Multiple sequence alignment - TraesCS2D01G424000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G424000 chr2D 100.000 5445 0 0 1 5445 537003852 537009296 0.000000e+00 10056
1 TraesCS2D01G424000 chr2D 85.781 2996 359 44 1927 4912 589970060 589967122 0.000000e+00 3110
2 TraesCS2D01G424000 chr2D 96.774 310 10 0 1 310 516812987 516812678 8.080000e-143 518
3 TraesCS2D01G424000 chr1A 96.608 3921 112 9 1541 5443 292526596 292522679 0.000000e+00 6484
4 TraesCS2D01G424000 chr1A 94.134 1074 25 19 656 1725 292527634 292526595 0.000000e+00 1600
5 TraesCS2D01G424000 chr1A 92.857 98 7 0 363 460 397258624 397258527 5.690000e-30 143
6 TraesCS2D01G424000 chr7A 96.580 3918 107 8 1541 5443 651975189 651971284 0.000000e+00 6468
7 TraesCS2D01G424000 chr7A 93.942 1073 29 16 656 1725 651976227 651975188 0.000000e+00 1589
8 TraesCS2D01G424000 chr7A 85.987 157 18 3 1925 2080 1979448 1979295 1.210000e-36 165
9 TraesCS2D01G424000 chr7A 90.741 108 9 1 354 460 115736249 115736356 5.690000e-30 143
10 TraesCS2D01G424000 chr7A 90.385 104 9 1 357 460 115825907 115825805 9.510000e-28 135
11 TraesCS2D01G424000 chr5B 91.947 3328 222 24 1956 5269 548130210 548133505 0.000000e+00 4619
12 TraesCS2D01G424000 chr5B 87.753 3209 322 49 1922 5087 170634333 170637513 0.000000e+00 3683
13 TraesCS2D01G424000 chr5B 85.458 612 74 12 656 1263 548128763 548129363 1.670000e-174 623
14 TraesCS2D01G424000 chr5B 84.127 252 36 3 1027 1274 170633052 170633303 1.960000e-59 241
15 TraesCS2D01G424000 chr5B 86.607 224 22 8 5221 5440 548133501 548133720 1.960000e-59 241
16 TraesCS2D01G424000 chr1B 86.236 3175 361 53 1927 5087 3166600 3169712 0.000000e+00 3373
17 TraesCS2D01G424000 chr4D 85.962 2828 333 48 2275 5087 422220141 422222919 0.000000e+00 2964
18 TraesCS2D01G424000 chr4D 97.411 309 8 0 1 309 11922023 11921715 1.340000e-145 527
19 TraesCS2D01G424000 chr4D 97.411 309 8 0 1 309 85734887 85734579 1.340000e-145 527
20 TraesCS2D01G424000 chr7D 86.867 2627 302 33 2473 5087 587287052 587284457 0.000000e+00 2900
21 TraesCS2D01G424000 chr7D 97.411 309 7 1 1 309 196125592 196125285 4.830000e-145 525
22 TraesCS2D01G424000 chr1D 86.824 2626 310 28 2473 5087 431422043 431419443 0.000000e+00 2900
23 TraesCS2D01G424000 chr1D 89.720 107 10 1 354 460 465126599 465126494 9.510000e-28 135
24 TraesCS2D01G424000 chr2B 86.013 622 72 8 656 1270 764898025 764897412 0.000000e+00 652
25 TraesCS2D01G424000 chr6B 83.857 669 70 25 656 1304 705391697 705392347 2.170000e-168 603
26 TraesCS2D01G424000 chr6B 89.720 107 11 0 354 460 179340677 179340783 2.650000e-28 137
27 TraesCS2D01G424000 chr5D 82.396 676 67 29 656 1304 458681570 458682220 4.800000e-150 542
28 TraesCS2D01G424000 chr5D 97.735 309 7 0 1 309 26843442 26843750 2.890000e-147 532
29 TraesCS2D01G424000 chr5D 97.735 309 7 0 1 309 371077088 371077396 2.890000e-147 532
30 TraesCS2D01G424000 chr6D 97.411 309 8 0 1 309 8984178 8984486 1.340000e-145 527
31 TraesCS2D01G424000 chr6D 96.815 314 10 0 1 314 77815246 77815559 4.830000e-145 525
32 TraesCS2D01G424000 chr3D 96.764 309 10 0 1 309 15846340 15846032 2.910000e-142 516
33 TraesCS2D01G424000 chr2A 91.570 344 22 5 310 652 679548269 679548606 8.260000e-128 468
34 TraesCS2D01G424000 chr2A 92.233 103 6 2 361 461 218122245 218122347 1.580000e-30 145
35 TraesCS2D01G424000 chr5A 78.365 587 99 18 656 1233 105461189 105460622 6.710000e-94 355
36 TraesCS2D01G424000 chr5A 85.987 157 18 3 1925 2080 477449340 477449493 1.210000e-36 165
37 TraesCS2D01G424000 chr5A 90.654 107 7 2 354 460 447365016 447365119 7.350000e-29 139
38 TraesCS2D01G424000 chr3A 75.449 668 114 30 1941 2599 12607288 12606662 4.150000e-71 279
39 TraesCS2D01G424000 chr3A 75.037 681 116 33 1929 2599 12591671 12591035 3.230000e-67 267
40 TraesCS2D01G424000 chr3A 91.824 159 9 4 876 1034 738617510 738617356 9.180000e-53 219
41 TraesCS2D01G424000 chr3A 85.987 157 18 3 1925 2080 646000767 646000920 1.210000e-36 165
42 TraesCS2D01G424000 chrUn 91.824 159 9 4 876 1034 340647353 340647199 9.180000e-53 219
43 TraesCS2D01G424000 chr3B 85.128 195 23 5 1085 1274 829254566 829254759 1.550000e-45 195
44 TraesCS2D01G424000 chr3B 83.784 148 12 5 1632 1779 829255230 829255365 4.430000e-26 130
45 TraesCS2D01G424000 chr4A 90.000 110 10 1 361 469 571000273 571000164 2.040000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G424000 chr2D 537003852 537009296 5444 False 10056.000000 10056 100.000 1 5445 1 chr2D.!!$F1 5444
1 TraesCS2D01G424000 chr2D 589967122 589970060 2938 True 3110.000000 3110 85.781 1927 4912 1 chr2D.!!$R2 2985
2 TraesCS2D01G424000 chr1A 292522679 292527634 4955 True 4042.000000 6484 95.371 656 5443 2 chr1A.!!$R2 4787
3 TraesCS2D01G424000 chr7A 651971284 651976227 4943 True 4028.500000 6468 95.261 656 5443 2 chr7A.!!$R3 4787
4 TraesCS2D01G424000 chr5B 170633052 170637513 4461 False 1962.000000 3683 85.940 1027 5087 2 chr5B.!!$F1 4060
5 TraesCS2D01G424000 chr5B 548128763 548133720 4957 False 1827.666667 4619 88.004 656 5440 3 chr5B.!!$F2 4784
6 TraesCS2D01G424000 chr1B 3166600 3169712 3112 False 3373.000000 3373 86.236 1927 5087 1 chr1B.!!$F1 3160
7 TraesCS2D01G424000 chr4D 422220141 422222919 2778 False 2964.000000 2964 85.962 2275 5087 1 chr4D.!!$F1 2812
8 TraesCS2D01G424000 chr7D 587284457 587287052 2595 True 2900.000000 2900 86.867 2473 5087 1 chr7D.!!$R2 2614
9 TraesCS2D01G424000 chr1D 431419443 431422043 2600 True 2900.000000 2900 86.824 2473 5087 1 chr1D.!!$R1 2614
10 TraesCS2D01G424000 chr2B 764897412 764898025 613 True 652.000000 652 86.013 656 1270 1 chr2B.!!$R1 614
11 TraesCS2D01G424000 chr6B 705391697 705392347 650 False 603.000000 603 83.857 656 1304 1 chr6B.!!$F2 648
12 TraesCS2D01G424000 chr5D 458681570 458682220 650 False 542.000000 542 82.396 656 1304 1 chr5D.!!$F3 648
13 TraesCS2D01G424000 chr5A 105460622 105461189 567 True 355.000000 355 78.365 656 1233 1 chr5A.!!$R1 577
14 TraesCS2D01G424000 chr3A 12606662 12607288 626 True 279.000000 279 75.449 1941 2599 1 chr3A.!!$R2 658
15 TraesCS2D01G424000 chr3A 12591035 12591671 636 True 267.000000 267 75.037 1929 2599 1 chr3A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.034896 GAAAGGGTCAGCCGAGTGAA 59.965 55.000 0.00 0.0 34.97 3.18 F
515 516 0.107993 GGTAGTACCAACCCTTCCGC 60.108 60.000 14.82 0.0 38.42 5.54 F
1008 1031 0.620556 GAAGGGAGAACATGGAGGCA 59.379 55.000 0.00 0.0 0.00 4.75 F
1144 1167 0.837691 ACAGGATCCACAGGTCAGCA 60.838 55.000 15.82 0.0 0.00 4.41 F
2180 3166 1.280133 TCATTCACTGCCCTCCTTCAG 59.720 52.381 0.00 0.0 36.45 3.02 F
2887 3893 3.005554 AGAAGGCAATCTGATGAACACG 58.994 45.455 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1144 1.003355 ACCTGTGGATCCTGTTGCG 60.003 57.895 14.23 0.0 0.00 4.85 R
1875 2812 4.514066 GGTACTTTTCAATGTTCCGTGTCT 59.486 41.667 0.00 0.0 0.00 3.41 R
1890 2827 5.564550 AGAATGTGAGATGCAGGTACTTTT 58.435 37.500 0.00 0.0 34.60 2.27 R
2887 3893 7.542130 CCTAAATGTGGCTTGAAATTACTGTTC 59.458 37.037 0.00 0.0 0.00 3.18 R
3623 4630 1.151172 CCAACAAAGGGTGCAAACGC 61.151 55.000 0.00 0.0 0.00 4.84 R
4628 5638 1.072806 TGGAGTTCTCTGCTGCAACAT 59.927 47.619 3.02 0.0 31.49 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.540910 TGGGAGGGGAGAGAGGGT 60.541 66.667 0.00 0.00 0.00 4.34
18 19 2.041405 GGGAGGGGAGAGAGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
19 20 2.041405 GGAGGGGAGAGAGGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
20 21 2.041405 GAGGGGAGAGAGGGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
21 22 3.700350 AGGGGAGAGAGGGTGGGG 61.700 72.222 0.00 0.00 0.00 4.96
24 25 4.741239 GGAGAGAGGGTGGGGCCA 62.741 72.222 4.39 0.00 39.65 5.36
25 26 3.086600 GAGAGAGGGTGGGGCCAG 61.087 72.222 4.39 0.00 39.65 4.85
32 33 3.339093 GGTGGGGCCAGCCTAAGT 61.339 66.667 4.39 0.00 38.38 2.24
33 34 2.044946 GTGGGGCCAGCCTAAGTG 60.045 66.667 4.39 0.00 36.10 3.16
34 35 3.338250 TGGGGCCAGCCTAAGTGG 61.338 66.667 4.39 0.00 38.21 4.00
35 36 3.015145 GGGGCCAGCCTAAGTGGA 61.015 66.667 4.39 0.00 37.23 4.02
36 37 2.612493 GGGGCCAGCCTAAGTGGAA 61.612 63.158 4.39 0.00 37.23 3.53
37 38 1.378646 GGGCCAGCCTAAGTGGAAC 60.379 63.158 4.39 0.00 37.23 3.62
38 39 1.378762 GGCCAGCCTAAGTGGAACA 59.621 57.895 0.00 0.00 41.43 3.18
54 55 3.720193 CACAGACTGTGCAGCGCC 61.720 66.667 22.06 0.00 41.89 6.53
55 56 3.933722 ACAGACTGTGCAGCGCCT 61.934 61.111 7.47 0.00 0.00 5.52
56 57 2.262603 CAGACTGTGCAGCGCCTA 59.737 61.111 2.29 0.00 0.00 3.93
57 58 1.374631 CAGACTGTGCAGCGCCTAA 60.375 57.895 2.29 0.00 0.00 2.69
58 59 1.079543 AGACTGTGCAGCGCCTAAG 60.080 57.895 2.29 0.00 0.00 2.18
59 60 1.079819 GACTGTGCAGCGCCTAAGA 60.080 57.895 2.29 0.00 0.00 2.10
60 61 1.079543 ACTGTGCAGCGCCTAAGAG 60.080 57.895 2.29 0.00 0.00 2.85
61 62 1.216444 CTGTGCAGCGCCTAAGAGA 59.784 57.895 2.29 0.00 0.00 3.10
62 63 1.079819 TGTGCAGCGCCTAAGAGAC 60.080 57.895 2.29 0.00 0.00 3.36
63 64 2.161486 GTGCAGCGCCTAAGAGACG 61.161 63.158 2.29 0.00 0.00 4.18
64 65 2.583593 GCAGCGCCTAAGAGACGG 60.584 66.667 2.29 0.00 0.00 4.79
65 66 2.105128 CAGCGCCTAAGAGACGGG 59.895 66.667 2.29 0.00 0.00 5.28
66 67 3.839432 AGCGCCTAAGAGACGGGC 61.839 66.667 2.29 0.00 42.18 6.13
69 70 3.839432 GCCTAAGAGACGGGCGCT 61.839 66.667 7.64 0.00 36.37 5.92
70 71 2.105128 CCTAAGAGACGGGCGCTG 59.895 66.667 7.64 2.40 0.00 5.18
71 72 2.583593 CTAAGAGACGGGCGCTGC 60.584 66.667 7.64 0.00 0.00 5.25
72 73 3.356639 CTAAGAGACGGGCGCTGCA 62.357 63.158 7.64 0.00 0.00 4.41
73 74 3.642778 TAAGAGACGGGCGCTGCAC 62.643 63.158 7.64 0.00 0.00 4.57
76 77 4.704833 AGACGGGCGCTGCACATT 62.705 61.111 7.64 0.00 0.00 2.71
77 78 2.817834 GACGGGCGCTGCACATTA 60.818 61.111 7.64 0.00 0.00 1.90
78 79 3.095898 GACGGGCGCTGCACATTAC 62.096 63.158 7.64 0.00 0.00 1.89
79 80 3.124270 CGGGCGCTGCACATTACA 61.124 61.111 7.64 0.00 0.00 2.41
80 81 2.685829 CGGGCGCTGCACATTACAA 61.686 57.895 7.64 0.00 0.00 2.41
81 82 1.137404 GGGCGCTGCACATTACAAG 59.863 57.895 7.64 0.00 0.00 3.16
82 83 1.586154 GGGCGCTGCACATTACAAGT 61.586 55.000 7.64 0.00 0.00 3.16
83 84 0.454957 GGCGCTGCACATTACAAGTG 60.455 55.000 7.64 0.00 39.92 3.16
84 85 0.238289 GCGCTGCACATTACAAGTGT 59.762 50.000 0.00 0.00 39.17 3.55
86 87 1.400113 CGCTGCACATTACAAGTGTGG 60.400 52.381 8.17 0.00 45.39 4.17
87 88 1.666888 GCTGCACATTACAAGTGTGGC 60.667 52.381 8.17 1.07 45.39 5.01
88 89 0.590682 TGCACATTACAAGTGTGGCG 59.409 50.000 8.17 0.00 45.39 5.69
89 90 0.729140 GCACATTACAAGTGTGGCGC 60.729 55.000 0.00 0.00 45.39 6.53
90 91 0.109781 CACATTACAAGTGTGGCGCC 60.110 55.000 22.73 22.73 42.43 6.53
91 92 0.250727 ACATTACAAGTGTGGCGCCT 60.251 50.000 29.70 7.80 0.00 5.52
92 93 1.002659 ACATTACAAGTGTGGCGCCTA 59.997 47.619 29.70 14.39 0.00 3.93
93 94 2.080693 CATTACAAGTGTGGCGCCTAA 58.919 47.619 29.70 16.05 0.00 2.69
94 95 1.803334 TTACAAGTGTGGCGCCTAAG 58.197 50.000 29.70 13.64 0.00 2.18
95 96 0.672401 TACAAGTGTGGCGCCTAAGC 60.672 55.000 29.70 15.33 0.00 3.09
111 112 3.503363 GCCTTAGGCGCTGCAGTG 61.503 66.667 23.02 23.02 39.62 3.66
119 120 2.664185 CGCTGCAGTGCTGTCTGT 60.664 61.111 21.31 0.00 37.70 3.41
120 121 2.944429 GCTGCAGTGCTGTCTGTG 59.056 61.111 21.31 3.03 37.70 3.66
121 122 2.614446 GCTGCAGTGCTGTCTGTGG 61.614 63.158 21.31 1.81 37.70 4.17
122 123 1.964891 CTGCAGTGCTGTCTGTGGG 60.965 63.158 17.60 0.00 37.70 4.61
123 124 2.670934 GCAGTGCTGTCTGTGGGG 60.671 66.667 8.18 0.00 37.70 4.96
124 125 2.670934 CAGTGCTGTCTGTGGGGC 60.671 66.667 0.00 0.00 0.00 5.80
125 126 3.958860 AGTGCTGTCTGTGGGGCC 61.959 66.667 0.00 0.00 0.00 5.80
129 130 4.641645 CTGTCTGTGGGGCCGCAA 62.642 66.667 25.93 13.64 35.92 4.85
130 131 4.947147 TGTCTGTGGGGCCGCAAC 62.947 66.667 25.93 19.38 35.92 4.17
131 132 4.643387 GTCTGTGGGGCCGCAACT 62.643 66.667 25.93 0.00 35.92 3.16
132 133 4.641645 TCTGTGGGGCCGCAACTG 62.642 66.667 25.93 20.13 35.92 3.16
142 143 4.335647 CGCAACTGGACCAGGGCT 62.336 66.667 27.56 11.63 35.05 5.19
143 144 2.674380 GCAACTGGACCAGGGCTG 60.674 66.667 25.34 18.62 35.51 4.85
144 145 2.674380 CAACTGGACCAGGGCTGC 60.674 66.667 25.34 0.00 35.51 5.25
145 146 3.971702 AACTGGACCAGGGCTGCC 61.972 66.667 25.34 11.05 35.51 4.85
147 148 4.729918 CTGGACCAGGGCTGCCAC 62.730 72.222 22.05 10.03 0.00 5.01
170 171 3.449227 CAGGAGGTGCGACGCCTA 61.449 66.667 18.69 0.00 45.19 3.93
171 172 2.678934 AGGAGGTGCGACGCCTAA 60.679 61.111 18.69 0.00 45.19 2.69
172 173 2.202756 GGAGGTGCGACGCCTAAG 60.203 66.667 18.69 0.00 45.19 2.18
173 174 2.202756 GAGGTGCGACGCCTAAGG 60.203 66.667 18.69 0.00 45.19 2.69
174 175 4.452733 AGGTGCGACGCCTAAGGC 62.453 66.667 18.69 0.00 43.18 4.35
194 195 2.725490 CAGAGACGCTGCATAGTAGTG 58.275 52.381 0.00 0.00 37.90 2.74
195 196 2.098280 CAGAGACGCTGCATAGTAGTGT 59.902 50.000 0.00 1.01 41.24 3.55
196 197 2.098280 AGAGACGCTGCATAGTAGTGTG 59.902 50.000 6.05 0.00 38.86 3.82
197 198 0.924090 GACGCTGCATAGTAGTGTGC 59.076 55.000 12.04 12.04 38.86 4.57
201 202 3.049227 TGCATAGTAGTGTGCAGCG 57.951 52.632 17.08 0.00 45.03 5.18
202 203 1.083806 TGCATAGTAGTGTGCAGCGC 61.084 55.000 17.08 0.00 45.03 5.92
203 204 1.766143 GCATAGTAGTGTGCAGCGCC 61.766 60.000 13.85 0.00 40.41 6.53
204 205 0.179100 CATAGTAGTGTGCAGCGCCT 60.179 55.000 2.29 2.90 0.00 5.52
205 206 1.067060 CATAGTAGTGTGCAGCGCCTA 59.933 52.381 2.29 1.90 0.00 3.93
206 207 0.738975 TAGTAGTGTGCAGCGCCTAG 59.261 55.000 2.29 0.00 0.00 3.02
237 238 2.342279 CACGAAAGGGTCAGCCGA 59.658 61.111 0.00 0.00 34.97 5.54
238 239 1.738099 CACGAAAGGGTCAGCCGAG 60.738 63.158 0.00 0.00 34.97 4.63
239 240 2.207924 ACGAAAGGGTCAGCCGAGT 61.208 57.895 0.00 0.00 34.97 4.18
240 241 1.738099 CGAAAGGGTCAGCCGAGTG 60.738 63.158 0.00 0.00 34.97 3.51
241 242 1.671742 GAAAGGGTCAGCCGAGTGA 59.328 57.895 0.00 0.00 34.97 3.41
242 243 0.034896 GAAAGGGTCAGCCGAGTGAA 59.965 55.000 0.00 0.00 34.97 3.18
243 244 0.472471 AAAGGGTCAGCCGAGTGAAA 59.528 50.000 0.00 0.00 34.97 2.69
244 245 0.693049 AAGGGTCAGCCGAGTGAAAT 59.307 50.000 0.00 0.00 34.97 2.17
245 246 0.693049 AGGGTCAGCCGAGTGAAATT 59.307 50.000 0.00 0.00 34.97 1.82
246 247 1.073923 AGGGTCAGCCGAGTGAAATTT 59.926 47.619 0.00 0.00 34.97 1.82
247 248 1.886542 GGGTCAGCCGAGTGAAATTTT 59.113 47.619 0.00 0.00 34.97 1.82
248 249 2.296190 GGGTCAGCCGAGTGAAATTTTT 59.704 45.455 0.00 0.00 34.97 1.94
264 265 1.398692 TTTTTCGAAAGCAGGCCAGT 58.601 45.000 10.98 0.00 0.00 4.00
265 266 1.398692 TTTTCGAAAGCAGGCCAGTT 58.601 45.000 10.98 0.00 0.00 3.16
266 267 1.398692 TTTCGAAAGCAGGCCAGTTT 58.601 45.000 6.47 0.00 0.00 2.66
267 268 0.667993 TTCGAAAGCAGGCCAGTTTG 59.332 50.000 5.01 0.00 0.00 2.93
268 269 0.465460 TCGAAAGCAGGCCAGTTTGT 60.465 50.000 5.01 0.00 0.00 2.83
269 270 0.318107 CGAAAGCAGGCCAGTTTGTG 60.318 55.000 5.01 0.00 0.00 3.33
270 271 1.032014 GAAAGCAGGCCAGTTTGTGA 58.968 50.000 5.01 0.00 0.00 3.58
271 272 1.615392 GAAAGCAGGCCAGTTTGTGAT 59.385 47.619 5.01 0.00 0.00 3.06
272 273 1.708341 AAGCAGGCCAGTTTGTGATT 58.292 45.000 5.01 0.00 0.00 2.57
273 274 1.708341 AGCAGGCCAGTTTGTGATTT 58.292 45.000 5.01 0.00 0.00 2.17
274 275 1.342174 AGCAGGCCAGTTTGTGATTTG 59.658 47.619 5.01 0.00 0.00 2.32
275 276 1.340889 GCAGGCCAGTTTGTGATTTGA 59.659 47.619 5.01 0.00 0.00 2.69
276 277 2.028748 GCAGGCCAGTTTGTGATTTGAT 60.029 45.455 5.01 0.00 0.00 2.57
277 278 3.555586 GCAGGCCAGTTTGTGATTTGATT 60.556 43.478 5.01 0.00 0.00 2.57
278 279 4.634199 CAGGCCAGTTTGTGATTTGATTT 58.366 39.130 5.01 0.00 0.00 2.17
279 280 4.687483 CAGGCCAGTTTGTGATTTGATTTC 59.313 41.667 5.01 0.00 0.00 2.17
280 281 3.674753 GGCCAGTTTGTGATTTGATTTCG 59.325 43.478 0.00 0.00 0.00 3.46
281 282 3.121778 GCCAGTTTGTGATTTGATTTCGC 59.878 43.478 0.00 0.00 0.00 4.70
282 283 3.674753 CCAGTTTGTGATTTGATTTCGCC 59.325 43.478 0.00 0.00 0.00 5.54
283 284 3.674753 CAGTTTGTGATTTGATTTCGCCC 59.325 43.478 0.00 0.00 0.00 6.13
284 285 3.573967 AGTTTGTGATTTGATTTCGCCCT 59.426 39.130 0.00 0.00 0.00 5.19
285 286 3.848272 TTGTGATTTGATTTCGCCCTC 57.152 42.857 0.00 0.00 0.00 4.30
286 287 2.789213 TGTGATTTGATTTCGCCCTCA 58.211 42.857 0.00 0.00 0.00 3.86
287 288 2.749076 TGTGATTTGATTTCGCCCTCAG 59.251 45.455 0.00 0.00 0.00 3.35
288 289 2.098117 GTGATTTGATTTCGCCCTCAGG 59.902 50.000 0.00 0.00 0.00 3.86
289 290 2.290896 TGATTTGATTTCGCCCTCAGGT 60.291 45.455 0.00 0.00 34.57 4.00
290 291 1.821216 TTTGATTTCGCCCTCAGGTC 58.179 50.000 0.00 0.00 34.57 3.85
291 292 0.690192 TTGATTTCGCCCTCAGGTCA 59.310 50.000 0.00 0.00 34.57 4.02
292 293 0.690192 TGATTTCGCCCTCAGGTCAA 59.310 50.000 0.00 0.00 34.57 3.18
293 294 1.073125 TGATTTCGCCCTCAGGTCAAA 59.927 47.619 0.00 0.00 34.57 2.69
294 295 2.290896 TGATTTCGCCCTCAGGTCAAAT 60.291 45.455 0.00 0.00 34.57 2.32
295 296 3.054728 TGATTTCGCCCTCAGGTCAAATA 60.055 43.478 0.00 0.00 34.57 1.40
296 297 3.644966 TTTCGCCCTCAGGTCAAATAT 57.355 42.857 0.00 0.00 34.57 1.28
297 298 2.620251 TCGCCCTCAGGTCAAATATG 57.380 50.000 0.00 0.00 34.57 1.78
298 299 1.837439 TCGCCCTCAGGTCAAATATGT 59.163 47.619 0.00 0.00 34.57 2.29
299 300 1.942657 CGCCCTCAGGTCAAATATGTG 59.057 52.381 0.00 0.00 34.57 3.21
300 301 2.419990 CGCCCTCAGGTCAAATATGTGA 60.420 50.000 0.00 0.00 34.57 3.58
301 302 3.745480 CGCCCTCAGGTCAAATATGTGAT 60.745 47.826 0.00 0.00 34.57 3.06
302 303 4.210331 GCCCTCAGGTCAAATATGTGATT 58.790 43.478 0.00 0.00 34.57 2.57
303 304 4.646492 GCCCTCAGGTCAAATATGTGATTT 59.354 41.667 0.00 0.00 34.57 2.17
304 305 5.221126 GCCCTCAGGTCAAATATGTGATTTC 60.221 44.000 0.00 0.00 34.57 2.17
305 306 6.125029 CCCTCAGGTCAAATATGTGATTTCT 58.875 40.000 0.00 0.00 0.00 2.52
306 307 6.039047 CCCTCAGGTCAAATATGTGATTTCTG 59.961 42.308 0.00 7.91 0.00 3.02
307 308 6.441093 TCAGGTCAAATATGTGATTTCTGC 57.559 37.500 14.18 0.00 0.00 4.26
308 309 5.357878 TCAGGTCAAATATGTGATTTCTGCC 59.642 40.000 14.18 5.01 0.00 4.85
309 310 4.646492 AGGTCAAATATGTGATTTCTGCCC 59.354 41.667 0.00 0.00 0.00 5.36
310 311 4.402155 GGTCAAATATGTGATTTCTGCCCA 59.598 41.667 0.00 0.00 0.00 5.36
311 312 5.450965 GGTCAAATATGTGATTTCTGCCCAG 60.451 44.000 0.00 0.00 0.00 4.45
312 313 4.098349 TCAAATATGTGATTTCTGCCCAGC 59.902 41.667 0.00 0.00 0.00 4.85
313 314 3.589951 ATATGTGATTTCTGCCCAGCT 57.410 42.857 0.00 0.00 0.00 4.24
314 315 1.471119 ATGTGATTTCTGCCCAGCTG 58.529 50.000 6.78 6.78 0.00 4.24
315 316 0.111061 TGTGATTTCTGCCCAGCTGT 59.889 50.000 13.81 0.00 0.00 4.40
316 317 0.524862 GTGATTTCTGCCCAGCTGTG 59.475 55.000 13.81 1.33 0.00 3.66
317 318 0.609957 TGATTTCTGCCCAGCTGTGG 60.610 55.000 13.81 14.43 44.56 4.17
341 342 2.665185 GCCCAGCGAACAGACGTT 60.665 61.111 0.00 0.00 38.33 3.99
342 343 2.954753 GCCCAGCGAACAGACGTTG 61.955 63.158 0.00 0.00 42.34 4.10
343 344 2.551270 CCAGCGAACAGACGTTGC 59.449 61.111 0.00 0.00 41.62 4.17
344 345 2.168621 CAGCGAACAGACGTTGCG 59.831 61.111 0.00 0.00 37.62 4.85
345 346 2.279252 AGCGAACAGACGTTGCGT 60.279 55.556 0.00 0.00 45.10 5.24
346 347 2.128128 GCGAACAGACGTTGCGTG 60.128 61.111 0.00 0.00 41.37 5.34
347 348 2.544359 CGAACAGACGTTGCGTGG 59.456 61.111 0.00 0.00 41.37 4.94
348 349 2.935955 GAACAGACGTTGCGTGGG 59.064 61.111 0.00 0.00 41.37 4.61
349 350 1.593209 GAACAGACGTTGCGTGGGA 60.593 57.895 0.00 0.00 41.37 4.37
350 351 1.153329 AACAGACGTTGCGTGGGAA 60.153 52.632 0.00 0.00 41.37 3.97
351 352 1.433837 AACAGACGTTGCGTGGGAAC 61.434 55.000 0.00 0.00 41.37 3.62
355 356 2.710698 CGTTGCGTGGGAACGTTT 59.289 55.556 13.15 0.00 41.00 3.60
356 357 1.933005 CGTTGCGTGGGAACGTTTA 59.067 52.632 13.15 0.00 41.00 2.01
357 358 0.304098 CGTTGCGTGGGAACGTTTAA 59.696 50.000 13.15 0.00 41.00 1.52
358 359 1.069771 CGTTGCGTGGGAACGTTTAAT 60.070 47.619 13.15 0.00 41.00 1.40
359 360 2.577450 GTTGCGTGGGAACGTTTAATC 58.423 47.619 0.46 0.00 35.26 1.75
360 361 2.172851 TGCGTGGGAACGTTTAATCT 57.827 45.000 0.46 0.00 35.26 2.40
361 362 3.316071 TGCGTGGGAACGTTTAATCTA 57.684 42.857 0.46 0.00 35.26 1.98
362 363 3.864243 TGCGTGGGAACGTTTAATCTAT 58.136 40.909 0.46 0.00 35.26 1.98
363 364 3.866910 TGCGTGGGAACGTTTAATCTATC 59.133 43.478 0.46 0.00 35.26 2.08
364 365 3.866910 GCGTGGGAACGTTTAATCTATCA 59.133 43.478 0.46 0.00 35.26 2.15
365 366 4.025979 GCGTGGGAACGTTTAATCTATCAG 60.026 45.833 0.46 0.00 35.26 2.90
366 367 5.107133 CGTGGGAACGTTTAATCTATCAGT 58.893 41.667 0.46 0.00 0.00 3.41
367 368 5.579511 CGTGGGAACGTTTAATCTATCAGTT 59.420 40.000 0.46 0.00 0.00 3.16
368 369 6.091713 CGTGGGAACGTTTAATCTATCAGTTT 59.908 38.462 0.46 0.00 0.00 2.66
369 370 7.360607 CGTGGGAACGTTTAATCTATCAGTTTT 60.361 37.037 0.46 0.00 0.00 2.43
370 371 8.938906 GTGGGAACGTTTAATCTATCAGTTTTA 58.061 33.333 0.46 0.00 0.00 1.52
371 372 8.938906 TGGGAACGTTTAATCTATCAGTTTTAC 58.061 33.333 0.46 0.00 0.00 2.01
372 373 9.159364 GGGAACGTTTAATCTATCAGTTTTACT 57.841 33.333 0.46 0.00 0.00 2.24
403 404 8.147642 ACATTTAGATGTGCTCTAAGTATTGC 57.852 34.615 0.00 0.00 45.07 3.56
404 405 7.770433 ACATTTAGATGTGCTCTAAGTATTGCA 59.230 33.333 0.00 0.00 45.07 4.08
414 415 8.737168 TGCTCTAAGTATTGCACATCTAATTT 57.263 30.769 0.00 0.00 0.00 1.82
415 416 8.830580 TGCTCTAAGTATTGCACATCTAATTTC 58.169 33.333 0.00 0.00 0.00 2.17
416 417 9.050601 GCTCTAAGTATTGCACATCTAATTTCT 57.949 33.333 0.00 0.00 0.00 2.52
422 423 9.836864 AGTATTGCACATCTAATTTCTATGTCA 57.163 29.630 0.00 0.00 31.60 3.58
425 426 9.961265 ATTGCACATCTAATTTCTATGTCATTG 57.039 29.630 0.00 0.00 31.60 2.82
426 427 8.735692 TGCACATCTAATTTCTATGTCATTGA 57.264 30.769 0.00 0.00 31.60 2.57
427 428 9.346005 TGCACATCTAATTTCTATGTCATTGAT 57.654 29.630 0.00 0.00 31.60 2.57
446 447 9.123709 TCATTGATTTTACGTTAAGATTTGTGC 57.876 29.630 0.00 0.00 0.00 4.57
447 448 8.910666 CATTGATTTTACGTTAAGATTTGTGCA 58.089 29.630 0.00 0.00 0.00 4.57
448 449 8.858003 TTGATTTTACGTTAAGATTTGTGCAA 57.142 26.923 0.00 0.00 0.00 4.08
449 450 8.500837 TGATTTTACGTTAAGATTTGTGCAAG 57.499 30.769 0.00 0.00 0.00 4.01
450 451 8.132362 TGATTTTACGTTAAGATTTGTGCAAGT 58.868 29.630 0.00 0.00 0.00 3.16
451 452 9.601971 GATTTTACGTTAAGATTTGTGCAAGTA 57.398 29.630 0.00 0.00 0.00 2.24
453 454 9.953697 TTTTACGTTAAGATTTGTGCAAGTATT 57.046 25.926 0.00 0.00 0.00 1.89
454 455 9.953697 TTTACGTTAAGATTTGTGCAAGTATTT 57.046 25.926 0.00 0.00 0.00 1.40
455 456 9.953697 TTACGTTAAGATTTGTGCAAGTATTTT 57.046 25.926 0.00 0.00 0.00 1.82
456 457 8.502161 ACGTTAAGATTTGTGCAAGTATTTTC 57.498 30.769 0.00 0.00 0.00 2.29
457 458 8.349983 ACGTTAAGATTTGTGCAAGTATTTTCT 58.650 29.630 0.00 0.00 0.00 2.52
458 459 9.180678 CGTTAAGATTTGTGCAAGTATTTTCTT 57.819 29.630 0.00 0.00 0.00 2.52
462 463 9.822185 AAGATTTGTGCAAGTATTTTCTTTCTT 57.178 25.926 0.00 0.00 0.00 2.52
497 498 6.787085 ATATAAGAGAAAAATTCGCTCGGG 57.213 37.500 0.00 0.00 38.94 5.14
498 499 2.474410 AGAGAAAAATTCGCTCGGGT 57.526 45.000 0.00 0.00 34.61 5.28
499 500 3.604875 AGAGAAAAATTCGCTCGGGTA 57.395 42.857 0.00 0.00 34.61 3.69
500 501 3.522553 AGAGAAAAATTCGCTCGGGTAG 58.477 45.455 0.00 0.00 34.61 3.18
501 502 3.056035 AGAGAAAAATTCGCTCGGGTAGT 60.056 43.478 0.00 0.00 34.61 2.73
502 503 4.159135 AGAGAAAAATTCGCTCGGGTAGTA 59.841 41.667 0.00 0.00 34.61 1.82
503 504 4.179298 AGAAAAATTCGCTCGGGTAGTAC 58.821 43.478 0.00 0.00 34.02 2.73
504 505 2.591571 AAATTCGCTCGGGTAGTACC 57.408 50.000 11.20 11.20 37.60 3.34
505 506 1.477553 AATTCGCTCGGGTAGTACCA 58.522 50.000 20.97 0.25 41.02 3.25
506 507 1.477553 ATTCGCTCGGGTAGTACCAA 58.522 50.000 20.97 7.50 41.02 3.67
507 508 0.527565 TTCGCTCGGGTAGTACCAAC 59.472 55.000 20.97 3.67 41.02 3.77
508 509 1.140375 CGCTCGGGTAGTACCAACC 59.860 63.158 20.97 6.47 41.02 3.77
515 516 0.107993 GGTAGTACCAACCCTTCCGC 60.108 60.000 14.82 0.00 38.42 5.54
516 517 0.107993 GTAGTACCAACCCTTCCGCC 60.108 60.000 0.00 0.00 0.00 6.13
517 518 1.266867 TAGTACCAACCCTTCCGCCC 61.267 60.000 0.00 0.00 0.00 6.13
518 519 3.332385 TACCAACCCTTCCGCCCC 61.332 66.667 0.00 0.00 0.00 5.80
537 538 4.687901 CCCCCTTATGCCTTTAAATTGG 57.312 45.455 0.00 0.00 0.00 3.16
538 539 3.390967 CCCCCTTATGCCTTTAAATTGGG 59.609 47.826 0.00 0.00 0.00 4.12
539 540 3.181455 CCCCTTATGCCTTTAAATTGGGC 60.181 47.826 9.46 9.46 45.45 5.36
540 541 3.181455 CCCTTATGCCTTTAAATTGGGCC 60.181 47.826 12.89 0.00 44.71 5.80
541 542 3.711190 CCTTATGCCTTTAAATTGGGCCT 59.289 43.478 12.89 7.10 44.71 5.19
542 543 4.898861 CCTTATGCCTTTAAATTGGGCCTA 59.101 41.667 12.89 0.00 44.71 3.93
543 544 5.365314 CCTTATGCCTTTAAATTGGGCCTAA 59.635 40.000 3.11 3.11 44.71 2.69
544 545 6.126911 CCTTATGCCTTTAAATTGGGCCTAAA 60.127 38.462 5.31 0.00 44.71 1.85
545 546 5.770685 ATGCCTTTAAATTGGGCCTAAAA 57.229 34.783 5.31 0.00 44.71 1.52
546 547 5.568620 TGCCTTTAAATTGGGCCTAAAAA 57.431 34.783 5.31 1.06 44.71 1.94
547 548 5.555966 TGCCTTTAAATTGGGCCTAAAAAG 58.444 37.500 5.31 11.24 44.71 2.27
548 549 4.394920 GCCTTTAAATTGGGCCTAAAAAGC 59.605 41.667 15.50 9.59 39.96 3.51
624 625 5.935448 TTAACAAGTTAAAACAACGCTGC 57.065 34.783 3.07 0.00 32.64 5.25
625 626 3.495670 ACAAGTTAAAACAACGCTGCA 57.504 38.095 0.00 0.00 0.00 4.41
626 627 3.839293 ACAAGTTAAAACAACGCTGCAA 58.161 36.364 0.00 0.00 0.00 4.08
627 628 4.238514 ACAAGTTAAAACAACGCTGCAAA 58.761 34.783 0.00 0.00 0.00 3.68
628 629 4.686554 ACAAGTTAAAACAACGCTGCAAAA 59.313 33.333 0.00 0.00 0.00 2.44
629 630 5.177696 ACAAGTTAAAACAACGCTGCAAAAA 59.822 32.000 0.00 0.00 0.00 1.94
758 761 3.023832 AGCCACAAAAACAGCTAACAGT 58.976 40.909 0.00 0.00 32.73 3.55
768 774 6.524101 AAACAGCTAACAGTGGAAAAAGAA 57.476 33.333 0.00 0.00 0.00 2.52
778 786 3.056465 AGTGGAAAAAGAACGCCAAAACA 60.056 39.130 0.00 0.00 31.18 2.83
959 974 5.167121 CAGATCTCACCTAACAACACAGAG 58.833 45.833 0.00 0.00 0.00 3.35
1008 1031 0.620556 GAAGGGAGAACATGGAGGCA 59.379 55.000 0.00 0.00 0.00 4.75
1121 1144 6.423776 AAGAAGATCATCAGAGAGGAATCC 57.576 41.667 0.10 0.00 0.00 3.01
1144 1167 0.837691 ACAGGATCCACAGGTCAGCA 60.838 55.000 15.82 0.00 0.00 4.41
1277 1314 7.731882 ACATCAAATTTGTGATCAATTGCAA 57.268 28.000 17.47 0.00 36.04 4.08
1279 1316 7.442969 ACATCAAATTTGTGATCAATTGCAAGT 59.557 29.630 17.47 0.00 36.04 3.16
1281 1318 8.523523 TCAAATTTGTGATCAATTGCAAGTAG 57.476 30.769 17.47 0.00 33.32 2.57
1285 1322 3.441222 TGTGATCAATTGCAAGTAGCTGG 59.559 43.478 4.94 0.00 45.94 4.85
1286 1323 3.691118 GTGATCAATTGCAAGTAGCTGGA 59.309 43.478 4.94 0.00 45.94 3.86
1603 2341 6.488683 TCACAAATTCCAGTGTAAAACCCTAG 59.511 38.462 5.80 0.00 37.07 3.02
1657 2433 6.097554 TCCAGTGTAAAACCATGTTTTCACAT 59.902 34.615 22.16 13.01 45.18 3.21
1669 2445 8.156165 ACCATGTTTTCACATTGTAAATCCAAT 58.844 29.630 0.00 0.00 41.16 3.16
1919 2856 4.164796 ACCTGCATCTCACATTCTATTCCA 59.835 41.667 0.00 0.00 0.00 3.53
2121 3089 7.213216 TGCATGAGCTTGTTCATTAAGTTTA 57.787 32.000 0.00 0.00 42.74 2.01
2180 3166 1.280133 TCATTCACTGCCCTCCTTCAG 59.720 52.381 0.00 0.00 36.45 3.02
2405 3403 5.594317 ACCAATGTAAACAAGGATATCTGCC 59.406 40.000 2.05 0.00 0.00 4.85
2887 3893 3.005554 AGAAGGCAATCTGATGAACACG 58.994 45.455 0.00 0.00 0.00 4.49
3122 4128 6.017770 CGTTGTACCCATGAGAAAAAGTACAA 60.018 38.462 8.93 8.93 44.19 2.41
3189 4195 7.567250 AGAGAAAGGAGGTTTTTGGGAAATTAA 59.433 33.333 0.00 0.00 0.00 1.40
3205 4211 7.013846 TGGGAAATTAAAAGACAACAACTCGAT 59.986 33.333 0.00 0.00 0.00 3.59
3920 4927 9.730705 CTAATGAAGGCCTATATGAAGATTTCA 57.269 33.333 5.16 0.85 45.01 2.69
3927 4934 6.205658 GGCCTATATGAAGATTTCAAGGACAC 59.794 42.308 10.66 0.12 41.10 3.67
3937 4944 3.358111 TTCAAGGACACTGTGGACAAA 57.642 42.857 13.09 0.00 0.00 2.83
4300 5308 1.064906 AGGCAAGCACATGAGCTGTAT 60.065 47.619 18.70 0.00 45.89 2.29
4347 5355 4.558178 CAGCATAAAATGGCAGACACAAA 58.442 39.130 0.00 0.00 0.00 2.83
4495 5504 2.743664 TCCTGCATCTGTTGTTCATTCG 59.256 45.455 0.00 0.00 0.00 3.34
4628 5638 5.127194 AGCTCGATATTACAAAGACACCAGA 59.873 40.000 0.00 0.00 0.00 3.86
4760 5770 6.830838 GGAGAATTGGACAGGATACAGAAAAT 59.169 38.462 0.00 0.00 41.41 1.82
4771 5781 7.225538 ACAGGATACAGAAAATATTGCGAGAAG 59.774 37.037 0.00 0.00 41.41 2.85
4781 5791 2.768253 TTGCGAGAAGTGGATGATGT 57.232 45.000 0.00 0.00 0.00 3.06
4868 5878 0.698818 GGTGAAGAGGGGACAACCAT 59.301 55.000 0.00 0.00 42.91 3.55
4882 5892 3.084039 ACAACCATGGCACTGACAATAG 58.916 45.455 13.04 0.00 0.00 1.73
4939 5949 4.258702 AGGATGCTAACTATTCGCGAAT 57.741 40.909 34.16 34.16 34.93 3.34
5212 6238 5.810095 AGGAAAGAAGAAGATGGACGAATT 58.190 37.500 0.00 0.00 0.00 2.17
5392 6465 3.403968 TGTTTGCGACCTACTGCATTTA 58.596 40.909 0.00 0.00 41.42 1.40
5396 6469 4.678509 TGCGACCTACTGCATTTAAAAG 57.321 40.909 0.00 0.00 35.90 2.27
5443 6516 2.680841 GTGCATTATTGGTGCCTTACGA 59.319 45.455 0.00 0.00 41.83 3.43
5444 6517 3.127895 GTGCATTATTGGTGCCTTACGAA 59.872 43.478 0.00 0.00 41.83 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.540910 ACCCTCTCTCCCCTCCCA 60.541 66.667 0.00 0.00 0.00 4.37
1 2 2.041405 CACCCTCTCTCCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
2 3 2.041405 CCACCCTCTCTCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
3 4 2.041405 CCCACCCTCTCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
4 5 3.700350 CCCCACCCTCTCTCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
7 8 4.741239 TGGCCCCACCCTCTCTCC 62.741 72.222 0.00 0.00 37.83 3.71
8 9 3.086600 CTGGCCCCACCCTCTCTC 61.087 72.222 0.00 0.00 37.83 3.20
13 14 4.693915 TTAGGCTGGCCCCACCCT 62.694 66.667 8.11 6.43 37.83 4.34
14 15 4.129148 CTTAGGCTGGCCCCACCC 62.129 72.222 8.11 0.00 37.83 4.61
15 16 3.339093 ACTTAGGCTGGCCCCACC 61.339 66.667 8.11 0.00 36.58 4.61
16 17 2.044946 CACTTAGGCTGGCCCCAC 60.045 66.667 8.11 0.00 36.58 4.61
17 18 3.338250 CCACTTAGGCTGGCCCCA 61.338 66.667 8.11 0.00 36.58 4.96
18 19 2.612493 TTCCACTTAGGCTGGCCCC 61.612 63.158 8.11 0.00 37.29 5.80
19 20 1.378646 GTTCCACTTAGGCTGGCCC 60.379 63.158 8.11 0.00 37.29 5.80
20 21 0.960861 GTGTTCCACTTAGGCTGGCC 60.961 60.000 3.00 3.00 37.29 5.36
21 22 0.250727 TGTGTTCCACTTAGGCTGGC 60.251 55.000 0.00 0.00 37.29 4.85
22 23 1.347707 TCTGTGTTCCACTTAGGCTGG 59.652 52.381 0.00 0.00 37.29 4.85
23 24 2.037772 AGTCTGTGTTCCACTTAGGCTG 59.962 50.000 0.00 0.00 37.29 4.85
24 25 2.037772 CAGTCTGTGTTCCACTTAGGCT 59.962 50.000 0.00 0.00 37.29 4.58
25 26 2.224305 ACAGTCTGTGTTCCACTTAGGC 60.224 50.000 4.21 0.00 34.94 3.93
26 27 3.393800 CACAGTCTGTGTTCCACTTAGG 58.606 50.000 22.62 0.00 43.08 2.69
38 39 2.099652 TTAGGCGCTGCACAGTCTGT 62.100 55.000 7.64 0.00 0.00 3.41
39 40 1.357258 CTTAGGCGCTGCACAGTCTG 61.357 60.000 7.64 0.00 0.00 3.51
40 41 1.079543 CTTAGGCGCTGCACAGTCT 60.080 57.895 7.64 0.00 0.00 3.24
41 42 1.079819 TCTTAGGCGCTGCACAGTC 60.080 57.895 7.64 0.00 0.00 3.51
42 43 1.079543 CTCTTAGGCGCTGCACAGT 60.080 57.895 7.64 0.00 0.00 3.55
43 44 1.080995 GTCTCTTAGGCGCTGCACAG 61.081 60.000 7.64 0.00 0.00 3.66
44 45 1.079819 GTCTCTTAGGCGCTGCACA 60.080 57.895 7.64 0.00 0.00 4.57
45 46 2.161486 CGTCTCTTAGGCGCTGCAC 61.161 63.158 7.64 0.00 36.16 4.57
46 47 2.181777 CGTCTCTTAGGCGCTGCA 59.818 61.111 7.64 0.00 36.16 4.41
47 48 2.583593 CCGTCTCTTAGGCGCTGC 60.584 66.667 7.64 0.00 42.90 5.25
48 49 2.105128 CCCGTCTCTTAGGCGCTG 59.895 66.667 7.64 0.00 42.90 5.18
49 50 3.839432 GCCCGTCTCTTAGGCGCT 61.839 66.667 7.64 0.00 42.90 5.92
52 53 3.839432 AGCGCCCGTCTCTTAGGC 61.839 66.667 2.29 0.00 43.53 3.93
53 54 2.105128 CAGCGCCCGTCTCTTAGG 59.895 66.667 2.29 0.00 0.00 2.69
54 55 2.583593 GCAGCGCCCGTCTCTTAG 60.584 66.667 2.29 0.00 0.00 2.18
55 56 3.378602 TGCAGCGCCCGTCTCTTA 61.379 61.111 2.29 0.00 0.00 2.10
59 60 3.309436 TAATGTGCAGCGCCCGTCT 62.309 57.895 2.29 0.00 0.00 4.18
60 61 2.817834 TAATGTGCAGCGCCCGTC 60.818 61.111 2.29 0.00 0.00 4.79
61 62 3.124921 GTAATGTGCAGCGCCCGT 61.125 61.111 2.29 0.00 0.00 5.28
62 63 2.582202 CTTGTAATGTGCAGCGCCCG 62.582 60.000 2.29 0.00 0.00 6.13
63 64 1.137404 CTTGTAATGTGCAGCGCCC 59.863 57.895 2.29 0.00 0.00 6.13
64 65 0.454957 CACTTGTAATGTGCAGCGCC 60.455 55.000 2.29 0.00 35.12 6.53
65 66 0.238289 ACACTTGTAATGTGCAGCGC 59.762 50.000 0.00 0.00 45.01 5.92
66 67 1.400113 CCACACTTGTAATGTGCAGCG 60.400 52.381 0.00 0.00 45.01 5.18
67 68 1.666888 GCCACACTTGTAATGTGCAGC 60.667 52.381 0.00 0.00 45.01 5.25
68 69 1.400113 CGCCACACTTGTAATGTGCAG 60.400 52.381 0.00 0.00 45.01 4.41
69 70 0.590682 CGCCACACTTGTAATGTGCA 59.409 50.000 0.00 0.00 45.01 4.57
70 71 0.729140 GCGCCACACTTGTAATGTGC 60.729 55.000 0.00 0.00 45.01 4.57
71 72 0.109781 GGCGCCACACTTGTAATGTG 60.110 55.000 24.80 0.00 46.39 3.21
72 73 0.250727 AGGCGCCACACTTGTAATGT 60.251 50.000 31.54 0.00 0.00 2.71
73 74 1.732941 TAGGCGCCACACTTGTAATG 58.267 50.000 31.54 0.00 0.00 1.90
74 75 2.356135 CTTAGGCGCCACACTTGTAAT 58.644 47.619 31.54 5.89 0.00 1.89
75 76 1.803334 CTTAGGCGCCACACTTGTAA 58.197 50.000 31.54 15.25 0.00 2.41
76 77 0.672401 GCTTAGGCGCCACACTTGTA 60.672 55.000 31.54 7.29 0.00 2.41
77 78 1.966451 GCTTAGGCGCCACACTTGT 60.966 57.895 31.54 8.51 0.00 3.16
78 79 2.870372 GCTTAGGCGCCACACTTG 59.130 61.111 31.54 13.03 0.00 3.16
94 95 3.503363 CACTGCAGCGCCTAAGGC 61.503 66.667 15.27 0.56 46.75 4.35
95 96 3.503363 GCACTGCAGCGCCTAAGG 61.503 66.667 15.95 0.00 0.00 2.69
96 97 2.435586 AGCACTGCAGCGCCTAAG 60.436 61.111 22.59 0.69 40.15 2.18
97 98 2.743538 CAGCACTGCAGCGCCTAA 60.744 61.111 22.59 0.00 40.15 2.69
98 99 3.939837 GACAGCACTGCAGCGCCTA 62.940 63.158 22.59 0.00 40.15 3.93
101 102 4.086178 CAGACAGCACTGCAGCGC 62.086 66.667 19.00 19.00 40.15 5.92
102 103 2.664185 ACAGACAGCACTGCAGCG 60.664 61.111 15.27 5.22 41.06 5.18
103 104 2.614446 CCACAGACAGCACTGCAGC 61.614 63.158 15.27 0.57 41.06 5.25
104 105 1.964891 CCCACAGACAGCACTGCAG 60.965 63.158 13.48 13.48 41.06 4.41
105 106 2.111669 CCCACAGACAGCACTGCA 59.888 61.111 3.30 0.00 41.06 4.41
106 107 2.670934 CCCCACAGACAGCACTGC 60.671 66.667 0.00 0.00 41.06 4.40
107 108 2.670934 GCCCCACAGACAGCACTG 60.671 66.667 0.00 0.00 42.78 3.66
108 109 3.958860 GGCCCCACAGACAGCACT 61.959 66.667 0.00 0.00 0.00 4.40
112 113 4.641645 TTGCGGCCCCACAGACAG 62.642 66.667 0.00 0.00 0.00 3.51
113 114 4.947147 GTTGCGGCCCCACAGACA 62.947 66.667 0.00 0.00 0.00 3.41
114 115 4.643387 AGTTGCGGCCCCACAGAC 62.643 66.667 0.00 0.00 0.00 3.51
115 116 4.641645 CAGTTGCGGCCCCACAGA 62.642 66.667 0.00 0.00 0.00 3.41
125 126 4.335647 AGCCCTGGTCCAGTTGCG 62.336 66.667 17.85 2.08 34.18 4.85
126 127 2.674380 CAGCCCTGGTCCAGTTGC 60.674 66.667 17.85 18.22 0.00 4.17
127 128 2.674380 GCAGCCCTGGTCCAGTTG 60.674 66.667 17.85 13.18 0.00 3.16
128 129 3.971702 GGCAGCCCTGGTCCAGTT 61.972 66.667 17.85 0.16 0.00 3.16
130 131 4.729918 GTGGCAGCCCTGGTCCAG 62.730 72.222 12.40 12.40 0.00 3.86
153 154 2.890847 CTTAGGCGTCGCACCTCCTG 62.891 65.000 20.50 0.00 38.81 3.86
154 155 2.678934 TTAGGCGTCGCACCTCCT 60.679 61.111 20.50 8.84 38.81 3.69
155 156 2.202756 CTTAGGCGTCGCACCTCC 60.203 66.667 20.50 0.35 38.81 4.30
156 157 2.202756 CCTTAGGCGTCGCACCTC 60.203 66.667 20.50 0.77 38.81 3.85
157 158 4.452733 GCCTTAGGCGTCGCACCT 62.453 66.667 20.50 10.37 39.62 4.00
167 168 4.823276 CAGCGTCTCTGCCTTAGG 57.177 61.111 0.00 0.00 35.78 2.69
174 175 2.098280 ACACTACTATGCAGCGTCTCTG 59.902 50.000 0.00 0.00 45.62 3.35
175 176 2.098280 CACACTACTATGCAGCGTCTCT 59.902 50.000 0.00 0.00 0.00 3.10
176 177 2.455032 CACACTACTATGCAGCGTCTC 58.545 52.381 0.00 0.00 0.00 3.36
177 178 1.469940 GCACACTACTATGCAGCGTCT 60.470 52.381 0.00 0.00 41.65 4.18
178 179 0.924090 GCACACTACTATGCAGCGTC 59.076 55.000 0.00 0.00 41.65 5.19
179 180 0.246360 TGCACACTACTATGCAGCGT 59.754 50.000 0.00 0.00 46.63 5.07
180 181 3.049227 TGCACACTACTATGCAGCG 57.951 52.632 0.00 0.00 46.63 5.18
184 185 1.638467 GCGCTGCACACTACTATGC 59.362 57.895 0.00 0.00 42.40 3.14
185 186 0.179100 AGGCGCTGCACACTACTATG 60.179 55.000 7.64 0.00 0.00 2.23
186 187 1.338337 CTAGGCGCTGCACACTACTAT 59.662 52.381 7.64 0.00 0.00 2.12
187 188 0.738975 CTAGGCGCTGCACACTACTA 59.261 55.000 7.64 0.00 0.00 1.82
188 189 1.513158 CTAGGCGCTGCACACTACT 59.487 57.895 7.64 0.00 0.00 2.57
189 190 2.167861 GCTAGGCGCTGCACACTAC 61.168 63.158 7.64 0.00 35.14 2.73
190 191 2.184322 GCTAGGCGCTGCACACTA 59.816 61.111 7.64 0.00 35.14 2.74
214 215 3.723348 GACCCTTTCGTGTGGCGC 61.723 66.667 0.00 0.00 41.07 6.53
215 216 2.280524 TGACCCTTTCGTGTGGCG 60.281 61.111 0.00 0.00 43.01 5.69
216 217 2.617274 GCTGACCCTTTCGTGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
217 218 1.966451 GGCTGACCCTTTCGTGTGG 60.966 63.158 0.00 0.00 0.00 4.17
218 219 2.317609 CGGCTGACCCTTTCGTGTG 61.318 63.158 0.00 0.00 0.00 3.82
219 220 2.030562 CGGCTGACCCTTTCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
220 221 1.738099 CTCGGCTGACCCTTTCGTG 60.738 63.158 0.00 0.00 0.00 4.35
221 222 2.207924 ACTCGGCTGACCCTTTCGT 61.208 57.895 0.00 0.00 0.00 3.85
222 223 1.738099 CACTCGGCTGACCCTTTCG 60.738 63.158 0.00 0.00 0.00 3.46
223 224 0.034896 TTCACTCGGCTGACCCTTTC 59.965 55.000 0.00 0.00 0.00 2.62
224 225 0.472471 TTTCACTCGGCTGACCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
225 226 0.693049 ATTTCACTCGGCTGACCCTT 59.307 50.000 0.00 0.00 0.00 3.95
226 227 0.693049 AATTTCACTCGGCTGACCCT 59.307 50.000 0.00 0.00 0.00 4.34
227 228 1.534729 AAATTTCACTCGGCTGACCC 58.465 50.000 0.00 0.00 0.00 4.46
228 229 3.643159 AAAAATTTCACTCGGCTGACC 57.357 42.857 0.00 0.00 0.00 4.02
245 246 1.398692 ACTGGCCTGCTTTCGAAAAA 58.601 45.000 12.41 2.51 0.00 1.94
246 247 1.398692 AACTGGCCTGCTTTCGAAAA 58.601 45.000 12.41 0.00 0.00 2.29
247 248 1.066908 CAAACTGGCCTGCTTTCGAAA 59.933 47.619 10.71 10.71 0.00 3.46
248 249 0.667993 CAAACTGGCCTGCTTTCGAA 59.332 50.000 9.95 0.00 0.00 3.71
249 250 0.465460 ACAAACTGGCCTGCTTTCGA 60.465 50.000 9.95 0.00 0.00 3.71
250 251 0.318107 CACAAACTGGCCTGCTTTCG 60.318 55.000 9.95 7.30 0.00 3.46
251 252 1.032014 TCACAAACTGGCCTGCTTTC 58.968 50.000 9.95 0.00 0.00 2.62
252 253 1.708341 ATCACAAACTGGCCTGCTTT 58.292 45.000 9.95 6.92 0.00 3.51
253 254 1.708341 AATCACAAACTGGCCTGCTT 58.292 45.000 9.95 0.17 0.00 3.91
254 255 1.342174 CAAATCACAAACTGGCCTGCT 59.658 47.619 9.95 0.00 0.00 4.24
255 256 1.340889 TCAAATCACAAACTGGCCTGC 59.659 47.619 9.95 0.00 0.00 4.85
256 257 3.947910 ATCAAATCACAAACTGGCCTG 57.052 42.857 8.29 8.29 0.00 4.85
257 258 4.559300 CGAAATCAAATCACAAACTGGCCT 60.559 41.667 3.32 0.00 0.00 5.19
258 259 3.674753 CGAAATCAAATCACAAACTGGCC 59.325 43.478 0.00 0.00 0.00 5.36
259 260 3.121778 GCGAAATCAAATCACAAACTGGC 59.878 43.478 0.00 0.00 0.00 4.85
260 261 3.674753 GGCGAAATCAAATCACAAACTGG 59.325 43.478 0.00 0.00 0.00 4.00
261 262 3.674753 GGGCGAAATCAAATCACAAACTG 59.325 43.478 0.00 0.00 0.00 3.16
262 263 3.573967 AGGGCGAAATCAAATCACAAACT 59.426 39.130 0.00 0.00 0.00 2.66
263 264 3.913089 AGGGCGAAATCAAATCACAAAC 58.087 40.909 0.00 0.00 0.00 2.93
264 265 3.571828 TGAGGGCGAAATCAAATCACAAA 59.428 39.130 0.00 0.00 0.00 2.83
265 266 3.153130 TGAGGGCGAAATCAAATCACAA 58.847 40.909 0.00 0.00 0.00 3.33
266 267 2.749076 CTGAGGGCGAAATCAAATCACA 59.251 45.455 0.00 0.00 0.00 3.58
267 268 2.098117 CCTGAGGGCGAAATCAAATCAC 59.902 50.000 0.00 0.00 0.00 3.06
268 269 2.290896 ACCTGAGGGCGAAATCAAATCA 60.291 45.455 2.38 0.00 35.63 2.57
269 270 2.356069 GACCTGAGGGCGAAATCAAATC 59.644 50.000 2.38 0.00 35.63 2.17
270 271 2.290896 TGACCTGAGGGCGAAATCAAAT 60.291 45.455 2.38 0.00 35.63 2.32
271 272 1.073125 TGACCTGAGGGCGAAATCAAA 59.927 47.619 2.38 0.00 35.63 2.69
272 273 0.690192 TGACCTGAGGGCGAAATCAA 59.310 50.000 2.38 0.00 35.63 2.57
273 274 0.690192 TTGACCTGAGGGCGAAATCA 59.310 50.000 2.38 0.00 35.63 2.57
274 275 1.821216 TTTGACCTGAGGGCGAAATC 58.179 50.000 3.99 0.00 35.63 2.17
275 276 2.514458 ATTTGACCTGAGGGCGAAAT 57.486 45.000 11.88 9.76 35.63 2.17
276 277 3.278574 CATATTTGACCTGAGGGCGAAA 58.721 45.455 11.88 7.73 35.63 3.46
277 278 2.238646 ACATATTTGACCTGAGGGCGAA 59.761 45.455 10.00 10.00 35.63 4.70
278 279 1.837439 ACATATTTGACCTGAGGGCGA 59.163 47.619 2.38 0.00 35.63 5.54
279 280 1.942657 CACATATTTGACCTGAGGGCG 59.057 52.381 2.38 0.00 35.63 6.13
280 281 3.281727 TCACATATTTGACCTGAGGGC 57.718 47.619 2.38 0.00 35.63 5.19
281 282 6.039047 CAGAAATCACATATTTGACCTGAGGG 59.961 42.308 2.38 0.00 38.88 4.30
282 283 6.459298 GCAGAAATCACATATTTGACCTGAGG 60.459 42.308 15.94 0.00 0.00 3.86
283 284 6.459298 GGCAGAAATCACATATTTGACCTGAG 60.459 42.308 15.94 1.99 0.00 3.35
284 285 5.357878 GGCAGAAATCACATATTTGACCTGA 59.642 40.000 15.94 0.00 0.00 3.86
285 286 5.450965 GGGCAGAAATCACATATTTGACCTG 60.451 44.000 10.82 10.82 0.00 4.00
286 287 4.646492 GGGCAGAAATCACATATTTGACCT 59.354 41.667 0.00 0.00 0.00 3.85
287 288 4.402155 TGGGCAGAAATCACATATTTGACC 59.598 41.667 0.00 0.00 0.00 4.02
288 289 5.581126 TGGGCAGAAATCACATATTTGAC 57.419 39.130 0.00 0.00 0.00 3.18
289 290 4.098349 GCTGGGCAGAAATCACATATTTGA 59.902 41.667 0.00 0.00 0.00 2.69
290 291 4.098960 AGCTGGGCAGAAATCACATATTTG 59.901 41.667 0.00 0.00 0.00 2.32
291 292 4.098960 CAGCTGGGCAGAAATCACATATTT 59.901 41.667 5.57 0.00 0.00 1.40
292 293 3.635373 CAGCTGGGCAGAAATCACATATT 59.365 43.478 5.57 0.00 0.00 1.28
293 294 3.220110 CAGCTGGGCAGAAATCACATAT 58.780 45.455 5.57 0.00 0.00 1.78
294 295 2.025981 ACAGCTGGGCAGAAATCACATA 60.026 45.455 19.93 0.00 0.00 2.29
295 296 1.272313 ACAGCTGGGCAGAAATCACAT 60.272 47.619 19.93 0.00 0.00 3.21
296 297 0.111061 ACAGCTGGGCAGAAATCACA 59.889 50.000 19.93 0.00 0.00 3.58
297 298 0.524862 CACAGCTGGGCAGAAATCAC 59.475 55.000 19.93 0.00 0.00 3.06
298 299 0.609957 CCACAGCTGGGCAGAAATCA 60.610 55.000 19.93 0.00 33.23 2.57
299 300 0.322816 TCCACAGCTGGGCAGAAATC 60.323 55.000 19.93 0.00 38.25 2.17
300 301 0.323178 CTCCACAGCTGGGCAGAAAT 60.323 55.000 19.93 0.00 38.25 2.17
301 302 1.073722 CTCCACAGCTGGGCAGAAA 59.926 57.895 19.93 0.00 38.25 2.52
302 303 2.752358 CTCCACAGCTGGGCAGAA 59.248 61.111 19.93 0.00 38.25 3.02
303 304 2.746947 TACCTCCACAGCTGGGCAGA 62.747 60.000 19.93 6.71 38.25 4.26
304 305 2.293318 TACCTCCACAGCTGGGCAG 61.293 63.158 19.93 9.87 38.25 4.85
305 306 2.203922 TACCTCCACAGCTGGGCA 60.204 61.111 19.93 0.00 38.25 5.36
306 307 2.269241 GTACCTCCACAGCTGGGC 59.731 66.667 19.93 0.00 38.25 5.36
307 308 2.579201 CGTACCTCCACAGCTGGG 59.421 66.667 19.93 15.23 38.25 4.45
308 309 2.125512 GCGTACCTCCACAGCTGG 60.126 66.667 19.93 6.95 39.23 4.85
309 310 2.125512 GGCGTACCTCCACAGCTG 60.126 66.667 13.48 13.48 0.00 4.24
310 311 3.391382 GGGCGTACCTCCACAGCT 61.391 66.667 1.78 0.00 35.85 4.24
311 312 3.665675 CTGGGCGTACCTCCACAGC 62.666 68.421 0.00 0.00 41.11 4.40
312 313 2.579201 CTGGGCGTACCTCCACAG 59.421 66.667 0.00 0.00 41.11 3.66
313 314 3.702048 GCTGGGCGTACCTCCACA 61.702 66.667 0.00 0.00 41.11 4.17
324 325 2.665185 AACGTCTGTTCGCTGGGC 60.665 61.111 0.00 0.00 30.83 5.36
325 326 2.954753 GCAACGTCTGTTCGCTGGG 61.955 63.158 0.00 0.00 35.72 4.45
326 327 2.551270 GCAACGTCTGTTCGCTGG 59.449 61.111 0.00 0.00 35.72 4.85
327 328 2.168621 CGCAACGTCTGTTCGCTG 59.831 61.111 0.00 0.00 35.72 5.18
328 329 2.279252 ACGCAACGTCTGTTCGCT 60.279 55.556 0.00 0.00 33.69 4.93
329 330 2.128128 CACGCAACGTCTGTTCGC 60.128 61.111 0.00 0.00 38.32 4.70
330 331 2.544359 CCACGCAACGTCTGTTCG 59.456 61.111 0.00 0.00 38.32 3.95
331 332 1.155424 TTCCCACGCAACGTCTGTTC 61.155 55.000 0.00 0.00 38.32 3.18
332 333 1.153329 TTCCCACGCAACGTCTGTT 60.153 52.632 0.00 0.00 38.32 3.16
333 334 1.885850 GTTCCCACGCAACGTCTGT 60.886 57.895 0.00 0.00 38.32 3.41
334 335 2.935955 GTTCCCACGCAACGTCTG 59.064 61.111 0.00 0.00 38.32 3.51
335 336 2.660552 CGTTCCCACGCAACGTCT 60.661 61.111 0.00 0.00 41.39 4.18
344 345 6.980051 AACTGATAGATTAAACGTTCCCAC 57.020 37.500 0.00 0.00 0.00 4.61
345 346 7.989416 AAAACTGATAGATTAAACGTTCCCA 57.011 32.000 0.00 0.00 0.00 4.37
346 347 9.159364 AGTAAAACTGATAGATTAAACGTTCCC 57.841 33.333 0.00 0.00 0.00 3.97
389 390 8.737168 AAATTAGATGTGCAATACTTAGAGCA 57.263 30.769 0.00 0.00 34.10 4.26
390 391 9.050601 AGAAATTAGATGTGCAATACTTAGAGC 57.949 33.333 0.00 0.00 0.00 4.09
396 397 9.836864 TGACATAGAAATTAGATGTGCAATACT 57.163 29.630 4.91 0.00 33.99 2.12
399 400 9.961265 CAATGACATAGAAATTAGATGTGCAAT 57.039 29.630 4.91 0.00 33.99 3.56
400 401 9.176460 TCAATGACATAGAAATTAGATGTGCAA 57.824 29.630 4.91 0.00 33.99 4.08
401 402 8.735692 TCAATGACATAGAAATTAGATGTGCA 57.264 30.769 4.91 0.00 33.99 4.57
420 421 9.123709 GCACAAATCTTAACGTAAAATCAATGA 57.876 29.630 0.00 0.00 0.00 2.57
421 422 8.910666 TGCACAAATCTTAACGTAAAATCAATG 58.089 29.630 0.00 0.00 0.00 2.82
422 423 9.469807 TTGCACAAATCTTAACGTAAAATCAAT 57.530 25.926 0.00 0.00 0.00 2.57
423 424 8.858003 TTGCACAAATCTTAACGTAAAATCAA 57.142 26.923 0.00 0.00 0.00 2.57
424 425 8.132362 ACTTGCACAAATCTTAACGTAAAATCA 58.868 29.630 0.00 0.00 0.00 2.57
425 426 8.502161 ACTTGCACAAATCTTAACGTAAAATC 57.498 30.769 0.00 0.00 0.00 2.17
427 428 9.953697 AATACTTGCACAAATCTTAACGTAAAA 57.046 25.926 0.00 0.00 0.00 1.52
428 429 9.953697 AAATACTTGCACAAATCTTAACGTAAA 57.046 25.926 0.00 0.00 0.00 2.01
429 430 9.953697 AAAATACTTGCACAAATCTTAACGTAA 57.046 25.926 0.00 0.00 0.00 3.18
430 431 9.601971 GAAAATACTTGCACAAATCTTAACGTA 57.398 29.630 0.00 0.00 0.00 3.57
431 432 8.349983 AGAAAATACTTGCACAAATCTTAACGT 58.650 29.630 0.00 0.00 0.00 3.99
432 433 8.728088 AGAAAATACTTGCACAAATCTTAACG 57.272 30.769 0.00 0.00 0.00 3.18
436 437 9.822185 AAGAAAGAAAATACTTGCACAAATCTT 57.178 25.926 0.00 0.00 0.00 2.40
471 472 9.582431 CCCGAGCGAATTTTTCTCTTATATATA 57.418 33.333 0.00 0.00 0.00 0.86
472 473 8.095169 ACCCGAGCGAATTTTTCTCTTATATAT 58.905 33.333 0.00 0.00 0.00 0.86
473 474 7.439381 ACCCGAGCGAATTTTTCTCTTATATA 58.561 34.615 0.00 0.00 0.00 0.86
474 475 6.289064 ACCCGAGCGAATTTTTCTCTTATAT 58.711 36.000 0.00 0.00 0.00 0.86
475 476 5.667466 ACCCGAGCGAATTTTTCTCTTATA 58.333 37.500 0.00 0.00 0.00 0.98
476 477 4.514401 ACCCGAGCGAATTTTTCTCTTAT 58.486 39.130 0.00 0.00 0.00 1.73
477 478 3.934068 ACCCGAGCGAATTTTTCTCTTA 58.066 40.909 0.00 0.00 0.00 2.10
478 479 2.779506 ACCCGAGCGAATTTTTCTCTT 58.220 42.857 0.00 0.00 0.00 2.85
479 480 2.474410 ACCCGAGCGAATTTTTCTCT 57.526 45.000 0.00 0.00 0.00 3.10
480 481 3.259902 ACTACCCGAGCGAATTTTTCTC 58.740 45.455 0.00 0.00 0.00 2.87
481 482 3.329929 ACTACCCGAGCGAATTTTTCT 57.670 42.857 0.00 0.00 0.00 2.52
482 483 3.308053 GGTACTACCCGAGCGAATTTTTC 59.692 47.826 0.00 0.00 30.04 2.29
483 484 3.264947 GGTACTACCCGAGCGAATTTTT 58.735 45.455 0.00 0.00 30.04 1.94
484 485 2.234414 TGGTACTACCCGAGCGAATTTT 59.766 45.455 2.59 0.00 37.50 1.82
485 486 1.826720 TGGTACTACCCGAGCGAATTT 59.173 47.619 2.59 0.00 37.50 1.82
486 487 1.477553 TGGTACTACCCGAGCGAATT 58.522 50.000 2.59 0.00 37.50 2.17
487 488 1.135721 GTTGGTACTACCCGAGCGAAT 59.864 52.381 2.59 0.00 37.50 3.34
488 489 0.527565 GTTGGTACTACCCGAGCGAA 59.472 55.000 2.59 0.00 37.50 4.70
489 490 1.315257 GGTTGGTACTACCCGAGCGA 61.315 60.000 2.59 0.00 37.50 4.93
490 491 1.140375 GGTTGGTACTACCCGAGCG 59.860 63.158 2.59 0.00 37.50 5.03
491 492 1.519246 GGGTTGGTACTACCCGAGC 59.481 63.158 17.30 1.77 45.42 5.03
496 497 0.107993 GCGGAAGGGTTGGTACTACC 60.108 60.000 8.63 8.63 39.22 3.18
497 498 0.107993 GGCGGAAGGGTTGGTACTAC 60.108 60.000 0.00 0.00 0.00 2.73
498 499 1.266867 GGGCGGAAGGGTTGGTACTA 61.267 60.000 0.00 0.00 0.00 1.82
499 500 2.599757 GGGCGGAAGGGTTGGTACT 61.600 63.158 0.00 0.00 0.00 2.73
500 501 2.045634 GGGCGGAAGGGTTGGTAC 60.046 66.667 0.00 0.00 0.00 3.34
501 502 3.332385 GGGGCGGAAGGGTTGGTA 61.332 66.667 0.00 0.00 0.00 3.25
516 517 3.390967 CCCAATTTAAAGGCATAAGGGGG 59.609 47.826 0.00 0.00 0.00 5.40
517 518 3.181455 GCCCAATTTAAAGGCATAAGGGG 60.181 47.826 11.11 0.00 46.34 4.79
518 519 4.071961 GCCCAATTTAAAGGCATAAGGG 57.928 45.455 11.11 6.93 46.34 3.95
519 520 5.365314 TTAGGCCCAATTTAAAGGCATAAGG 59.635 40.000 15.87 2.70 45.16 2.69
520 521 6.478512 TTAGGCCCAATTTAAAGGCATAAG 57.521 37.500 15.87 0.00 45.16 1.73
525 526 4.394920 GCTTTTTAGGCCCAATTTAAAGGC 59.605 41.667 0.00 8.15 46.37 4.35
526 527 4.941263 GGCTTTTTAGGCCCAATTTAAAGG 59.059 41.667 0.00 0.00 43.49 3.11
595 596 9.838163 GCGTTGTTTTAACTTGTTAAAATTAGG 57.162 29.630 24.73 21.00 38.27 2.69
598 599 7.900864 GCAGCGTTGTTTTAACTTGTTAAAATT 59.099 29.630 24.73 10.94 38.27 1.82
599 600 7.063544 TGCAGCGTTGTTTTAACTTGTTAAAAT 59.936 29.630 24.73 11.91 38.27 1.82
600 601 6.365247 TGCAGCGTTGTTTTAACTTGTTAAAA 59.635 30.769 20.70 20.70 34.93 1.52
601 602 5.862323 TGCAGCGTTGTTTTAACTTGTTAAA 59.138 32.000 12.86 12.86 0.00 1.52
602 603 5.399858 TGCAGCGTTGTTTTAACTTGTTAA 58.600 33.333 0.00 2.22 0.00 2.01
603 604 4.982999 TGCAGCGTTGTTTTAACTTGTTA 58.017 34.783 0.00 0.00 0.00 2.41
604 605 3.839293 TGCAGCGTTGTTTTAACTTGTT 58.161 36.364 0.00 0.00 0.00 2.83
605 606 3.495670 TGCAGCGTTGTTTTAACTTGT 57.504 38.095 0.00 0.00 0.00 3.16
606 607 4.831741 TTTGCAGCGTTGTTTTAACTTG 57.168 36.364 0.00 0.00 0.00 3.16
607 608 5.847670 TTTTTGCAGCGTTGTTTTAACTT 57.152 30.435 0.00 0.00 0.00 2.66
643 644 1.407618 GACAGTCCCGCCTTTGTTTTT 59.592 47.619 0.00 0.00 0.00 1.94
644 645 1.029681 GACAGTCCCGCCTTTGTTTT 58.970 50.000 0.00 0.00 0.00 2.43
645 646 0.182775 AGACAGTCCCGCCTTTGTTT 59.817 50.000 0.00 0.00 0.00 2.83
646 647 1.053424 TAGACAGTCCCGCCTTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
647 648 1.276622 ATAGACAGTCCCGCCTTTGT 58.723 50.000 0.00 0.00 0.00 2.83
648 649 2.403252 AATAGACAGTCCCGCCTTTG 57.597 50.000 0.00 0.00 0.00 2.77
649 650 2.304761 TCAAATAGACAGTCCCGCCTTT 59.695 45.455 0.00 0.00 0.00 3.11
650 651 1.906574 TCAAATAGACAGTCCCGCCTT 59.093 47.619 0.00 0.00 0.00 4.35
651 652 1.207329 GTCAAATAGACAGTCCCGCCT 59.793 52.381 0.00 0.00 46.77 5.52
652 653 1.653151 GTCAAATAGACAGTCCCGCC 58.347 55.000 0.00 0.00 46.77 6.13
758 761 3.516615 CTGTTTTGGCGTTCTTTTTCCA 58.483 40.909 0.00 0.00 0.00 3.53
768 774 2.593436 CCCGACCTGTTTTGGCGT 60.593 61.111 0.00 0.00 0.00 5.68
778 786 2.026542 GGTCAAGTATTTTCCCCGACCT 60.027 50.000 0.00 0.00 38.70 3.85
850 858 1.304547 CCTGGAGGTCGACAGAGGT 60.305 63.158 18.91 0.00 36.86 3.85
959 974 2.403252 TCCCCTTTCTGATTCGCTTC 57.597 50.000 0.00 0.00 0.00 3.86
1121 1144 1.003355 ACCTGTGGATCCTGTTGCG 60.003 57.895 14.23 0.00 0.00 4.85
1274 1311 6.620678 TCAATGTTAATTTCCAGCTACTTGC 58.379 36.000 0.00 0.00 43.29 4.01
1277 1314 8.637986 TGTTTTCAATGTTAATTTCCAGCTACT 58.362 29.630 0.00 0.00 0.00 2.57
1279 1316 9.823647 TTTGTTTTCAATGTTAATTTCCAGCTA 57.176 25.926 0.00 0.00 39.70 3.32
1281 1318 9.949174 ATTTTGTTTTCAATGTTAATTTCCAGC 57.051 25.926 0.00 0.00 39.70 4.85
1875 2812 4.514066 GGTACTTTTCAATGTTCCGTGTCT 59.486 41.667 0.00 0.00 0.00 3.41
1890 2827 5.564550 AGAATGTGAGATGCAGGTACTTTT 58.435 37.500 0.00 0.00 34.60 2.27
2887 3893 7.542130 CCTAAATGTGGCTTGAAATTACTGTTC 59.458 37.037 0.00 0.00 0.00 3.18
3189 4195 4.035208 GGTTGTGATCGAGTTGTTGTCTTT 59.965 41.667 0.00 0.00 0.00 2.52
3205 4211 2.093606 TGGTGTTAACTCGTGGTTGTGA 60.094 45.455 7.22 0.00 38.75 3.58
3623 4630 1.151172 CCAACAAAGGGTGCAAACGC 61.151 55.000 0.00 0.00 0.00 4.84
3664 4671 3.445450 TGAAGGCACAAGCAAACAAGTAA 59.555 39.130 0.00 0.00 44.61 2.24
3920 4927 3.864789 AGATTTGTCCACAGTGTCCTT 57.135 42.857 0.00 0.00 0.00 3.36
3927 4934 4.261322 CCACAGTCAAAGATTTGTCCACAG 60.261 45.833 5.29 0.00 39.18 3.66
3937 4944 8.734386 GTTTCATATTCTTCCACAGTCAAAGAT 58.266 33.333 0.00 0.00 0.00 2.40
4347 5355 1.339291 GCTCAAAGACAAGCAGCCTTT 59.661 47.619 0.00 0.00 38.42 3.11
4495 5504 4.036734 TGAGCACAACAGTCCATCTTTTTC 59.963 41.667 0.00 0.00 0.00 2.29
4628 5638 1.072806 TGGAGTTCTCTGCTGCAACAT 59.927 47.619 3.02 0.00 31.49 2.71
4760 5770 4.406648 ACATCATCCACTTCTCGCAATA 57.593 40.909 0.00 0.00 0.00 1.90
4771 5781 5.734720 TCCAGTTTCTTCTACATCATCCAC 58.265 41.667 0.00 0.00 0.00 4.02
4781 5791 4.689062 ACCCTCATCTCCAGTTTCTTCTA 58.311 43.478 0.00 0.00 0.00 2.10
4868 5878 2.027192 GGGTCTTCTATTGTCAGTGCCA 60.027 50.000 0.00 0.00 0.00 4.92
4882 5892 5.437060 TGTTTTGGCTATATCTGGGTCTTC 58.563 41.667 0.00 0.00 0.00 2.87
4939 5949 8.445275 TTGTAGAACTTGTTCTGCTTTATTGA 57.555 30.769 24.22 7.11 35.18 2.57
5212 6238 3.153919 CCCTAAGCCTTTGTTGTTGCTA 58.846 45.455 0.00 0.00 32.82 3.49
5392 6465 6.485171 ACATGCCTCATAAAGTAGTCCTTTT 58.515 36.000 0.00 0.00 40.55 2.27
5396 6469 8.345565 CAAAATACATGCCTCATAAAGTAGTCC 58.654 37.037 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.