Multiple sequence alignment - TraesCS2D01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G423600 chr2D 100.000 8263 0 0 1 8263 536911889 536920151 0.000000e+00 15259
1 TraesCS2D01G423600 chr2B 95.117 5058 189 36 2278 7297 638963480 638968517 0.000000e+00 7919
2 TraesCS2D01G423600 chr2B 90.256 821 41 14 1314 2121 638962694 638963488 0.000000e+00 1037
3 TraesCS2D01G423600 chr2B 82.719 868 90 30 7346 8178 638968716 638969558 0.000000e+00 717
4 TraesCS2D01G423600 chr2B 81.301 738 73 26 1 721 638961346 638962035 9.440000e-149 538
5 TraesCS2D01G423600 chr2A 96.214 2932 95 9 2278 5198 679504644 679507570 0.000000e+00 4785
6 TraesCS2D01G423600 chr2A 90.502 3127 213 55 5196 8260 679507728 679510832 0.000000e+00 4052
7 TraesCS2D01G423600 chr2A 88.889 2142 153 39 1 2121 679502575 679504652 0.000000e+00 2558
8 TraesCS2D01G423600 chr7B 85.242 454 50 8 2739 3191 92207587 92207150 1.260000e-122 451
9 TraesCS2D01G423600 chr7B 88.764 89 9 1 2175 2263 665685444 665685531 3.150000e-19 108
10 TraesCS2D01G423600 chr7A 95.570 158 7 0 2122 2279 21196919 21197076 3.830000e-63 254
11 TraesCS2D01G423600 chr5B 79.501 361 71 2 116 475 704982570 704982928 3.830000e-63 254
12 TraesCS2D01G423600 chr5B 79.545 176 29 6 516 689 549652632 549652462 1.460000e-22 119
13 TraesCS2D01G423600 chr6B 94.479 163 9 0 2116 2278 659642992 659643154 1.380000e-62 252
14 TraesCS2D01G423600 chr3D 93.293 164 10 1 2115 2278 18498964 18498802 2.980000e-59 241
15 TraesCS2D01G423600 chr1D 94.268 157 8 1 2125 2280 473119568 473119412 1.070000e-58 239
16 TraesCS2D01G423600 chr4A 93.671 158 10 0 2122 2279 639038323 639038166 3.860000e-58 237
17 TraesCS2D01G423600 chr3B 92.994 157 10 1 2122 2278 29258185 29258030 2.320000e-55 228
18 TraesCS2D01G423600 chr7D 87.791 172 21 0 518 689 564374986 564375157 1.410000e-47 202
19 TraesCS2D01G423600 chr5D 85.227 176 26 0 514 689 551359856 551360031 1.830000e-41 182
20 TraesCS2D01G423600 chr5D 85.965 171 21 3 518 687 556874774 556874606 6.590000e-41 180
21 TraesCS2D01G423600 chr4B 84.884 172 25 1 518 689 182256340 182256510 1.100000e-38 172
22 TraesCS2D01G423600 chr1A 79.592 196 36 4 821 1013 460002002 460001808 4.020000e-28 137
23 TraesCS2D01G423600 chr1A 81.657 169 27 4 518 685 486684803 486684638 4.020000e-28 137
24 TraesCS2D01G423600 chr3A 78.889 180 25 10 518 691 386191578 386191750 8.770000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G423600 chr2D 536911889 536920151 8262 False 15259.000000 15259 100.000000 1 8263 1 chr2D.!!$F1 8262
1 TraesCS2D01G423600 chr2B 638961346 638969558 8212 False 2552.750000 7919 87.348250 1 8178 4 chr2B.!!$F1 8177
2 TraesCS2D01G423600 chr2A 679502575 679510832 8257 False 3798.333333 4785 91.868333 1 8260 3 chr2A.!!$F1 8259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 452 0.520847 GAGCTTCACTGCTTGCCTTC 59.479 55.000 0.00 0.00 44.17 3.46 F
2119 2309 0.035056 ACTCTGTAATGGGCAGGCAC 60.035 55.000 0.00 0.00 34.89 5.01 F
2120 2310 0.035152 CTCTGTAATGGGCAGGCACA 60.035 55.000 0.00 0.00 34.89 4.57 F
2170 2360 0.035458 CGGGCTGGCCTATAGGAAAG 59.965 60.000 23.61 18.03 37.39 2.62 F
2273 2463 0.179084 TACTTGCACATAGCTCCGCC 60.179 55.000 0.00 0.00 45.94 6.13 F
3895 4093 2.121116 GCATGATGCATGACAGCTTC 57.879 50.000 13.36 0.00 43.81 3.86 F
4815 5015 2.585330 TGTTGTCATGCTGGTTGTGAT 58.415 42.857 0.00 0.00 0.00 3.06 F
6564 6955 1.747355 CATTGCTTCTGGGTGGATGAC 59.253 52.381 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2341 0.035458 CTTTCCTATAGGCCAGCCCG 59.965 60.000 14.50 0.00 39.21 6.13 R
3895 4093 1.135024 GTGCCCTGCAAACCACATATG 60.135 52.381 0.00 0.00 41.47 1.78 R
4014 4212 7.508687 ACCAAAGAAAGGAAATAGCACAAAAT 58.491 30.769 0.00 0.00 0.00 1.82 R
4576 4776 4.088634 TCTTCCAAGGCAGCAACATTAAT 58.911 39.130 0.00 0.00 0.00 1.40 R
4617 4817 3.064820 GGTTGCTTCGTTTCAACTTCTCA 59.935 43.478 13.03 0.00 41.53 3.27 R
4866 5066 0.746063 CAGGTGGCAAAGCAAACTCA 59.254 50.000 0.00 0.00 0.00 3.41 R
6631 7022 0.245539 CAAACTTCATGGGCAGCCTG 59.754 55.000 12.43 2.31 0.00 4.85 R
7686 8262 0.249911 GCCCGTAGCCAGGTAATGAG 60.250 60.000 0.00 0.00 34.35 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.668237 GCCTCGAAATTCAAGCTCCTC 59.332 52.381 0.00 0.00 0.00 3.71
344 351 5.927954 TGATTTTGACGTACCAAGGTAAC 57.072 39.130 0.00 0.00 31.86 2.50
369 376 4.262765 CCCCTACAAGTTCTTTACCGTTCT 60.263 45.833 0.00 0.00 0.00 3.01
445 452 0.520847 GAGCTTCACTGCTTGCCTTC 59.479 55.000 0.00 0.00 44.17 3.46
461 468 1.208052 CCTTCGCTTCAAGGATCTCCA 59.792 52.381 0.00 0.00 45.41 3.86
480 502 2.420547 CCAGCGAAATCAGATCCAAGGA 60.421 50.000 0.00 0.00 0.00 3.36
482 504 3.881688 CAGCGAAATCAGATCCAAGGAAT 59.118 43.478 0.00 0.00 0.00 3.01
512 534 7.765695 AAACAACATGTTTCATCATAGAGGT 57.234 32.000 8.77 0.00 46.61 3.85
514 536 7.149569 ACAACATGTTTCATCATAGAGGTTG 57.850 36.000 8.77 0.00 35.77 3.77
515 537 5.824904 ACATGTTTCATCATAGAGGTTGC 57.175 39.130 0.00 0.00 0.00 4.17
591 613 4.080299 ACAGGGATGAAAGTAAGATCACCC 60.080 45.833 0.00 0.00 37.26 4.61
592 614 4.080356 CAGGGATGAAAGTAAGATCACCCA 60.080 45.833 0.00 0.00 38.39 4.51
593 615 4.540099 AGGGATGAAAGTAAGATCACCCAA 59.460 41.667 0.00 0.00 38.39 4.12
619 641 1.468520 CTAACCAAACATGACGGGCAG 59.531 52.381 0.00 0.00 0.00 4.85
962 1024 6.080648 TGAGGAAATGATAAATGCTCATGC 57.919 37.500 0.00 0.00 36.74 4.06
980 1042 6.200665 GCTCATGCATTCAAAAACTGTTTGTA 59.799 34.615 6.53 0.00 39.41 2.41
1156 1234 8.260270 TCATGAACTCAGATAATGTTTGTCAG 57.740 34.615 0.00 0.00 0.00 3.51
1195 1292 9.601217 TTTCTGAATTTTAAAAATTGTTCCCGA 57.399 25.926 4.44 1.97 0.00 5.14
1196 1293 9.601217 TTCTGAATTTTAAAAATTGTTCCCGAA 57.399 25.926 4.44 7.08 0.00 4.30
1197 1294 9.771534 TCTGAATTTTAAAAATTGTTCCCGAAT 57.228 25.926 4.44 0.00 0.00 3.34
1199 1296 9.771534 TGAATTTTAAAAATTGTTCCCGAATCT 57.228 25.926 4.44 0.00 0.00 2.40
1212 1309 8.801882 TGTTCCCGAATCTTATAAATTGTTCT 57.198 30.769 0.00 0.00 0.00 3.01
1213 1310 8.889717 TGTTCCCGAATCTTATAAATTGTTCTC 58.110 33.333 0.00 0.00 0.00 2.87
1214 1311 9.110502 GTTCCCGAATCTTATAAATTGTTCTCT 57.889 33.333 0.00 0.00 0.00 3.10
1284 1382 6.157211 CACTAATTAGGAGTGGCCGTATTAG 58.843 44.000 16.73 6.08 43.30 1.73
1302 1400 1.603171 GCCCCCGTTTTTACCCGAA 60.603 57.895 0.00 0.00 0.00 4.30
1427 1606 4.269523 TCGCACAAGGCCTTGGCT 62.270 61.111 41.04 24.20 44.45 4.75
1489 1668 1.595093 GCCGCCATTGCCAGTAAACT 61.595 55.000 0.00 0.00 0.00 2.66
1519 1698 4.740822 CTCCCACCGCCCCCAAAG 62.741 72.222 0.00 0.00 0.00 2.77
1547 1726 2.831742 CCTACTCGCCCTACCGCA 60.832 66.667 0.00 0.00 0.00 5.69
1548 1727 2.412112 CTACTCGCCCTACCGCAC 59.588 66.667 0.00 0.00 0.00 5.34
1566 1745 0.999712 ACCATCCCCAAACCCTACTG 59.000 55.000 0.00 0.00 0.00 2.74
1699 1878 1.014564 GTCTCGCTGCTGTGTTACCC 61.015 60.000 3.96 0.00 0.00 3.69
1701 1880 2.172483 CTCGCTGCTGTGTTACCCCT 62.172 60.000 3.96 0.00 0.00 4.79
1705 1884 1.228429 TGCTGTGTTACCCCTTGGC 60.228 57.895 0.00 0.00 33.59 4.52
1707 1886 1.072505 CTGTGTTACCCCTTGGCGT 59.927 57.895 0.00 0.00 33.59 5.68
1844 2023 0.250124 ACGCCAAAGTCATCCGAACA 60.250 50.000 0.00 0.00 0.00 3.18
1857 2036 0.442699 CCGAACAAAGTAAGCGCCTC 59.557 55.000 2.29 0.00 0.00 4.70
1859 2038 0.442699 GAACAAAGTAAGCGCCTCGG 59.557 55.000 2.29 0.00 0.00 4.63
1878 2062 2.532532 TTGGGCTCCTCTTGCTGCT 61.533 57.895 0.00 0.00 0.00 4.24
1891 2075 3.258872 TCTTGCTGCTTATGTGCCAATTT 59.741 39.130 0.00 0.00 0.00 1.82
1893 2077 5.127519 TCTTGCTGCTTATGTGCCAATTTAT 59.872 36.000 0.00 0.00 0.00 1.40
1894 2078 6.320926 TCTTGCTGCTTATGTGCCAATTTATA 59.679 34.615 0.00 0.00 0.00 0.98
1895 2079 6.462552 TGCTGCTTATGTGCCAATTTATAA 57.537 33.333 0.00 0.00 0.00 0.98
1896 2080 6.272318 TGCTGCTTATGTGCCAATTTATAAC 58.728 36.000 0.00 0.00 0.00 1.89
1897 2081 5.691754 GCTGCTTATGTGCCAATTTATAACC 59.308 40.000 0.00 0.00 0.00 2.85
1900 2084 8.470657 TGCTTATGTGCCAATTTATAACCATA 57.529 30.769 0.00 0.00 0.00 2.74
1948 2138 8.726870 TTAGATTTGTATTCCCTTTTACGGAG 57.273 34.615 0.00 0.00 0.00 4.63
1988 2178 5.061853 GGAAGCATAAGATGAGCTGATGAA 58.938 41.667 0.00 0.00 37.64 2.57
2031 2221 4.723309 AGCTTCAATTGGACAAGAGAGTT 58.277 39.130 5.42 0.00 0.00 3.01
2112 2302 3.801698 CACCTCATCACTCTGTAATGGG 58.198 50.000 0.00 0.00 0.00 4.00
2113 2303 2.171448 ACCTCATCACTCTGTAATGGGC 59.829 50.000 0.00 0.00 0.00 5.36
2114 2304 2.171237 CCTCATCACTCTGTAATGGGCA 59.829 50.000 0.00 0.00 0.00 5.36
2115 2305 3.464907 CTCATCACTCTGTAATGGGCAG 58.535 50.000 0.00 0.00 35.43 4.85
2116 2306 2.171237 TCATCACTCTGTAATGGGCAGG 59.829 50.000 0.00 0.00 34.89 4.85
2117 2307 0.253044 TCACTCTGTAATGGGCAGGC 59.747 55.000 0.00 0.00 34.89 4.85
2118 2308 0.035152 CACTCTGTAATGGGCAGGCA 60.035 55.000 0.00 0.00 34.89 4.75
2119 2309 0.035056 ACTCTGTAATGGGCAGGCAC 60.035 55.000 0.00 0.00 34.89 5.01
2120 2310 0.035152 CTCTGTAATGGGCAGGCACA 60.035 55.000 0.00 0.00 34.89 4.57
2121 2311 0.322456 TCTGTAATGGGCAGGCACAC 60.322 55.000 0.00 0.00 34.89 3.82
2122 2312 0.608856 CTGTAATGGGCAGGCACACA 60.609 55.000 0.00 0.00 29.15 3.72
2123 2313 0.608856 TGTAATGGGCAGGCACACAG 60.609 55.000 0.00 0.00 29.15 3.66
2124 2314 0.609131 GTAATGGGCAGGCACACAGT 60.609 55.000 0.00 0.00 29.15 3.55
2125 2315 0.988063 TAATGGGCAGGCACACAGTA 59.012 50.000 0.00 0.00 29.15 2.74
2126 2316 0.322816 AATGGGCAGGCACACAGTAG 60.323 55.000 0.00 0.00 29.15 2.57
2127 2317 2.747855 GGGCAGGCACACAGTAGC 60.748 66.667 0.00 0.00 0.00 3.58
2128 2318 3.121030 GGCAGGCACACAGTAGCG 61.121 66.667 0.00 0.00 0.00 4.26
2129 2319 3.121030 GCAGGCACACAGTAGCGG 61.121 66.667 0.00 0.00 0.00 5.52
2130 2320 2.656646 CAGGCACACAGTAGCGGA 59.343 61.111 0.00 0.00 0.00 5.54
2131 2321 1.446792 CAGGCACACAGTAGCGGAG 60.447 63.158 0.00 0.00 0.00 4.63
2148 2338 3.583806 CGGAGCTATAGATGGAAAGCTG 58.416 50.000 3.21 0.00 45.04 4.24
2149 2339 3.616076 CGGAGCTATAGATGGAAAGCTGG 60.616 52.174 3.21 0.00 45.04 4.85
2150 2340 3.307339 GGAGCTATAGATGGAAAGCTGGG 60.307 52.174 3.21 0.00 45.04 4.45
2151 2341 2.039613 AGCTATAGATGGAAAGCTGGGC 59.960 50.000 3.21 0.00 43.46 5.36
2152 2342 2.693069 CTATAGATGGAAAGCTGGGCG 58.307 52.381 0.00 0.00 0.00 6.13
2153 2343 0.109342 ATAGATGGAAAGCTGGGCGG 59.891 55.000 0.00 0.00 0.00 6.13
2154 2344 1.983119 TAGATGGAAAGCTGGGCGGG 61.983 60.000 0.00 0.00 0.00 6.13
2167 2357 2.923035 GCGGGCTGGCCTATAGGA 60.923 66.667 23.61 1.07 37.39 2.94
2168 2358 2.516888 GCGGGCTGGCCTATAGGAA 61.517 63.158 23.61 8.63 37.39 3.36
2169 2359 2.052047 GCGGGCTGGCCTATAGGAAA 62.052 60.000 23.61 8.26 37.39 3.13
2170 2360 0.035458 CGGGCTGGCCTATAGGAAAG 59.965 60.000 23.61 18.03 37.39 2.62
2171 2361 0.250945 GGGCTGGCCTATAGGAAAGC 60.251 60.000 26.65 26.65 41.59 3.51
2172 2362 3.331002 GCTGGCCTATAGGAAAGCC 57.669 57.895 25.24 18.41 45.96 4.35
2180 2370 6.918067 GGCCTATAGGAAAGCCAAATTATT 57.082 37.500 23.61 0.00 45.07 1.40
2181 2371 7.303182 GGCCTATAGGAAAGCCAAATTATTT 57.697 36.000 23.61 0.00 45.07 1.40
2182 2372 7.735917 GGCCTATAGGAAAGCCAAATTATTTT 58.264 34.615 23.61 0.00 45.07 1.82
2183 2373 8.210946 GGCCTATAGGAAAGCCAAATTATTTTT 58.789 33.333 23.61 0.00 45.07 1.94
2184 2374 9.261180 GCCTATAGGAAAGCCAAATTATTTTTC 57.739 33.333 23.61 0.00 37.39 2.29
2195 2385 8.302965 GCCAAATTATTTTTCTCATATGGCTC 57.697 34.615 2.13 0.00 44.64 4.70
2196 2386 7.927629 GCCAAATTATTTTTCTCATATGGCTCA 59.072 33.333 2.13 0.00 44.64 4.26
2197 2387 9.820725 CCAAATTATTTTTCTCATATGGCTCAA 57.179 29.630 2.13 0.00 0.00 3.02
2204 2394 8.668510 TTTTTCTCATATGGCTCAATCTACTC 57.331 34.615 2.13 0.00 0.00 2.59
2205 2395 5.991933 TCTCATATGGCTCAATCTACTCC 57.008 43.478 2.13 0.00 0.00 3.85
2206 2396 5.397360 TCTCATATGGCTCAATCTACTCCA 58.603 41.667 2.13 0.00 0.00 3.86
2207 2397 5.840693 TCTCATATGGCTCAATCTACTCCAA 59.159 40.000 2.13 0.00 0.00 3.53
2208 2398 5.858381 TCATATGGCTCAATCTACTCCAAC 58.142 41.667 2.13 0.00 0.00 3.77
2209 2399 5.366477 TCATATGGCTCAATCTACTCCAACA 59.634 40.000 2.13 0.00 0.00 3.33
2210 2400 3.334583 TGGCTCAATCTACTCCAACAC 57.665 47.619 0.00 0.00 0.00 3.32
2211 2401 2.027192 TGGCTCAATCTACTCCAACACC 60.027 50.000 0.00 0.00 0.00 4.16
2212 2402 2.237392 GGCTCAATCTACTCCAACACCT 59.763 50.000 0.00 0.00 0.00 4.00
2213 2403 3.526534 GCTCAATCTACTCCAACACCTC 58.473 50.000 0.00 0.00 0.00 3.85
2214 2404 3.055819 GCTCAATCTACTCCAACACCTCA 60.056 47.826 0.00 0.00 0.00 3.86
2215 2405 4.499183 CTCAATCTACTCCAACACCTCAC 58.501 47.826 0.00 0.00 0.00 3.51
2216 2406 4.160329 TCAATCTACTCCAACACCTCACT 58.840 43.478 0.00 0.00 0.00 3.41
2217 2407 4.021104 TCAATCTACTCCAACACCTCACTG 60.021 45.833 0.00 0.00 0.00 3.66
2218 2408 3.238788 TCTACTCCAACACCTCACTGA 57.761 47.619 0.00 0.00 0.00 3.41
2219 2409 3.779444 TCTACTCCAACACCTCACTGAT 58.221 45.455 0.00 0.00 0.00 2.90
2220 2410 4.160329 TCTACTCCAACACCTCACTGATT 58.840 43.478 0.00 0.00 0.00 2.57
2221 2411 3.864789 ACTCCAACACCTCACTGATTT 57.135 42.857 0.00 0.00 0.00 2.17
2222 2412 3.744660 ACTCCAACACCTCACTGATTTC 58.255 45.455 0.00 0.00 0.00 2.17
2223 2413 3.136443 ACTCCAACACCTCACTGATTTCA 59.864 43.478 0.00 0.00 0.00 2.69
2224 2414 4.136796 CTCCAACACCTCACTGATTTCAA 58.863 43.478 0.00 0.00 0.00 2.69
2225 2415 4.531854 TCCAACACCTCACTGATTTCAAA 58.468 39.130 0.00 0.00 0.00 2.69
2226 2416 4.338118 TCCAACACCTCACTGATTTCAAAC 59.662 41.667 0.00 0.00 0.00 2.93
2227 2417 4.339247 CCAACACCTCACTGATTTCAAACT 59.661 41.667 0.00 0.00 0.00 2.66
2228 2418 5.276270 CAACACCTCACTGATTTCAAACTG 58.724 41.667 0.00 0.00 0.00 3.16
2229 2419 3.885297 ACACCTCACTGATTTCAAACTGG 59.115 43.478 0.00 0.00 0.00 4.00
2230 2420 4.136796 CACCTCACTGATTTCAAACTGGA 58.863 43.478 0.00 0.00 0.00 3.86
2231 2421 4.023707 CACCTCACTGATTTCAAACTGGAC 60.024 45.833 0.00 0.00 0.00 4.02
2232 2422 4.136796 CCTCACTGATTTCAAACTGGACA 58.863 43.478 0.00 0.00 0.00 4.02
2233 2423 4.214971 CCTCACTGATTTCAAACTGGACAG 59.785 45.833 0.00 0.00 0.00 3.51
2234 2424 4.136796 TCACTGATTTCAAACTGGACAGG 58.863 43.478 4.14 0.00 0.00 4.00
2235 2425 3.254166 CACTGATTTCAAACTGGACAGGG 59.746 47.826 4.14 0.00 0.00 4.45
2236 2426 2.229784 CTGATTTCAAACTGGACAGGGC 59.770 50.000 4.14 0.00 0.00 5.19
2237 2427 1.200020 GATTTCAAACTGGACAGGGCG 59.800 52.381 4.14 0.00 0.00 6.13
2238 2428 0.821711 TTTCAAACTGGACAGGGCGG 60.822 55.000 4.14 0.00 0.00 6.13
2239 2429 2.672996 CAAACTGGACAGGGCGGG 60.673 66.667 4.14 0.00 0.00 6.13
2240 2430 4.660938 AAACTGGACAGGGCGGGC 62.661 66.667 4.14 0.00 0.00 6.13
2262 2452 2.861462 TGGCACAGTTTTACTTGCAC 57.139 45.000 12.53 6.21 35.46 4.57
2263 2453 2.095461 TGGCACAGTTTTACTTGCACA 58.905 42.857 12.53 7.81 35.46 4.57
2264 2454 2.692557 TGGCACAGTTTTACTTGCACAT 59.307 40.909 12.53 0.00 35.46 3.21
2265 2455 3.885901 TGGCACAGTTTTACTTGCACATA 59.114 39.130 12.53 0.00 35.46 2.29
2266 2456 4.023279 TGGCACAGTTTTACTTGCACATAG 60.023 41.667 12.53 0.00 35.46 2.23
2267 2457 3.914364 GCACAGTTTTACTTGCACATAGC 59.086 43.478 0.00 0.00 45.96 2.97
2268 2458 4.320494 GCACAGTTTTACTTGCACATAGCT 60.320 41.667 0.00 0.00 45.94 3.32
2269 2459 5.385617 CACAGTTTTACTTGCACATAGCTC 58.614 41.667 0.00 0.00 45.94 4.09
2270 2460 4.455877 ACAGTTTTACTTGCACATAGCTCC 59.544 41.667 0.00 0.00 45.94 4.70
2271 2461 3.684788 AGTTTTACTTGCACATAGCTCCG 59.315 43.478 0.00 0.00 45.94 4.63
2272 2462 1.651987 TTACTTGCACATAGCTCCGC 58.348 50.000 0.00 0.00 45.94 5.54
2273 2463 0.179084 TACTTGCACATAGCTCCGCC 60.179 55.000 0.00 0.00 45.94 6.13
2274 2464 2.124736 TTGCACATAGCTCCGCCC 60.125 61.111 0.00 0.00 45.94 6.13
2275 2465 3.697439 TTGCACATAGCTCCGCCCC 62.697 63.158 0.00 0.00 45.94 5.80
2276 2466 3.866582 GCACATAGCTCCGCCCCT 61.867 66.667 0.00 0.00 41.15 4.79
2289 2479 3.957586 CCCCTGCAGGCACAGTGA 61.958 66.667 28.39 0.00 35.83 3.41
2353 2544 7.039784 TGGAGTAAAGAAATTGCATTTGTAGCT 60.040 33.333 0.00 0.00 31.47 3.32
2358 2549 8.436046 AAAGAAATTGCATTTGTAGCTTGAAA 57.564 26.923 0.00 0.00 31.47 2.69
2543 2734 9.259832 ACTTTCTAAATAAATGGGATTCAGCTT 57.740 29.630 0.00 0.00 0.00 3.74
2544 2735 9.741647 CTTTCTAAATAAATGGGATTCAGCTTC 57.258 33.333 0.00 0.00 0.00 3.86
2545 2736 7.823745 TCTAAATAAATGGGATTCAGCTTCC 57.176 36.000 0.00 0.00 0.00 3.46
3062 3253 6.225981 AGAAAATAACAAATGATCTGCCCC 57.774 37.500 0.00 0.00 0.00 5.80
3124 3315 7.803279 ACGAGACAACAGTATGACAGATATA 57.197 36.000 0.00 0.00 39.69 0.86
3346 3537 2.639839 AGGTAGTGACATGCAAGAGGTT 59.360 45.455 0.00 0.00 0.00 3.50
3519 3710 4.152402 CCTTCCATATGCAACTACGTATGC 59.848 45.833 13.10 13.10 42.86 3.14
3782 3973 2.643551 TGGCTAGCAGCTTTGTTATCC 58.356 47.619 18.24 0.00 41.99 2.59
3784 3975 2.422093 GGCTAGCAGCTTTGTTATCCCT 60.422 50.000 18.24 0.00 41.99 4.20
3841 4039 5.815740 GCTTACAGGAGATTGTTTAATCCGA 59.184 40.000 0.00 0.00 42.99 4.55
3895 4093 2.121116 GCATGATGCATGACAGCTTC 57.879 50.000 13.36 0.00 43.81 3.86
4014 4212 9.396022 AGACATTTGAGTAAGAAAAGAAGTTCA 57.604 29.630 5.50 0.00 0.00 3.18
4059 4257 2.995258 GTTGGCTGTGCAAATAATGTGG 59.005 45.455 0.00 0.00 0.00 4.17
4586 4786 8.150945 TCTATCTAGGTCTGGAATTAATGTTGC 58.849 37.037 0.00 0.00 0.00 4.17
4815 5015 2.585330 TGTTGTCATGCTGGTTGTGAT 58.415 42.857 0.00 0.00 0.00 3.06
4832 5032 6.223120 GTTGTGATATTGCCTTTTGGAACTT 58.777 36.000 0.00 0.00 44.07 2.66
4841 5041 4.410555 TGCCTTTTGGAACTTTTTATGGGT 59.589 37.500 0.00 0.00 44.07 4.51
4866 5066 7.815068 GTGTATATCATTCGCTCTTAGGATTGT 59.185 37.037 0.00 0.00 0.00 2.71
4918 5137 3.691609 GCCCCTCTTCACTTCTTGTATTG 59.308 47.826 0.00 0.00 0.00 1.90
5080 5299 5.927281 ATTCCAGCTCATAAAGTTTGCAT 57.073 34.783 0.00 0.00 0.00 3.96
5081 5300 4.707030 TCCAGCTCATAAAGTTTGCATG 57.293 40.909 0.00 0.00 0.00 4.06
5103 5323 8.899771 GCATGTGTATTAGTTACTTAATTGGGT 58.100 33.333 0.00 0.00 0.00 4.51
5112 5332 3.512219 ACTTAATTGGGTTCGGGTTCA 57.488 42.857 0.00 0.00 0.00 3.18
5165 5385 9.706691 AAGTAATACAACGAATGGTATATCTGG 57.293 33.333 0.00 0.00 30.37 3.86
5181 5401 3.973206 TCTGGCGTTCAATTAGGAAGA 57.027 42.857 0.00 0.00 0.00 2.87
5229 5609 7.657023 AAAAACTCGTATAGATACCAGAGGT 57.343 36.000 1.87 0.00 40.16 3.85
5242 5622 6.611642 AGATACCAGAGGTTGTAATTCTGCTA 59.388 38.462 0.00 0.00 37.58 3.49
5323 5703 8.336080 GTTTACCCATCGTATCTTCTGAAATTC 58.664 37.037 0.00 0.00 0.00 2.17
5341 5721 8.909708 TGAAATTCCTGTCAATTTTTATAGCG 57.090 30.769 0.00 0.00 36.33 4.26
5660 6040 5.358160 GCATTTGTTATACTTGGCCTTCTCT 59.642 40.000 3.32 0.00 0.00 3.10
5775 6156 2.890808 TGCAGTCCCGATCTGTATTC 57.109 50.000 0.00 0.00 35.60 1.75
5987 6368 9.860898 AAACATATTAAGAAAGGCAAGAATGTC 57.139 29.630 0.00 0.00 0.00 3.06
6102 6483 2.498473 GGGTTCTCCTCCCCTCTATT 57.502 55.000 0.00 0.00 39.08 1.73
6278 6663 5.367945 AGGACAAGAGTTCAACCAAACTA 57.632 39.130 0.00 0.00 39.55 2.24
6290 6675 3.685836 ACCAAACTACTTGTGCGAAAC 57.314 42.857 0.00 0.00 32.65 2.78
6411 6796 3.999663 CAGATGAAGACCAAGAACAGTCC 59.000 47.826 0.00 0.00 33.29 3.85
6564 6955 1.747355 CATTGCTTCTGGGTGGATGAC 59.253 52.381 0.00 0.00 0.00 3.06
6575 6966 4.910195 TGGGTGGATGACAATGCTATATC 58.090 43.478 0.00 0.00 0.00 1.63
6586 6977 6.767902 TGACAATGCTATATCCTTCCTGAAAC 59.232 38.462 0.00 0.00 0.00 2.78
6631 7022 8.076714 GAAAACAATTTCAGATCAAAACCCTC 57.923 34.615 0.00 0.00 43.62 4.30
6755 7146 1.961394 TCTATGGCCGACATCTGGTAC 59.039 52.381 0.00 0.00 41.03 3.34
6777 7168 4.142049 ACGAACCTCTCTCATTCAAGATCC 60.142 45.833 0.00 0.00 0.00 3.36
6803 7194 2.689983 CCCTATGCTTCATGAACCAACC 59.310 50.000 3.38 0.00 0.00 3.77
6809 7200 0.950836 TTCATGAACCAACCGCAGTG 59.049 50.000 3.38 0.00 0.00 3.66
6824 7215 3.003275 CCGCAGTGTATTGACTTTGTTGT 59.997 43.478 0.00 0.00 0.00 3.32
6825 7216 4.497340 CCGCAGTGTATTGACTTTGTTGTT 60.497 41.667 0.00 0.00 0.00 2.83
7079 7470 1.759445 AGCATCACTCATCTAAGGCGT 59.241 47.619 0.00 0.00 0.00 5.68
7094 7485 3.791973 AGGCGTGTCTCTTCTATCTTG 57.208 47.619 0.00 0.00 0.00 3.02
7149 7541 6.695278 GCTTTTATCTTGTTGTGCTGTGTTTA 59.305 34.615 0.00 0.00 0.00 2.01
7151 7544 6.935741 TTATCTTGTTGTGCTGTGTTTAGT 57.064 33.333 0.00 0.00 0.00 2.24
7158 7551 1.532868 GTGCTGTGTTTAGTGCTGGAG 59.467 52.381 0.00 0.00 0.00 3.86
7165 7558 5.189928 TGTGTTTAGTGCTGGAGAAAAGAA 58.810 37.500 0.00 0.00 0.00 2.52
7169 7562 8.349983 GTGTTTAGTGCTGGAGAAAAGAAAATA 58.650 33.333 0.00 0.00 0.00 1.40
7173 7566 6.299141 AGTGCTGGAGAAAAGAAAATACAGA 58.701 36.000 0.00 0.00 0.00 3.41
7178 7571 8.138074 GCTGGAGAAAAGAAAATACAGAAACTT 58.862 33.333 0.00 0.00 0.00 2.66
7180 7573 9.184523 TGGAGAAAAGAAAATACAGAAACTTGA 57.815 29.630 0.00 0.00 0.00 3.02
7186 7579 8.579682 AAGAAAATACAGAAACTTGAATGTGC 57.420 30.769 0.00 0.00 0.00 4.57
7190 7583 7.698836 AATACAGAAACTTGAATGTGCAAAC 57.301 32.000 0.00 0.00 0.00 2.93
7192 7585 6.449635 ACAGAAACTTGAATGTGCAAACTA 57.550 33.333 0.00 0.00 0.00 2.24
7195 7588 7.275560 ACAGAAACTTGAATGTGCAAACTAAAC 59.724 33.333 0.00 0.00 0.00 2.01
7200 7595 7.940850 ACTTGAATGTGCAAACTAAACTACAT 58.059 30.769 0.00 0.00 0.00 2.29
7201 7596 8.076178 ACTTGAATGTGCAAACTAAACTACATC 58.924 33.333 0.00 0.00 0.00 3.06
7213 7608 1.459450 ACTACATCGCGCCCAAAAAT 58.541 45.000 0.00 0.00 0.00 1.82
7216 7611 1.215117 CATCGCGCCCAAAAATGGT 59.785 52.632 0.00 0.00 0.00 3.55
7222 7617 3.192844 TCGCGCCCAAAAATGGTATTTAA 59.807 39.130 0.00 0.00 0.00 1.52
7252 7650 6.984474 AGTCAAAATTACTCAGTTCGAGACAA 59.016 34.615 0.00 0.00 45.45 3.18
7260 7658 5.541845 ACTCAGTTCGAGACAAATTGATGA 58.458 37.500 0.00 0.00 45.45 2.92
7263 7661 5.757808 TCAGTTCGAGACAAATTGATGACAA 59.242 36.000 0.00 0.00 40.42 3.18
7287 7686 6.731292 AAAATCAGAAAAGGCCAAGTAGTT 57.269 33.333 5.01 0.00 0.00 2.24
7288 7687 5.966742 AATCAGAAAAGGCCAAGTAGTTC 57.033 39.130 5.01 0.00 0.00 3.01
7289 7688 4.706842 TCAGAAAAGGCCAAGTAGTTCT 57.293 40.909 5.01 1.01 0.00 3.01
7290 7689 4.389374 TCAGAAAAGGCCAAGTAGTTCTG 58.611 43.478 5.01 13.59 42.03 3.02
7291 7690 3.057946 CAGAAAAGGCCAAGTAGTTCTGC 60.058 47.826 5.01 0.00 36.59 4.26
7292 7691 1.911057 AAAGGCCAAGTAGTTCTGCC 58.089 50.000 5.01 11.02 42.48 4.85
7294 7693 2.859992 GGCCAAGTAGTTCTGCCTG 58.140 57.895 11.52 0.00 39.05 4.85
7296 7695 1.545651 GGCCAAGTAGTTCTGCCTGTT 60.546 52.381 11.52 0.00 39.05 3.16
7308 7717 5.413833 AGTTCTGCCTGTTCAAATCTGTATG 59.586 40.000 0.00 0.00 0.00 2.39
7311 7720 3.684305 TGCCTGTTCAAATCTGTATGACG 59.316 43.478 0.00 0.00 0.00 4.35
7318 7727 3.195610 TCAAATCTGTATGACGACCAGCT 59.804 43.478 0.00 0.00 0.00 4.24
7319 7728 3.895232 AATCTGTATGACGACCAGCTT 57.105 42.857 0.00 0.00 0.00 3.74
7320 7729 2.654749 TCTGTATGACGACCAGCTTG 57.345 50.000 0.00 0.00 0.00 4.01
7322 7731 2.094700 TCTGTATGACGACCAGCTTGTC 60.095 50.000 7.88 7.88 34.12 3.18
7323 7732 1.067142 TGTATGACGACCAGCTTGTCC 60.067 52.381 12.05 0.29 32.64 4.02
7324 7733 0.172578 TATGACGACCAGCTTGTCCG 59.827 55.000 12.05 9.63 32.64 4.79
7325 7734 2.432628 GACGACCAGCTTGTCCGG 60.433 66.667 12.05 0.00 31.35 5.14
7328 7737 2.027625 CGACCAGCTTGTCCGGTTC 61.028 63.158 12.05 0.00 31.63 3.62
7330 7739 0.951040 GACCAGCTTGTCCGGTTCTG 60.951 60.000 6.68 2.92 31.63 3.02
7379 7927 4.823442 TGTACATCAATGGGCAGATTCATC 59.177 41.667 0.00 0.00 0.00 2.92
7396 7944 7.876582 CAGATTCATCACTGCTATCCTATTTCA 59.123 37.037 0.00 0.00 0.00 2.69
7397 7945 7.877097 AGATTCATCACTGCTATCCTATTTCAC 59.123 37.037 0.00 0.00 0.00 3.18
7403 7951 6.324770 TCACTGCTATCCTATTTCACATCTCA 59.675 38.462 0.00 0.00 0.00 3.27
7404 7952 6.988580 CACTGCTATCCTATTTCACATCTCAA 59.011 38.462 0.00 0.00 0.00 3.02
7405 7953 7.496920 CACTGCTATCCTATTTCACATCTCAAA 59.503 37.037 0.00 0.00 0.00 2.69
7407 7955 8.387190 TGCTATCCTATTTCACATCTCAAATG 57.613 34.615 0.00 0.00 0.00 2.32
7411 7966 8.585471 ATCCTATTTCACATCTCAAATGTGTT 57.415 30.769 15.55 6.99 46.82 3.32
7414 7969 8.298854 CCTATTTCACATCTCAAATGTGTTTCA 58.701 33.333 15.55 0.00 46.82 2.69
7429 7984 6.258230 TGTGTTTCAAAATCTATCTGGCAG 57.742 37.500 8.58 8.58 0.00 4.85
7430 7985 5.098211 GTGTTTCAAAATCTATCTGGCAGC 58.902 41.667 10.34 0.00 0.00 5.25
7431 7986 5.012239 TGTTTCAAAATCTATCTGGCAGCT 58.988 37.500 10.34 2.00 0.00 4.24
7432 7987 5.124457 TGTTTCAAAATCTATCTGGCAGCTC 59.876 40.000 10.34 0.00 0.00 4.09
7447 8005 2.414825 GCAGCTCTCTCTACAAAAGCAC 59.585 50.000 0.00 0.00 35.42 4.40
7448 8006 3.657634 CAGCTCTCTCTACAAAAGCACA 58.342 45.455 0.00 0.00 35.42 4.57
7454 8012 6.202954 GCTCTCTCTACAAAAGCACAAAGTAA 59.797 38.462 0.00 0.00 33.21 2.24
7516 8076 8.792830 AAGCTATAAGCAACTTCTTTCATGTA 57.207 30.769 1.22 0.00 45.56 2.29
7518 8078 7.824289 AGCTATAAGCAACTTCTTTCATGTACA 59.176 33.333 0.00 0.00 45.56 2.90
7533 8093 3.637911 TGTACACCATGGTATTCACCC 57.362 47.619 19.28 2.14 45.11 4.61
7534 8094 2.913617 TGTACACCATGGTATTCACCCA 59.086 45.455 19.28 4.84 45.11 4.51
7535 8095 3.525609 TGTACACCATGGTATTCACCCAT 59.474 43.478 19.28 0.00 45.11 4.00
7536 8096 3.756082 ACACCATGGTATTCACCCATT 57.244 42.857 19.28 0.00 45.11 3.16
7538 8098 3.768757 ACACCATGGTATTCACCCATTTG 59.231 43.478 19.28 2.59 45.11 2.32
7541 8101 3.132646 CCATGGTATTCACCCATTTGTGG 59.867 47.826 2.57 0.00 45.11 4.17
7542 8102 3.816398 TGGTATTCACCCATTTGTGGA 57.184 42.857 0.00 0.00 45.11 4.02
7569 8131 6.159299 TCTATCTTGAAATCTCAGAGCTGG 57.841 41.667 0.00 0.00 31.69 4.85
7589 8151 9.237846 GAGCTGGCTGTAAATATGAAAAATAAC 57.762 33.333 0.00 0.00 0.00 1.89
7590 8152 7.915397 AGCTGGCTGTAAATATGAAAAATAACG 59.085 33.333 0.00 0.00 0.00 3.18
7609 8174 5.597813 AACGATCAAGTAAGTCAAGCAAG 57.402 39.130 0.00 0.00 0.00 4.01
7613 8178 3.808728 TCAAGTAAGTCAAGCAAGCAGT 58.191 40.909 0.00 0.00 0.00 4.40
7615 8180 4.991056 TCAAGTAAGTCAAGCAAGCAGTAG 59.009 41.667 0.00 0.00 0.00 2.57
7616 8181 3.931578 AGTAAGTCAAGCAAGCAGTAGG 58.068 45.455 0.00 0.00 0.00 3.18
7632 8197 4.576463 GCAGTAGGAATAATCAACACCTGG 59.424 45.833 0.00 0.00 32.90 4.45
7634 8199 6.051717 CAGTAGGAATAATCAACACCTGGAG 58.948 44.000 0.00 0.00 32.90 3.86
7647 8214 3.160585 TGGAGTCACCAGCCAAGG 58.839 61.111 0.00 0.00 44.64 3.61
7655 8222 3.011708 AGTCACCAGCCAAGGGATTTATT 59.988 43.478 0.00 0.00 0.00 1.40
7669 8245 5.963865 AGGGATTTATTATGCCAAAACCAGT 59.036 36.000 0.00 0.00 30.42 4.00
7670 8246 6.098266 AGGGATTTATTATGCCAAAACCAGTC 59.902 38.462 0.00 0.00 30.42 3.51
7676 8252 0.758310 TGCCAAAACCAGTCATGCCA 60.758 50.000 0.00 0.00 0.00 4.92
7677 8253 0.609662 GCCAAAACCAGTCATGCCAT 59.390 50.000 0.00 0.00 0.00 4.40
7678 8254 1.002315 GCCAAAACCAGTCATGCCATT 59.998 47.619 0.00 0.00 0.00 3.16
7679 8255 2.932187 GCCAAAACCAGTCATGCCATTC 60.932 50.000 0.00 0.00 0.00 2.67
7680 8256 2.299582 CCAAAACCAGTCATGCCATTCA 59.700 45.455 0.00 0.00 0.00 2.57
7686 8262 3.194116 ACCAGTCATGCCATTCAATTCAC 59.806 43.478 0.00 0.00 0.00 3.18
7700 8276 5.692115 TCAATTCACTCATTACCTGGCTA 57.308 39.130 0.00 0.00 0.00 3.93
7701 8277 5.428253 TCAATTCACTCATTACCTGGCTAC 58.572 41.667 0.00 0.00 0.00 3.58
7702 8278 3.520290 TTCACTCATTACCTGGCTACG 57.480 47.619 0.00 0.00 0.00 3.51
7703 8279 1.754803 TCACTCATTACCTGGCTACGG 59.245 52.381 0.00 0.00 0.00 4.02
7837 8413 2.289756 TGTACCGCTGCACCAGATTTTA 60.290 45.455 0.00 0.00 32.44 1.52
7838 8414 1.904287 ACCGCTGCACCAGATTTTAA 58.096 45.000 0.00 0.00 32.44 1.52
7839 8415 2.446435 ACCGCTGCACCAGATTTTAAT 58.554 42.857 0.00 0.00 32.44 1.40
7865 8443 4.647424 TTTTCCGTCAGCAACAAAGATT 57.353 36.364 0.00 0.00 0.00 2.40
7871 8449 3.248363 CGTCAGCAACAAAGATTCAGTGA 59.752 43.478 0.00 0.00 0.00 3.41
7876 8454 4.280174 AGCAACAAAGATTCAGTGATTGCT 59.720 37.500 17.87 17.87 44.92 3.91
7878 8456 5.107607 GCAACAAAGATTCAGTGATTGCTTG 60.108 40.000 14.98 12.85 38.48 4.01
7879 8457 4.553323 ACAAAGATTCAGTGATTGCTTGC 58.447 39.130 0.00 0.00 0.00 4.01
8181 8774 2.742372 ACGTCTGCAATGGCGGTC 60.742 61.111 4.92 0.00 46.81 4.79
8190 8783 0.600255 CAATGGCGGTCCGGAGTATC 60.600 60.000 14.38 0.00 34.14 2.24
8216 8809 2.185310 CTCCTACCACCCACAGCCAC 62.185 65.000 0.00 0.00 0.00 5.01
8229 8829 4.329545 GCCACAGGCCACGGAGAA 62.330 66.667 5.01 0.00 44.06 2.87
8237 8837 1.576421 GCCACGGAGAAACTGCAAG 59.424 57.895 0.00 0.00 42.29 4.01
8252 8852 1.202806 TGCAAGTGGAAGGAAGGTGAG 60.203 52.381 0.00 0.00 0.00 3.51
8260 8860 1.000955 GAAGGAAGGTGAGCGACTGAA 59.999 52.381 0.00 0.00 0.00 3.02
8261 8861 0.318762 AGGAAGGTGAGCGACTGAAC 59.681 55.000 0.00 0.00 0.00 3.18
8262 8862 1.009389 GGAAGGTGAGCGACTGAACG 61.009 60.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.744202 GAGCTTGAATTTCGAGGCTCAA 59.256 45.455 21.83 2.19 34.28 3.02
34 35 8.726650 TTTCATGTAATTTCGTTCATGAGTTG 57.273 30.769 0.00 0.00 44.38 3.16
84 85 6.895756 AGCCTCTATGATTACACCGGATATAA 59.104 38.462 9.46 3.64 0.00 0.98
326 333 2.224499 GGGGTTACCTTGGTACGTCAAA 60.224 50.000 0.00 0.00 36.80 2.69
358 365 1.798813 GACTGCCACAGAACGGTAAAG 59.201 52.381 0.78 0.00 35.18 1.85
369 376 0.682292 TATTGTGACCGACTGCCACA 59.318 50.000 0.00 0.00 38.83 4.17
445 452 1.150567 CGCTGGAGATCCTTGAAGCG 61.151 60.000 14.47 14.47 44.43 4.68
461 468 3.634397 TTCCTTGGATCTGATTTCGCT 57.366 42.857 0.00 0.00 0.00 4.93
591 613 4.385447 CGTCATGTTTGGTTAGGCAATTTG 59.615 41.667 0.00 0.00 0.00 2.32
592 614 4.555262 CGTCATGTTTGGTTAGGCAATTT 58.445 39.130 0.00 0.00 0.00 1.82
593 615 3.056891 CCGTCATGTTTGGTTAGGCAATT 60.057 43.478 0.00 0.00 0.00 2.32
619 641 0.747283 CATGCTCTCTCACTTGGGGC 60.747 60.000 0.00 0.00 0.00 5.80
743 791 1.615424 GGGAGGGGGTGAGCACTTA 60.615 63.158 0.16 0.00 0.00 2.24
774 833 2.440796 CACATGGGCCGGCTCATT 60.441 61.111 39.21 25.88 34.41 2.57
902 964 7.319142 TCATGAGAATTTATTGAATGCACGA 57.681 32.000 0.00 0.00 0.00 4.35
1090 1152 6.236915 GCAAACACTTTTTGAATTTTGCGAAC 60.237 34.615 0.91 0.00 39.40 3.95
1091 1153 5.792468 GCAAACACTTTTTGAATTTTGCGAA 59.208 32.000 0.91 0.00 39.40 4.70
1092 1154 5.319931 GCAAACACTTTTTGAATTTTGCGA 58.680 33.333 0.91 0.00 39.40 5.10
1093 1155 5.588195 GCAAACACTTTTTGAATTTTGCG 57.412 34.783 0.91 0.00 39.40 4.85
1094 1156 6.313252 TCAGCAAACACTTTTTGAATTTTGC 58.687 32.000 8.44 8.44 45.85 3.68
1095 1157 8.898983 AATCAGCAAACACTTTTTGAATTTTG 57.101 26.923 0.91 0.00 0.00 2.44
1207 1304 8.960591 GGGATATTTTTCTTGAATCAGAGAACA 58.039 33.333 7.16 0.84 32.01 3.18
1208 1305 8.409371 GGGGATATTTTTCTTGAATCAGAGAAC 58.591 37.037 7.16 0.00 32.01 3.01
1209 1306 7.283127 CGGGGATATTTTTCTTGAATCAGAGAA 59.717 37.037 4.55 4.55 0.00 2.87
1210 1307 6.767902 CGGGGATATTTTTCTTGAATCAGAGA 59.232 38.462 0.00 0.00 0.00 3.10
1211 1308 6.767902 TCGGGGATATTTTTCTTGAATCAGAG 59.232 38.462 0.00 0.00 0.00 3.35
1212 1309 6.658849 TCGGGGATATTTTTCTTGAATCAGA 58.341 36.000 0.00 0.00 0.00 3.27
1213 1310 6.543831 ACTCGGGGATATTTTTCTTGAATCAG 59.456 38.462 0.00 0.00 0.00 2.90
1214 1311 6.423182 ACTCGGGGATATTTTTCTTGAATCA 58.577 36.000 0.00 0.00 0.00 2.57
1252 1349 5.517904 CCACTCCTAATTAGTGCGTACTAC 58.482 45.833 13.27 0.00 42.47 2.73
1253 1350 4.037208 GCCACTCCTAATTAGTGCGTACTA 59.963 45.833 9.49 9.49 42.47 1.82
1254 1351 3.181478 GCCACTCCTAATTAGTGCGTACT 60.181 47.826 11.87 11.87 42.47 2.73
1284 1382 0.966875 ATTCGGGTAAAAACGGGGGC 60.967 55.000 0.00 0.00 0.00 5.80
1302 1400 2.044946 GCTCGAAGGGGTTGGCAT 60.045 61.111 0.00 0.00 0.00 4.40
1390 1569 1.053424 GATGGGACTGGGCCGTATAA 58.947 55.000 0.00 0.00 0.00 0.98
1427 1606 1.970114 GGGAGTCTCACCGTGTCGA 60.970 63.158 1.47 0.00 0.00 4.20
1489 1668 0.179040 GTGGGAGTCACCGGTTGAAA 60.179 55.000 2.97 0.00 40.39 2.69
1520 1699 0.251073 GGCGAGTAGGTTTTGGCCTA 59.749 55.000 3.32 0.00 39.94 3.93
1547 1726 0.999712 CAGTAGGGTTTGGGGATGGT 59.000 55.000 0.00 0.00 0.00 3.55
1548 1727 0.395724 GCAGTAGGGTTTGGGGATGG 60.396 60.000 0.00 0.00 0.00 3.51
1667 1846 2.563942 GAGACGACGCAGAGCAGT 59.436 61.111 0.00 0.00 0.00 4.40
1699 1878 2.791383 TGTCAAATCAAACGCCAAGG 57.209 45.000 0.00 0.00 0.00 3.61
1701 1880 2.865670 GCCATGTCAAATCAAACGCCAA 60.866 45.455 0.00 0.00 0.00 4.52
1705 1884 4.406069 CACTAGCCATGTCAAATCAAACG 58.594 43.478 0.00 0.00 0.00 3.60
1707 1886 4.439305 GCACTAGCCATGTCAAATCAAA 57.561 40.909 0.00 0.00 33.58 2.69
1844 2023 0.953960 CCAACCGAGGCGCTTACTTT 60.954 55.000 7.64 0.00 0.00 2.66
1857 2036 2.747855 GCAAGAGGAGCCCAACCG 60.748 66.667 0.00 0.00 0.00 4.44
1859 2038 2.338785 GCAGCAAGAGGAGCCCAAC 61.339 63.158 0.00 0.00 0.00 3.77
1895 2079 8.761497 CGTTCGATTCTAAACACATAATATGGT 58.239 33.333 5.16 0.00 33.60 3.55
1896 2080 8.974408 TCGTTCGATTCTAAACACATAATATGG 58.026 33.333 5.16 0.00 33.60 2.74
1923 2113 7.281549 GCTCCGTAAAAGGGAATACAAATCTAA 59.718 37.037 0.00 0.00 30.93 2.10
1988 2178 7.029053 AGCTACCATTTTCCCTACTAACTTT 57.971 36.000 0.00 0.00 0.00 2.66
2031 2221 7.482169 ACAAGGATACAGAAGTGAGATGTTA 57.518 36.000 0.00 0.00 41.41 2.41
2112 2302 3.121030 CCGCTACTGTGTGCCTGC 61.121 66.667 0.00 0.00 0.00 4.85
2113 2303 1.446792 CTCCGCTACTGTGTGCCTG 60.447 63.158 0.00 0.00 0.00 4.85
2114 2304 2.973899 CTCCGCTACTGTGTGCCT 59.026 61.111 0.00 0.00 0.00 4.75
2115 2305 1.945354 TAGCTCCGCTACTGTGTGCC 61.945 60.000 0.00 0.00 40.44 5.01
2116 2306 0.103208 ATAGCTCCGCTACTGTGTGC 59.897 55.000 0.00 0.00 44.24 4.57
2117 2307 2.879026 TCTATAGCTCCGCTACTGTGTG 59.121 50.000 0.00 0.00 44.24 3.82
2118 2308 3.210232 TCTATAGCTCCGCTACTGTGT 57.790 47.619 0.00 0.00 44.24 3.72
2119 2309 3.119673 CCATCTATAGCTCCGCTACTGTG 60.120 52.174 0.00 0.00 44.24 3.66
2120 2310 3.085533 CCATCTATAGCTCCGCTACTGT 58.914 50.000 0.00 0.00 44.24 3.55
2121 2311 3.348119 TCCATCTATAGCTCCGCTACTG 58.652 50.000 0.00 0.00 44.24 2.74
2122 2312 3.722908 TCCATCTATAGCTCCGCTACT 57.277 47.619 0.00 0.00 44.24 2.57
2123 2313 4.739195 CTTTCCATCTATAGCTCCGCTAC 58.261 47.826 0.00 0.00 44.24 3.58
2124 2314 3.193691 GCTTTCCATCTATAGCTCCGCTA 59.806 47.826 0.00 0.00 45.55 4.26
2125 2315 2.028567 GCTTTCCATCTATAGCTCCGCT 60.029 50.000 0.00 0.00 43.41 5.52
2126 2316 2.028567 AGCTTTCCATCTATAGCTCCGC 60.029 50.000 0.00 0.00 39.67 5.54
2127 2317 3.583806 CAGCTTTCCATCTATAGCTCCG 58.416 50.000 0.00 0.00 41.76 4.63
2128 2318 3.307339 CCCAGCTTTCCATCTATAGCTCC 60.307 52.174 0.00 0.00 41.76 4.70
2129 2319 3.867984 GCCCAGCTTTCCATCTATAGCTC 60.868 52.174 0.00 0.00 41.76 4.09
2130 2320 2.039613 GCCCAGCTTTCCATCTATAGCT 59.960 50.000 0.00 0.00 44.34 3.32
2131 2321 2.431454 GCCCAGCTTTCCATCTATAGC 58.569 52.381 0.00 0.00 0.00 2.97
2132 2322 2.613977 CCGCCCAGCTTTCCATCTATAG 60.614 54.545 0.00 0.00 0.00 1.31
2133 2323 1.347707 CCGCCCAGCTTTCCATCTATA 59.652 52.381 0.00 0.00 0.00 1.31
2134 2324 0.109342 CCGCCCAGCTTTCCATCTAT 59.891 55.000 0.00 0.00 0.00 1.98
2135 2325 1.526887 CCGCCCAGCTTTCCATCTA 59.473 57.895 0.00 0.00 0.00 1.98
2136 2326 2.273449 CCGCCCAGCTTTCCATCT 59.727 61.111 0.00 0.00 0.00 2.90
2137 2327 2.830370 CCCGCCCAGCTTTCCATC 60.830 66.667 0.00 0.00 0.00 3.51
2150 2340 2.052047 TTTCCTATAGGCCAGCCCGC 62.052 60.000 14.50 0.00 39.21 6.13
2151 2341 0.035458 CTTTCCTATAGGCCAGCCCG 59.965 60.000 14.50 0.00 39.21 6.13
2152 2342 0.250945 GCTTTCCTATAGGCCAGCCC 60.251 60.000 22.74 5.34 35.28 5.19
2153 2343 0.250945 GGCTTTCCTATAGGCCAGCC 60.251 60.000 30.66 30.66 46.19 4.85
2154 2344 3.331002 GGCTTTCCTATAGGCCAGC 57.669 57.895 24.20 24.20 43.59 4.85
2157 2347 6.918067 AATAATTTGGCTTTCCTATAGGCC 57.082 37.500 14.50 11.93 44.31 5.19
2158 2348 9.261180 GAAAAATAATTTGGCTTTCCTATAGGC 57.739 33.333 14.50 1.94 38.56 3.93
2167 2357 9.112725 GCCATATGAGAAAAATAATTTGGCTTT 57.887 29.630 3.65 0.00 41.29 3.51
2168 2358 8.667076 GCCATATGAGAAAAATAATTTGGCTT 57.333 30.769 3.65 0.00 41.29 4.35
2169 2359 8.026396 AGCCATATGAGAAAAATAATTTGGCT 57.974 30.769 3.65 11.24 46.25 4.75
2170 2360 7.927629 TGAGCCATATGAGAAAAATAATTTGGC 59.072 33.333 3.65 7.59 43.41 4.52
2171 2361 9.820725 TTGAGCCATATGAGAAAAATAATTTGG 57.179 29.630 3.65 0.00 0.00 3.28
2178 2368 9.282569 GAGTAGATTGAGCCATATGAGAAAAAT 57.717 33.333 3.65 0.00 0.00 1.82
2179 2369 7.716998 GGAGTAGATTGAGCCATATGAGAAAAA 59.283 37.037 3.65 0.00 0.00 1.94
2180 2370 7.147497 TGGAGTAGATTGAGCCATATGAGAAAA 60.147 37.037 3.65 0.00 0.00 2.29
2181 2371 6.327365 TGGAGTAGATTGAGCCATATGAGAAA 59.673 38.462 3.65 0.00 0.00 2.52
2182 2372 5.840693 TGGAGTAGATTGAGCCATATGAGAA 59.159 40.000 3.65 0.00 0.00 2.87
2183 2373 5.397360 TGGAGTAGATTGAGCCATATGAGA 58.603 41.667 3.65 0.00 0.00 3.27
2184 2374 5.735285 TGGAGTAGATTGAGCCATATGAG 57.265 43.478 3.65 0.00 0.00 2.90
2185 2375 5.366477 TGTTGGAGTAGATTGAGCCATATGA 59.634 40.000 3.65 0.00 0.00 2.15
2186 2376 5.468072 GTGTTGGAGTAGATTGAGCCATATG 59.532 44.000 0.00 0.00 0.00 1.78
2187 2377 5.455326 GGTGTTGGAGTAGATTGAGCCATAT 60.455 44.000 0.00 0.00 0.00 1.78
2188 2378 4.141711 GGTGTTGGAGTAGATTGAGCCATA 60.142 45.833 0.00 0.00 0.00 2.74
2189 2379 3.370953 GGTGTTGGAGTAGATTGAGCCAT 60.371 47.826 0.00 0.00 0.00 4.40
2190 2380 2.027192 GGTGTTGGAGTAGATTGAGCCA 60.027 50.000 0.00 0.00 0.00 4.75
2191 2381 2.237392 AGGTGTTGGAGTAGATTGAGCC 59.763 50.000 0.00 0.00 0.00 4.70
2192 2382 3.055819 TGAGGTGTTGGAGTAGATTGAGC 60.056 47.826 0.00 0.00 0.00 4.26
2193 2383 4.221703 AGTGAGGTGTTGGAGTAGATTGAG 59.778 45.833 0.00 0.00 0.00 3.02
2194 2384 4.021104 CAGTGAGGTGTTGGAGTAGATTGA 60.021 45.833 0.00 0.00 0.00 2.57
2195 2385 4.021104 TCAGTGAGGTGTTGGAGTAGATTG 60.021 45.833 0.00 0.00 0.00 2.67
2196 2386 4.160329 TCAGTGAGGTGTTGGAGTAGATT 58.840 43.478 0.00 0.00 0.00 2.40
2197 2387 3.779444 TCAGTGAGGTGTTGGAGTAGAT 58.221 45.455 0.00 0.00 0.00 1.98
2198 2388 3.238788 TCAGTGAGGTGTTGGAGTAGA 57.761 47.619 0.00 0.00 0.00 2.59
2199 2389 4.543590 AATCAGTGAGGTGTTGGAGTAG 57.456 45.455 0.00 0.00 0.00 2.57
2200 2390 4.346709 TGAAATCAGTGAGGTGTTGGAGTA 59.653 41.667 0.00 0.00 0.00 2.59
2201 2391 3.136443 TGAAATCAGTGAGGTGTTGGAGT 59.864 43.478 0.00 0.00 0.00 3.85
2202 2392 3.743521 TGAAATCAGTGAGGTGTTGGAG 58.256 45.455 0.00 0.00 0.00 3.86
2203 2393 3.855255 TGAAATCAGTGAGGTGTTGGA 57.145 42.857 0.00 0.00 0.00 3.53
2204 2394 4.339247 AGTTTGAAATCAGTGAGGTGTTGG 59.661 41.667 0.00 0.00 0.00 3.77
2205 2395 5.276270 CAGTTTGAAATCAGTGAGGTGTTG 58.724 41.667 0.00 0.00 0.00 3.33
2206 2396 4.339247 CCAGTTTGAAATCAGTGAGGTGTT 59.661 41.667 0.00 0.00 0.00 3.32
2207 2397 3.885297 CCAGTTTGAAATCAGTGAGGTGT 59.115 43.478 0.00 0.00 0.00 4.16
2208 2398 4.023707 GTCCAGTTTGAAATCAGTGAGGTG 60.024 45.833 0.00 0.00 0.00 4.00
2209 2399 4.137543 GTCCAGTTTGAAATCAGTGAGGT 58.862 43.478 0.00 0.00 0.00 3.85
2210 2400 4.136796 TGTCCAGTTTGAAATCAGTGAGG 58.863 43.478 0.00 0.00 0.00 3.86
2211 2401 4.214971 CCTGTCCAGTTTGAAATCAGTGAG 59.785 45.833 0.00 0.00 0.00 3.51
2212 2402 4.136796 CCTGTCCAGTTTGAAATCAGTGA 58.863 43.478 0.00 0.00 0.00 3.41
2213 2403 3.254166 CCCTGTCCAGTTTGAAATCAGTG 59.746 47.826 0.00 0.00 0.00 3.66
2214 2404 3.490348 CCCTGTCCAGTTTGAAATCAGT 58.510 45.455 0.00 0.00 0.00 3.41
2215 2405 2.229784 GCCCTGTCCAGTTTGAAATCAG 59.770 50.000 0.00 0.00 0.00 2.90
2216 2406 2.238521 GCCCTGTCCAGTTTGAAATCA 58.761 47.619 0.00 0.00 0.00 2.57
2217 2407 1.200020 CGCCCTGTCCAGTTTGAAATC 59.800 52.381 0.00 0.00 0.00 2.17
2218 2408 1.247567 CGCCCTGTCCAGTTTGAAAT 58.752 50.000 0.00 0.00 0.00 2.17
2219 2409 0.821711 CCGCCCTGTCCAGTTTGAAA 60.822 55.000 0.00 0.00 0.00 2.69
2220 2410 1.228124 CCGCCCTGTCCAGTTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
2221 2411 2.429930 CCGCCCTGTCCAGTTTGA 59.570 61.111 0.00 0.00 0.00 2.69
2222 2412 2.672996 CCCGCCCTGTCCAGTTTG 60.673 66.667 0.00 0.00 0.00 2.93
2223 2413 4.660938 GCCCGCCCTGTCCAGTTT 62.661 66.667 0.00 0.00 0.00 2.66
2236 2426 1.247419 TAAAACTGTGCCATGGCCCG 61.247 55.000 33.44 22.43 41.09 6.13
2237 2427 0.246360 GTAAAACTGTGCCATGGCCC 59.754 55.000 33.44 23.88 41.09 5.80
2238 2428 1.256812 AGTAAAACTGTGCCATGGCC 58.743 50.000 33.44 23.83 41.09 5.36
2239 2429 2.676076 CAAGTAAAACTGTGCCATGGC 58.324 47.619 30.54 30.54 42.35 4.40
2240 2430 2.035704 TGCAAGTAAAACTGTGCCATGG 59.964 45.455 7.63 7.63 34.00 3.66
2241 2431 3.052036 GTGCAAGTAAAACTGTGCCATG 58.948 45.455 0.00 0.00 34.00 3.66
2242 2432 2.692557 TGTGCAAGTAAAACTGTGCCAT 59.307 40.909 0.00 0.00 34.00 4.40
2243 2433 2.095461 TGTGCAAGTAAAACTGTGCCA 58.905 42.857 0.00 6.56 34.00 4.92
2244 2434 2.861462 TGTGCAAGTAAAACTGTGCC 57.139 45.000 0.00 4.91 34.00 5.01
2245 2435 3.914364 GCTATGTGCAAGTAAAACTGTGC 59.086 43.478 0.00 7.05 42.31 4.57
2246 2436 5.362556 AGCTATGTGCAAGTAAAACTGTG 57.637 39.130 0.00 0.00 45.94 3.66
2247 2437 4.455877 GGAGCTATGTGCAAGTAAAACTGT 59.544 41.667 0.00 0.00 45.94 3.55
2248 2438 4.436050 CGGAGCTATGTGCAAGTAAAACTG 60.436 45.833 0.00 0.00 45.94 3.16
2249 2439 3.684788 CGGAGCTATGTGCAAGTAAAACT 59.315 43.478 0.00 0.00 45.94 2.66
2250 2440 4.003519 CGGAGCTATGTGCAAGTAAAAC 57.996 45.455 0.00 0.00 45.94 2.43
2272 2462 2.981914 TTTCACTGTGCCTGCAGGGG 62.982 60.000 33.46 11.62 40.16 4.79
2273 2463 1.529010 TTTCACTGTGCCTGCAGGG 60.529 57.895 33.46 19.22 41.06 4.45
2274 2464 1.656441 GTTTCACTGTGCCTGCAGG 59.344 57.895 29.34 29.34 40.59 4.85
2275 2465 0.820891 AGGTTTCACTGTGCCTGCAG 60.821 55.000 6.78 6.78 41.92 4.41
2276 2466 1.102809 CAGGTTTCACTGTGCCTGCA 61.103 55.000 16.50 0.00 41.46 4.41
2289 2479 2.291282 TGGTGTGGTTCAAGTCAGGTTT 60.291 45.455 0.00 0.00 0.00 3.27
2528 2719 5.089434 AGAAAAGGAAGCTGAATCCCATTT 58.911 37.500 0.00 2.35 37.71 2.32
2529 2720 4.681484 AGAAAAGGAAGCTGAATCCCATT 58.319 39.130 0.00 0.00 37.71 3.16
2530 2721 4.017683 AGAGAAAAGGAAGCTGAATCCCAT 60.018 41.667 0.00 0.00 37.71 4.00
2531 2722 3.331889 AGAGAAAAGGAAGCTGAATCCCA 59.668 43.478 0.00 0.00 37.71 4.37
2532 2723 3.961849 AGAGAAAAGGAAGCTGAATCCC 58.038 45.455 0.00 0.00 37.71 3.85
2533 2724 5.973899 AAAGAGAAAAGGAAGCTGAATCC 57.026 39.130 0.00 0.00 37.22 3.01
2534 2725 6.743110 ACAAAAGAGAAAAGGAAGCTGAATC 58.257 36.000 0.00 0.00 0.00 2.52
2536 2727 7.823745 ATACAAAAGAGAAAAGGAAGCTGAA 57.176 32.000 0.00 0.00 0.00 3.02
2537 2728 7.117812 CGTATACAAAAGAGAAAAGGAAGCTGA 59.882 37.037 3.32 0.00 0.00 4.26
2539 2730 6.935208 ACGTATACAAAAGAGAAAAGGAAGCT 59.065 34.615 3.32 0.00 0.00 3.74
2540 2731 7.130303 ACGTATACAAAAGAGAAAAGGAAGC 57.870 36.000 3.32 0.00 0.00 3.86
2543 2734 9.158233 CCAATACGTATACAAAAGAGAAAAGGA 57.842 33.333 8.83 0.00 0.00 3.36
2544 2735 9.158233 TCCAATACGTATACAAAAGAGAAAAGG 57.842 33.333 8.83 0.00 0.00 3.11
2937 3128 2.838736 CTACCGTGCTATCTTTGGCAT 58.161 47.619 0.00 0.00 41.73 4.40
3056 3247 1.304713 AAGCATCTTGTGGGGGCAG 60.305 57.895 0.00 0.00 0.00 4.85
3062 3253 2.419324 GCTTCTCTGAAGCATCTTGTGG 59.581 50.000 22.54 0.00 42.56 4.17
3346 3537 4.058124 CGTCTTGGTTGTCAGAATCTTCA 58.942 43.478 0.00 0.00 0.00 3.02
3382 3573 7.118101 GCATGATTTTCATCTTTTTGTTGGCTA 59.882 33.333 0.00 0.00 34.28 3.93
3519 3710 8.836413 TCTGAAGTAATGACACCAAGTAAAAAG 58.164 33.333 0.00 0.00 0.00 2.27
3571 3762 6.503524 TGTAAGAAAAGGCAAACAGCTAAAG 58.496 36.000 0.00 0.00 44.79 1.85
3809 4007 4.284490 ACAATCTCCTGTAAGCTGAACTGA 59.716 41.667 7.64 1.73 0.00 3.41
3841 4039 5.010820 GGAGGAAAGTAAGTCTGTACAGTGT 59.989 44.000 21.99 11.08 0.00 3.55
3895 4093 1.135024 GTGCCCTGCAAACCACATATG 60.135 52.381 0.00 0.00 41.47 1.78
4014 4212 7.508687 ACCAAAGAAAGGAAATAGCACAAAAT 58.491 30.769 0.00 0.00 0.00 1.82
4576 4776 4.088634 TCTTCCAAGGCAGCAACATTAAT 58.911 39.130 0.00 0.00 0.00 1.40
4586 4786 4.954092 GAAGTATGTTCTTCCAAGGCAG 57.046 45.455 0.00 0.00 38.18 4.85
4617 4817 3.064820 GGTTGCTTCGTTTCAACTTCTCA 59.935 43.478 13.03 0.00 41.53 3.27
4719 4919 3.449737 TCGGTGGGAGAACGATTTTATCT 59.550 43.478 0.00 0.00 0.00 1.98
4729 4929 1.242665 ACTCTCGTCGGTGGGAGAAC 61.243 60.000 11.04 0.00 38.72 3.01
4815 5015 7.164803 CCCATAAAAAGTTCCAAAAGGCAATA 58.835 34.615 0.00 0.00 0.00 1.90
4832 5032 7.450074 AGAGCGAATGATATACACCCATAAAA 58.550 34.615 0.00 0.00 0.00 1.52
4841 5041 7.814587 CACAATCCTAAGAGCGAATGATATACA 59.185 37.037 0.00 0.00 0.00 2.29
4866 5066 0.746063 CAGGTGGCAAAGCAAACTCA 59.254 50.000 0.00 0.00 0.00 3.41
4918 5137 7.931275 AGACACCAAAAGAAATAACTCAGAAC 58.069 34.615 0.00 0.00 0.00 3.01
5055 5274 8.570488 CATGCAAACTTTATGAGCTGGAATATA 58.430 33.333 0.00 0.00 0.00 0.86
5080 5299 9.153721 CGAACCCAATTAAGTAACTAATACACA 57.846 33.333 0.00 0.00 36.94 3.72
5081 5300 8.606602 CCGAACCCAATTAAGTAACTAATACAC 58.393 37.037 0.00 0.00 36.94 2.90
5146 5366 3.181469 ACGCCAGATATACCATTCGTTGT 60.181 43.478 0.00 0.00 0.00 3.32
5242 5622 6.264067 GCAGAGTGGCTTAAAATATCTCCATT 59.736 38.462 0.00 0.00 0.00 3.16
5323 5703 7.426929 AGCTATCGCTATAAAAATTGACAGG 57.573 36.000 0.00 0.00 46.79 4.00
5775 6156 9.107367 GTAGTCTTGAAATTCAAATTCTTGACG 57.893 33.333 9.85 0.00 41.34 4.35
5987 6368 2.857592 CGAAGCCAAATCCCATTGAG 57.142 50.000 0.00 0.00 31.84 3.02
6108 6489 6.128035 TGAGCACATTATGATGTAAACCACAC 60.128 38.462 2.35 0.00 44.55 3.82
6110 6491 6.435430 TGAGCACATTATGATGTAAACCAC 57.565 37.500 2.35 0.00 44.55 4.16
6111 6492 8.922931 ATATGAGCACATTATGATGTAAACCA 57.077 30.769 0.83 0.63 44.55 3.67
6278 6663 0.872881 ACGCTACGTTTCGCACAAGT 60.873 50.000 0.00 0.00 36.35 3.16
6290 6675 1.525197 TCAGTTGCTTCAAACGCTACG 59.475 47.619 0.00 0.00 38.00 3.51
6411 6796 9.768662 CAATGAAATTAAATCCAAATCCCTAGG 57.231 33.333 0.06 0.06 32.46 3.02
6527 6918 6.910536 AGCAATGGACTCTTTATTAAGTCG 57.089 37.500 0.00 0.00 42.29 4.18
6531 6922 6.603201 CCCAGAAGCAATGGACTCTTTATTAA 59.397 38.462 3.61 0.00 40.51 1.40
6532 6923 6.122277 CCCAGAAGCAATGGACTCTTTATTA 58.878 40.000 3.61 0.00 40.51 0.98
6547 6938 0.770499 TTGTCATCCACCCAGAAGCA 59.230 50.000 0.00 0.00 0.00 3.91
6564 6955 6.302269 AGGTTTCAGGAAGGATATAGCATTG 58.698 40.000 0.00 0.00 0.00 2.82
6575 6966 7.611855 ACATAAACTCATTAGGTTTCAGGAAGG 59.388 37.037 0.00 0.00 35.05 3.46
6631 7022 0.245539 CAAACTTCATGGGCAGCCTG 59.754 55.000 12.43 2.31 0.00 4.85
6755 7146 4.367450 GGATCTTGAATGAGAGAGGTTCG 58.633 47.826 0.00 0.00 0.00 3.95
6777 7168 0.846015 TCATGAAGCATAGGGGGTGG 59.154 55.000 0.00 0.00 0.00 4.61
6803 7194 4.209452 ACAACAAAGTCAATACACTGCG 57.791 40.909 0.00 0.00 0.00 5.18
6809 7200 9.134734 TGAAAGTGAAAACAACAAAGTCAATAC 57.865 29.630 0.00 0.00 0.00 1.89
7055 7446 4.172505 GCCTTAGATGAGTGATGCTATCG 58.827 47.826 0.00 0.00 0.00 2.92
7094 7485 3.816523 TGGACAACCCGAAAATACAAGAC 59.183 43.478 0.00 0.00 37.93 3.01
7136 7528 1.675483 CCAGCACTAAACACAGCACAA 59.325 47.619 0.00 0.00 0.00 3.33
7137 7529 1.134250 TCCAGCACTAAACACAGCACA 60.134 47.619 0.00 0.00 0.00 4.57
7149 7541 6.299141 TCTGTATTTTCTTTTCTCCAGCACT 58.701 36.000 0.00 0.00 0.00 4.40
7151 7544 7.285401 AGTTTCTGTATTTTCTTTTCTCCAGCA 59.715 33.333 0.00 0.00 0.00 4.41
7165 7558 7.981225 AGTTTGCACATTCAAGTTTCTGTATTT 59.019 29.630 0.00 0.00 0.00 1.40
7169 7562 5.329035 AGTTTGCACATTCAAGTTTCTGT 57.671 34.783 0.00 0.00 0.00 3.41
7173 7566 8.247562 TGTAGTTTAGTTTGCACATTCAAGTTT 58.752 29.630 0.00 0.00 0.00 2.66
7178 7571 6.598525 CGATGTAGTTTAGTTTGCACATTCA 58.401 36.000 0.00 0.00 0.00 2.57
7180 7573 5.390613 GCGATGTAGTTTAGTTTGCACATT 58.609 37.500 0.00 0.00 0.00 2.71
7186 7579 2.222953 GGGCGCGATGTAGTTTAGTTTG 60.223 50.000 12.10 0.00 0.00 2.93
7190 7583 1.647346 TTGGGCGCGATGTAGTTTAG 58.353 50.000 12.10 0.00 0.00 1.85
7192 7585 1.240256 TTTTGGGCGCGATGTAGTTT 58.760 45.000 12.10 0.00 0.00 2.66
7195 7588 1.533756 CCATTTTTGGGCGCGATGTAG 60.534 52.381 12.10 0.00 0.00 2.74
7200 7595 1.178276 AATACCATTTTTGGGCGCGA 58.822 45.000 12.10 0.00 0.00 5.87
7201 7596 2.003196 AAATACCATTTTTGGGCGCG 57.997 45.000 0.00 0.00 0.00 6.86
7222 7617 8.433421 TCGAACTGAGTAATTTTGACTTCTTT 57.567 30.769 0.00 0.00 0.00 2.52
7236 7631 6.586463 GTCATCAATTTGTCTCGAACTGAGTA 59.414 38.462 0.00 0.00 45.46 2.59
7238 7633 5.406477 TGTCATCAATTTGTCTCGAACTGAG 59.594 40.000 0.00 0.00 46.72 3.35
7239 7634 5.296748 TGTCATCAATTTGTCTCGAACTGA 58.703 37.500 0.00 0.00 0.00 3.41
7263 7661 6.731292 ACTACTTGGCCTTTTCTGATTTTT 57.269 33.333 3.32 0.00 0.00 1.94
7276 7674 0.036875 ACAGGCAGAACTACTTGGCC 59.963 55.000 0.00 0.00 44.92 5.36
7280 7679 5.471456 CAGATTTGAACAGGCAGAACTACTT 59.529 40.000 0.00 0.00 0.00 2.24
7285 7684 5.412594 TCATACAGATTTGAACAGGCAGAAC 59.587 40.000 0.00 0.00 0.00 3.01
7287 7686 4.937620 GTCATACAGATTTGAACAGGCAGA 59.062 41.667 0.00 0.00 0.00 4.26
7288 7687 4.201753 CGTCATACAGATTTGAACAGGCAG 60.202 45.833 0.00 0.00 0.00 4.85
7289 7688 3.684305 CGTCATACAGATTTGAACAGGCA 59.316 43.478 0.00 0.00 0.00 4.75
7290 7689 3.932710 TCGTCATACAGATTTGAACAGGC 59.067 43.478 0.00 0.00 0.00 4.85
7291 7690 4.330074 GGTCGTCATACAGATTTGAACAGG 59.670 45.833 0.00 0.00 0.00 4.00
7292 7691 4.929211 TGGTCGTCATACAGATTTGAACAG 59.071 41.667 0.00 0.00 0.00 3.16
7293 7692 4.888917 TGGTCGTCATACAGATTTGAACA 58.111 39.130 0.00 0.00 0.00 3.18
7294 7693 4.201724 GCTGGTCGTCATACAGATTTGAAC 60.202 45.833 0.00 0.00 34.21 3.18
7296 7695 3.195610 AGCTGGTCGTCATACAGATTTGA 59.804 43.478 0.00 0.00 34.21 2.69
7308 7717 2.432628 CCGGACAAGCTGGTCGTC 60.433 66.667 15.17 6.26 38.70 4.20
7318 7727 1.227823 CCAGTGCAGAACCGGACAA 60.228 57.895 9.46 0.00 0.00 3.18
7319 7728 2.137528 TCCAGTGCAGAACCGGACA 61.138 57.895 9.46 0.00 29.83 4.02
7320 7729 1.668151 GTCCAGTGCAGAACCGGAC 60.668 63.158 9.46 0.00 46.57 4.79
7322 7731 1.003355 ATGTCCAGTGCAGAACCGG 60.003 57.895 0.00 0.00 0.00 5.28
7323 7732 0.036952 AGATGTCCAGTGCAGAACCG 60.037 55.000 0.00 0.00 0.00 4.44
7324 7733 2.191128 AAGATGTCCAGTGCAGAACC 57.809 50.000 0.00 0.00 0.00 3.62
7325 7734 5.181748 AGATAAAGATGTCCAGTGCAGAAC 58.818 41.667 0.00 0.00 0.00 3.01
7328 7737 4.763073 TGAGATAAAGATGTCCAGTGCAG 58.237 43.478 0.00 0.00 0.00 4.41
7330 7739 6.690194 ATTTGAGATAAAGATGTCCAGTGC 57.310 37.500 0.00 0.00 0.00 4.40
7362 7910 3.284617 CAGTGATGAATCTGCCCATTGA 58.715 45.455 0.00 0.00 0.00 2.57
7379 7927 6.519382 TGAGATGTGAAATAGGATAGCAGTG 58.481 40.000 0.00 0.00 0.00 3.66
7403 7951 7.669427 TGCCAGATAGATTTTGAAACACATTT 58.331 30.769 0.00 0.00 0.00 2.32
7404 7952 7.230849 TGCCAGATAGATTTTGAAACACATT 57.769 32.000 0.00 0.00 0.00 2.71
7405 7953 6.626623 GCTGCCAGATAGATTTTGAAACACAT 60.627 38.462 0.00 0.00 0.00 3.21
7407 7955 5.098211 GCTGCCAGATAGATTTTGAAACAC 58.902 41.667 0.00 0.00 0.00 3.32
7411 7966 5.104610 AGAGAGCTGCCAGATAGATTTTGAA 60.105 40.000 0.00 0.00 0.00 2.69
7414 7969 4.655186 AGAGAGAGCTGCCAGATAGATTTT 59.345 41.667 0.00 0.00 0.00 1.82
7429 7984 4.513318 ACTTTGTGCTTTTGTAGAGAGAGC 59.487 41.667 0.00 0.00 0.00 4.09
7430 7985 7.715265 TTACTTTGTGCTTTTGTAGAGAGAG 57.285 36.000 0.00 0.00 0.00 3.20
7431 7986 7.985184 TCTTTACTTTGTGCTTTTGTAGAGAGA 59.015 33.333 0.00 0.00 0.00 3.10
7432 7987 8.142994 TCTTTACTTTGTGCTTTTGTAGAGAG 57.857 34.615 0.00 0.00 0.00 3.20
7447 8005 6.364435 GGAGCTCTTGCATTTTCTTTACTTTG 59.636 38.462 14.64 0.00 42.74 2.77
7448 8006 6.266330 AGGAGCTCTTGCATTTTCTTTACTTT 59.734 34.615 14.64 0.00 42.74 2.66
7454 8012 2.230750 GCAGGAGCTCTTGCATTTTCTT 59.769 45.455 37.42 0.00 46.60 2.52
7536 8096 9.519191 TGAGATTTCAAGATAGATTTTCCACAA 57.481 29.630 0.00 0.00 0.00 3.33
7538 8098 9.388506 TCTGAGATTTCAAGATAGATTTTCCAC 57.611 33.333 0.00 0.00 31.69 4.02
7541 8101 9.328845 AGCTCTGAGATTTCAAGATAGATTTTC 57.671 33.333 9.28 0.00 31.69 2.29
7542 8102 9.111613 CAGCTCTGAGATTTCAAGATAGATTTT 57.888 33.333 9.28 0.00 31.69 1.82
7589 8151 3.433274 TGCTTGCTTGACTTACTTGATCG 59.567 43.478 0.00 0.00 0.00 3.69
7590 8152 4.453819 ACTGCTTGCTTGACTTACTTGATC 59.546 41.667 0.00 0.00 0.00 2.92
7596 8161 3.926616 TCCTACTGCTTGCTTGACTTAC 58.073 45.455 0.00 0.00 0.00 2.34
7600 8165 5.586243 TGATTATTCCTACTGCTTGCTTGAC 59.414 40.000 0.00 0.00 0.00 3.18
7609 8174 4.576463 CCAGGTGTTGATTATTCCTACTGC 59.424 45.833 0.00 0.00 0.00 4.40
7613 8178 5.724370 TGACTCCAGGTGTTGATTATTCCTA 59.276 40.000 0.00 0.00 0.00 2.94
7615 8180 4.636206 GTGACTCCAGGTGTTGATTATTCC 59.364 45.833 0.00 0.00 0.00 3.01
7616 8181 4.636206 GGTGACTCCAGGTGTTGATTATTC 59.364 45.833 0.00 0.00 35.97 1.75
7632 8197 0.329596 AATCCCTTGGCTGGTGACTC 59.670 55.000 0.00 0.00 0.00 3.36
7634 8199 2.507407 TAAATCCCTTGGCTGGTGAC 57.493 50.000 0.00 0.00 0.00 3.67
7641 8208 4.953940 TTGGCATAATAAATCCCTTGGC 57.046 40.909 0.00 0.00 0.00 4.52
7643 8210 6.648192 TGGTTTTGGCATAATAAATCCCTTG 58.352 36.000 0.00 0.00 0.00 3.61
7647 8214 6.872920 TGACTGGTTTTGGCATAATAAATCC 58.127 36.000 0.00 0.00 0.00 3.01
7655 8222 1.824230 GGCATGACTGGTTTTGGCATA 59.176 47.619 0.00 0.00 35.00 3.14
7669 8245 5.925506 AATGAGTGAATTGAATGGCATGA 57.074 34.783 0.00 0.00 0.00 3.07
7670 8246 5.981315 GGTAATGAGTGAATTGAATGGCATG 59.019 40.000 0.00 0.00 0.00 4.06
7676 8252 5.513233 AGCCAGGTAATGAGTGAATTGAAT 58.487 37.500 0.00 0.00 0.00 2.57
7677 8253 4.922206 AGCCAGGTAATGAGTGAATTGAA 58.078 39.130 0.00 0.00 0.00 2.69
7678 8254 4.574674 AGCCAGGTAATGAGTGAATTGA 57.425 40.909 0.00 0.00 0.00 2.57
7679 8255 4.271049 CGTAGCCAGGTAATGAGTGAATTG 59.729 45.833 0.00 0.00 0.00 2.32
7680 8256 4.442706 CGTAGCCAGGTAATGAGTGAATT 58.557 43.478 0.00 0.00 0.00 2.17
7686 8262 0.249911 GCCCGTAGCCAGGTAATGAG 60.250 60.000 0.00 0.00 34.35 2.90
7700 8276 1.338136 AAGCAGCATAGGTAGCCCGT 61.338 55.000 0.00 0.00 35.12 5.28
7701 8277 0.601311 GAAGCAGCATAGGTAGCCCG 60.601 60.000 0.00 0.00 35.12 6.13
7702 8278 0.250510 GGAAGCAGCATAGGTAGCCC 60.251 60.000 0.00 0.00 0.00 5.19
7703 8279 0.469917 TGGAAGCAGCATAGGTAGCC 59.530 55.000 0.00 0.00 0.00 3.93
7704 8280 1.587547 GTGGAAGCAGCATAGGTAGC 58.412 55.000 0.00 0.00 0.00 3.58
7705 8281 1.539065 CCGTGGAAGCAGCATAGGTAG 60.539 57.143 0.00 0.00 0.00 3.18
7706 8282 0.464036 CCGTGGAAGCAGCATAGGTA 59.536 55.000 0.00 0.00 0.00 3.08
7768 8344 1.528824 CAGTACATGCCCCTGGAGG 59.471 63.158 0.00 0.00 0.00 4.30
7844 8420 4.097135 TGAATCTTTGTTGCTGACGGAAAA 59.903 37.500 0.00 0.00 0.00 2.29
7848 8424 2.549754 ACTGAATCTTTGTTGCTGACGG 59.450 45.455 0.00 0.00 0.00 4.79
7849 8425 3.248363 TCACTGAATCTTTGTTGCTGACG 59.752 43.478 0.00 0.00 0.00 4.35
7850 8426 4.818534 TCACTGAATCTTTGTTGCTGAC 57.181 40.909 0.00 0.00 0.00 3.51
7851 8427 5.765176 CAATCACTGAATCTTTGTTGCTGA 58.235 37.500 0.00 0.00 0.00 4.26
7852 8428 4.384846 GCAATCACTGAATCTTTGTTGCTG 59.615 41.667 0.00 0.00 38.08 4.41
7853 8429 4.280174 AGCAATCACTGAATCTTTGTTGCT 59.720 37.500 7.63 7.63 44.19 3.91
7854 8430 4.553323 AGCAATCACTGAATCTTTGTTGC 58.447 39.130 0.00 0.00 40.55 4.17
7858 8436 4.806330 AGCAAGCAATCACTGAATCTTTG 58.194 39.130 0.00 0.00 0.00 2.77
7865 8443 1.612676 AGCAAGCAAGCAATCACTGA 58.387 45.000 3.19 0.00 36.85 3.41
7871 8449 3.691118 TCGAAATCTAGCAAGCAAGCAAT 59.309 39.130 3.19 0.00 36.85 3.56
7876 8454 2.923655 CGTCTCGAAATCTAGCAAGCAA 59.076 45.455 0.00 0.00 0.00 3.91
7878 8456 1.855360 CCGTCTCGAAATCTAGCAAGC 59.145 52.381 0.00 0.00 0.00 4.01
7879 8457 3.367607 CTCCGTCTCGAAATCTAGCAAG 58.632 50.000 0.00 0.00 0.00 4.01
7910 8497 2.388310 GGTAAGGACCAGAGTTCAGC 57.612 55.000 0.00 0.00 46.12 4.26
8000 8593 4.802051 CGATGGGGTGGCTGGTGG 62.802 72.222 0.00 0.00 0.00 4.61
8190 8783 1.482593 GTGGGTGGTAGGAGACTGATG 59.517 57.143 0.00 0.00 43.88 3.07
8216 8809 2.328099 GCAGTTTCTCCGTGGCCTG 61.328 63.158 3.32 0.00 0.00 4.85
8224 8824 1.882623 CCTTCCACTTGCAGTTTCTCC 59.117 52.381 0.00 0.00 0.00 3.71
8229 8829 1.215423 ACCTTCCTTCCACTTGCAGTT 59.785 47.619 0.00 0.00 0.00 3.16
8237 8837 0.670854 GTCGCTCACCTTCCTTCCAC 60.671 60.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.