.00 0.00 3.71
46 47 4.107051 CTTGCGCGGGGAGCTTTG 62.107 66.667 8.83 0.00 45.59 2.77
84 85 4.388499 CACCCGTGACCCTTCCGG 62.388 72.222 0.00 0.00 41.37 5.14
85 86 2.221906 CTACACCCGTGACCCTTCCG 62.222 65.000 0.96 0.00 0.00 4.30
86 87 1.595357 CTACACCCGTGACCCTTCC 59.405 63.158 0.96 0.00 0.00 3.46
87 88 0.901580 TCCTACACCCGTGACCCTTC 60.902 60.000 0.96 0.00 0.00 3.46
88 89 0.472352 TTCCTACACCCGTGACCCTT 60.472 55.000 0.96 0.00 0.00 3.95
89 90 0.903454 CTTCCTACACCCGTGACCCT 60.903 60.000 0.96 0.00 0.00 4.34
90 91 1.595357 CTTCCTACACCCGTGACCC 59.405 63.158 0.96 0.00 0.00 4.46
91 92 1.595357 CCTTCCTACACCCGTGACC 59.405 63.158 0.96 0.00 0.00 4.02
92 93 1.595357 CCCTTCCTACACCCGTGAC 59.405 63.158 0.96 0.00 0.00 3.67
93 94 2.288025 GCCCTTCCTACACCCGTGA 61.288 63.158 0.96 0.00 0.00 4.35
94 95 2.267961 GCCCTTCCTACACCCGTG 59.732 66.667 0.00 0.00 0.00 4.94
95 96 2.122056 AGCCCTTCCTACACCCGT 59.878 61.111 0.00 0.00 0.00 5.28
96 97 1.961180 CTCAGCCCTTCCTACACCCG 61.961 65.000 0.00 0.00 0.00 5.28
97 98 1.627297 CCTCAGCCCTTCCTACACCC 61.627 65.000 0.00 0.00 0.00 4.61
98 99 1.627297 CCCTCAGCCCTTCCTACACC 61.627 65.000 0.00 0.00 0.00 4.16
99 100 1.627297 CCCCTCAGCCCTTCCTACAC 61.627 65.000 0.00 0.00 0.00 2.90
100 101 1.306997 CCCCTCAGCCCTTCCTACA 60.307 63.158 0.00 0.00 0.00 2.74
101 102 2.073101 CCCCCTCAGCCCTTCCTAC 61.073 68.421 0.00 0.00 0.00 3.18
102 103 1.613284 ATCCCCCTCAGCCCTTCCTA 61.613 60.000 0.00 0.00 0.00 2.94
103 104 2.978674 ATCCCCCTCAGCCCTTCCT 61.979 63.158 0.00 0.00 0.00 3.36
104 105 2.368878 ATCCCCCTCAGCCCTTCC 60.369 66.667 0.00 0.00 0.00 3.46
105 106 1.988982 GACATCCCCCTCAGCCCTTC 61.989 65.000 0.00 0.00 0.00 3.46
106 107 2.003548 GACATCCCCCTCAGCCCTT 61.004 63.158 0.00 0.00 0.00 3.95
107 108 2.367512 GACATCCCCCTCAGCCCT 60.368 66.667 0.00 0.00 0.00 5.19
108 109 3.866582 CGACATCCCCCTCAGCCC 61.867 72.222 0.00 0.00 0.00 5.19
109 110 3.866582 CCGACATCCCCCTCAGCC 61.867 72.222 0.00 0.00 0.00 4.85
110 111 4.554036 GCCGACATCCCCCTCAGC 62.554 72.222 0.00 0.00 0.00 4.26
111 112 4.227134 CGCCGACATCCCCCTCAG 62.227 72.222 0.00 0.00 0.00 3.35
119 120 3.401846 GAACGAACGCGCCGACATC 62.402 63.158 24.67 15.92 42.48 3.06
120 121 3.475774 GAACGAACGCGCCGACAT 61.476 61.111 24.67 12.12 42.48 3.06
121 122 4.927444 TGAACGAACGCGCCGACA 62.927 61.111 24.67 19.63 42.48 4.35
122 123 3.401846 GATGAACGAACGCGCCGAC 62.402 63.158 24.67 17.78 42.48 4.79
123 124 3.176578 GATGAACGAACGCGCCGA 61.177 61.111 24.67 6.22 42.48 5.54
124 125 4.537533 CGATGAACGAACGCGCCG 62.538 66.667 17.93 17.93 45.77 6.46
125 126 3.475774 ACGATGAACGAACGCGCC 61.476 61.111 5.73 0.00 45.77 6.53
126 127 2.275202 CACGATGAACGAACGCGC 60.275 61.111 5.73 0.00 45.77 6.86
127 128 2.275202 GCACGATGAACGAACGCG 60.275 61.111 3.53 3.53 45.77 6.01
128 129 2.205595 TTCGCACGATGAACGAACGC 62.206 55.000 0.00 0.00 45.77 4.84
129 130 1.770432 TTCGCACGATGAACGAACG 59.230 52.632 0.00 0.00 45.77 3.95
132 133 0.638242 CGAATTCGCACGATGAACGA 59.362 50.000 15.93 0.00 45.77 3.85
188 189 1.734477 GCGTGATGCACACTCGAGT 60.734 57.895 13.58 13.58 46.24 4.18
189 190 3.075998 GCGTGATGCACACTCGAG 58.924 61.111 11.84 11.84 46.24 4.04
192 193 1.959899 CTTCCGCGTGATGCACACTC 61.960 60.000 4.92 8.08 46.97 3.51
193 194 2.029288 CTTCCGCGTGATGCACACT 61.029 57.895 4.92 0.00 46.97 3.55
194 195 2.317609 ACTTCCGCGTGATGCACAC 61.318 57.895 4.92 8.75 46.97 3.82
195 196 2.030412 ACTTCCGCGTGATGCACA 59.970 55.556 4.92 0.00 46.97 4.57
196 197 2.476051 CACTTCCGCGTGATGCAC 59.524 61.111 4.92 0.00 46.97 4.57
197 198 2.741985 CCACTTCCGCGTGATGCA 60.742 61.111 4.92 0.00 46.97 3.96
198 199 3.499737 CCCACTTCCGCGTGATGC 61.500 66.667 4.92 0.00 37.06 3.91
199 200 3.499737 GCCCACTTCCGCGTGATG 61.500 66.667 4.92 7.12 37.06 3.07
207 208 1.022451 TATTTCGTGCGCCCACTTCC 61.022 55.000 4.18 0.00 39.86 3.46
208 209 0.800012 TTATTTCGTGCGCCCACTTC 59.200 50.000 4.18 0.00 39.86 3.01
209 210 0.802494 CTTATTTCGTGCGCCCACTT 59.198 50.000 4.18 0.00 39.86 3.16
210 211 0.321298 ACTTATTTCGTGCGCCCACT 60.321 50.000 4.18 0.00 39.86 4.00
211 212 0.179200 CACTTATTTCGTGCGCCCAC 60.179 55.000 4.18 0.00 38.62 4.61
212 213 1.302383 CCACTTATTTCGTGCGCCCA 61.302 55.000 4.18 0.00 0.00 5.36
213 214 1.427819 CCACTTATTTCGTGCGCCC 59.572 57.895 4.18 0.00 0.00 6.13
214 215 1.226295 GCCACTTATTTCGTGCGCC 60.226 57.895 4.18 0.00 0.00 6.53
215 216 1.580132 CGCCACTTATTTCGTGCGC 60.580 57.895 0.00 0.00 0.00 6.09
216 217 1.580132 GCGCCACTTATTTCGTGCG 60.580 57.895 0.00 0.00 36.08 5.34
217 218 1.580132 CGCGCCACTTATTTCGTGC 60.580 57.895 0.00 0.00 0.00 5.34
218 219 0.247145 GACGCGCCACTTATTTCGTG 60.247 55.000 5.73 0.00 38.27 4.35
219 220 0.668096 TGACGCGCCACTTATTTCGT 60.668 50.000 5.73 0.00 0.00 3.85
220 221 0.650512 ATGACGCGCCACTTATTTCG 59.349 50.000 5.73 0.00 0.00 3.46
221 222 1.856014 GCATGACGCGCCACTTATTTC 60.856 52.381 5.73 0.00 0.00 2.17
222 223 0.098728 GCATGACGCGCCACTTATTT 59.901 50.000 5.73 0.00 0.00 1.40
223 224 1.721487 GCATGACGCGCCACTTATT 59.279 52.632 5.73 0.00 0.00 1.40
224 225 3.409856 GCATGACGCGCCACTTAT 58.590 55.556 5.73 0.00 0.00 1.73
230 231 4.811761 GAAACGGCATGACGCGCC 62.812 66.667 23.72 6.04 46.62 6.53
249 250 3.259751 GTAGTTTAGCGCGCGGGG 61.260 66.667 33.06 3.70 0.00 5.73
250 251 0.526096 TAAGTAGTTTAGCGCGCGGG 60.526 55.000 33.06 20.05 0.00 6.13
251 252 1.484356 ATAAGTAGTTTAGCGCGCGG 58.516 50.000 33.06 13.66 0.00 6.46
252 253 2.097541 GGAATAAGTAGTTTAGCGCGCG 60.098 50.000 28.44 28.44 0.00 6.86
253 254 2.097541 CGGAATAAGTAGTTTAGCGCGC 60.098 50.000 26.66 26.66 0.00 6.86
254 255 2.097541 GCGGAATAAGTAGTTTAGCGCG 60.098 50.000 0.00 0.00 0.00 6.86
255 256 2.097541 CGCGGAATAAGTAGTTTAGCGC 60.098 50.000 0.00 0.00 38.69 5.92
256 257 3.748107 CGCGGAATAAGTAGTTTAGCG 57.252 47.619 0.00 0.00 39.14 4.26
257 258 3.302286 GCACGCGGAATAAGTAGTTTAGC 60.302 47.826 12.47 0.00 0.00 3.09
258 259 3.861113 TGCACGCGGAATAAGTAGTTTAG 59.139 43.478 12.47 0.00 0.00 1.85
259 260 3.613737 GTGCACGCGGAATAAGTAGTTTA 59.386 43.478 12.47 0.00 0.00 2.01
260 261 2.414138 GTGCACGCGGAATAAGTAGTTT 59.586 45.455 12.47 0.00 0.00 2.66
261 262 1.997606 GTGCACGCGGAATAAGTAGTT 59.002 47.619 12.47 0.00 0.00 2.24
262 263 1.636988 GTGCACGCGGAATAAGTAGT 58.363 50.000 12.47 0.00 0.00 2.73
263 264 0.570734 CGTGCACGCGGAATAAGTAG 59.429 55.000 28.16 0.00 0.00 2.57
264 265 2.656137 CGTGCACGCGGAATAAGTA 58.344 52.632 28.16 0.00 0.00 2.24
265 266 3.470267 CGTGCACGCGGAATAAGT 58.530 55.556 28.16 0.00 0.00 2.24
273 274 3.677340 GCAAAAACCGTGCACGCG 61.677 61.111 33.17 26.37 41.80 6.01
274 275 3.677340 CGCAAAAACCGTGCACGC 61.677 61.111 33.17 16.56 42.33 5.34
275 276 3.677340 GCGCAAAAACCGTGCACG 61.677 61.111 31.77 31.77 42.33 5.34
276 277 3.326981 GGCGCAAAAACCGTGCAC 61.327 61.111 10.83 6.82 42.33 4.57
277 278 2.945398 GAAGGCGCAAAAACCGTGCA 62.945 55.000 10.83 0.00 42.33 4.57
278 279 2.279186 AAGGCGCAAAAACCGTGC 60.279 55.556 10.83 0.00 39.17 5.34
279 280 1.064946 TGAAGGCGCAAAAACCGTG 59.935 52.632 10.83 0.00 0.00 4.94
280 281 1.065109 GTGAAGGCGCAAAAACCGT 59.935 52.632 10.83 0.00 0.00 4.83
281 282 0.589223 TAGTGAAGGCGCAAAAACCG 59.411 50.000 10.83 0.00 0.00 4.44
282 283 2.785713 TTAGTGAAGGCGCAAAAACC 57.214 45.000 10.83 0.00 0.00 3.27
283 284 2.471370 GCTTTAGTGAAGGCGCAAAAAC 59.529 45.455 10.83 1.56 35.82 2.43
284 285 2.738135 GCTTTAGTGAAGGCGCAAAAA 58.262 42.857 10.83 0.00 35.82 1.94
285 286 2.415697 GCTTTAGTGAAGGCGCAAAA 57.584 45.000 10.83 0.00 35.82 2.44
291 292 2.750888 CGGGCGCTTTAGTGAAGGC 61.751 63.158 7.64 0.00 35.82 4.35
292 293 2.106683 CCGGGCGCTTTAGTGAAGG 61.107 63.158 7.64 0.00 35.82 3.46
293 294 1.079405 TCCGGGCGCTTTAGTGAAG 60.079 57.895 7.64 0.00 38.45 3.02
294 295 1.079405 CTCCGGGCGCTTTAGTGAA 60.079 57.895 7.64 0.00 0.00 3.18
295 296 2.577059 CTCCGGGCGCTTTAGTGA 59.423 61.111 7.64 0.00 0.00 3.41
296 297 3.195698 GCTCCGGGCGCTTTAGTG 61.196 66.667 7.64 0.00 0.00 2.74
316 317 2.427410 GGTTTTCTGTGCGCGCAG 60.427 61.111 38.53 38.53 37.81 5.18
317 318 3.959975 GGGTTTTCTGTGCGCGCA 61.960 61.111 33.09 33.09 0.00 6.09
318 319 2.945398 TTTGGGTTTTCTGTGCGCGC 62.945 55.000 27.26 27.26 0.00 6.86
319 320 0.318614 ATTTGGGTTTTCTGTGCGCG 60.319 50.000 0.00 0.00 0.00 6.86
320 321 1.864565 AATTTGGGTTTTCTGTGCGC 58.135 45.000 0.00 0.00 0.00 6.09
321 322 3.247411 GGAAAATTTGGGTTTTCTGTGCG 59.753 43.478 10.73 0.00 43.94 5.34
322 323 4.195416 TGGAAAATTTGGGTTTTCTGTGC 58.805 39.130 10.73 0.00 43.94 4.57
323 324 5.220567 CGTTGGAAAATTTGGGTTTTCTGTG 60.221 40.000 10.73 0.00 43.94 3.66
324 325 4.873259 CGTTGGAAAATTTGGGTTTTCTGT 59.127 37.500 10.73 0.00 43.94 3.41
325 326 4.260579 GCGTTGGAAAATTTGGGTTTTCTG 60.261 41.667 10.73 2.74 43.94 3.02
326 327 3.874543 GCGTTGGAAAATTTGGGTTTTCT 59.125 39.130 10.73 0.00 43.94 2.52
327 328 3.302805 CGCGTTGGAAAATTTGGGTTTTC 60.303 43.478 0.00 4.06 43.82 2.29
328 329 2.609916 CGCGTTGGAAAATTTGGGTTTT 59.390 40.909 0.00 0.00 34.19 2.43
329 330 2.205911 CGCGTTGGAAAATTTGGGTTT 58.794 42.857 0.00 0.00 0.00 3.27
330 331 1.539280 CCGCGTTGGAAAATTTGGGTT 60.539 47.619 4.92 0.00 42.00 4.11
331 332 0.032815 CCGCGTTGGAAAATTTGGGT 59.967 50.000 4.92 0.00 42.00 4.51
332 333 0.032815 ACCGCGTTGGAAAATTTGGG 59.967 50.000 4.92 0.00 42.00 4.12
333 334 1.524776 CAACCGCGTTGGAAAATTTGG 59.475 47.619 4.92 0.00 42.00 3.28
334 335 2.197577 ACAACCGCGTTGGAAAATTTG 58.802 42.857 20.19 6.70 46.50 2.32
335 336 2.588027 ACAACCGCGTTGGAAAATTT 57.412 40.000 20.19 0.00 46.50 1.82
336 337 2.197577 CAACAACCGCGTTGGAAAATT 58.802 42.857 20.19 7.16 46.50 1.82
337 338 1.846541 CAACAACCGCGTTGGAAAAT 58.153 45.000 20.19 2.39 46.50 1.82
338 339 3.330766 CAACAACCGCGTTGGAAAA 57.669 47.368 20.19 0.00 46.50 2.29
344 345 1.852067 GCATCTCCAACAACCGCGTT 61.852 55.000 4.92 0.00 0.00 4.84
345 346 2.325082 GCATCTCCAACAACCGCGT 61.325 57.895 4.92 0.00 0.00 6.01
346 347 1.970917 GAGCATCTCCAACAACCGCG 61.971 60.000 0.00 0.00 0.00 6.46
347 348 1.796796 GAGCATCTCCAACAACCGC 59.203 57.895 0.00 0.00 0.00 5.68
359 360 2.464865 CAGTGTACGCCTAAGAGCATC 58.535 52.381 1.98 0.00 0.00 3.91
360 361 1.137086 CCAGTGTACGCCTAAGAGCAT 59.863 52.381 1.98 0.00 0.00 3.79
361 362 0.530744 CCAGTGTACGCCTAAGAGCA 59.469 55.000 1.98 0.00 0.00 4.26
362 363 0.531200 ACCAGTGTACGCCTAAGAGC 59.469 55.000 1.98 0.00 0.00 4.09
363 364 5.961396 ATATACCAGTGTACGCCTAAGAG 57.039 43.478 1.98 0.00 0.00 2.85
364 365 8.950210 GTTATATATACCAGTGTACGCCTAAGA 58.050 37.037 1.98 0.00 0.00 2.10
365 366 8.186821 GGTTATATATACCAGTGTACGCCTAAG 58.813 40.741 1.98 0.00 35.67 2.18
380 381 4.439289 GGAGGCCGACGTGGTTATATATAC 60.439 50.000 0.00 0.00 41.21 1.47
385 386 0.683828 TGGAGGCCGACGTGGTTATA 60.684 55.000 0.00 0.00 41.21 0.98
386 387 1.546589 TTGGAGGCCGACGTGGTTAT 61.547 55.000 0.00 0.00 41.21 1.89
387 388 1.756408 TTTGGAGGCCGACGTGGTTA 61.756 55.000 0.00 0.00 41.21 2.85
388 389 3.109592 TTTGGAGGCCGACGTGGTT 62.110 57.895 0.00 0.00 41.21 3.67
410 411 0.238817 TGCAAACCGGCGTGAATAAC 59.761 50.000 6.01 0.00 36.28 1.89
411 412 1.169577 ATGCAAACCGGCGTGAATAA 58.830 45.000 6.01 0.00 36.28 1.40
443 444 4.161754 ACAGTACTATAGGAAAGTGGCCAC 59.838 45.833 29.22 29.22 0.00 5.01
463 464 7.041303 TCGATGACTAAGGTATTAGCAGTACAG 60.041 40.741 0.00 0.00 41.91 2.74
470 471 8.328864 CAACTTTTCGATGACTAAGGTATTAGC 58.671 37.037 0.00 0.00 41.91 3.09
482 483 4.152580 GGAACCTCTCAACTTTTCGATGAC 59.847 45.833 0.00 0.00 0.00 3.06
498 499 0.528470 CGACAGACTGGAGGAACCTC 59.472 60.000 11.97 11.97 42.04 3.85
549 552 5.530915 ACCATATATGCATGTTGCTTAACGT 59.469 36.000 10.16 0.00 45.31 3.99
550 553 6.000891 ACCATATATGCATGTTGCTTAACG 57.999 37.500 10.16 0.00 45.31 3.18
551 554 8.099364 ACTACCATATATGCATGTTGCTTAAC 57.901 34.615 10.16 0.00 45.31 2.01
552 555 9.785982 TTACTACCATATATGCATGTTGCTTAA 57.214 29.630 10.16 0.00 45.31 1.85
650 658 3.057033 GGATGCCATTGCTAATTGCTAGG 60.057 47.826 0.00 0.00 43.37 3.02
786 859 5.299782 CGCTCCTCTTTATAGACCAACTACT 59.700 44.000 0.00 0.00 33.62 2.57
788 861 4.583489 CCGCTCCTCTTTATAGACCAACTA 59.417 45.833 0.00 0.00 35.42 2.24
834 919 3.462205 AGGAGGAGTTGGTAACCAAAAGT 59.538 43.478 0.00 0.00 45.73 2.66
835 920 4.072839 GAGGAGGAGTTGGTAACCAAAAG 58.927 47.826 0.00 0.00 45.73 2.27
836 921 3.720002 AGAGGAGGAGTTGGTAACCAAAA 59.280 43.478 0.00 0.00 45.73 2.44
837 922 3.323775 AGAGGAGGAGTTGGTAACCAAA 58.676 45.455 0.00 0.00 45.73 3.28
838 923 2.986050 AGAGGAGGAGTTGGTAACCAA 58.014 47.619 0.00 0.00 41.69 3.67
839 924 2.715763 AGAGGAGGAGTTGGTAACCA 57.284 50.000 0.00 0.00 0.00 3.67
840 925 4.041815 AGAAAAGAGGAGGAGTTGGTAACC 59.958 45.833 0.00 0.00 0.00 2.85
841 926 5.230323 AGAAAAGAGGAGGAGTTGGTAAC 57.770 43.478 0.00 0.00 0.00 2.50
845 930 4.775253 AGACTAGAAAAGAGGAGGAGTTGG 59.225 45.833 0.00 0.00 0.00 3.77
854 939 5.299279 CCTAGAGCAGAGACTAGAAAAGAGG 59.701 48.000 0.00 0.00 38.53 3.69
855 940 6.038271 GTCCTAGAGCAGAGACTAGAAAAGAG 59.962 46.154 0.00 0.00 38.53 2.85
863 952 5.126222 CACAAATGTCCTAGAGCAGAGACTA 59.874 44.000 0.00 0.00 0.00 2.59
902 1000 2.431057 AGTGGTATCGTGGGAGAATGTC 59.569 50.000 0.00 0.00 0.00 3.06
904 1002 3.243771 GGTAGTGGTATCGTGGGAGAATG 60.244 52.174 0.00 0.00 0.00 2.67
922 1020 3.844577 AACTACGTACACTGCTGGTAG 57.155 47.619 0.00 0.00 37.26 3.18
946 1046 4.610605 TGGTTGCTACTGCTAACTACAA 57.389 40.909 0.00 0.00 40.48 2.41
972 1085 5.047188 GCAAGCTAAGAGAAGTACTGGATC 58.953 45.833 0.00 0.00 0.00 3.36
973 1086 4.714308 AGCAAGCTAAGAGAAGTACTGGAT 59.286 41.667 0.00 0.00 0.00 3.41
974 1087 4.090090 AGCAAGCTAAGAGAAGTACTGGA 58.910 43.478 0.00 0.00 0.00 3.86
975 1088 4.464069 AGCAAGCTAAGAGAAGTACTGG 57.536 45.455 0.00 0.00 0.00 4.00
976 1089 6.390721 TGTTAGCAAGCTAAGAGAAGTACTG 58.609 40.000 14.34 0.00 38.95 2.74
977 1090 6.591750 TGTTAGCAAGCTAAGAGAAGTACT 57.408 37.500 14.34 0.00 38.95 2.73
981 1094 5.423015 TCCATGTTAGCAAGCTAAGAGAAG 58.577 41.667 14.34 7.94 38.95 2.85
1073 1192 2.757099 GGAGGCCAGCAACCCATG 60.757 66.667 5.01 0.00 0.00 3.66
1251 1391 1.244019 GCGGGAACAGGTGCATCTTT 61.244 55.000 0.00 0.00 0.00 2.52
1816 1990 3.490759 GAGATGCGGCGGTGTGTG 61.491 66.667 9.78 0.00 0.00 3.82
1872 2046 1.888018 CGGCTCGGACTTCTTGGTA 59.112 57.895 0.00 0.00 0.00 3.25
2034 2238 1.807573 CAAGAAGAGCTCGCCGGTC 60.808 63.158 8.37 2.40 40.43 4.79
2205 2409 1.078356 CAGCTGCTGCACATCCTCT 60.078 57.895 17.73 0.00 42.74 3.69
2409 2613 3.748568 AGAACGTCAAGAAGATGGCTTTC 59.251 43.478 0.00 0.00 37.58 2.62
2475 2679 0.746204 GAGGGGCAGCTTACTTGAGC 60.746 60.000 0.00 0.00 43.02 4.26
2488 2698 2.203126 CTTCATCGCAGGAGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
2489 2699 2.203126 GCTTCATCGCAGGAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
2490 2700 2.587194 CGCTTCATCGCAGGAGGG 60.587 66.667 0.00 0.00 0.00 4.30
2498 2708 0.095245 AAACATCACGCGCTTCATCG 59.905 50.000 5.73 0.00 0.00 3.84
2499 2709 1.906966 CAAAACATCACGCGCTTCATC 59.093 47.619 5.73 0.00 0.00 2.92
2500 2710 1.266718 ACAAAACATCACGCGCTTCAT 59.733 42.857 5.73 0.00 0.00 2.57
2501 2711 0.660488 ACAAAACATCACGCGCTTCA 59.340 45.000 5.73 0.00 0.00 3.02
2502 2712 1.044725 CACAAAACATCACGCGCTTC 58.955 50.000 5.73 0.00 0.00 3.86
2503 2713 0.380378 ACACAAAACATCACGCGCTT 59.620 45.000 5.73 0.00 0.00 4.68
2504 2714 1.222300 TACACAAAACATCACGCGCT 58.778 45.000 5.73 0.00 0.00 5.92
2505 2715 1.904412 CATACACAAAACATCACGCGC 59.096 47.619 5.73 0.00 0.00 6.86
2506 2716 3.181826 ACATACACAAAACATCACGCG 57.818 42.857 3.53 3.53 0.00 6.01
2507 2717 4.381566 GGAAACATACACAAAACATCACGC 59.618 41.667 0.00 0.00 0.00 5.34
2508 2718 5.757886 AGGAAACATACACAAAACATCACG 58.242 37.500 0.00 0.00 0.00 4.35
2509 2719 8.419076 AAAAGGAAACATACACAAAACATCAC 57.581 30.769 0.00 0.00 0.00 3.06
2510 2720 8.474025 AGAAAAGGAAACATACACAAAACATCA 58.526 29.630 0.00 0.00 0.00 3.07
2511 2721 8.871686 AGAAAAGGAAACATACACAAAACATC 57.128 30.769 0.00 0.00 0.00 3.06
2512 2722 9.097257 CAAGAAAAGGAAACATACACAAAACAT 57.903 29.630 0.00 0.00 0.00 2.71
2513 2723 7.064016 GCAAGAAAAGGAAACATACACAAAACA 59.936 33.333 0.00 0.00 0.00 2.83
2514 2724 7.277760 AGCAAGAAAAGGAAACATACACAAAAC 59.722 33.333 0.00 0.00 0.00 2.43
2515 2725 7.327214 AGCAAGAAAAGGAAACATACACAAAA 58.673 30.769 0.00 0.00 0.00 2.44
2516 2726 6.872920 AGCAAGAAAAGGAAACATACACAAA 58.127 32.000 0.00 0.00 0.00 2.83
2517 2727 6.463995 AGCAAGAAAAGGAAACATACACAA 57.536 33.333 0.00 0.00 0.00 3.33
2518 2728 6.206634 CCTAGCAAGAAAAGGAAACATACACA 59.793 38.462 0.00 0.00 31.64 3.72
2519 2729 6.612306 CCTAGCAAGAAAAGGAAACATACAC 58.388 40.000 0.00 0.00 31.64 2.90
2520 2730 5.183140 GCCTAGCAAGAAAAGGAAACATACA 59.817 40.000 0.00 0.00 31.64 2.29
2521 2731 5.416013 AGCCTAGCAAGAAAAGGAAACATAC 59.584 40.000 0.00 0.00 31.64 2.39
2522 2732 5.570320 AGCCTAGCAAGAAAAGGAAACATA 58.430 37.500 0.00 0.00 31.64 2.29
2523 2733 4.411013 AGCCTAGCAAGAAAAGGAAACAT 58.589 39.130 0.00 0.00 31.64 2.71
2524 2734 3.832527 AGCCTAGCAAGAAAAGGAAACA 58.167 40.909 0.00 0.00 31.64 2.83
2525 2735 5.246307 TCTAGCCTAGCAAGAAAAGGAAAC 58.754 41.667 0.00 0.00 31.64 2.78
2526 2736 5.499004 TCTAGCCTAGCAAGAAAAGGAAA 57.501 39.130 0.00 0.00 31.64 3.13
2527 2737 5.499004 TTCTAGCCTAGCAAGAAAAGGAA 57.501 39.130 0.00 0.00 31.64 3.36
2528 2738 5.700402 ATTCTAGCCTAGCAAGAAAAGGA 57.300 39.130 0.00 0.00 31.64 3.36
2529 2739 6.118852 AGAATTCTAGCCTAGCAAGAAAAGG 58.881 40.000 6.06 0.00 0.00 3.11
2530 2740 7.470900 CAAGAATTCTAGCCTAGCAAGAAAAG 58.529 38.462 8.75 0.00 0.00 2.27
2531 2741 6.127897 GCAAGAATTCTAGCCTAGCAAGAAAA 60.128 38.462 8.75 0.00 0.00 2.29
2532 2742 5.355350 GCAAGAATTCTAGCCTAGCAAGAAA 59.645 40.000 8.75 0.00 0.00 2.52
2533 2743 4.878397 GCAAGAATTCTAGCCTAGCAAGAA 59.122 41.667 8.75 3.14 0.00 2.52
2534 2744 4.163078 AGCAAGAATTCTAGCCTAGCAAGA 59.837 41.667 8.75 0.00 0.00 3.02
2535 2745 4.450053 AGCAAGAATTCTAGCCTAGCAAG 58.550 43.478 8.75 0.00 0.00 4.01
2536 2746 4.163078 AGAGCAAGAATTCTAGCCTAGCAA 59.837 41.667 8.75 0.00 0.00 3.91
2537 2747 3.708631 AGAGCAAGAATTCTAGCCTAGCA 59.291 43.478 8.75 0.00 0.00 3.49
2538 2748 4.335400 AGAGCAAGAATTCTAGCCTAGC 57.665 45.455 8.75 6.61 0.00 3.42
2539 2749 5.669477 ACAAGAGCAAGAATTCTAGCCTAG 58.331 41.667 8.75 0.00 0.00 3.02
2540 2750 5.683876 ACAAGAGCAAGAATTCTAGCCTA 57.316 39.130 8.75 0.00 0.00 3.93
2541 2751 4.566426 ACAAGAGCAAGAATTCTAGCCT 57.434 40.909 8.75 5.32 0.00 4.58
2542 2752 4.095632 GGAACAAGAGCAAGAATTCTAGCC 59.904 45.833 8.75 0.17 0.00 3.93
2543 2753 4.697352 TGGAACAAGAGCAAGAATTCTAGC 59.303 41.667 8.75 0.00 31.92 3.42
2578 2788 5.397240 GCGCCAAATACACGAAATATTTACC 59.603 40.000 0.00 0.00 32.27 2.85
2579 2789 5.397240 GGCGCCAAATACACGAAATATTTAC 59.603 40.000 24.80 0.00 32.27 2.01
2590 2812 0.663153 GAGATGGGCGCCAAATACAC 59.337 55.000 30.85 9.47 36.95 2.90
2592 2814 0.814010 ACGAGATGGGCGCCAAATAC 60.814 55.000 30.85 13.28 36.95 1.89
2596 2818 1.022451 GTTTACGAGATGGGCGCCAA 61.022 55.000 30.85 20.37 36.95 4.52
2598 2820 1.022451 TTGTTTACGAGATGGGCGCC 61.022 55.000 21.18 21.18 0.00 6.53
2609 2835 8.308320 GCAAAACCGATACAAATATTGTTTACG 58.692 33.333 0.54 5.53 42.22 3.18
2650 2887 1.001068 TCGTGCAAAAGGTGACCGATA 59.999 47.619 0.00 0.00 0.00 2.92
2651 2888 0.250124 TCGTGCAAAAGGTGACCGAT 60.250 50.000 0.00 0.00 0.00 4.18
2653 2890 1.569493 CTCGTGCAAAAGGTGACCG 59.431 57.895 0.00 0.00 0.00 4.79
2660 2902 1.577328 ATGCCGTCCTCGTGCAAAAG 61.577 55.000 0.00 0.00 42.64 2.27
2670 2934 3.474570 GGCTCCTCATGCCGTCCT 61.475 66.667 0.00 0.00 41.03 3.85
2718 2982 2.186903 CCCGCTCGTACATGGCTT 59.813 61.111 0.00 0.00 0.00 4.35
2740 3004 3.631046 CTCCTGCCGGCTATCCCC 61.631 72.222 29.70 0.00 0.00 4.81
2742 3006 4.671569 CGCTCCTGCCGGCTATCC 62.672 72.222 29.70 11.10 35.36 2.59
2752 3016 0.038159 AAGTTTCGGACTCGCTCCTG 60.038 55.000 0.00 0.00 37.72 3.86
2753 3017 1.542492 TAAGTTTCGGACTCGCTCCT 58.458 50.000 0.00 0.00 37.72 3.69
2755 3019 1.991264 GGTTAAGTTTCGGACTCGCTC 59.009 52.381 0.00 0.00 37.72 5.03
2764 3028 2.265683 GCTACTCCCGGTTAAGTTTCG 58.734 52.381 0.00 0.00 0.00 3.46
2779 3043 1.479323 TGGATAAAACGAGGCGCTACT 59.521 47.619 7.64 0.00 0.00 2.57
2780 3044 1.859080 CTGGATAAAACGAGGCGCTAC 59.141 52.381 7.64 0.15 0.00 3.58
2781 3045 1.805120 GCTGGATAAAACGAGGCGCTA 60.805 52.381 7.64 0.00 0.00 4.26
2782 3046 1.090052 GCTGGATAAAACGAGGCGCT 61.090 55.000 7.64 0.00 0.00 5.92
2783 3047 1.352056 GCTGGATAAAACGAGGCGC 59.648 57.895 0.00 0.00 0.00 6.53
2784 3048 1.636340 CGCTGGATAAAACGAGGCG 59.364 57.895 0.00 0.00 35.54 5.52
2786 3050 1.859080 GTAGCGCTGGATAAAACGAGG 59.141 52.381 22.90 0.00 0.00 4.63
2787 3051 2.535984 CAGTAGCGCTGGATAAAACGAG 59.464 50.000 22.90 2.82 41.42 4.18
2788 3052 2.536365 CAGTAGCGCTGGATAAAACGA 58.464 47.619 22.90 0.00 41.42 3.85
2789 3053 1.004927 GCAGTAGCGCTGGATAAAACG 60.005 52.381 22.90 6.00 45.14 3.60
2790 3054 2.739293 GCAGTAGCGCTGGATAAAAC 57.261 50.000 22.90 8.32 45.14 2.43
2802 3066 3.320673 ACACAGAACCTTAGCAGTAGC 57.679 47.619 0.00 0.00 42.56 3.58
2803 3067 7.147880 ACCTTATACACAGAACCTTAGCAGTAG 60.148 40.741 0.00 0.00 0.00 2.57
2804 3068 6.666546 ACCTTATACACAGAACCTTAGCAGTA 59.333 38.462 0.00 0.00 0.00 2.74
2805 3069 5.484290 ACCTTATACACAGAACCTTAGCAGT 59.516 40.000 0.00 0.00 0.00 4.40
2806 3070 5.978814 ACCTTATACACAGAACCTTAGCAG 58.021 41.667 0.00 0.00 0.00 4.24
2807 3071 6.368779 AACCTTATACACAGAACCTTAGCA 57.631 37.500 0.00 0.00 0.00 3.49
2808 3072 7.148289 GGAAAACCTTATACACAGAACCTTAGC 60.148 40.741 0.00 0.00 0.00 3.09
2809 3073 7.336176 GGGAAAACCTTATACACAGAACCTTAG 59.664 40.741 0.00 0.00 35.85 2.18
2810 3074 7.170277 GGGAAAACCTTATACACAGAACCTTA 58.830 38.462 0.00 0.00 35.85 2.69
2811 3075 6.008331 GGGAAAACCTTATACACAGAACCTT 58.992 40.000 0.00 0.00 35.85 3.50
2812 3076 5.567430 GGGAAAACCTTATACACAGAACCT 58.433 41.667 0.00 0.00 35.85 3.50
2813 3077 5.892160 GGGAAAACCTTATACACAGAACC 57.108 43.478 0.00 0.00 35.85 3.62
2827 3091 3.007614 TCTGCACACTACTAGGGAAAACC 59.992 47.826 0.00 0.00 40.67 3.27
2828 3092 4.246458 CTCTGCACACTACTAGGGAAAAC 58.754 47.826 0.00 0.00 0.00 2.43
2829 3093 3.260884 CCTCTGCACACTACTAGGGAAAA 59.739 47.826 0.00 0.00 0.00 2.29
2830 3094 2.832129 CCTCTGCACACTACTAGGGAAA 59.168 50.000 0.00 0.00 0.00 3.13
2831 3095 2.457598 CCTCTGCACACTACTAGGGAA 58.542 52.381 0.00 0.00 0.00 3.97
2832 3096 1.342076 CCCTCTGCACACTACTAGGGA 60.342 57.143 0.00 0.00 45.53 4.20
2833 3097 1.115467 CCCTCTGCACACTACTAGGG 58.885 60.000 0.00 0.00 37.90 3.53
2834 3098 1.115467 CCCCTCTGCACACTACTAGG 58.885 60.000 0.00 0.00 0.00 3.02
2835 3099 1.115467 CCCCCTCTGCACACTACTAG 58.885 60.000 0.00 0.00 0.00 2.57
2836 3100 0.976073 GCCCCCTCTGCACACTACTA 60.976 60.000 0.00 0.00 0.00 1.82
2837 3101 2.294078 GCCCCCTCTGCACACTACT 61.294 63.158 0.00 0.00 0.00 2.57
2838 3102 2.269241 GCCCCCTCTGCACACTAC 59.731 66.667 0.00 0.00 0.00 2.73
2839 3103 3.390521 CGCCCCCTCTGCACACTA 61.391 66.667 0.00 0.00 0.00 2.74
2872 3136 0.388294 ATACCTCTAAACTCCGCCGC 59.612 55.000 0.00 0.00 0.00 6.53
2873 3137 1.269621 CCATACCTCTAAACTCCGCCG 60.270 57.143 0.00 0.00 0.00 6.46
2875 3139 1.540580 GGCCATACCTCTAAACTCCGC 60.541 57.143 0.00 0.00 34.51 5.54
2877 3141 1.070289 CCGGCCATACCTCTAAACTCC 59.930 57.143 2.24 0.00 35.61 3.85
2879 3143 1.129058 CCCGGCCATACCTCTAAACT 58.871 55.000 2.24 0.00 35.61 2.66
2881 3145 0.326808 ACCCCGGCCATACCTCTAAA 60.327 55.000 2.24 0.00 35.61 1.85
2889 3153 3.792736 GCTGACACCCCGGCCATA 61.793 66.667 2.24 0.00 32.43 2.74
2907 3171 2.125673 CTTCCCACCGCCGTACTG 60.126 66.667 0.00 0.00 0.00 2.74
2912 3176 2.434359 GACTTCTTCCCACCGCCG 60.434 66.667 0.00 0.00 0.00 6.46
2914 3178 2.027625 CACGACTTCTTCCCACCGC 61.028 63.158 0.00 0.00 0.00 5.68
2915 3179 1.374252 CCACGACTTCTTCCCACCG 60.374 63.158 0.00 0.00 0.00 4.94
2926 3190 2.052690 CCCGGTCATCTCCACGACT 61.053 63.158 0.00 0.00 32.57 4.18
2929 3193 2.184322 CACCCGGTCATCTCCACG 59.816 66.667 0.00 0.00 0.00 4.94
2931 3195 3.399181 GCCACCCGGTCATCTCCA 61.399 66.667 0.00 0.00 33.28 3.86
2934 3198 2.671070 CTTGCCACCCGGTCATCT 59.329 61.111 0.00 0.00 33.28 2.90
2944 3208 3.272334 CTATCGCCGCCTTGCCAC 61.272 66.667 0.00 0.00 0.00 5.01
2979 3359 2.584608 CCTAACCACCTGCCTCCG 59.415 66.667 0.00 0.00 0.00 4.63
2989 3369 0.626916 GGCATACCCAACCCTAACCA 59.373 55.000 0.00 0.00 0.00 3.67
2998 3378 1.613928 TCCTCCACGGCATACCCAA 60.614 57.895 0.00 0.00 0.00 4.12
3005 5223 3.539593 TTCCTCCTCCTCCACGGCA 62.540 63.158 0.00 0.00 0.00 5.69
3010 5228 3.688702 CGTATCTTCTTCCTCCTCCTCCA 60.689 52.174 0.00 0.00 0.00 3.86
3013 5231 2.425102 CCCGTATCTTCTTCCTCCTCCT 60.425 54.545 0.00 0.00 0.00 3.69
3015 5233 2.888414 CTCCCGTATCTTCTTCCTCCTC 59.112 54.545 0.00 0.00 0.00 3.71
3023 5241 8.319146 TGTTTATCTTTTTCTCCCGTATCTTCT 58.681 33.333 0.00 0.00 0.00 2.85
3030 5273 6.687604 CCAATTGTTTATCTTTTTCTCCCGT 58.312 36.000 4.43 0.00 0.00 5.28
3032 5275 5.576774 CGCCAATTGTTTATCTTTTTCTCCC 59.423 40.000 4.43 0.00 0.00 4.30
3058 5301 1.344438 CATCCAACGGCTAGGAGCATA 59.656 52.381 0.21 0.00 44.75 3.14
3060 5303 1.264749 ACATCCAACGGCTAGGAGCA 61.265 55.000 0.21 0.00 44.75 4.26
3071 5314 2.614057 GACCATCCGATCAACATCCAAC 59.386 50.000 0.00 0.00 0.00 3.77
3079 5322 6.270000 ACTTTATCTATGGACCATCCGATCAA 59.730 38.462 11.17 10.72 40.17 2.57
3099 5342 3.749088 ACAAATCCGCGTCAATCACTTTA 59.251 39.130 4.92 0.00 0.00 1.85
3107 5350 3.655486 TCTTAAGACAAATCCGCGTCAA 58.345 40.909 4.92 0.00 34.48 3.18
3110 5353 7.328737 GTCATATATCTTAAGACAAATCCGCGT 59.671 37.037 7.48 0.00 0.00 6.01
3120 5364 9.435802 CCGCTTATACGTCATATATCTTAAGAC 57.564 37.037 7.48 0.00 0.00 3.01
3122 5366 9.435802 GACCGCTTATACGTCATATATCTTAAG 57.564 37.037 0.00 0.00 0.00 1.85
3125 5369 6.183360 GGGACCGCTTATACGTCATATATCTT 60.183 42.308 0.00 0.00 0.00 2.40
3131 5375 2.585330 TGGGACCGCTTATACGTCATA 58.415 47.619 0.00 0.00 0.00 2.15
3142 5386 4.062991 GACGAATATAAATTGGGACCGCT 58.937 43.478 0.00 0.00 0.00 5.52
3144 5388 5.994887 TTGACGAATATAAATTGGGACCG 57.005 39.130 0.00 0.00 0.00 4.79
3156 5400 4.130118 GAGCCCTTCACATTGACGAATAT 58.870 43.478 0.00 0.00 0.00 1.28
3169 5413 3.451178 GGTAGTTACATCAGAGCCCTTCA 59.549 47.826 0.00 0.00 0.00 3.02
3183 5427 5.579511 TGAATTTAGCTCGCAAGGTAGTTAC 59.420 40.000 0.00 0.00 36.85 2.50
3189 5433 2.684881 CCATGAATTTAGCTCGCAAGGT 59.315 45.455 0.00 0.00 37.01 3.50
3195 5454 8.142994 ACAACTATTACCATGAATTTAGCTCG 57.857 34.615 0.00 0.00 0.00 5.03
3206 5465 9.970395 AAATGATATGCAACAACTATTACCATG 57.030 29.630 0.00 0.00 0.00 3.66
3213 5472 9.903682 GCTCATAAAATGATATGCAACAACTAT 57.096 29.630 0.00 0.00 38.85 2.12
3230 5489 5.065346 TGTTCGACACAAGTTGCTCATAAAA 59.935 36.000 1.81 0.00 29.87 1.52
3233 5492 3.723260 TGTTCGACACAAGTTGCTCATA 58.277 40.909 1.81 0.00 29.87 2.15
3249 5508 4.442733 ACTTGTTGTTGTTGTTGTTGTTCG 59.557 37.500 0.00 0.00 0.00 3.95
3289 5625 5.307976 CCCTTGGATATGATGTAGACCTTCA 59.692 44.000 0.00 0.00 0.00 3.02
3291 5627 5.476983 TCCCTTGGATATGATGTAGACCTT 58.523 41.667 0.00 0.00 0.00 3.50
3298 5634 4.202326 GGTACGTTCCCTTGGATATGATGT 60.202 45.833 0.00 0.00 0.00 3.06
3404 5801 8.184192 TCAATTTGTTGTTGTTGTTGTTTTTGT 58.816 25.926 0.00 0.00 0.00 2.83
3406 5803 7.859875 CCTCAATTTGTTGTTGTTGTTGTTTTT 59.140 29.630 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.