Multiple sequence alignment - TraesCS2D01G424400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G424400 chr2D 100.000 3656 0 0 1 3656 537319651 537323306 0.000000e+00 6752.0
1 TraesCS2D01G424400 chr2D 95.903 952 39 0 2705 3656 537325541 537324590 0.000000e+00 1543.0
2 TraesCS2D01G424400 chr2A 90.975 1795 121 31 940 2708 679917358 679919137 0.000000e+00 2379.0
3 TraesCS2D01G424400 chr2A 81.683 202 34 3 674 873 679916709 679916909 8.120000e-37 165.0
4 TraesCS2D01G424400 chr7A 94.013 952 51 1 2705 3656 155655565 155656510 0.000000e+00 1437.0
5 TraesCS2D01G424400 chr6B 93.082 954 65 1 2703 3656 13671639 13670687 0.000000e+00 1395.0
6 TraesCS2D01G424400 chr6B 80.822 73 10 3 2267 2337 70756389 70756319 2.000000e-03 54.7
7 TraesCS2D01G424400 chr5D 93.006 958 61 3 2705 3656 411726445 411725488 0.000000e+00 1393.0
8 TraesCS2D01G424400 chr5D 92.025 953 75 1 2705 3656 515577783 515576831 0.000000e+00 1338.0
9 TraesCS2D01G424400 chr5D 91.597 952 76 1 2705 3656 12056087 12057034 0.000000e+00 1312.0
10 TraesCS2D01G424400 chr5D 91.492 952 81 0 2705 3656 551251294 551250343 0.000000e+00 1310.0
11 TraesCS2D01G424400 chr3A 91.772 948 76 1 2709 3656 594985519 594984574 0.000000e+00 1317.0
12 TraesCS2D01G424400 chr3D 91.314 944 78 3 2717 3656 486794552 486793609 0.000000e+00 1286.0
13 TraesCS2D01G424400 chr2B 91.884 727 43 9 1984 2698 639429177 639429899 0.000000e+00 1002.0
14 TraesCS2D01G424400 chr2B 91.644 730 47 7 1984 2701 639435564 639436291 0.000000e+00 998.0
15 TraesCS2D01G424400 chr2B 91.542 733 43 11 1984 2702 639446051 639446778 0.000000e+00 992.0
16 TraesCS2D01G424400 chr2B 90.984 732 48 10 1984 2701 639450101 639450828 0.000000e+00 970.0
17 TraesCS2D01G424400 chr2B 92.262 504 35 3 1479 1981 639428279 639428779 0.000000e+00 712.0
18 TraesCS2D01G424400 chr2B 91.468 504 39 4 1479 1981 639449200 639449700 0.000000e+00 689.0
19 TraesCS2D01G424400 chr2B 90.675 504 43 3 1479 1981 639445131 639445631 0.000000e+00 667.0
20 TraesCS2D01G424400 chr2B 91.579 475 36 3 1508 1981 639455416 639455887 0.000000e+00 652.0
21 TraesCS2D01G424400 chr2B 91.083 471 31 5 990 1449 639444661 639445131 8.620000e-176 627.0
22 TraesCS2D01G424400 chr2B 90.870 471 32 6 990 1449 639448730 639449200 4.010000e-174 621.0
23 TraesCS2D01G424400 chr2B 90.486 473 34 7 988 1449 639427807 639428279 6.710000e-172 614.0
24 TraesCS2D01G424400 chr2B 90.171 468 31 6 988 1449 639434228 639434686 2.430000e-166 595.0
25 TraesCS2D01G424400 chr2B 90.132 456 40 4 1479 1933 639434686 639435137 4.070000e-164 588.0
26 TraesCS2D01G424400 chr2B 82.841 542 55 21 165 701 639426972 639427480 5.570000e-123 451.0
27 TraesCS2D01G424400 chr2B 87.166 374 37 7 211 582 639433456 639433820 7.300000e-112 414.0
28 TraesCS2D01G424400 chr2B 88.119 303 26 9 211 510 639454206 639454501 5.810000e-93 351.0
29 TraesCS2D01G424400 chr2B 88.811 286 18 4 988 1265 639454967 639455246 4.520000e-89 339.0
30 TraesCS2D01G424400 chr2B 85.849 318 37 7 165 478 639402550 639402863 7.570000e-87 331.0
31 TraesCS2D01G424400 chr2B 87.200 250 25 6 742 990 639433926 639434169 1.000000e-70 278.0
32 TraesCS2D01G424400 chr2B 86.747 249 29 2 742 990 639448428 639448672 1.290000e-69 274.0
33 TraesCS2D01G424400 chr2B 94.969 159 5 3 1294 1449 639455242 639455400 2.820000e-61 246.0
34 TraesCS2D01G424400 chr4B 81.579 494 81 7 2207 2693 539495957 539496447 2.050000e-107 399.0
35 TraesCS2D01G424400 chr4B 79.202 351 57 7 1054 1390 539479137 539479485 2.840000e-56 230.0
36 TraesCS2D01G424400 chr4A 83.274 281 36 5 1054 1330 31169731 31169458 7.840000e-62 248.0
37 TraesCS2D01G424400 chr4D 81.560 282 40 6 1054 1330 437284990 437285264 4.750000e-54 222.0
38 TraesCS2D01G424400 chr6D 82.192 73 9 3 2267 2337 34296562 34296492 3.940000e-05 60.2
39 TraesCS2D01G424400 chr6A 80.822 73 10 3 2267 2337 38446423 38446353 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G424400 chr2D 537319651 537323306 3655 False 6752.000000 6752 100.000000 1 3656 1 chr2D.!!$F1 3655
1 TraesCS2D01G424400 chr2D 537324590 537325541 951 True 1543.000000 1543 95.903000 2705 3656 1 chr2D.!!$R1 951
2 TraesCS2D01G424400 chr2A 679916709 679919137 2428 False 1272.000000 2379 86.329000 674 2708 2 chr2A.!!$F1 2034
3 TraesCS2D01G424400 chr7A 155655565 155656510 945 False 1437.000000 1437 94.013000 2705 3656 1 chr7A.!!$F1 951
4 TraesCS2D01G424400 chr6B 13670687 13671639 952 True 1395.000000 1395 93.082000 2703 3656 1 chr6B.!!$R1 953
5 TraesCS2D01G424400 chr5D 411725488 411726445 957 True 1393.000000 1393 93.006000 2705 3656 1 chr5D.!!$R1 951
6 TraesCS2D01G424400 chr5D 515576831 515577783 952 True 1338.000000 1338 92.025000 2705 3656 1 chr5D.!!$R2 951
7 TraesCS2D01G424400 chr5D 12056087 12057034 947 False 1312.000000 1312 91.597000 2705 3656 1 chr5D.!!$F1 951
8 TraesCS2D01G424400 chr5D 551250343 551251294 951 True 1310.000000 1310 91.492000 2705 3656 1 chr5D.!!$R3 951
9 TraesCS2D01G424400 chr3A 594984574 594985519 945 True 1317.000000 1317 91.772000 2709 3656 1 chr3A.!!$R1 947
10 TraesCS2D01G424400 chr3D 486793609 486794552 943 True 1286.000000 1286 91.314000 2717 3656 1 chr3D.!!$R1 939
11 TraesCS2D01G424400 chr2B 639426972 639436291 9319 False 628.000000 1002 89.309556 165 2701 9 chr2B.!!$F2 2536
12 TraesCS2D01G424400 chr2B 639444661 639455887 11226 False 584.363636 992 90.622455 211 2702 11 chr2B.!!$F3 2491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 4002 0.037326 GTGTGGGTGCTCGATTGAGA 60.037 55.0 14.59 0.0 45.57 3.27 F
1518 5080 0.243907 AACTCGAGATGGTGGACGTG 59.756 55.0 21.68 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 5477 0.250209 ACTGACAACTCCAGCTGCTG 60.250 55.000 22.44 22.44 35.14 4.41 R
3434 16051 2.095263 ACAATAGCAATGCGTGTCCAAC 60.095 45.455 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.295407 CTCCTAATCGGGAGGGCA 57.705 61.111 2.84 0.00 46.63 5.36
19 20 2.053618 CTCCTAATCGGGAGGGCAG 58.946 63.158 2.84 0.00 46.63 4.85
21 22 2.443394 CCTAATCGGGAGGGCAGCA 61.443 63.158 0.00 0.00 0.00 4.41
22 23 1.526887 CTAATCGGGAGGGCAGCAA 59.473 57.895 0.00 0.00 0.00 3.91
23 24 0.107214 CTAATCGGGAGGGCAGCAAA 60.107 55.000 0.00 0.00 0.00 3.68
28 29 4.426112 GGAGGGCAGCAAAAGCGC 62.426 66.667 0.00 0.00 44.31 5.92
34 35 3.659092 CAGCAAAAGCGCCGGTCA 61.659 61.111 2.29 0.00 0.00 4.02
35 36 3.357079 AGCAAAAGCGCCGGTCAG 61.357 61.111 2.29 0.00 0.00 3.51
47 48 4.500116 GGTCAGCGCTCTCCGGAC 62.500 72.222 7.13 12.01 37.44 4.79
48 49 4.500116 GTCAGCGCTCTCCGGACC 62.500 72.222 7.13 0.00 37.44 4.46
52 53 4.632458 GCGCTCTCCGGACCGATC 62.632 72.222 17.49 2.13 37.44 3.69
53 54 2.902846 CGCTCTCCGGACCGATCT 60.903 66.667 17.49 0.00 0.00 2.75
55 56 1.527380 GCTCTCCGGACCGATCTCT 60.527 63.158 17.49 0.00 0.00 3.10
56 57 1.104577 GCTCTCCGGACCGATCTCTT 61.105 60.000 17.49 0.00 0.00 2.85
57 58 0.665835 CTCTCCGGACCGATCTCTTG 59.334 60.000 17.49 0.00 0.00 3.02
59 60 0.818296 CTCCGGACCGATCTCTTGTT 59.182 55.000 17.49 0.00 0.00 2.83
60 61 1.204941 CTCCGGACCGATCTCTTGTTT 59.795 52.381 17.49 0.00 0.00 2.83
61 62 1.067142 TCCGGACCGATCTCTTGTTTG 60.067 52.381 17.49 0.00 0.00 2.93
62 63 0.721718 CGGACCGATCTCTTGTTTGC 59.278 55.000 8.64 0.00 0.00 3.68
63 64 1.808411 GGACCGATCTCTTGTTTGCA 58.192 50.000 0.00 0.00 0.00 4.08
64 65 2.151202 GGACCGATCTCTTGTTTGCAA 58.849 47.619 0.00 0.00 0.00 4.08
65 66 2.552315 GGACCGATCTCTTGTTTGCAAA 59.448 45.455 8.05 8.05 33.73 3.68
66 67 3.191371 GGACCGATCTCTTGTTTGCAAAT 59.809 43.478 16.21 0.00 33.73 2.32
67 68 4.321230 GGACCGATCTCTTGTTTGCAAATT 60.321 41.667 16.21 0.00 33.73 1.82
68 69 4.798574 ACCGATCTCTTGTTTGCAAATTC 58.201 39.130 16.21 3.86 33.73 2.17
69 70 4.278170 ACCGATCTCTTGTTTGCAAATTCA 59.722 37.500 16.21 6.78 33.73 2.57
70 71 5.221224 ACCGATCTCTTGTTTGCAAATTCAA 60.221 36.000 16.21 14.23 33.73 2.69
71 72 5.691305 CCGATCTCTTGTTTGCAAATTCAAA 59.309 36.000 16.21 7.19 33.73 2.69
73 74 7.278629 CGATCTCTTGTTTGCAAATTCAAAAG 58.721 34.615 16.21 11.70 37.65 2.27
74 75 7.043192 CGATCTCTTGTTTGCAAATTCAAAAGT 60.043 33.333 16.21 3.54 37.65 2.66
75 76 7.903995 TCTCTTGTTTGCAAATTCAAAAGTT 57.096 28.000 16.21 0.00 37.65 2.66
76 77 7.741198 TCTCTTGTTTGCAAATTCAAAAGTTG 58.259 30.769 16.21 4.14 37.65 3.16
77 78 7.387397 TCTCTTGTTTGCAAATTCAAAAGTTGT 59.613 29.630 16.21 0.00 38.61 3.32
79 80 8.993121 TCTTGTTTGCAAATTCAAAAGTTGTTA 58.007 25.926 16.21 0.00 38.61 2.41
80 81 8.941127 TTGTTTGCAAATTCAAAAGTTGTTAC 57.059 26.923 16.21 0.00 38.61 2.50
82 83 7.116376 TGTTTGCAAATTCAAAAGTTGTTACGA 59.884 29.630 16.21 0.00 38.61 3.43
83 84 7.582435 TTGCAAATTCAAAAGTTGTTACGAA 57.418 28.000 0.00 0.00 38.61 3.85
84 85 7.763172 TGCAAATTCAAAAGTTGTTACGAAT 57.237 28.000 0.00 0.00 38.61 3.34
85 86 8.190888 TGCAAATTCAAAAGTTGTTACGAATT 57.809 26.923 0.00 0.00 38.61 2.17
86 87 8.660373 TGCAAATTCAAAAGTTGTTACGAATTT 58.340 25.926 0.00 0.00 41.36 1.82
87 88 9.142993 GCAAATTCAAAAGTTGTTACGAATTTC 57.857 29.630 0.00 0.00 39.68 2.17
91 92 9.796120 ATTCAAAAGTTGTTACGAATTTCAAGA 57.204 25.926 0.00 0.00 0.00 3.02
92 93 9.627395 TTCAAAAGTTGTTACGAATTTCAAGAA 57.373 25.926 0.00 2.35 0.00 2.52
96 97 9.581099 AAAGTTGTTACGAATTTCAAGAAATGT 57.419 25.926 8.66 6.34 40.57 2.71
97 98 9.581099 AAGTTGTTACGAATTTCAAGAAATGTT 57.419 25.926 8.66 0.00 40.57 2.71
99 100 7.830217 TGTTACGAATTTCAAGAAATGTTCG 57.170 32.000 20.73 20.73 43.12 3.95
101 102 4.854399 ACGAATTTCAAGAAATGTTCGCA 58.146 34.783 21.62 0.00 42.13 5.10
102 103 4.675114 ACGAATTTCAAGAAATGTTCGCAC 59.325 37.500 21.62 5.75 42.13 5.34
103 104 4.674662 CGAATTTCAAGAAATGTTCGCACA 59.325 37.500 14.47 0.00 40.57 4.57
104 105 5.386323 CGAATTTCAAGAAATGTTCGCACAC 60.386 40.000 14.47 0.00 40.57 3.82
105 106 4.630894 TTTCAAGAAATGTTCGCACACT 57.369 36.364 0.00 0.00 35.03 3.55
107 108 3.202097 TCAAGAAATGTTCGCACACTCA 58.798 40.909 0.00 0.00 35.03 3.41
109 110 4.095632 TCAAGAAATGTTCGCACACTCAAA 59.904 37.500 0.00 0.00 35.03 2.69
110 111 4.630894 AGAAATGTTCGCACACTCAAAA 57.369 36.364 0.00 0.00 35.03 2.44
111 112 4.601019 AGAAATGTTCGCACACTCAAAAG 58.399 39.130 0.00 0.00 35.03 2.27
112 113 4.335315 AGAAATGTTCGCACACTCAAAAGA 59.665 37.500 0.00 0.00 35.03 2.52
113 114 4.836125 AATGTTCGCACACTCAAAAGAT 57.164 36.364 0.00 0.00 35.03 2.40
114 115 3.607422 TGTTCGCACACTCAAAAGATG 57.393 42.857 0.00 0.00 0.00 2.90
115 116 3.202097 TGTTCGCACACTCAAAAGATGA 58.798 40.909 0.00 0.00 36.38 2.92
116 117 3.002246 TGTTCGCACACTCAAAAGATGAC 59.998 43.478 0.00 0.00 33.47 3.06
117 118 3.111853 TCGCACACTCAAAAGATGACT 57.888 42.857 0.00 0.00 33.47 3.41
118 119 2.802247 TCGCACACTCAAAAGATGACTG 59.198 45.455 0.00 0.00 33.47 3.51
119 120 2.663879 CGCACACTCAAAAGATGACTGC 60.664 50.000 0.00 0.00 33.47 4.40
120 121 2.663879 GCACACTCAAAAGATGACTGCG 60.664 50.000 0.00 0.00 33.47 5.18
121 122 2.802247 CACACTCAAAAGATGACTGCGA 59.198 45.455 0.00 0.00 33.47 5.10
122 123 3.062763 ACACTCAAAAGATGACTGCGAG 58.937 45.455 0.00 0.00 33.47 5.03
124 125 3.496130 CACTCAAAAGATGACTGCGAGTT 59.504 43.478 0.00 0.00 33.47 3.01
125 126 4.686091 CACTCAAAAGATGACTGCGAGTTA 59.314 41.667 0.00 0.00 33.47 2.24
127 128 4.627058 TCAAAAGATGACTGCGAGTTACA 58.373 39.130 0.00 0.00 31.50 2.41
128 129 5.053811 TCAAAAGATGACTGCGAGTTACAA 58.946 37.500 0.00 0.00 31.50 2.41
129 130 5.525745 TCAAAAGATGACTGCGAGTTACAAA 59.474 36.000 0.00 0.00 31.50 2.83
130 131 6.037720 TCAAAAGATGACTGCGAGTTACAAAA 59.962 34.615 0.00 0.00 31.50 2.44
131 132 6.560253 AAAGATGACTGCGAGTTACAAAAT 57.440 33.333 0.00 0.00 0.00 1.82
132 133 5.536554 AGATGACTGCGAGTTACAAAATG 57.463 39.130 0.00 0.00 0.00 2.32
133 134 5.237815 AGATGACTGCGAGTTACAAAATGA 58.762 37.500 0.00 0.00 0.00 2.57
134 135 5.877012 AGATGACTGCGAGTTACAAAATGAT 59.123 36.000 0.00 0.00 0.00 2.45
135 136 5.940192 TGACTGCGAGTTACAAAATGATT 57.060 34.783 0.00 0.00 0.00 2.57
137 138 7.609760 TGACTGCGAGTTACAAAATGATTAT 57.390 32.000 0.00 0.00 0.00 1.28
138 139 7.463544 TGACTGCGAGTTACAAAATGATTATG 58.536 34.615 0.00 0.00 0.00 1.90
139 140 7.333174 TGACTGCGAGTTACAAAATGATTATGA 59.667 33.333 0.00 0.00 0.00 2.15
140 141 8.213518 ACTGCGAGTTACAAAATGATTATGAT 57.786 30.769 0.00 0.00 0.00 2.45
142 143 9.507280 CTGCGAGTTACAAAATGATTATGATTT 57.493 29.630 0.00 0.00 0.00 2.17
143 144 9.853555 TGCGAGTTACAAAATGATTATGATTTT 57.146 25.926 0.00 0.00 34.10 1.82
291 3383 6.801377 TCAGTGAATCGAAAATATGTTTGCAC 59.199 34.615 0.00 0.00 0.00 4.57
294 3386 7.326789 AGTGAATCGAAAATATGTTTGCACTTG 59.673 33.333 0.00 0.00 0.00 3.16
388 3480 9.906660 AAAGTTAGCGATTTCAAAACATATTCA 57.093 25.926 0.00 0.00 0.00 2.57
389 3481 8.895932 AGTTAGCGATTTCAAAACATATTCAC 57.104 30.769 0.00 0.00 0.00 3.18
390 3482 7.692291 AGTTAGCGATTTCAAAACATATTCACG 59.308 33.333 0.00 0.00 0.00 4.35
391 3483 6.176975 AGCGATTTCAAAACATATTCACGA 57.823 33.333 0.00 0.00 0.00 4.35
393 3485 7.250569 AGCGATTTCAAAACATATTCACGATT 58.749 30.769 0.00 0.00 0.00 3.34
394 3486 7.754924 AGCGATTTCAAAACATATTCACGATTT 59.245 29.630 0.00 0.00 0.00 2.17
462 3555 8.776376 ATTCAAAAACTGTTTGTGAACTCAAT 57.224 26.923 30.87 17.82 36.70 2.57
472 3565 5.689383 TTGTGAACTCAATAGGTCTTTGC 57.311 39.130 0.00 0.00 40.39 3.68
476 3569 5.049680 GTGAACTCAATAGGTCTTTGCGAAA 60.050 40.000 0.00 0.00 40.39 3.46
478 3571 5.551760 ACTCAATAGGTCTTTGCGAAATG 57.448 39.130 0.00 0.00 0.00 2.32
479 3572 5.245531 ACTCAATAGGTCTTTGCGAAATGA 58.754 37.500 0.00 0.00 0.00 2.57
480 3573 5.122396 ACTCAATAGGTCTTTGCGAAATGAC 59.878 40.000 12.69 12.69 0.00 3.06
482 3575 5.471797 TCAATAGGTCTTTGCGAAATGACAA 59.528 36.000 20.44 10.53 0.00 3.18
483 3576 6.150976 TCAATAGGTCTTTGCGAAATGACAAT 59.849 34.615 20.44 12.03 0.00 2.71
484 3577 4.164822 AGGTCTTTGCGAAATGACAATG 57.835 40.909 20.44 2.05 0.00 2.82
526 3619 7.684062 AAGTTCATGATTTCAAAGTTGTTCG 57.316 32.000 0.00 0.00 0.00 3.95
528 3621 7.925993 AGTTCATGATTTCAAAGTTGTTCGTA 58.074 30.769 0.00 0.00 0.00 3.43
534 3627 7.190871 TGATTTCAAAGTTGTTCGTAGTTTCC 58.809 34.615 0.00 0.00 0.00 3.13
551 3644 8.664798 CGTAGTTTCCATGAATGTTCTTGAATA 58.335 33.333 9.45 0.00 35.14 1.75
630 3723 3.002553 GTGCACATTGGGAAAGCAAAAAG 59.997 43.478 13.17 0.00 36.91 2.27
643 3736 7.012327 GGGAAAGCAAAAAGTAATGAAAAAGCT 59.988 33.333 0.00 0.00 0.00 3.74
723 3817 4.476628 GGAACGTTCTATAACCTTCCCA 57.523 45.455 26.32 0.00 41.35 4.37
727 3821 6.348786 GGAACGTTCTATAACCTTCCCAAAAC 60.349 42.308 26.32 0.84 41.35 2.43
733 3827 1.788229 AACCTTCCCAAAACTGGTGG 58.212 50.000 0.00 0.00 35.77 4.61
734 3828 0.930726 ACCTTCCCAAAACTGGTGGA 59.069 50.000 0.00 0.00 38.54 4.02
736 3830 2.090775 ACCTTCCCAAAACTGGTGGAAT 60.091 45.455 0.00 0.00 38.54 3.01
744 3838 6.556874 TCCCAAAACTGGTGGAATAAAAAGAT 59.443 34.615 0.00 0.00 38.54 2.40
817 3911 1.067495 GTAAGCTATCTGCCGGCCTAG 60.067 57.143 26.77 21.65 44.23 3.02
829 3923 2.561569 CCGGCCTAGGTGACAAATAAG 58.438 52.381 11.31 0.00 0.00 1.73
841 3935 3.010027 TGACAAATAAGATCTGGGCCACA 59.990 43.478 0.00 0.00 0.00 4.17
875 3969 5.470047 ACGGATCATGAGTATTACTTCCC 57.530 43.478 0.09 0.00 0.00 3.97
900 3995 2.357517 GACCAGTGTGGGTGCTCG 60.358 66.667 0.00 0.00 43.37 5.03
902 3997 2.172483 GACCAGTGTGGGTGCTCGAT 62.172 60.000 0.00 0.00 43.37 3.59
904 3999 1.300971 CCAGTGTGGGTGCTCGATTG 61.301 60.000 0.00 0.00 32.67 2.67
905 4000 0.320683 CAGTGTGGGTGCTCGATTGA 60.321 55.000 0.00 0.00 0.00 2.57
907 4002 0.037326 GTGTGGGTGCTCGATTGAGA 60.037 55.000 14.59 0.00 45.57 3.27
908 4003 0.247460 TGTGGGTGCTCGATTGAGAG 59.753 55.000 14.59 1.89 45.57 3.20
909 4004 0.532573 GTGGGTGCTCGATTGAGAGA 59.467 55.000 14.59 0.00 45.57 3.10
910 4005 0.820226 TGGGTGCTCGATTGAGAGAG 59.180 55.000 14.59 0.00 45.57 3.20
913 4008 2.887783 GGGTGCTCGATTGAGAGAGATA 59.112 50.000 14.59 0.00 45.57 1.98
914 4009 3.509575 GGGTGCTCGATTGAGAGAGATAT 59.490 47.826 14.59 0.00 45.57 1.63
919 4014 7.913297 GGTGCTCGATTGAGAGAGATATATAAC 59.087 40.741 14.59 0.00 45.57 1.89
1098 4649 0.615331 ACGACCTCCTCTACCACGTA 59.385 55.000 0.00 0.00 0.00 3.57
1172 4723 2.586792 GCGCCACCTCTGGAGATT 59.413 61.111 0.00 0.00 39.70 2.40
1174 4725 1.227089 CGCCACCTCTGGAGATTCG 60.227 63.158 0.00 0.00 39.70 3.34
1216 4772 1.358759 GTCAAGGGGTGCAACAACG 59.641 57.895 3.06 0.00 39.98 4.10
1244 4800 1.521423 GTTCGTCAACTTCGTCCACAG 59.479 52.381 0.00 0.00 0.00 3.66
1246 4802 1.557443 CGTCAACTTCGTCCACAGCC 61.557 60.000 0.00 0.00 0.00 4.85
1476 5038 5.028549 TGCTTTCTAATGTCCCTCTCATC 57.971 43.478 0.00 0.00 0.00 2.92
1504 5066 3.262420 CACCTTACCAGATTGGAACTCG 58.738 50.000 1.40 0.00 40.96 4.18
1515 5077 0.895530 TGGAACTCGAGATGGTGGAC 59.104 55.000 21.68 0.87 0.00 4.02
1518 5080 0.243907 AACTCGAGATGGTGGACGTG 59.756 55.000 21.68 0.00 0.00 4.49
1523 5085 1.467543 CGAGATGGTGGACGTGTACAG 60.468 57.143 0.00 0.00 0.00 2.74
1539 5101 2.386661 ACAGCAGTACCCTCGATTTG 57.613 50.000 0.00 0.00 0.00 2.32
1646 5208 5.122239 TCAGCATCAACCTCAGTTATTTTCG 59.878 40.000 0.00 0.00 33.27 3.46
1780 5342 5.407387 TCGGCAAGTGTTATTCTTAGTTCAC 59.593 40.000 0.00 0.00 0.00 3.18
1822 5384 1.355381 AGAATGACTGTGGGGATTGCA 59.645 47.619 0.00 0.00 0.00 4.08
1890 5452 3.444737 AGACGTGGCGAGTCTGTT 58.555 55.556 12.82 0.00 46.12 3.16
1906 5468 6.034044 CGAGTCTGTTCTTTTCGAAGGATTAG 59.966 42.308 0.00 3.63 33.38 1.73
1915 5477 3.802948 TCGAAGGATTAGCAGAAGTCC 57.197 47.619 0.00 0.00 0.00 3.85
1916 5478 3.096852 TCGAAGGATTAGCAGAAGTCCA 58.903 45.455 0.00 0.00 33.12 4.02
1917 5479 3.131223 TCGAAGGATTAGCAGAAGTCCAG 59.869 47.826 0.00 0.00 33.12 3.86
2006 5985 0.098728 ACGTTGCTCACACAAGTTGC 59.901 50.000 1.81 0.00 0.00 4.17
2025 6004 6.524734 AGTTGCGATCCAATTCATACTATCA 58.475 36.000 0.00 0.00 35.55 2.15
2111 6091 7.810658 ACAGTGAGCAGTTTAATTGTAAGATG 58.189 34.615 0.00 0.00 0.00 2.90
2192 12560 6.068853 TCTGGAGACAAATTTCTATTCCCCAT 60.069 38.462 0.00 0.00 42.06 4.00
2193 12561 5.893255 TGGAGACAAATTTCTATTCCCCATG 59.107 40.000 0.00 0.00 37.44 3.66
2349 12724 1.603455 CAGCAAATGGTGTCCCGGT 60.603 57.895 0.00 0.00 38.61 5.28
2356 12731 0.107214 ATGGTGTCCCGGTATTGCTG 60.107 55.000 0.00 0.00 0.00 4.41
2401 12776 7.531857 TGCTTCCTTAAACATTCACCAATTA 57.468 32.000 0.00 0.00 0.00 1.40
2434 12809 4.707448 TCACTCTCCATCTTTCTGAGGTAC 59.293 45.833 0.00 0.00 0.00 3.34
2480 12855 6.660722 TGTTTGTTATTGCAGTTACTTACCG 58.339 36.000 0.05 0.00 0.00 4.02
2482 12857 3.368539 TGTTATTGCAGTTACTTACCGCG 59.631 43.478 0.00 0.00 32.63 6.46
2484 12859 1.293267 TTGCAGTTACTTACCGCGCC 61.293 55.000 0.00 0.00 32.63 6.53
2609 12992 5.927689 GCCATCTGAAGATAGTTGAGATCAG 59.072 44.000 0.00 0.00 36.50 2.90
2797 15081 6.034470 CACAAAATGCACTTTTTCACGTAGTT 59.966 34.615 0.00 0.00 34.39 2.24
2798 15082 6.588373 ACAAAATGCACTTTTTCACGTAGTTT 59.412 30.769 0.00 0.00 34.39 2.66
2913 15197 9.241317 GCATAATTATCTTTGTCCAAACATGAG 57.759 33.333 0.00 0.00 34.73 2.90
3223 15507 5.509498 TCTTTGCCATTATGGACTTTAGCT 58.491 37.500 16.46 0.00 40.96 3.32
3253 15560 4.036852 GGCAATCTTTCTTATAGTGCCCAC 59.963 45.833 1.78 0.00 43.41 4.61
3321 15634 0.381089 GCTGATGCTGATGTTGAGCC 59.619 55.000 0.00 0.00 35.43 4.70
3434 16051 2.038295 AGGCTTTGAGTCTGTCCTCTTG 59.962 50.000 0.00 0.00 32.50 3.02
3454 16071 2.095314 TGTTGGACACGCATTGCTATTG 60.095 45.455 7.12 3.87 0.00 1.90
3565 17899 3.202706 GGAGCGCCGGTTTGATCC 61.203 66.667 2.29 11.10 0.00 3.36
3636 18062 3.742433 AGGATGTGCTCTCTTATTCCG 57.258 47.619 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.140792 GCTGCCCTCCCGATTAGGA 61.141 63.158 0.00 0.00 45.00 2.94
3 4 1.983119 TTGCTGCCCTCCCGATTAGG 61.983 60.000 0.00 0.00 40.63 2.69
5 6 0.329931 TTTTGCTGCCCTCCCGATTA 59.670 50.000 0.00 0.00 0.00 1.75
7 8 1.379044 CTTTTGCTGCCCTCCCGAT 60.379 57.895 0.00 0.00 0.00 4.18
8 9 2.034066 CTTTTGCTGCCCTCCCGA 59.966 61.111 0.00 0.00 0.00 5.14
9 10 3.752339 GCTTTTGCTGCCCTCCCG 61.752 66.667 0.00 0.00 43.35 5.14
10 11 3.752339 CGCTTTTGCTGCCCTCCC 61.752 66.667 0.00 0.00 44.80 4.30
11 12 4.426112 GCGCTTTTGCTGCCCTCC 62.426 66.667 0.00 0.00 44.80 4.30
17 18 3.599792 CTGACCGGCGCTTTTGCTG 62.600 63.158 7.64 0.00 44.80 4.41
18 19 3.357079 CTGACCGGCGCTTTTGCT 61.357 61.111 7.64 0.00 44.80 3.91
31 32 4.500116 GGTCCGGAGAGCGCTGAC 62.500 72.222 18.48 15.99 0.00 3.51
37 38 1.104577 AAGAGATCGGTCCGGAGAGC 61.105 60.000 12.29 1.71 37.15 4.09
38 39 0.665835 CAAGAGATCGGTCCGGAGAG 59.334 60.000 12.29 1.06 0.00 3.20
39 40 0.034380 ACAAGAGATCGGTCCGGAGA 60.034 55.000 12.29 0.00 0.00 3.71
40 41 0.818296 AACAAGAGATCGGTCCGGAG 59.182 55.000 12.29 0.00 0.00 4.63
41 42 1.067142 CAAACAAGAGATCGGTCCGGA 60.067 52.381 12.29 0.00 0.00 5.14
42 43 1.359848 CAAACAAGAGATCGGTCCGG 58.640 55.000 12.29 0.00 0.00 5.14
43 44 0.721718 GCAAACAAGAGATCGGTCCG 59.278 55.000 4.39 4.39 0.00 4.79
45 46 3.896648 TTTGCAAACAAGAGATCGGTC 57.103 42.857 8.05 0.00 37.04 4.79
46 47 4.278170 TGAATTTGCAAACAAGAGATCGGT 59.722 37.500 15.41 0.00 37.04 4.69
47 48 4.797471 TGAATTTGCAAACAAGAGATCGG 58.203 39.130 15.41 0.00 37.04 4.18
48 49 6.752335 TTTGAATTTGCAAACAAGAGATCG 57.248 33.333 15.41 0.00 37.04 3.69
49 50 8.134905 ACTTTTGAATTTGCAAACAAGAGATC 57.865 30.769 26.39 13.90 37.48 2.75
52 53 7.520686 ACAACTTTTGAATTTGCAAACAAGAG 58.479 30.769 21.63 21.63 37.48 2.85
53 54 7.432350 ACAACTTTTGAATTTGCAAACAAGA 57.568 28.000 15.41 9.48 37.48 3.02
55 56 7.742089 CGTAACAACTTTTGAATTTGCAAACAA 59.258 29.630 15.41 12.37 37.48 2.83
56 57 7.116376 TCGTAACAACTTTTGAATTTGCAAACA 59.884 29.630 15.41 6.18 37.48 2.83
57 58 7.449027 TCGTAACAACTTTTGAATTTGCAAAC 58.551 30.769 15.41 3.18 37.48 2.93
59 60 7.582435 TTCGTAACAACTTTTGAATTTGCAA 57.418 28.000 0.00 0.00 0.00 4.08
60 61 7.763172 ATTCGTAACAACTTTTGAATTTGCA 57.237 28.000 0.00 0.00 0.00 4.08
61 62 9.142993 GAAATTCGTAACAACTTTTGAATTTGC 57.857 29.630 13.52 4.58 42.68 3.68
65 66 9.796120 TCTTGAAATTCGTAACAACTTTTGAAT 57.204 25.926 0.00 0.00 0.00 2.57
66 67 9.627395 TTCTTGAAATTCGTAACAACTTTTGAA 57.373 25.926 0.00 0.00 0.00 2.69
67 68 9.627395 TTTCTTGAAATTCGTAACAACTTTTGA 57.373 25.926 0.00 0.00 0.00 2.69
70 71 9.581099 ACATTTCTTGAAATTCGTAACAACTTT 57.419 25.926 5.92 0.00 0.00 2.66
71 72 9.581099 AACATTTCTTGAAATTCGTAACAACTT 57.419 25.926 5.92 0.00 0.00 2.66
73 74 8.198816 CGAACATTTCTTGAAATTCGTAACAAC 58.801 33.333 16.91 0.00 36.20 3.32
74 75 7.096803 GCGAACATTTCTTGAAATTCGTAACAA 60.097 33.333 21.88 0.00 39.86 2.83
75 76 6.358558 GCGAACATTTCTTGAAATTCGTAACA 59.641 34.615 21.88 0.00 39.86 2.41
76 77 6.358558 TGCGAACATTTCTTGAAATTCGTAAC 59.641 34.615 21.88 12.70 39.86 2.50
77 78 6.358558 GTGCGAACATTTCTTGAAATTCGTAA 59.641 34.615 21.88 13.87 39.86 3.18
79 80 4.675114 GTGCGAACATTTCTTGAAATTCGT 59.325 37.500 21.88 11.08 39.86 3.85
80 81 4.674662 TGTGCGAACATTTCTTGAAATTCG 59.325 37.500 19.15 19.15 40.28 3.34
82 83 5.591099 AGTGTGCGAACATTTCTTGAAATT 58.409 33.333 0.00 0.00 0.00 1.82
83 84 5.186996 AGTGTGCGAACATTTCTTGAAAT 57.813 34.783 0.00 3.04 0.00 2.17
84 85 4.095632 TGAGTGTGCGAACATTTCTTGAAA 59.904 37.500 0.00 0.00 0.00 2.69
85 86 3.625313 TGAGTGTGCGAACATTTCTTGAA 59.375 39.130 0.00 0.00 0.00 2.69
86 87 3.202097 TGAGTGTGCGAACATTTCTTGA 58.798 40.909 0.00 0.00 0.00 3.02
87 88 3.607422 TGAGTGTGCGAACATTTCTTG 57.393 42.857 0.00 0.00 0.00 3.02
88 89 4.630894 TTTGAGTGTGCGAACATTTCTT 57.369 36.364 0.00 0.00 0.00 2.52
89 90 4.335315 TCTTTTGAGTGTGCGAACATTTCT 59.665 37.500 0.00 0.00 0.00 2.52
90 91 4.597079 TCTTTTGAGTGTGCGAACATTTC 58.403 39.130 0.00 1.44 0.00 2.17
91 92 4.630894 TCTTTTGAGTGTGCGAACATTT 57.369 36.364 0.00 0.00 0.00 2.32
92 93 4.275689 TCATCTTTTGAGTGTGCGAACATT 59.724 37.500 0.00 0.00 0.00 2.71
94 95 3.002246 GTCATCTTTTGAGTGTGCGAACA 59.998 43.478 0.00 0.00 34.17 3.18
96 97 3.248363 CAGTCATCTTTTGAGTGTGCGAA 59.752 43.478 2.89 0.00 46.51 4.70
97 98 2.802247 CAGTCATCTTTTGAGTGTGCGA 59.198 45.455 2.89 0.00 46.51 5.10
103 104 3.393089 ACTCGCAGTCATCTTTTGAGT 57.607 42.857 0.00 0.00 38.61 3.41
104 105 4.686091 TGTAACTCGCAGTCATCTTTTGAG 59.314 41.667 0.00 0.00 34.17 3.02
105 106 4.627058 TGTAACTCGCAGTCATCTTTTGA 58.373 39.130 0.00 0.00 0.00 2.69
107 108 6.371809 TTTTGTAACTCGCAGTCATCTTTT 57.628 33.333 0.00 0.00 0.00 2.27
109 110 5.700832 TCATTTTGTAACTCGCAGTCATCTT 59.299 36.000 0.00 0.00 0.00 2.40
110 111 5.237815 TCATTTTGTAACTCGCAGTCATCT 58.762 37.500 0.00 0.00 0.00 2.90
111 112 5.530519 TCATTTTGTAACTCGCAGTCATC 57.469 39.130 0.00 0.00 0.00 2.92
112 113 6.500684 AATCATTTTGTAACTCGCAGTCAT 57.499 33.333 0.00 0.00 0.00 3.06
113 114 5.940192 AATCATTTTGTAACTCGCAGTCA 57.060 34.783 0.00 0.00 0.00 3.41
114 115 7.684670 TCATAATCATTTTGTAACTCGCAGTC 58.315 34.615 0.00 0.00 0.00 3.51
115 116 7.609760 TCATAATCATTTTGTAACTCGCAGT 57.390 32.000 0.00 0.00 0.00 4.40
116 117 9.507280 AAATCATAATCATTTTGTAACTCGCAG 57.493 29.630 0.00 0.00 0.00 5.18
117 118 9.853555 AAAATCATAATCATTTTGTAACTCGCA 57.146 25.926 0.00 0.00 33.17 5.10
189 190 8.132995 TCATGAGCATATGATGAATTTGTGAAC 58.867 33.333 6.97 0.00 32.39 3.18
192 193 9.476202 AAATCATGAGCATATGATGAATTTGTG 57.524 29.630 6.97 0.00 44.74 3.33
250 3342 8.873830 CGATTCACTGACATTTTATAGACTTGT 58.126 33.333 0.00 0.00 0.00 3.16
262 3354 9.345517 CAAACATATTTTCGATTCACTGACATT 57.654 29.630 0.00 0.00 0.00 2.71
365 3457 7.690637 TCGTGAATATGTTTTGAAATCGCTAAC 59.309 33.333 0.00 0.00 0.00 2.34
368 3460 6.176975 TCGTGAATATGTTTTGAAATCGCT 57.823 33.333 0.00 0.00 0.00 4.93
389 3481 9.498433 GTGAACATTTTTAATCACGAAAAATCG 57.502 29.630 3.69 0.00 42.02 3.34
429 3522 8.655092 TCACAAACAGTTTTTGAATTCATGAAC 58.345 29.630 11.07 19.19 33.83 3.18
462 3555 4.759693 ACATTGTCATTTCGCAAAGACCTA 59.240 37.500 0.93 0.00 0.00 3.08
503 3596 6.795399 ACGAACAACTTTGAAATCATGAACT 58.205 32.000 0.00 0.00 0.00 3.01
504 3597 7.855904 ACTACGAACAACTTTGAAATCATGAAC 59.144 33.333 0.00 0.00 0.00 3.18
506 3599 7.490962 ACTACGAACAACTTTGAAATCATGA 57.509 32.000 0.00 0.00 0.00 3.07
508 3601 7.860872 GGAAACTACGAACAACTTTGAAATCAT 59.139 33.333 0.00 0.00 0.00 2.45
509 3602 7.148222 TGGAAACTACGAACAACTTTGAAATCA 60.148 33.333 0.00 0.00 0.00 2.57
510 3603 7.190871 TGGAAACTACGAACAACTTTGAAATC 58.809 34.615 0.00 0.00 0.00 2.17
511 3604 7.090953 TGGAAACTACGAACAACTTTGAAAT 57.909 32.000 0.00 0.00 0.00 2.17
519 3612 5.997385 ACATTCATGGAAACTACGAACAAC 58.003 37.500 0.00 0.00 0.00 3.32
520 3613 6.485313 AGAACATTCATGGAAACTACGAACAA 59.515 34.615 0.00 0.00 0.00 2.83
590 3683 9.941325 AATGTGCACCATATTTTCTAAATTCAA 57.059 25.926 15.69 0.00 31.97 2.69
599 3692 4.734398 TCCCAATGTGCACCATATTTTC 57.266 40.909 15.69 0.00 31.97 2.29
630 3723 7.597386 ACCTGATTTCTCAGCTTTTTCATTAC 58.403 34.615 0.00 0.00 46.39 1.89
656 3749 8.368668 CCTGAGTTTCCTCTTAAGTCTTCTTTA 58.631 37.037 1.63 0.00 38.61 1.85
695 3788 5.410924 AGGTTATAGAACGTTCCGTAAACC 58.589 41.667 27.92 27.92 39.99 3.27
706 3799 5.123344 CCAGTTTTGGGAAGGTTATAGAACG 59.877 44.000 0.00 0.00 41.05 3.95
734 3828 9.057089 CCACTCGGCTCTTTATATCTTTTTATT 57.943 33.333 0.00 0.00 0.00 1.40
736 3830 6.990349 CCCACTCGGCTCTTTATATCTTTTTA 59.010 38.462 0.00 0.00 0.00 1.52
744 3838 2.169769 CCAACCCACTCGGCTCTTTATA 59.830 50.000 0.00 0.00 33.26 0.98
778 3872 2.961893 AAACGCGTGCCCCCTCATA 61.962 57.895 14.98 0.00 0.00 2.15
817 3911 2.952310 GGCCCAGATCTTATTTGTCACC 59.048 50.000 0.00 0.00 0.00 4.02
829 3923 2.436646 CACCGTGTGGCCCAGATC 60.437 66.667 0.00 0.00 39.70 2.75
841 3935 3.118920 TCATGATCCGTAATTGACACCGT 60.119 43.478 0.00 0.00 0.00 4.83
900 3995 6.202937 CCGGCGTTATATATCTCTCTCAATC 58.797 44.000 6.01 0.00 0.00 2.67
902 3997 4.398358 CCCGGCGTTATATATCTCTCTCAA 59.602 45.833 6.01 0.00 0.00 3.02
904 3999 3.243134 GCCCGGCGTTATATATCTCTCTC 60.243 52.174 6.01 0.00 0.00 3.20
905 4000 2.688958 GCCCGGCGTTATATATCTCTCT 59.311 50.000 6.01 0.00 0.00 3.10
1211 4767 2.660552 CGAACCACTCCGCGTTGT 60.661 61.111 4.92 0.00 0.00 3.32
1216 4772 0.878961 AAGTTGACGAACCACTCCGC 60.879 55.000 0.00 0.00 31.81 5.54
1246 4802 4.200283 GTCGCGGAGGAGGAGCAG 62.200 72.222 6.13 0.00 0.00 4.24
1306 4862 1.661112 CTCCTTGAAATCGAAGTCGCC 59.339 52.381 0.00 0.00 39.60 5.54
1476 5038 4.020218 TCCAATCTGGTAAGGTGTTGAGAG 60.020 45.833 0.00 0.00 39.03 3.20
1504 5066 1.736032 GCTGTACACGTCCACCATCTC 60.736 57.143 0.00 0.00 0.00 2.75
1518 5080 3.187700 CAAATCGAGGGTACTGCTGTAC 58.812 50.000 21.89 21.89 46.06 2.90
1523 5085 2.271800 CTGACAAATCGAGGGTACTGC 58.728 52.381 0.00 0.00 0.00 4.40
1530 5092 2.076863 GGACAACCTGACAAATCGAGG 58.923 52.381 0.00 0.00 32.42 4.63
1539 5101 4.681978 AGCGCCGGACAACCTGAC 62.682 66.667 5.05 0.00 0.00 3.51
1646 5208 4.344865 TGCGAAAGGGGCCTGTCC 62.345 66.667 0.84 0.00 0.00 4.02
1780 5342 9.903682 ATTCTTAGAACAAGAATCAACACAATG 57.096 29.630 0.00 0.00 41.68 2.82
1822 5384 6.942005 TGACAACCATAACACTGAAGATCATT 59.058 34.615 0.00 0.00 0.00 2.57
1890 5452 5.794894 ACTTCTGCTAATCCTTCGAAAAGA 58.205 37.500 0.00 0.00 34.14 2.52
1906 5468 3.576004 CAGCTGCTGGACTTCTGC 58.424 61.111 21.71 0.00 40.23 4.26
1915 5477 0.250209 ACTGACAACTCCAGCTGCTG 60.250 55.000 22.44 22.44 35.14 4.41
1916 5478 0.471617 AACTGACAACTCCAGCTGCT 59.528 50.000 8.66 0.00 35.14 4.24
1917 5479 0.590195 CAACTGACAACTCCAGCTGC 59.410 55.000 8.66 0.00 35.14 5.25
1982 5544 4.985044 ACTTGTGTGAGCAACGTAATAC 57.015 40.909 0.00 0.00 0.00 1.89
2006 5985 9.265901 AGAACTTTGATAGTATGAATTGGATCG 57.734 33.333 0.00 0.00 35.54 3.69
2025 6004 7.502226 TCATAATTGTGTGAGGTCAAGAACTTT 59.498 33.333 1.86 0.00 0.00 2.66
2072 6051 7.593825 ACTGCTCACTGTTTAATATTTCAACC 58.406 34.615 0.00 0.00 0.00 3.77
2349 12724 9.725019 CTTAATATATTGAGGTCACCAGCAATA 57.275 33.333 18.95 18.95 37.40 1.90
2356 12731 8.451908 AAGCAACTTAATATATTGAGGTCACC 57.548 34.615 18.48 5.86 0.00 4.02
2502 12877 5.071923 AGGTACCTGAAGCATTTACCCTATC 59.928 44.000 15.42 0.00 33.89 2.08
2503 12878 4.975794 AGGTACCTGAAGCATTTACCCTAT 59.024 41.667 15.42 0.00 33.89 2.57
2506 12881 3.646736 AGGTACCTGAAGCATTTACCC 57.353 47.619 15.42 0.00 33.89 3.69
2609 12992 3.862267 CCTCTCATCAACTTCGTCACATC 59.138 47.826 0.00 0.00 0.00 3.06
2645 13029 6.702449 ATGCCATGGGTACTCAAGATATTA 57.298 37.500 15.13 0.00 0.00 0.98
2887 15171 9.241317 CTCATGTTTGGACAAAGATAATTATGC 57.759 33.333 1.78 0.00 39.66 3.14
2913 15197 9.371136 TCATGTCATAGAAACTTGATTAGTGTC 57.629 33.333 0.00 0.00 40.85 3.67
3223 15507 7.445402 GCACTATAAGAAAGATTGCCCTGATTA 59.555 37.037 0.00 0.00 0.00 1.75
3253 15560 6.169094 ACACATGTCTCCATTGTAAGAAGAG 58.831 40.000 0.00 0.00 0.00 2.85
3321 15634 4.006319 CTCCTTCTAAGCCACAAGGAAAG 58.994 47.826 1.49 0.00 44.11 2.62
3434 16051 2.095263 ACAATAGCAATGCGTGTCCAAC 60.095 45.455 0.00 0.00 0.00 3.77
3443 16060 6.035327 GGACATTGAAAAGACAATAGCAATGC 59.965 38.462 0.00 0.00 43.69 3.56
3565 17899 1.303074 CCATGGATGCGGATCTGGG 60.303 63.158 16.91 11.51 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.