Multiple sequence alignment - TraesCS2D01G423500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G423500 chr2D 100.000 5751 0 0 1 5751 536907960 536902210 0.000000e+00 10621.0
1 TraesCS2D01G423500 chr2D 77.171 1739 335 49 3052 4753 536534636 536532923 0.000000e+00 955.0
2 TraesCS2D01G423500 chr2D 87.833 600 47 8 2 575 543823819 543824418 0.000000e+00 680.0
3 TraesCS2D01G423500 chr2D 88.191 398 39 7 2566 2958 574394114 574394508 8.730000e-128 468.0
4 TraesCS2D01G423500 chr2D 87.179 234 30 0 341 574 567635001 567635234 3.420000e-67 267.0
5 TraesCS2D01G423500 chr2D 84.932 73 11 0 226 298 547199530 547199602 2.220000e-09 75.0
6 TraesCS2D01G423500 chr2A 91.449 1567 100 12 4191 5745 679462278 679460734 0.000000e+00 2121.0
7 TraesCS2D01G423500 chr2A 96.141 1218 40 5 1349 2565 679464898 679463687 0.000000e+00 1982.0
8 TraesCS2D01G423500 chr2A 94.521 1241 64 3 2957 4197 679463695 679462459 0.000000e+00 1912.0
9 TraesCS2D01G423500 chr2A 76.481 1688 341 44 3052 4704 679278162 679276496 0.000000e+00 867.0
10 TraesCS2D01G423500 chr2A 92.398 342 20 3 573 913 679466222 679465886 3.120000e-132 483.0
11 TraesCS2D01G423500 chr2A 85.856 403 50 7 2558 2957 17529750 17529352 6.890000e-114 422.0
12 TraesCS2D01G423500 chr2A 90.058 171 12 3 1133 1300 679465235 679465067 3.490000e-52 217.0
13 TraesCS2D01G423500 chr2A 79.630 108 20 2 2329 2435 733685000 733684894 6.180000e-10 76.8
14 TraesCS2D01G423500 chr2B 89.766 1368 95 15 4377 5716 638955628 638954278 0.000000e+00 1709.0
15 TraesCS2D01G423500 chr2B 91.016 935 80 4 3400 4332 638956556 638955624 0.000000e+00 1258.0
16 TraesCS2D01G423500 chr2B 91.199 534 38 6 2037 2565 638957654 638957125 0.000000e+00 717.0
17 TraesCS2D01G423500 chr2B 91.068 459 32 7 2957 3408 638957133 638956677 3.810000e-171 612.0
18 TraesCS2D01G423500 chr2B 91.832 404 19 5 573 966 638959395 638958996 8.420000e-153 551.0
19 TraesCS2D01G423500 chr2B 88.969 417 35 4 1591 2005 638958126 638957719 6.650000e-139 505.0
20 TraesCS2D01G423500 chr2B 86.717 399 45 7 2562 2958 681506510 681506118 2.460000e-118 436.0
21 TraesCS2D01G423500 chr2B 90.323 279 19 3 962 1235 638958962 638958687 5.480000e-95 359.0
22 TraesCS2D01G423500 chr6B 89.567 393 38 3 2566 2956 21125694 21126085 4.000000e-136 496.0
23 TraesCS2D01G423500 chr6B 85.887 248 32 3 340 585 172330504 172330258 1.590000e-65 261.0
24 TraesCS2D01G423500 chrUn 88.114 387 40 6 2572 2956 31787885 31787503 6.790000e-124 455.0
25 TraesCS2D01G423500 chr7B 87.532 393 47 2 2566 2957 720307641 720308032 2.440000e-123 453.0
26 TraesCS2D01G423500 chr7B 86.667 75 10 0 226 300 539197569 539197643 3.690000e-12 84.2
27 TraesCS2D01G423500 chr3D 88.981 363 39 1 2566 2928 27678887 27679248 1.140000e-121 448.0
28 TraesCS2D01G423500 chr5D 86.420 405 49 6 2566 2966 498313563 498313965 6.840000e-119 438.0
29 TraesCS2D01G423500 chr5D 85.333 75 11 0 226 300 550561437 550561363 1.720000e-10 78.7
30 TraesCS2D01G423500 chr7A 86.041 394 50 5 2566 2957 29481792 29481402 8.910000e-113 418.0
31 TraesCS2D01G423500 chr7A 92.424 66 5 0 5501 5566 454039698 454039633 1.710000e-15 95.3
32 TraesCS2D01G423500 chr5A 88.136 236 27 1 340 574 41873722 41873487 4.390000e-71 279.0
33 TraesCS2D01G423500 chr5A 85.333 75 11 0 226 300 493402396 493402470 1.720000e-10 78.7
34 TraesCS2D01G423500 chr1D 87.712 236 28 1 340 574 477236679 477236444 2.040000e-69 274.0
35 TraesCS2D01G423500 chr3A 88.235 221 22 3 338 554 738717474 738717254 1.590000e-65 261.0
36 TraesCS2D01G423500 chr3A 87.204 211 25 2 366 575 79392867 79393076 7.450000e-59 239.0
37 TraesCS2D01G423500 chr1A 86.207 232 25 6 346 575 99728415 99728189 1.600000e-60 244.0
38 TraesCS2D01G423500 chr1A 85.022 227 24 5 340 563 243616943 243617162 7.500000e-54 222.0
39 TraesCS2D01G423500 chr7D 82.653 98 13 3 228 325 61757101 61757008 3.690000e-12 84.2
40 TraesCS2D01G423500 chr4B 88.235 68 8 0 233 300 483589559 483589492 1.330000e-11 82.4
41 TraesCS2D01G423500 chr4D 100.000 28 0 0 1353 1380 121073526 121073499 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G423500 chr2D 536902210 536907960 5750 True 10621.000000 10621 100.000000 1 5751 1 chr2D.!!$R2 5750
1 TraesCS2D01G423500 chr2D 536532923 536534636 1713 True 955.000000 955 77.171000 3052 4753 1 chr2D.!!$R1 1701
2 TraesCS2D01G423500 chr2D 543823819 543824418 599 False 680.000000 680 87.833000 2 575 1 chr2D.!!$F1 573
3 TraesCS2D01G423500 chr2A 679460734 679466222 5488 True 1343.000000 2121 92.913400 573 5745 5 chr2A.!!$R4 5172
4 TraesCS2D01G423500 chr2A 679276496 679278162 1666 True 867.000000 867 76.481000 3052 4704 1 chr2A.!!$R2 1652
5 TraesCS2D01G423500 chr2B 638954278 638959395 5117 True 815.857143 1709 90.596143 573 5716 7 chr2B.!!$R2 5143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 323 0.248296 CGCCGAACTACTCTGAGCTC 60.248 60.0 6.82 6.82 0.00 4.09 F
1012 1540 0.031178 GGCGGCAATGATGGTGAATC 59.969 55.0 3.07 0.00 35.67 2.52 F
1040 1568 0.037790 GGCAGTTCTTCTCTGACGCT 60.038 55.0 0.00 0.00 35.20 5.07 F
2926 4001 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.0 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1908 1.139058 CATAAAGGAGGGACGAGGTGG 59.861 57.143 0.0 0.0 0.00 4.61 R
2907 3982 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.000 0.0 0.0 43.62 2.71 R
2934 4009 0.110486 GAAAGGAGTGGCTGAACCCA 59.890 55.000 0.0 0.0 37.83 4.51 R
4780 6203 0.804364 GCATCTTCACCAATGACGCA 59.196 50.000 0.0 0.0 33.38 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 192 4.609018 ACGCCGAGCAGCTGTGTT 62.609 61.111 16.64 0.97 0.00 3.32
157 193 4.081030 CGCCGAGCAGCTGTGTTG 62.081 66.667 16.64 7.01 0.00 3.33
158 194 4.395583 GCCGAGCAGCTGTGTTGC 62.396 66.667 16.64 9.94 40.00 4.17
159 195 4.081030 CCGAGCAGCTGTGTTGCG 62.081 66.667 16.64 11.50 44.23 4.85
160 196 4.081030 CGAGCAGCTGTGTTGCGG 62.081 66.667 16.64 0.00 44.23 5.69
161 197 3.730761 GAGCAGCTGTGTTGCGGG 61.731 66.667 16.64 0.00 44.23 6.13
164 200 3.367743 CAGCTGTGTTGCGGGCAT 61.368 61.111 5.25 0.00 38.13 4.40
165 201 3.367743 AGCTGTGTTGCGGGCATG 61.368 61.111 0.00 0.00 38.13 4.06
167 203 3.367743 CTGTGTTGCGGGCATGCT 61.368 61.111 18.92 0.00 35.36 3.79
168 204 3.620300 CTGTGTTGCGGGCATGCTG 62.620 63.158 18.92 11.81 35.36 4.41
169 205 3.364441 GTGTTGCGGGCATGCTGA 61.364 61.111 18.92 0.00 35.36 4.26
170 206 3.057548 TGTTGCGGGCATGCTGAG 61.058 61.111 18.92 10.25 35.36 3.35
171 207 4.487412 GTTGCGGGCATGCTGAGC 62.487 66.667 18.92 19.59 35.36 4.26
178 214 3.873883 GCATGCTGAGCACGAGGC 61.874 66.667 10.33 7.92 43.04 4.70
179 215 3.200593 CATGCTGAGCACGAGGCC 61.201 66.667 10.33 0.00 46.50 5.19
272 323 0.248296 CGCCGAACTACTCTGAGCTC 60.248 60.000 6.82 6.82 0.00 4.09
376 427 7.610580 TTTTTGTTTTTAGATCCAGGGATGT 57.389 32.000 5.35 4.21 34.60 3.06
378 429 4.016444 TGTTTTTAGATCCAGGGATGTGC 58.984 43.478 5.35 0.00 34.60 4.57
385 436 3.202818 AGATCCAGGGATGTGCATGTAAA 59.797 43.478 5.35 0.00 34.60 2.01
386 437 3.003394 TCCAGGGATGTGCATGTAAAG 57.997 47.619 0.00 0.00 0.00 1.85
398 449 4.808364 GTGCATGTAAAGTTTTTGCCAAGA 59.192 37.500 12.52 0.00 32.39 3.02
409 460 3.439857 TTTGCCAAGACAGCTCCTTAT 57.560 42.857 0.00 0.00 0.00 1.73
460 511 3.825328 ACATGGGCTAAATCACCTGATC 58.175 45.455 0.00 0.00 32.75 2.92
465 516 2.615912 GGCTAAATCACCTGATCAGTGC 59.384 50.000 21.11 10.98 32.75 4.40
472 523 2.229543 TCACCTGATCAGTGCAATTTGC 59.770 45.455 21.11 14.49 45.29 3.68
493 544 5.881447 TGCAAAAAGTTTACTAGAAACGCA 58.119 33.333 0.00 5.26 35.42 5.24
494 545 6.323266 TGCAAAAAGTTTACTAGAAACGCAA 58.677 32.000 0.00 0.00 35.42 4.85
503 554 9.180678 AGTTTACTAGAAACGCAATGATTTTTG 57.819 29.630 0.00 0.00 35.42 2.44
541 592 3.482436 AGGTGGTTTTCTGCAAACGATA 58.518 40.909 0.00 0.00 45.25 2.92
545 596 2.817844 GGTTTTCTGCAAACGATACCCT 59.182 45.455 0.00 0.00 45.25 4.34
557 608 3.109151 ACGATACCCTAAATGTGGTGGA 58.891 45.455 0.00 0.00 36.04 4.02
563 614 7.283580 CGATACCCTAAATGTGGTGGATTTTTA 59.716 37.037 0.00 0.00 36.04 1.52
565 616 5.184287 ACCCTAAATGTGGTGGATTTTTACG 59.816 40.000 0.00 0.00 32.36 3.18
655 706 4.621991 CCTATGTGGAAGAGGTATGTTCG 58.378 47.826 0.00 0.00 38.35 3.95
825 882 0.674534 ACTCACCTCGTCCACAAGAC 59.325 55.000 0.00 0.00 42.54 3.01
857 914 1.277557 ACAGAGGGACAATGCAGACTC 59.722 52.381 0.00 0.00 0.00 3.36
858 915 1.277273 CAGAGGGACAATGCAGACTCA 59.723 52.381 0.00 0.00 0.00 3.41
859 916 1.277557 AGAGGGACAATGCAGACTCAC 59.722 52.381 0.00 0.00 0.00 3.51
861 918 0.326264 GGGACAATGCAGACTCACCT 59.674 55.000 0.00 0.00 0.00 4.00
862 919 1.677217 GGGACAATGCAGACTCACCTC 60.677 57.143 0.00 0.00 0.00 3.85
863 920 1.354040 GACAATGCAGACTCACCTCG 58.646 55.000 0.00 0.00 0.00 4.63
881 942 9.504710 CTCACCTCGTATAGAATAAAATATCCG 57.495 37.037 0.00 0.00 0.00 4.18
882 943 8.464404 TCACCTCGTATAGAATAAAATATCCGG 58.536 37.037 0.00 0.00 0.00 5.14
883 944 7.222224 CACCTCGTATAGAATAAAATATCCGGC 59.778 40.741 0.00 0.00 0.00 6.13
884 945 6.700520 CCTCGTATAGAATAAAATATCCGGCC 59.299 42.308 0.00 0.00 0.00 6.13
890 951 2.039818 TAAAATATCCGGCCGCAACA 57.960 45.000 22.85 4.27 0.00 3.33
905 966 2.093973 CGCAACACAGATAGGAAGGTCT 60.094 50.000 0.00 0.00 0.00 3.85
913 974 0.683504 ATAGGAAGGTCTGGCGACGT 60.684 55.000 0.00 0.00 41.16 4.34
939 1419 8.749026 TCTATATAAACTGAACTCCGAGTCTT 57.251 34.615 0.35 0.00 0.00 3.01
980 1508 3.368236 GGTTAGTTCTTCTGCACATCGAC 59.632 47.826 0.00 0.00 0.00 4.20
1008 1536 4.557605 GCGGCGGCAATGATGGTG 62.558 66.667 9.78 0.00 39.62 4.17
1009 1537 2.823593 CGGCGGCAATGATGGTGA 60.824 61.111 10.53 0.00 0.00 4.02
1010 1538 2.405805 CGGCGGCAATGATGGTGAA 61.406 57.895 10.53 0.00 0.00 3.18
1011 1539 1.727511 CGGCGGCAATGATGGTGAAT 61.728 55.000 10.53 0.00 0.00 2.57
1012 1540 0.031178 GGCGGCAATGATGGTGAATC 59.969 55.000 3.07 0.00 35.67 2.52
1013 1541 0.031178 GCGGCAATGATGGTGAATCC 59.969 55.000 0.00 0.00 34.00 3.01
1014 1542 0.308684 CGGCAATGATGGTGAATCCG 59.691 55.000 0.00 0.00 39.52 4.18
1035 1563 1.743252 GCCGGGCAGTTCTTCTCTG 60.743 63.158 15.62 0.00 36.18 3.35
1040 1568 0.037790 GGCAGTTCTTCTCTGACGCT 60.038 55.000 0.00 0.00 35.20 5.07
1186 1725 2.211806 TGCAAAGCAAAATCTTGTGCC 58.788 42.857 1.45 0.00 41.88 5.01
1200 1739 4.181578 TCTTGTGCCTAGCTTTTATCGTC 58.818 43.478 0.00 0.00 0.00 4.20
1217 1756 7.751047 TTATCGTCGGAGAGAAACAAATTAG 57.249 36.000 0.00 0.00 36.95 1.73
1222 1761 6.363473 GTCGGAGAGAAACAAATTAGTTGTG 58.637 40.000 0.00 0.00 44.50 3.33
1237 1776 2.752354 AGTTGTGCCGCATTGCTAATTA 59.248 40.909 7.12 0.00 0.00 1.40
1238 1777 3.381272 AGTTGTGCCGCATTGCTAATTAT 59.619 39.130 7.12 0.00 0.00 1.28
1250 1789 9.509855 CGCATTGCTAATTATAACTAACCAAAA 57.490 29.630 7.12 0.00 0.00 2.44
1263 1802 7.683437 AACTAACCAAAAATGCTAGACCTAC 57.317 36.000 0.00 0.00 0.00 3.18
1264 1803 6.178324 ACTAACCAAAAATGCTAGACCTACC 58.822 40.000 0.00 0.00 0.00 3.18
1303 1884 2.509166 ACGAAAATCCCTCTTTCCCC 57.491 50.000 0.00 0.00 30.45 4.81
1314 1895 3.980698 CCCTCTTTCCCCCACTAATATCA 59.019 47.826 0.00 0.00 0.00 2.15
1325 1906 8.065007 TCCCCCACTAATATCAAATTAAAAGCT 58.935 33.333 0.00 0.00 0.00 3.74
1327 1908 7.653311 CCCCACTAATATCAAATTAAAAGCTGC 59.347 37.037 0.00 0.00 0.00 5.25
1334 1915 3.057596 TCAAATTAAAAGCTGCCACCTCG 60.058 43.478 0.00 0.00 0.00 4.63
1340 1921 4.459089 GCTGCCACCTCGTCCCTC 62.459 72.222 0.00 0.00 0.00 4.30
1341 1922 3.775654 CTGCCACCTCGTCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
1342 1923 4.316823 TGCCACCTCGTCCCTCCT 62.317 66.667 0.00 0.00 0.00 3.69
1344 1925 2.593956 GCCACCTCGTCCCTCCTTT 61.594 63.158 0.00 0.00 0.00 3.11
1345 1926 1.262640 GCCACCTCGTCCCTCCTTTA 61.263 60.000 0.00 0.00 0.00 1.85
1347 1928 1.139058 CCACCTCGTCCCTCCTTTATG 59.861 57.143 0.00 0.00 0.00 1.90
1350 1931 2.317040 CCTCGTCCCTCCTTTATGCTA 58.683 52.381 0.00 0.00 0.00 3.49
1351 1932 2.900546 CCTCGTCCCTCCTTTATGCTAT 59.099 50.000 0.00 0.00 0.00 2.97
1352 1933 3.306364 CCTCGTCCCTCCTTTATGCTATG 60.306 52.174 0.00 0.00 0.00 2.23
1354 1935 4.476297 TCGTCCCTCCTTTATGCTATGTA 58.524 43.478 0.00 0.00 0.00 2.29
1355 1936 4.897076 TCGTCCCTCCTTTATGCTATGTAA 59.103 41.667 0.00 0.00 0.00 2.41
1357 1938 5.010719 CGTCCCTCCTTTATGCTATGTAAGA 59.989 44.000 0.00 0.00 0.00 2.10
1359 1940 5.307196 TCCCTCCTTTATGCTATGTAAGACC 59.693 44.000 0.00 0.00 0.00 3.85
1360 1941 5.071788 CCCTCCTTTATGCTATGTAAGACCA 59.928 44.000 0.00 0.00 0.00 4.02
1365 2027 9.555727 TCCTTTATGCTATGTAAGACCAATTAC 57.444 33.333 0.00 0.00 36.40 1.89
1381 2043 5.179929 ACCAATTACGTAGGTGTAGCAAAAC 59.820 40.000 4.31 0.00 33.57 2.43
1385 2047 4.332428 ACGTAGGTGTAGCAAAACTCTT 57.668 40.909 0.00 0.00 0.00 2.85
1419 2081 2.875933 GTCTTCAATCGGTTTGGTGACA 59.124 45.455 14.25 0.00 37.62 3.58
1420 2082 3.502211 GTCTTCAATCGGTTTGGTGACAT 59.498 43.478 14.25 0.00 42.32 3.06
1514 2176 1.202879 TGGCGACTCTGGTTCCATTTT 60.203 47.619 0.00 0.00 0.00 1.82
1554 2216 5.073144 TGAAAACAAGTACTCCCTCCAATCT 59.927 40.000 0.00 0.00 0.00 2.40
1662 2693 4.523083 GAGAAGAAGGCTAGAGAGACTCA 58.477 47.826 5.02 0.00 41.81 3.41
1715 2746 1.282930 GCCGACGTGTCAGGAAAGTC 61.283 60.000 12.80 0.00 0.00 3.01
1816 2847 8.648693 AGTATCCTGGATTTTACATACAGGTAC 58.351 37.037 15.55 10.42 46.71 3.34
1817 2848 6.877668 TCCTGGATTTTACATACAGGTACA 57.122 37.500 9.25 0.00 46.71 2.90
1818 2849 6.646267 TCCTGGATTTTACATACAGGTACAC 58.354 40.000 9.25 0.00 46.71 2.90
1819 2850 5.820947 CCTGGATTTTACATACAGGTACACC 59.179 44.000 1.51 0.00 42.83 4.16
1820 2851 5.421277 TGGATTTTACATACAGGTACACCG 58.579 41.667 0.00 0.00 42.08 4.94
1821 2852 5.046448 TGGATTTTACATACAGGTACACCGT 60.046 40.000 0.00 0.00 42.08 4.83
1822 2853 6.154192 TGGATTTTACATACAGGTACACCGTA 59.846 38.462 0.00 5.85 42.08 4.02
1823 2854 6.476706 GGATTTTACATACAGGTACACCGTAC 59.523 42.308 0.00 0.00 42.08 3.67
1824 2855 5.973899 TTTACATACAGGTACACCGTACA 57.026 39.130 6.62 0.00 42.08 2.90
1840 2873 3.624861 CCGTACACACACTACTAGGTAGG 59.375 52.174 9.14 0.00 40.13 3.18
1841 2874 3.624861 CGTACACACACTACTAGGTAGGG 59.375 52.174 5.53 5.53 44.34 3.53
1852 2888 6.427547 CACTACTAGGTAGGGTTTAGAGATCG 59.572 46.154 9.14 0.00 40.13 3.69
1856 2892 7.349598 ACTAGGTAGGGTTTAGAGATCGTTTA 58.650 38.462 0.00 0.00 0.00 2.01
1931 2968 3.994392 TCTAAGTTGATGTTTGAGCCGTC 59.006 43.478 0.00 0.00 0.00 4.79
2020 3058 7.733402 AGGCGTAAACACTAACATCTTTTTA 57.267 32.000 0.00 0.00 0.00 1.52
2492 3567 2.866454 ACCCCACTCCTAAGAGAGGTAT 59.134 50.000 4.37 0.00 46.38 2.73
2572 3647 8.017418 AGATAGACTTAAAGAATGGAGAGTGG 57.983 38.462 0.00 0.00 0.00 4.00
2573 3648 7.621683 AGATAGACTTAAAGAATGGAGAGTGGT 59.378 37.037 0.00 0.00 0.00 4.16
2574 3649 6.441088 AGACTTAAAGAATGGAGAGTGGTT 57.559 37.500 0.00 0.00 0.00 3.67
2575 3650 6.842676 AGACTTAAAGAATGGAGAGTGGTTT 58.157 36.000 0.00 0.00 0.00 3.27
2576 3651 7.290813 AGACTTAAAGAATGGAGAGTGGTTTT 58.709 34.615 0.00 0.00 0.00 2.43
2577 3652 7.780271 AGACTTAAAGAATGGAGAGTGGTTTTT 59.220 33.333 0.00 0.00 0.00 1.94
2578 3653 7.941919 ACTTAAAGAATGGAGAGTGGTTTTTC 58.058 34.615 0.00 0.00 0.00 2.29
2579 3654 7.780271 ACTTAAAGAATGGAGAGTGGTTTTTCT 59.220 33.333 0.00 0.00 0.00 2.52
2580 3655 9.284968 CTTAAAGAATGGAGAGTGGTTTTTCTA 57.715 33.333 0.00 0.00 0.00 2.10
2581 3656 7.511959 AAAGAATGGAGAGTGGTTTTTCTAC 57.488 36.000 0.00 0.00 0.00 2.59
2582 3657 6.187727 AGAATGGAGAGTGGTTTTTCTACA 57.812 37.500 0.00 0.00 38.57 2.74
2583 3658 5.998363 AGAATGGAGAGTGGTTTTTCTACAC 59.002 40.000 0.00 0.00 37.11 2.90
2584 3659 4.081322 TGGAGAGTGGTTTTTCTACACC 57.919 45.455 0.00 0.00 35.79 4.16
2585 3660 3.181448 TGGAGAGTGGTTTTTCTACACCC 60.181 47.826 0.00 0.00 35.79 4.61
2586 3661 3.409570 GAGAGTGGTTTTTCTACACCCC 58.590 50.000 0.00 0.00 35.79 4.95
2587 3662 2.781174 AGAGTGGTTTTTCTACACCCCA 59.219 45.455 0.00 0.00 35.79 4.96
2588 3663 3.146847 GAGTGGTTTTTCTACACCCCAG 58.853 50.000 0.00 0.00 35.79 4.45
2589 3664 1.611977 GTGGTTTTTCTACACCCCAGC 59.388 52.381 0.00 0.00 31.24 4.85
2590 3665 1.497286 TGGTTTTTCTACACCCCAGCT 59.503 47.619 0.00 0.00 31.24 4.24
2591 3666 2.160205 GGTTTTTCTACACCCCAGCTC 58.840 52.381 0.00 0.00 0.00 4.09
2592 3667 1.804748 GTTTTTCTACACCCCAGCTCG 59.195 52.381 0.00 0.00 0.00 5.03
2593 3668 0.323629 TTTTCTACACCCCAGCTCGG 59.676 55.000 0.00 0.00 0.00 4.63
2594 3669 0.834687 TTTCTACACCCCAGCTCGGT 60.835 55.000 0.00 0.00 0.00 4.69
2607 3682 4.858680 TCGGTGCACCCACGCAAA 62.859 61.111 29.95 4.18 45.14 3.68
2608 3683 3.893763 CGGTGCACCCACGCAAAA 61.894 61.111 29.95 0.00 45.14 2.44
2609 3684 2.496817 GGTGCACCCACGCAAAAA 59.503 55.556 26.31 0.00 45.14 1.94
2657 3732 9.750125 AAAATTCTGAAACTTTGTAGGAATGAC 57.250 29.630 0.00 0.00 0.00 3.06
2658 3733 6.539649 TTCTGAAACTTTGTAGGAATGACG 57.460 37.500 0.00 0.00 0.00 4.35
2659 3734 5.849510 TCTGAAACTTTGTAGGAATGACGA 58.150 37.500 0.00 0.00 0.00 4.20
2660 3735 6.464222 TCTGAAACTTTGTAGGAATGACGAT 58.536 36.000 0.00 0.00 0.00 3.73
2661 3736 6.590292 TCTGAAACTTTGTAGGAATGACGATC 59.410 38.462 0.00 0.00 0.00 3.69
2662 3737 6.227522 TGAAACTTTGTAGGAATGACGATCA 58.772 36.000 0.00 0.00 0.00 2.92
2663 3738 6.708502 TGAAACTTTGTAGGAATGACGATCAA 59.291 34.615 0.00 0.00 0.00 2.57
2664 3739 6.481954 AACTTTGTAGGAATGACGATCAAC 57.518 37.500 0.00 0.00 0.00 3.18
2665 3740 5.547465 ACTTTGTAGGAATGACGATCAACA 58.453 37.500 0.00 0.00 0.00 3.33
2666 3741 5.995282 ACTTTGTAGGAATGACGATCAACAA 59.005 36.000 0.00 0.00 0.00 2.83
2667 3742 6.485313 ACTTTGTAGGAATGACGATCAACAAA 59.515 34.615 0.00 2.64 35.14 2.83
2668 3743 7.174946 ACTTTGTAGGAATGACGATCAACAAAT 59.825 33.333 11.64 4.87 35.51 2.32
2669 3744 6.421377 TGTAGGAATGACGATCAACAAATG 57.579 37.500 0.00 0.00 0.00 2.32
2670 3745 5.937540 TGTAGGAATGACGATCAACAAATGT 59.062 36.000 0.00 0.00 0.00 2.71
2671 3746 5.964958 AGGAATGACGATCAACAAATGTT 57.035 34.783 0.00 0.00 39.12 2.71
2672 3747 7.604545 TGTAGGAATGACGATCAACAAATGTTA 59.395 33.333 0.00 0.00 36.32 2.41
2673 3748 7.630242 AGGAATGACGATCAACAAATGTTAT 57.370 32.000 0.00 0.00 36.32 1.89
2674 3749 7.475015 AGGAATGACGATCAACAAATGTTATG 58.525 34.615 0.00 0.00 36.32 1.90
2675 3750 6.692681 GGAATGACGATCAACAAATGTTATGG 59.307 38.462 0.00 0.00 36.32 2.74
2676 3751 4.980590 TGACGATCAACAAATGTTATGGC 58.019 39.130 0.00 0.00 36.32 4.40
2677 3752 4.142491 TGACGATCAACAAATGTTATGGCC 60.142 41.667 0.00 0.00 36.32 5.36
2678 3753 3.761218 ACGATCAACAAATGTTATGGCCA 59.239 39.130 8.56 8.56 36.32 5.36
2679 3754 4.104776 CGATCAACAAATGTTATGGCCAC 58.895 43.478 8.16 0.00 36.32 5.01
2680 3755 4.142403 CGATCAACAAATGTTATGGCCACT 60.142 41.667 8.16 0.00 36.32 4.00
2681 3756 5.622007 CGATCAACAAATGTTATGGCCACTT 60.622 40.000 8.16 0.00 36.32 3.16
2682 3757 4.880759 TCAACAAATGTTATGGCCACTTG 58.119 39.130 8.16 7.74 36.32 3.16
2683 3758 3.317603 ACAAATGTTATGGCCACTTGC 57.682 42.857 8.16 0.00 40.16 4.01
2684 3759 2.632028 ACAAATGTTATGGCCACTTGCA 59.368 40.909 8.16 5.47 43.89 4.08
2685 3760 3.070734 ACAAATGTTATGGCCACTTGCAA 59.929 39.130 8.16 0.00 43.89 4.08
2686 3761 4.063689 CAAATGTTATGGCCACTTGCAAA 58.936 39.130 8.16 0.00 43.89 3.68
2687 3762 7.675897 AACAAATGTTATGGCCACTTGCAAAG 61.676 38.462 8.16 0.00 42.86 2.77
2698 3773 2.957491 CTTGCAAAGTTTGGTGGTCA 57.043 45.000 17.11 3.47 39.70 4.02
2699 3774 3.244033 CTTGCAAAGTTTGGTGGTCAA 57.756 42.857 17.11 10.67 39.70 3.18
2700 3775 3.594134 CTTGCAAAGTTTGGTGGTCAAA 58.406 40.909 17.11 0.00 39.70 2.69
2701 3776 3.685139 TGCAAAGTTTGGTGGTCAAAA 57.315 38.095 17.11 0.00 45.74 2.44
2702 3777 4.008074 TGCAAAGTTTGGTGGTCAAAAA 57.992 36.364 17.11 0.00 45.74 1.94
2722 3797 6.663944 AAAAACATTCGAGGAGCTATGTAC 57.336 37.500 0.00 0.00 31.40 2.90
2723 3798 5.339008 AAACATTCGAGGAGCTATGTACA 57.661 39.130 0.00 0.00 31.40 2.90
2724 3799 4.576216 ACATTCGAGGAGCTATGTACAG 57.424 45.455 0.33 0.00 29.93 2.74
2725 3800 4.207955 ACATTCGAGGAGCTATGTACAGA 58.792 43.478 0.33 0.00 29.93 3.41
2726 3801 4.645136 ACATTCGAGGAGCTATGTACAGAA 59.355 41.667 0.33 0.00 29.93 3.02
2727 3802 5.127194 ACATTCGAGGAGCTATGTACAGAAA 59.873 40.000 0.33 0.00 29.93 2.52
2728 3803 5.654603 TTCGAGGAGCTATGTACAGAAAA 57.345 39.130 0.33 0.00 0.00 2.29
2729 3804 5.250235 TCGAGGAGCTATGTACAGAAAAG 57.750 43.478 0.33 0.00 0.00 2.27
2730 3805 4.098044 TCGAGGAGCTATGTACAGAAAAGG 59.902 45.833 0.33 0.00 0.00 3.11
2731 3806 4.123506 GAGGAGCTATGTACAGAAAAGGC 58.876 47.826 0.33 0.00 0.00 4.35
2732 3807 3.519510 AGGAGCTATGTACAGAAAAGGCA 59.480 43.478 0.33 0.00 0.00 4.75
2733 3808 4.019321 AGGAGCTATGTACAGAAAAGGCAA 60.019 41.667 0.33 0.00 0.00 4.52
2734 3809 4.700213 GGAGCTATGTACAGAAAAGGCAAA 59.300 41.667 0.33 0.00 0.00 3.68
2735 3810 5.183140 GGAGCTATGTACAGAAAAGGCAAAA 59.817 40.000 0.33 0.00 0.00 2.44
2736 3811 6.127619 GGAGCTATGTACAGAAAAGGCAAAAT 60.128 38.462 0.33 0.00 0.00 1.82
2737 3812 6.856895 AGCTATGTACAGAAAAGGCAAAATC 58.143 36.000 0.33 0.00 0.00 2.17
2738 3813 6.434028 AGCTATGTACAGAAAAGGCAAAATCA 59.566 34.615 0.33 0.00 0.00 2.57
2739 3814 6.528072 GCTATGTACAGAAAAGGCAAAATCAC 59.472 38.462 0.33 0.00 0.00 3.06
2740 3815 6.655078 ATGTACAGAAAAGGCAAAATCACT 57.345 33.333 0.33 0.00 0.00 3.41
2741 3816 5.830912 TGTACAGAAAAGGCAAAATCACTG 58.169 37.500 0.00 0.00 0.00 3.66
2742 3817 5.592282 TGTACAGAAAAGGCAAAATCACTGA 59.408 36.000 0.00 0.00 0.00 3.41
2743 3818 5.596836 ACAGAAAAGGCAAAATCACTGAA 57.403 34.783 0.00 0.00 0.00 3.02
2744 3819 5.976458 ACAGAAAAGGCAAAATCACTGAAA 58.024 33.333 0.00 0.00 0.00 2.69
2745 3820 6.585416 ACAGAAAAGGCAAAATCACTGAAAT 58.415 32.000 0.00 0.00 0.00 2.17
2746 3821 7.049754 ACAGAAAAGGCAAAATCACTGAAATT 58.950 30.769 0.00 0.00 0.00 1.82
2747 3822 7.553760 ACAGAAAAGGCAAAATCACTGAAATTT 59.446 29.630 0.00 0.00 0.00 1.82
2748 3823 9.044150 CAGAAAAGGCAAAATCACTGAAATTTA 57.956 29.630 0.00 0.00 0.00 1.40
2749 3824 9.045223 AGAAAAGGCAAAATCACTGAAATTTAC 57.955 29.630 0.00 0.00 0.00 2.01
2750 3825 8.962884 AAAAGGCAAAATCACTGAAATTTACT 57.037 26.923 0.00 0.00 0.00 2.24
2751 3826 8.593492 AAAGGCAAAATCACTGAAATTTACTC 57.407 30.769 0.00 0.00 0.00 2.59
2752 3827 7.288810 AGGCAAAATCACTGAAATTTACTCA 57.711 32.000 0.00 0.00 0.00 3.41
2753 3828 7.725251 AGGCAAAATCACTGAAATTTACTCAA 58.275 30.769 0.00 0.00 0.00 3.02
2754 3829 8.203485 AGGCAAAATCACTGAAATTTACTCAAA 58.797 29.630 0.00 0.00 0.00 2.69
2755 3830 8.825745 GGCAAAATCACTGAAATTTACTCAAAA 58.174 29.630 0.00 0.00 0.00 2.44
2756 3831 9.636965 GCAAAATCACTGAAATTTACTCAAAAC 57.363 29.630 0.00 0.00 0.00 2.43
2757 3832 9.833894 CAAAATCACTGAAATTTACTCAAAACG 57.166 29.630 0.00 0.00 0.00 3.60
2758 3833 9.581099 AAAATCACTGAAATTTACTCAAAACGT 57.419 25.926 0.00 0.00 0.00 3.99
2777 3852 4.631133 CGTAAGTACACTGTTTGAGCAG 57.369 45.455 0.00 0.00 41.92 4.24
2778 3853 4.295870 CGTAAGTACACTGTTTGAGCAGA 58.704 43.478 1.73 0.00 39.62 4.26
2779 3854 4.923871 CGTAAGTACACTGTTTGAGCAGAT 59.076 41.667 1.73 0.00 39.62 2.90
2780 3855 5.405571 CGTAAGTACACTGTTTGAGCAGATT 59.594 40.000 1.73 0.00 39.62 2.40
2781 3856 6.073765 CGTAAGTACACTGTTTGAGCAGATTT 60.074 38.462 1.73 0.00 39.62 2.17
2782 3857 6.699575 AAGTACACTGTTTGAGCAGATTTT 57.300 33.333 1.73 0.00 39.62 1.82
2783 3858 6.064846 AGTACACTGTTTGAGCAGATTTTG 57.935 37.500 1.73 0.00 39.62 2.44
2784 3859 4.989279 ACACTGTTTGAGCAGATTTTGT 57.011 36.364 1.73 0.00 39.62 2.83
2785 3860 6.765989 AGTACACTGTTTGAGCAGATTTTGTA 59.234 34.615 1.73 0.00 39.62 2.41
2786 3861 6.449635 ACACTGTTTGAGCAGATTTTGTAA 57.550 33.333 1.73 0.00 39.62 2.41
2787 3862 7.042797 ACACTGTTTGAGCAGATTTTGTAAT 57.957 32.000 1.73 0.00 39.62 1.89
2788 3863 7.491682 ACACTGTTTGAGCAGATTTTGTAATT 58.508 30.769 1.73 0.00 39.62 1.40
2789 3864 7.981225 ACACTGTTTGAGCAGATTTTGTAATTT 59.019 29.630 1.73 0.00 39.62 1.82
2790 3865 8.819974 CACTGTTTGAGCAGATTTTGTAATTTT 58.180 29.630 1.73 0.00 39.62 1.82
2791 3866 8.819974 ACTGTTTGAGCAGATTTTGTAATTTTG 58.180 29.630 1.73 0.00 39.62 2.44
2792 3867 8.715191 TGTTTGAGCAGATTTTGTAATTTTGT 57.285 26.923 0.00 0.00 0.00 2.83
2793 3868 9.809096 TGTTTGAGCAGATTTTGTAATTTTGTA 57.191 25.926 0.00 0.00 0.00 2.41
2815 3890 3.469008 TTTTTGAACAGAGCTCCTCGA 57.531 42.857 10.93 1.91 35.36 4.04
2816 3891 3.469008 TTTTGAACAGAGCTCCTCGAA 57.531 42.857 10.93 8.25 35.36 3.71
2817 3892 3.685139 TTTGAACAGAGCTCCTCGAAT 57.315 42.857 10.93 0.00 35.36 3.34
2818 3893 2.662006 TGAACAGAGCTCCTCGAATG 57.338 50.000 10.93 3.23 35.36 2.67
2819 3894 1.895798 TGAACAGAGCTCCTCGAATGT 59.104 47.619 10.93 3.96 35.36 2.71
2820 3895 2.300152 TGAACAGAGCTCCTCGAATGTT 59.700 45.455 14.53 14.53 35.36 2.71
2821 3896 3.509967 TGAACAGAGCTCCTCGAATGTTA 59.490 43.478 10.93 0.71 35.36 2.41
2822 3897 4.160439 TGAACAGAGCTCCTCGAATGTTAT 59.840 41.667 10.93 0.00 35.36 1.89
2823 3898 4.744795 ACAGAGCTCCTCGAATGTTATT 57.255 40.909 10.93 0.00 35.36 1.40
2824 3899 5.091261 ACAGAGCTCCTCGAATGTTATTT 57.909 39.130 10.93 0.00 35.36 1.40
2825 3900 5.491982 ACAGAGCTCCTCGAATGTTATTTT 58.508 37.500 10.93 0.00 35.36 1.82
2826 3901 6.640518 ACAGAGCTCCTCGAATGTTATTTTA 58.359 36.000 10.93 0.00 35.36 1.52
2827 3902 6.535508 ACAGAGCTCCTCGAATGTTATTTTAC 59.464 38.462 10.93 0.00 35.36 2.01
2828 3903 6.018669 CAGAGCTCCTCGAATGTTATTTTACC 60.019 42.308 10.93 0.00 35.36 2.85
2829 3904 5.741011 AGCTCCTCGAATGTTATTTTACCA 58.259 37.500 0.00 0.00 0.00 3.25
2830 3905 6.357367 AGCTCCTCGAATGTTATTTTACCAT 58.643 36.000 0.00 0.00 0.00 3.55
2831 3906 6.483640 AGCTCCTCGAATGTTATTTTACCATC 59.516 38.462 0.00 0.00 0.00 3.51
2832 3907 6.260050 GCTCCTCGAATGTTATTTTACCATCA 59.740 38.462 0.00 0.00 0.00 3.07
2833 3908 7.201696 GCTCCTCGAATGTTATTTTACCATCAA 60.202 37.037 0.00 0.00 0.00 2.57
2834 3909 8.568676 TCCTCGAATGTTATTTTACCATCAAA 57.431 30.769 0.00 0.00 0.00 2.69
2835 3910 8.455682 TCCTCGAATGTTATTTTACCATCAAAC 58.544 33.333 0.00 0.00 0.00 2.93
2836 3911 8.458843 CCTCGAATGTTATTTTACCATCAAACT 58.541 33.333 0.00 0.00 0.00 2.66
2837 3912 9.840427 CTCGAATGTTATTTTACCATCAAACTT 57.160 29.630 0.00 0.00 0.00 2.66
2841 3916 9.553064 AATGTTATTTTACCATCAAACTTTGCA 57.447 25.926 0.00 0.00 0.00 4.08
2842 3917 8.948631 TGTTATTTTACCATCAAACTTTGCAA 57.051 26.923 0.00 0.00 0.00 4.08
2843 3918 9.039870 TGTTATTTTACCATCAAACTTTGCAAG 57.960 29.630 0.00 0.00 0.00 4.01
2844 3919 9.040939 GTTATTTTACCATCAAACTTTGCAAGT 57.959 29.630 0.00 0.00 45.46 3.16
2845 3920 6.900568 TTTTACCATCAAACTTTGCAAGTG 57.099 33.333 0.00 0.00 41.91 3.16
2846 3921 2.825205 ACCATCAAACTTTGCAAGTGC 58.175 42.857 0.00 0.00 41.91 4.40
2847 3922 2.137523 CCATCAAACTTTGCAAGTGCC 58.862 47.619 0.00 0.00 41.91 5.01
2848 3923 2.137523 CATCAAACTTTGCAAGTGCCC 58.862 47.619 0.00 0.00 41.91 5.36
2849 3924 1.189752 TCAAACTTTGCAAGTGCCCA 58.810 45.000 0.00 0.00 41.91 5.36
2850 3925 1.761784 TCAAACTTTGCAAGTGCCCAT 59.238 42.857 0.00 0.00 41.91 4.00
2851 3926 2.961741 TCAAACTTTGCAAGTGCCCATA 59.038 40.909 0.00 0.00 41.91 2.74
2852 3927 3.386078 TCAAACTTTGCAAGTGCCCATAA 59.614 39.130 0.00 0.00 41.91 1.90
2853 3928 3.385193 AACTTTGCAAGTGCCCATAAC 57.615 42.857 0.00 0.00 41.91 1.89
2854 3929 2.315176 ACTTTGCAAGTGCCCATAACA 58.685 42.857 0.00 0.00 41.01 2.41
2855 3930 2.899256 ACTTTGCAAGTGCCCATAACAT 59.101 40.909 0.00 0.00 41.01 2.71
2856 3931 3.324556 ACTTTGCAAGTGCCCATAACATT 59.675 39.130 0.00 0.00 41.01 2.71
2857 3932 4.202346 ACTTTGCAAGTGCCCATAACATTT 60.202 37.500 0.00 0.00 41.01 2.32
2858 3933 3.316071 TGCAAGTGCCCATAACATTTG 57.684 42.857 0.00 0.00 41.18 2.32
2859 3934 2.632028 TGCAAGTGCCCATAACATTTGT 59.368 40.909 0.00 0.00 41.18 2.83
2860 3935 3.070734 TGCAAGTGCCCATAACATTTGTT 59.929 39.130 0.00 1.08 41.18 2.83
2861 3936 3.432933 GCAAGTGCCCATAACATTTGTTG 59.567 43.478 6.21 0.00 37.16 3.33
2862 3937 4.798924 GCAAGTGCCCATAACATTTGTTGA 60.799 41.667 6.21 0.00 37.16 3.18
2863 3938 5.481105 CAAGTGCCCATAACATTTGTTGAT 58.519 37.500 6.21 0.00 38.90 2.57
2864 3939 5.075858 AGTGCCCATAACATTTGTTGATG 57.924 39.130 6.21 6.19 38.90 3.07
2865 3940 4.771577 AGTGCCCATAACATTTGTTGATGA 59.228 37.500 6.21 0.00 38.90 2.92
2866 3941 5.422970 AGTGCCCATAACATTTGTTGATGAT 59.577 36.000 6.21 0.00 38.90 2.45
2867 3942 5.750067 GTGCCCATAACATTTGTTGATGATC 59.250 40.000 6.21 0.00 38.90 2.92
2868 3943 5.421374 TGCCCATAACATTTGTTGATGATCA 59.579 36.000 0.00 0.00 38.90 2.92
2869 3944 6.098552 TGCCCATAACATTTGTTGATGATCAT 59.901 34.615 8.25 8.25 38.90 2.45
2870 3945 6.987992 GCCCATAACATTTGTTGATGATCATT 59.012 34.615 10.14 0.00 38.90 2.57
2871 3946 7.170320 GCCCATAACATTTGTTGATGATCATTC 59.830 37.037 10.14 4.08 38.90 2.67
2872 3947 7.654520 CCCATAACATTTGTTGATGATCATTCC 59.345 37.037 10.14 0.00 38.90 3.01
2873 3948 8.418662 CCATAACATTTGTTGATGATCATTCCT 58.581 33.333 10.14 0.00 38.90 3.36
2876 3951 7.943079 ACATTTGTTGATGATCATTCCTACA 57.057 32.000 10.14 8.42 0.00 2.74
2877 3952 8.352137 ACATTTGTTGATGATCATTCCTACAA 57.648 30.769 10.14 13.57 0.00 2.41
2878 3953 8.805175 ACATTTGTTGATGATCATTCCTACAAA 58.195 29.630 24.92 24.92 38.24 2.83
2879 3954 9.297586 CATTTGTTGATGATCATTCCTACAAAG 57.702 33.333 25.78 19.00 37.57 2.77
2880 3955 8.408043 TTTGTTGATGATCATTCCTACAAAGT 57.592 30.769 21.82 0.00 32.42 2.66
2881 3956 8.408043 TTGTTGATGATCATTCCTACAAAGTT 57.592 30.769 10.14 0.00 0.00 2.66
2882 3957 8.408043 TGTTGATGATCATTCCTACAAAGTTT 57.592 30.769 10.14 0.00 0.00 2.66
2883 3958 8.514594 TGTTGATGATCATTCCTACAAAGTTTC 58.485 33.333 10.14 0.00 0.00 2.78
2884 3959 8.514594 GTTGATGATCATTCCTACAAAGTTTCA 58.485 33.333 10.14 0.00 0.00 2.69
2885 3960 8.272545 TGATGATCATTCCTACAAAGTTTCAG 57.727 34.615 10.14 0.00 0.00 3.02
2886 3961 8.102676 TGATGATCATTCCTACAAAGTTTCAGA 58.897 33.333 10.14 0.00 0.00 3.27
2887 3962 8.868522 ATGATCATTCCTACAAAGTTTCAGAA 57.131 30.769 1.18 0.00 0.00 3.02
2888 3963 8.868522 TGATCATTCCTACAAAGTTTCAGAAT 57.131 30.769 0.00 0.00 0.00 2.40
2889 3964 9.300681 TGATCATTCCTACAAAGTTTCAGAATT 57.699 29.630 0.00 0.00 0.00 2.17
2922 3997 7.630470 TGTTTTATTATGTTTTCTTGCGTGG 57.370 32.000 0.00 0.00 0.00 4.94
2923 3998 6.642950 TGTTTTATTATGTTTTCTTGCGTGGG 59.357 34.615 0.00 0.00 0.00 4.61
2924 3999 5.968528 TTATTATGTTTTCTTGCGTGGGT 57.031 34.783 0.00 0.00 0.00 4.51
2925 4000 3.634568 TTATGTTTTCTTGCGTGGGTG 57.365 42.857 0.00 0.00 0.00 4.61
2926 4001 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01
2927 4002 1.315981 TGTTTTCTTGCGTGGGTGCA 61.316 50.000 0.00 0.00 44.61 4.57
2928 4003 0.869880 GTTTTCTTGCGTGGGTGCAC 60.870 55.000 8.80 8.80 46.25 4.57
2929 4004 2.010582 TTTTCTTGCGTGGGTGCACC 62.011 55.000 28.57 28.57 46.25 5.01
2939 4014 4.643387 GGTGCACCGAGCTGGGTT 62.643 66.667 22.49 0.50 45.94 4.11
2940 4015 3.050275 GTGCACCGAGCTGGGTTC 61.050 66.667 19.00 14.51 45.94 3.62
2941 4016 3.555324 TGCACCGAGCTGGGTTCA 61.555 61.111 19.00 17.29 45.94 3.18
2942 4017 2.743928 GCACCGAGCTGGGTTCAG 60.744 66.667 19.00 8.53 44.64 3.02
2950 4025 3.488423 CTGGGTTCAGCCACTCCT 58.512 61.111 0.00 0.00 39.65 3.69
2951 4026 1.763770 CTGGGTTCAGCCACTCCTT 59.236 57.895 0.00 0.00 39.65 3.36
2952 4027 0.111253 CTGGGTTCAGCCACTCCTTT 59.889 55.000 0.00 0.00 39.65 3.11
2953 4028 0.110486 TGGGTTCAGCCACTCCTTTC 59.890 55.000 0.00 0.00 39.65 2.62
2954 4029 0.609406 GGGTTCAGCCACTCCTTTCC 60.609 60.000 0.00 0.00 39.65 3.13
2955 4030 0.609406 GGTTCAGCCACTCCTTTCCC 60.609 60.000 0.00 0.00 37.17 3.97
2956 4031 0.402121 GTTCAGCCACTCCTTTCCCT 59.598 55.000 0.00 0.00 0.00 4.20
2957 4032 1.628846 GTTCAGCCACTCCTTTCCCTA 59.371 52.381 0.00 0.00 0.00 3.53
2958 4033 2.038863 TCAGCCACTCCTTTCCCTAA 57.961 50.000 0.00 0.00 0.00 2.69
2959 4034 2.344592 TCAGCCACTCCTTTCCCTAAA 58.655 47.619 0.00 0.00 0.00 1.85
2960 4035 2.305927 TCAGCCACTCCTTTCCCTAAAG 59.694 50.000 0.00 0.00 41.57 1.85
2961 4036 2.305927 CAGCCACTCCTTTCCCTAAAGA 59.694 50.000 0.00 0.00 44.14 2.52
2962 4037 2.986728 AGCCACTCCTTTCCCTAAAGAA 59.013 45.455 0.00 0.00 44.14 2.52
2963 4038 3.593780 AGCCACTCCTTTCCCTAAAGAAT 59.406 43.478 0.00 0.00 44.14 2.40
2964 4039 3.696548 GCCACTCCTTTCCCTAAAGAATG 59.303 47.826 0.00 0.00 44.14 2.67
2977 4052 7.153985 TCCCTAAAGAATGAACATTTTTGCTG 58.846 34.615 1.56 0.00 0.00 4.41
3085 4162 5.933187 TTTTCTTGTATGCTCGTTGCTAA 57.067 34.783 5.00 0.00 43.37 3.09
3423 4643 8.657074 TGAAATTAATGTTCTCCTATGTACCG 57.343 34.615 0.00 0.00 0.00 4.02
3428 4648 5.670792 ATGTTCTCCTATGTACCGACAAA 57.329 39.130 0.00 0.00 39.59 2.83
3503 4732 0.952010 GAACCGGCTACCTTTCGCAA 60.952 55.000 0.00 0.00 0.00 4.85
3529 4758 5.882557 ACAGAAGTTGGCATATTTCTACCTG 59.117 40.000 7.91 0.00 0.00 4.00
3556 4785 1.746615 CAGCACCATGTTCCCTCCG 60.747 63.158 0.00 0.00 0.00 4.63
3708 4938 9.977762 ACAATATTTACGTCGGTTATTTTTCTC 57.022 29.630 0.00 0.00 0.00 2.87
3710 4940 5.861222 TTTACGTCGGTTATTTTTCTCCC 57.139 39.130 0.00 0.00 0.00 4.30
3721 4951 7.042992 CGGTTATTTTTCTCCCAAAACAAAGTC 60.043 37.037 0.00 0.00 0.00 3.01
3734 4964 5.447624 AAACAAAGTCGGGTTTCTTATGG 57.552 39.130 0.00 0.00 32.00 2.74
3750 4980 9.444600 GTTTCTTATGGTTATCCTAGTTTGTCA 57.555 33.333 0.00 0.00 34.23 3.58
3763 4993 0.465460 TTTGTCACAGGTGGGAGCAC 60.465 55.000 0.00 0.00 0.00 4.40
3817 5047 2.926200 CGAGATCGTGTTCTCTGCAATT 59.074 45.455 6.43 0.00 40.03 2.32
3912 5143 9.331282 AGTAGAAATTGTTAGTCTAATCATGCC 57.669 33.333 0.00 0.00 0.00 4.40
3973 5205 2.194859 ACTGATGATCTCCCAGTTGCT 58.805 47.619 8.65 0.00 37.86 3.91
3978 5210 4.471025 TGATGATCTCCCAGTTGCTTTCTA 59.529 41.667 0.00 0.00 0.00 2.10
4107 5339 2.573340 GGCCCAATTGTGCTTCCG 59.427 61.111 12.74 0.00 0.00 4.30
4110 5342 2.179018 CCAATTGTGCTTCCGGCG 59.821 61.111 0.00 0.00 45.43 6.46
4184 5416 3.467803 ACAGTGAGTTGTTTAGGCTGAC 58.532 45.455 0.00 0.00 0.00 3.51
4249 5668 6.978659 CGAGGTATCTTGCACAAGTTATTCTA 59.021 38.462 10.05 0.00 39.38 2.10
4252 5671 9.515226 AGGTATCTTGCACAAGTTATTCTAAAA 57.485 29.630 10.05 0.00 39.38 1.52
4270 5689 9.757859 ATTCTAAAATTTAATTTGCATGCGTTG 57.242 25.926 14.09 0.00 31.77 4.10
4311 5730 8.189709 TCAGATAAATGTGTCTTGAATTCTCG 57.810 34.615 7.05 0.00 0.00 4.04
4323 5742 5.412286 TCTTGAATTCTCGTGATGCAATTGA 59.588 36.000 10.34 0.00 0.00 2.57
4335 5754 5.049167 TGATGCAATTGACAAACTCCAAAC 58.951 37.500 10.34 0.00 0.00 2.93
4340 5759 6.128336 TGCAATTGACAAACTCCAAACAAAAG 60.128 34.615 10.34 0.00 0.00 2.27
4342 5761 7.572910 GCAATTGACAAACTCCAAACAAAAGTT 60.573 33.333 10.34 0.00 34.81 2.66
4345 5764 5.694006 TGACAAACTCCAAACAAAAGTTGTG 59.306 36.000 0.00 0.00 44.59 3.33
4347 5766 3.245518 ACTCCAAACAAAAGTTGTGGC 57.754 42.857 0.00 0.00 44.59 5.01
4349 5768 3.197549 ACTCCAAACAAAAGTTGTGGCAT 59.802 39.130 0.00 0.00 44.59 4.40
4350 5769 3.791245 TCCAAACAAAAGTTGTGGCATC 58.209 40.909 0.00 0.00 44.59 3.91
4367 5788 6.127925 TGTGGCATCATAGCTAACAAAAAGAG 60.128 38.462 0.00 0.00 31.47 2.85
4414 5837 4.531339 AGGGAGTACAAAGAGGGTAAACTC 59.469 45.833 0.00 0.00 37.77 3.01
4443 5866 0.389025 TCTCTGCTCGTGCTTCACAA 59.611 50.000 11.19 0.00 40.48 3.33
4454 5877 2.490903 GTGCTTCACAATGATGGCTCTT 59.509 45.455 0.00 0.00 34.08 2.85
4459 5882 4.025040 TCACAATGATGGCTCTTTGACT 57.975 40.909 14.71 0.00 38.28 3.41
4501 5924 0.253044 TGCAGAAGCCCATAGACACC 59.747 55.000 0.00 0.00 41.13 4.16
4731 6154 7.064609 CCTTGATTTATCTACTTTGCGTGAGAA 59.935 37.037 0.00 0.00 0.00 2.87
4734 6157 8.227791 TGATTTATCTACTTTGCGTGAGAAAAC 58.772 33.333 0.00 0.00 32.48 2.43
4744 6167 4.597079 TGCGTGAGAAAACAAAGATCAAC 58.403 39.130 0.00 0.00 0.00 3.18
4780 6203 6.908825 ACTTCATGTTTATATTGTTGTGCGT 58.091 32.000 0.00 0.00 0.00 5.24
4782 6205 5.092105 TCATGTTTATATTGTTGTGCGTGC 58.908 37.500 0.00 0.00 0.00 5.34
4824 6247 7.387673 GCATATGCATCCTTGTGTTATAGTGTA 59.612 37.037 22.84 0.00 41.59 2.90
4825 6248 8.929746 CATATGCATCCTTGTGTTATAGTGTAG 58.070 37.037 0.19 0.00 0.00 2.74
4826 6249 5.116180 TGCATCCTTGTGTTATAGTGTAGC 58.884 41.667 0.00 0.00 0.00 3.58
4827 6250 4.511826 GCATCCTTGTGTTATAGTGTAGCC 59.488 45.833 0.00 0.00 0.00 3.93
4828 6251 5.685075 GCATCCTTGTGTTATAGTGTAGCCT 60.685 44.000 0.00 0.00 0.00 4.58
4829 6252 6.462487 GCATCCTTGTGTTATAGTGTAGCCTA 60.462 42.308 0.00 0.00 0.00 3.93
4830 6253 7.497595 CATCCTTGTGTTATAGTGTAGCCTAA 58.502 38.462 0.00 0.00 0.00 2.69
4831 6254 7.484993 TCCTTGTGTTATAGTGTAGCCTAAA 57.515 36.000 0.00 0.00 0.00 1.85
4832 6255 8.086143 TCCTTGTGTTATAGTGTAGCCTAAAT 57.914 34.615 0.00 0.00 0.00 1.40
4833 6256 9.204337 TCCTTGTGTTATAGTGTAGCCTAAATA 57.796 33.333 0.00 0.00 0.00 1.40
4834 6257 9.998106 CCTTGTGTTATAGTGTAGCCTAAATAT 57.002 33.333 0.00 0.00 0.00 1.28
4836 6259 9.687210 TTGTGTTATAGTGTAGCCTAAATATCG 57.313 33.333 0.00 0.00 0.00 2.92
4837 6260 9.070179 TGTGTTATAGTGTAGCCTAAATATCGA 57.930 33.333 0.00 0.00 0.00 3.59
5117 6554 2.206750 TGTTTGTGGAAGTCTACGCAC 58.793 47.619 0.00 0.00 0.00 5.34
5145 6582 9.598517 AAAACAAATCAATCTGCAAAAGACTAA 57.401 25.926 0.00 0.00 37.88 2.24
5351 6803 1.858458 CACTTTCGAGCTTGAACGACA 59.142 47.619 23.24 6.44 38.24 4.35
5424 6881 1.943623 ATTTGCATTTTCACGCGCGC 61.944 50.000 32.58 23.91 0.00 6.86
5465 6922 3.737559 TGCAGGAAACCCTCATACAAT 57.262 42.857 0.00 0.00 0.00 2.71
5470 6927 5.690097 GCAGGAAACCCTCATACAATATGGA 60.690 44.000 0.00 0.00 0.00 3.41
5485 6942 6.668323 ACAATATGGAAAATATGCGTGCTAC 58.332 36.000 0.00 0.00 0.00 3.58
5534 6991 1.072015 GTAGAGTAGCCGCCTCCTAGA 59.928 57.143 0.00 0.00 0.00 2.43
5541 6998 2.725008 CGCCTCCTAGAAGCCTCG 59.275 66.667 0.00 0.00 0.00 4.63
5546 7003 3.838271 CCTAGAAGCCTCGCCGCA 61.838 66.667 0.00 0.00 0.00 5.69
5548 7005 3.356639 CTAGAAGCCTCGCCGCACA 62.357 63.158 0.00 0.00 0.00 4.57
5593 7050 2.821366 CGCTGACCTCACATGGCC 60.821 66.667 0.00 0.00 0.00 5.36
5615 7072 2.499827 GCCCTAGGACGCTCCGATT 61.500 63.158 11.48 0.00 42.75 3.34
5621 7078 1.143183 GGACGCTCCGATTTGCCTA 59.857 57.895 0.00 0.00 0.00 3.93
5718 7176 0.320374 TTGATTTCGTCACGCCCTCT 59.680 50.000 0.00 0.00 36.32 3.69
5721 7179 0.389948 ATTTCGTCACGCCCTCTCAC 60.390 55.000 0.00 0.00 0.00 3.51
5745 7203 3.222855 CCCCGCGAGAGATGAGCT 61.223 66.667 8.23 0.00 0.00 4.09
5746 7204 1.899054 CCCCGCGAGAGATGAGCTA 60.899 63.158 8.23 0.00 0.00 3.32
5747 7205 1.578926 CCCGCGAGAGATGAGCTAG 59.421 63.158 8.23 0.00 0.00 3.42
5748 7206 1.169661 CCCGCGAGAGATGAGCTAGT 61.170 60.000 8.23 0.00 0.00 2.57
5749 7207 0.237235 CCGCGAGAGATGAGCTAGTC 59.763 60.000 8.23 0.00 0.00 2.59
5750 7208 0.940833 CGCGAGAGATGAGCTAGTCA 59.059 55.000 0.00 0.00 40.38 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.364317 TTGAGGCTAGGGCGAGCT 60.364 61.111 9.54 0.00 42.43 4.09
73 74 4.778143 ACATCGGCGGGAAGGTGC 62.778 66.667 7.21 0.00 0.00 5.01
150 186 3.367743 AGCATGCCCGCAACACAG 61.368 61.111 15.66 0.00 0.00 3.66
151 187 3.672447 CAGCATGCCCGCAACACA 61.672 61.111 15.66 0.00 0.00 3.72
152 188 3.332493 CTCAGCATGCCCGCAACAC 62.332 63.158 15.66 0.00 34.76 3.32
153 189 3.057548 CTCAGCATGCCCGCAACA 61.058 61.111 15.66 0.00 34.76 3.33
154 190 4.487412 GCTCAGCATGCCCGCAAC 62.487 66.667 15.66 0.00 34.76 4.17
159 195 3.200593 CTCGTGCTCAGCATGCCC 61.201 66.667 14.59 0.90 44.29 5.36
160 196 3.200593 CCTCGTGCTCAGCATGCC 61.201 66.667 14.59 0.00 44.29 4.40
161 197 3.873883 GCCTCGTGCTCAGCATGC 61.874 66.667 14.59 10.51 44.29 4.06
162 198 3.200593 GGCCTCGTGCTCAGCATG 61.201 66.667 13.16 13.16 45.79 4.06
163 199 4.827087 CGGCCTCGTGCTCAGCAT 62.827 66.667 0.54 0.00 41.91 3.79
310 361 4.831307 CGTCCTCGCCGGAGTTCG 62.831 72.222 5.05 0.00 44.20 3.95
376 427 4.808364 GTCTTGGCAAAAACTTTACATGCA 59.192 37.500 0.00 0.00 38.73 3.96
378 429 5.050837 GCTGTCTTGGCAAAAACTTTACATG 60.051 40.000 0.00 0.00 0.00 3.21
385 436 1.683385 GGAGCTGTCTTGGCAAAAACT 59.317 47.619 0.00 0.00 0.00 2.66
386 437 1.683385 AGGAGCTGTCTTGGCAAAAAC 59.317 47.619 0.00 3.39 0.00 2.43
398 449 3.301274 GGACCAGACTATAAGGAGCTGT 58.699 50.000 0.00 0.00 0.00 4.40
409 460 0.178984 TGACACGTGGGACCAGACTA 60.179 55.000 21.57 0.00 0.00 2.59
465 516 9.618410 CGTTTCTAGTAAACTTTTTGCAAATTG 57.382 29.630 13.65 11.14 0.00 2.32
472 523 8.555166 TCATTGCGTTTCTAGTAAACTTTTTG 57.445 30.769 12.75 7.86 0.00 2.44
493 544 7.938490 AGTCCCTAATTTTGTGCAAAAATCATT 59.062 29.630 13.13 3.85 42.71 2.57
494 545 7.452562 AGTCCCTAATTTTGTGCAAAAATCAT 58.547 30.769 13.13 0.00 42.71 2.45
503 554 3.694566 CCACCTAGTCCCTAATTTTGTGC 59.305 47.826 0.00 0.00 0.00 4.57
541 592 5.184287 CGTAAAAATCCACCACATTTAGGGT 59.816 40.000 0.00 0.00 38.10 4.34
545 596 8.024285 GTGAATCGTAAAAATCCACCACATTTA 58.976 33.333 0.00 0.00 0.00 1.40
557 608 9.307121 CTCATACTCAGAGTGAATCGTAAAAAT 57.693 33.333 13.84 0.00 0.00 1.82
563 614 3.242903 CGCTCATACTCAGAGTGAATCGT 60.243 47.826 13.84 0.00 44.30 3.73
565 616 4.041049 CACGCTCATACTCAGAGTGAATC 58.959 47.826 13.84 0.00 42.48 2.52
825 882 1.293498 CCTCTGTTCCACTCACGGG 59.707 63.158 0.00 0.00 0.00 5.28
857 914 7.222224 GCCGGATATTTTATTCTATACGAGGTG 59.778 40.741 5.05 0.00 34.30 4.00
858 915 7.263496 GCCGGATATTTTATTCTATACGAGGT 58.737 38.462 5.05 0.00 34.30 3.85
859 916 6.700520 GGCCGGATATTTTATTCTATACGAGG 59.299 42.308 5.05 0.00 34.30 4.63
861 918 6.267817 CGGCCGGATATTTTATTCTATACGA 58.732 40.000 20.10 0.00 34.30 3.43
862 919 5.051240 GCGGCCGGATATTTTATTCTATACG 60.051 44.000 29.38 0.00 32.59 3.06
863 920 5.813672 TGCGGCCGGATATTTTATTCTATAC 59.186 40.000 29.38 3.29 0.00 1.47
880 941 2.173669 CCTATCTGTGTTGCGGCCG 61.174 63.158 24.05 24.05 0.00 6.13
881 942 0.392461 TTCCTATCTGTGTTGCGGCC 60.392 55.000 0.00 0.00 0.00 6.13
882 943 1.009829 CTTCCTATCTGTGTTGCGGC 58.990 55.000 0.00 0.00 0.00 6.53
883 944 1.066143 ACCTTCCTATCTGTGTTGCGG 60.066 52.381 0.00 0.00 0.00 5.69
884 945 2.093973 AGACCTTCCTATCTGTGTTGCG 60.094 50.000 0.00 0.00 0.00 4.85
890 951 1.115467 CGCCAGACCTTCCTATCTGT 58.885 55.000 0.00 0.00 40.70 3.41
905 966 5.503662 TCAGTTTATATAGAACGTCGCCA 57.496 39.130 0.00 0.00 32.38 5.69
913 974 8.749026 AGACTCGGAGTTCAGTTTATATAGAA 57.251 34.615 12.67 0.00 0.00 2.10
914 975 8.749026 AAGACTCGGAGTTCAGTTTATATAGA 57.251 34.615 12.67 0.00 0.00 1.98
939 1419 0.030235 CGAGTGTGTGGTCGAGTGAA 59.970 55.000 0.00 0.00 38.50 3.18
992 1520 1.727511 ATTCACCATCATTGCCGCCG 61.728 55.000 0.00 0.00 0.00 6.46
997 1525 0.031178 GGCGGATTCACCATCATTGC 59.969 55.000 0.00 0.00 38.90 3.56
1123 1651 1.360911 GCAGGCTACCTCTAGCGAC 59.639 63.158 0.00 0.00 45.82 5.19
1124 1652 1.828660 GGCAGGCTACCTCTAGCGA 60.829 63.158 0.00 0.00 45.82 4.93
1125 1653 2.731374 GGCAGGCTACCTCTAGCG 59.269 66.667 0.00 0.00 45.82 4.26
1126 1654 2.128507 ACGGCAGGCTACCTCTAGC 61.129 63.158 1.54 0.00 44.34 3.42
1127 1655 1.736586 CACGGCAGGCTACCTCTAG 59.263 63.158 1.54 0.00 0.00 2.43
1128 1656 2.423898 GCACGGCAGGCTACCTCTA 61.424 63.158 1.54 0.00 0.00 2.43
1129 1657 3.775654 GCACGGCAGGCTACCTCT 61.776 66.667 1.54 0.00 0.00 3.69
1130 1658 3.316573 AAGCACGGCAGGCTACCTC 62.317 63.158 1.54 0.00 41.66 3.85
1131 1659 3.322466 AAGCACGGCAGGCTACCT 61.322 61.111 1.54 0.00 41.66 3.08
1186 1725 4.815040 TCTCTCCGACGATAAAAGCTAG 57.185 45.455 0.00 0.00 0.00 3.42
1217 1756 1.994916 AATTAGCAATGCGGCACAAC 58.005 45.000 4.03 0.00 35.83 3.32
1222 1761 6.084277 GGTTAGTTATAATTAGCAATGCGGC 58.916 40.000 0.00 0.00 0.00 6.53
1237 1776 9.392259 GTAGGTCTAGCATTTTTGGTTAGTTAT 57.608 33.333 0.00 0.00 0.00 1.89
1238 1777 7.825761 GGTAGGTCTAGCATTTTTGGTTAGTTA 59.174 37.037 2.69 0.00 34.00 2.24
1262 1801 4.076175 AGGTCACCTAATACCTCTTGGT 57.924 45.455 0.00 0.00 42.60 3.67
1263 1802 4.037684 CGTAGGTCACCTAATACCTCTTGG 59.962 50.000 4.67 0.00 42.60 3.61
1264 1803 4.885907 TCGTAGGTCACCTAATACCTCTTG 59.114 45.833 4.67 0.00 42.60 3.02
1279 1818 4.190001 GGAAAGAGGGATTTTCGTAGGTC 58.810 47.826 0.00 0.00 35.81 3.85
1303 1884 8.196771 TGGCAGCTTTTAATTTGATATTAGTGG 58.803 33.333 0.00 0.00 0.00 4.00
1314 1895 2.890945 ACGAGGTGGCAGCTTTTAATTT 59.109 40.909 21.55 0.00 0.00 1.82
1325 1906 3.846405 AAGGAGGGACGAGGTGGCA 62.846 63.158 0.00 0.00 0.00 4.92
1327 1908 1.139058 CATAAAGGAGGGACGAGGTGG 59.861 57.143 0.00 0.00 0.00 4.61
1334 1915 6.224584 GTCTTACATAGCATAAAGGAGGGAC 58.775 44.000 0.00 0.00 0.00 4.46
1339 1920 9.555727 GTAATTGGTCTTACATAGCATAAAGGA 57.444 33.333 0.00 0.00 32.87 3.36
1340 1921 8.495949 CGTAATTGGTCTTACATAGCATAAAGG 58.504 37.037 0.00 0.00 32.27 3.11
1341 1922 9.042008 ACGTAATTGGTCTTACATAGCATAAAG 57.958 33.333 0.00 0.00 32.27 1.85
1342 1923 8.951787 ACGTAATTGGTCTTACATAGCATAAA 57.048 30.769 0.00 0.00 32.27 1.40
1344 1925 8.301720 CCTACGTAATTGGTCTTACATAGCATA 58.698 37.037 0.00 0.00 30.04 3.14
1345 1926 7.152645 CCTACGTAATTGGTCTTACATAGCAT 58.847 38.462 0.00 0.00 30.04 3.79
1347 1928 6.420008 CACCTACGTAATTGGTCTTACATAGC 59.580 42.308 2.16 0.00 33.67 2.97
1350 1931 6.290294 ACACCTACGTAATTGGTCTTACAT 57.710 37.500 2.16 0.00 33.67 2.29
1351 1932 5.726980 ACACCTACGTAATTGGTCTTACA 57.273 39.130 2.16 0.00 33.67 2.41
1352 1933 5.745769 GCTACACCTACGTAATTGGTCTTAC 59.254 44.000 2.16 0.00 33.67 2.34
1354 1935 4.221262 TGCTACACCTACGTAATTGGTCTT 59.779 41.667 2.16 0.00 33.67 3.01
1355 1936 3.765511 TGCTACACCTACGTAATTGGTCT 59.234 43.478 2.16 0.00 33.67 3.85
1357 1938 4.540359 TTGCTACACCTACGTAATTGGT 57.460 40.909 0.00 0.00 36.80 3.67
1359 1940 6.367969 AGAGTTTTGCTACACCTACGTAATTG 59.632 38.462 0.00 0.00 0.00 2.32
1360 1941 6.461640 AGAGTTTTGCTACACCTACGTAATT 58.538 36.000 0.00 0.00 0.00 1.40
1365 2027 5.924825 AGTTAAGAGTTTTGCTACACCTACG 59.075 40.000 0.00 0.00 0.00 3.51
1385 2047 7.889469 ACCGATTGAAGACTGTTAGTTAGTTA 58.111 34.615 0.00 0.00 0.00 2.24
1419 2081 7.290061 TCTTGGCCACTGCTATAATAAAGAAT 58.710 34.615 3.88 0.00 37.74 2.40
1420 2082 6.658849 TCTTGGCCACTGCTATAATAAAGAA 58.341 36.000 3.88 0.00 37.74 2.52
1453 2115 2.293122 TCGCAACATTTCCTCCAACTTG 59.707 45.455 0.00 0.00 0.00 3.16
1576 2238 8.361592 TGCAAGAAGAAGTACTAAAGTTGTAC 57.638 34.615 0.00 0.00 40.19 2.90
1662 2693 2.378038 TGTGGAGCTGCTTCTTTGTTT 58.622 42.857 9.76 0.00 0.00 2.83
1715 2746 2.355756 CCATGGAAAGTTGGCGATGTAG 59.644 50.000 5.56 0.00 0.00 2.74
1816 2847 2.816087 ACCTAGTAGTGTGTGTACGGTG 59.184 50.000 0.00 0.00 0.00 4.94
1817 2848 3.146104 ACCTAGTAGTGTGTGTACGGT 57.854 47.619 0.00 0.00 0.00 4.83
1818 2849 3.624861 CCTACCTAGTAGTGTGTGTACGG 59.375 52.174 0.00 0.00 34.62 4.02
1819 2850 3.624861 CCCTACCTAGTAGTGTGTGTACG 59.375 52.174 0.00 0.00 34.62 3.67
1820 2851 4.593956 ACCCTACCTAGTAGTGTGTGTAC 58.406 47.826 0.00 0.00 34.62 2.90
1821 2852 4.934797 ACCCTACCTAGTAGTGTGTGTA 57.065 45.455 0.00 0.00 34.62 2.90
1822 2853 3.822097 ACCCTACCTAGTAGTGTGTGT 57.178 47.619 0.00 0.00 34.62 3.72
1823 2854 5.948162 TCTAAACCCTACCTAGTAGTGTGTG 59.052 44.000 0.00 0.00 34.62 3.82
1824 2855 6.012157 TCTCTAAACCCTACCTAGTAGTGTGT 60.012 42.308 0.00 0.00 34.62 3.72
1852 2888 9.923786 GAAACCAAACACAATAACCAAATAAAC 57.076 29.630 0.00 0.00 0.00 2.01
1856 2892 6.574350 TCGAAACCAAACACAATAACCAAAT 58.426 32.000 0.00 0.00 0.00 2.32
1867 2903 9.113876 CAACTAAGATTTATCGAAACCAAACAC 57.886 33.333 0.00 0.00 0.00 3.32
1931 2968 4.047822 GTCTCTCACTGCGGAAATATCAG 58.952 47.826 0.00 0.00 0.00 2.90
2020 3058 7.620880 ACACACATGATACTTATAACCACAGT 58.379 34.615 0.00 0.00 0.00 3.55
2418 3493 1.147191 TCAGTAGGTGACCTGACCAGT 59.853 52.381 15.83 0.00 38.63 4.00
2565 3640 3.181448 TGGGGTGTAGAAAAACCACTCTC 60.181 47.826 0.00 0.00 40.77 3.20
2566 3641 2.781174 TGGGGTGTAGAAAAACCACTCT 59.219 45.455 0.00 0.00 40.77 3.24
2567 3642 3.146847 CTGGGGTGTAGAAAAACCACTC 58.853 50.000 0.00 0.00 40.77 3.51
2568 3643 2.751816 GCTGGGGTGTAGAAAAACCACT 60.752 50.000 0.00 0.00 40.77 4.00
2569 3644 1.611977 GCTGGGGTGTAGAAAAACCAC 59.388 52.381 0.00 0.00 40.53 4.16
2570 3645 1.497286 AGCTGGGGTGTAGAAAAACCA 59.503 47.619 0.00 0.00 38.27 3.67
2571 3646 2.160205 GAGCTGGGGTGTAGAAAAACC 58.840 52.381 0.00 0.00 35.59 3.27
2572 3647 1.804748 CGAGCTGGGGTGTAGAAAAAC 59.195 52.381 0.00 0.00 0.00 2.43
2573 3648 1.271163 CCGAGCTGGGGTGTAGAAAAA 60.271 52.381 6.92 0.00 0.00 1.94
2574 3649 0.323629 CCGAGCTGGGGTGTAGAAAA 59.676 55.000 6.92 0.00 0.00 2.29
2575 3650 0.834687 ACCGAGCTGGGGTGTAGAAA 60.835 55.000 19.90 0.00 44.64 2.52
2576 3651 1.229082 ACCGAGCTGGGGTGTAGAA 60.229 57.895 19.90 0.00 44.64 2.10
2577 3652 2.443781 ACCGAGCTGGGGTGTAGA 59.556 61.111 19.90 0.00 44.64 2.59
2590 3665 4.858680 TTTGCGTGGGTGCACCGA 62.859 61.111 29.08 23.75 46.25 4.69
2591 3666 3.417275 TTTTTGCGTGGGTGCACCG 62.417 57.895 29.08 18.77 46.25 4.94
2592 3667 2.496817 TTTTTGCGTGGGTGCACC 59.503 55.556 28.57 28.57 46.25 5.01
2631 3706 9.750125 GTCATTCCTACAAAGTTTCAGAATTTT 57.250 29.630 0.00 0.00 0.00 1.82
2632 3707 8.076178 CGTCATTCCTACAAAGTTTCAGAATTT 58.924 33.333 0.00 0.00 0.00 1.82
2633 3708 7.444183 TCGTCATTCCTACAAAGTTTCAGAATT 59.556 33.333 0.00 0.00 0.00 2.17
2634 3709 6.934645 TCGTCATTCCTACAAAGTTTCAGAAT 59.065 34.615 0.00 0.00 0.00 2.40
2635 3710 6.285224 TCGTCATTCCTACAAAGTTTCAGAA 58.715 36.000 0.00 0.00 0.00 3.02
2636 3711 5.849510 TCGTCATTCCTACAAAGTTTCAGA 58.150 37.500 0.00 0.00 0.00 3.27
2637 3712 6.368791 TGATCGTCATTCCTACAAAGTTTCAG 59.631 38.462 0.00 0.00 0.00 3.02
2638 3713 6.227522 TGATCGTCATTCCTACAAAGTTTCA 58.772 36.000 0.00 0.00 0.00 2.69
2639 3714 6.721571 TGATCGTCATTCCTACAAAGTTTC 57.278 37.500 0.00 0.00 0.00 2.78
2640 3715 6.485313 TGTTGATCGTCATTCCTACAAAGTTT 59.515 34.615 0.00 0.00 0.00 2.66
2641 3716 5.995282 TGTTGATCGTCATTCCTACAAAGTT 59.005 36.000 0.00 0.00 0.00 2.66
2642 3717 5.547465 TGTTGATCGTCATTCCTACAAAGT 58.453 37.500 0.00 0.00 0.00 2.66
2643 3718 6.480524 TTGTTGATCGTCATTCCTACAAAG 57.519 37.500 0.00 0.00 0.00 2.77
2644 3719 6.869315 TTTGTTGATCGTCATTCCTACAAA 57.131 33.333 0.00 0.00 33.39 2.83
2645 3720 6.429692 ACATTTGTTGATCGTCATTCCTACAA 59.570 34.615 0.00 0.00 0.00 2.41
2646 3721 5.937540 ACATTTGTTGATCGTCATTCCTACA 59.062 36.000 0.00 0.00 0.00 2.74
2647 3722 6.422776 ACATTTGTTGATCGTCATTCCTAC 57.577 37.500 0.00 0.00 0.00 3.18
2648 3723 8.611757 CATAACATTTGTTGATCGTCATTCCTA 58.388 33.333 6.21 0.00 38.90 2.94
2649 3724 5.964958 AACATTTGTTGATCGTCATTCCT 57.035 34.783 0.00 0.00 36.80 3.36
2650 3725 6.692681 CCATAACATTTGTTGATCGTCATTCC 59.307 38.462 6.21 0.00 38.90 3.01
2651 3726 6.197096 GCCATAACATTTGTTGATCGTCATTC 59.803 38.462 6.21 0.00 38.90 2.67
2652 3727 6.035843 GCCATAACATTTGTTGATCGTCATT 58.964 36.000 6.21 0.00 38.90 2.57
2653 3728 5.450412 GGCCATAACATTTGTTGATCGTCAT 60.450 40.000 0.00 0.00 38.90 3.06
2654 3729 4.142491 GGCCATAACATTTGTTGATCGTCA 60.142 41.667 0.00 0.00 38.90 4.35
2655 3730 4.142491 TGGCCATAACATTTGTTGATCGTC 60.142 41.667 0.00 0.00 38.90 4.20
2656 3731 3.761218 TGGCCATAACATTTGTTGATCGT 59.239 39.130 0.00 0.00 38.90 3.73
2657 3732 4.104776 GTGGCCATAACATTTGTTGATCG 58.895 43.478 9.72 0.00 38.90 3.69
2658 3733 5.329035 AGTGGCCATAACATTTGTTGATC 57.671 39.130 9.72 0.00 38.90 2.92
2659 3734 5.481105 CAAGTGGCCATAACATTTGTTGAT 58.519 37.500 9.72 0.00 38.90 2.57
2660 3735 4.798924 GCAAGTGGCCATAACATTTGTTGA 60.799 41.667 9.72 0.00 37.71 3.18
2661 3736 3.432933 GCAAGTGGCCATAACATTTGTTG 59.567 43.478 9.72 3.29 37.71 3.33
2662 3737 3.070734 TGCAAGTGGCCATAACATTTGTT 59.929 39.130 9.72 1.08 43.89 2.83
2663 3738 2.632028 TGCAAGTGGCCATAACATTTGT 59.368 40.909 9.72 0.00 43.89 2.83
2664 3739 3.316071 TGCAAGTGGCCATAACATTTG 57.684 42.857 9.72 8.54 43.89 2.32
2665 3740 4.202346 ACTTTGCAAGTGGCCATAACATTT 60.202 37.500 9.72 0.00 43.89 2.32
2666 3741 3.324556 ACTTTGCAAGTGGCCATAACATT 59.675 39.130 9.72 0.00 43.89 2.71
2667 3742 2.899256 ACTTTGCAAGTGGCCATAACAT 59.101 40.909 9.72 0.00 43.89 2.71
2668 3743 2.315176 ACTTTGCAAGTGGCCATAACA 58.685 42.857 9.72 2.10 43.89 2.41
2669 3744 3.385193 AACTTTGCAAGTGGCCATAAC 57.615 42.857 9.72 0.00 41.91 1.89
2670 3745 3.494048 CCAAACTTTGCAAGTGGCCATAA 60.494 43.478 9.72 0.00 41.91 1.90
2671 3746 2.036992 CCAAACTTTGCAAGTGGCCATA 59.963 45.455 9.72 0.00 41.91 2.74
2672 3747 1.202675 CCAAACTTTGCAAGTGGCCAT 60.203 47.619 9.72 0.00 41.91 4.40
2673 3748 0.177604 CCAAACTTTGCAAGTGGCCA 59.822 50.000 0.00 0.00 41.91 5.36
2674 3749 0.177836 ACCAAACTTTGCAAGTGGCC 59.822 50.000 16.20 0.00 41.91 5.36
2675 3750 1.289276 CACCAAACTTTGCAAGTGGC 58.711 50.000 16.20 0.00 41.91 5.01
2676 3751 1.206849 ACCACCAAACTTTGCAAGTGG 59.793 47.619 24.18 24.18 41.91 4.00
2677 3752 2.094286 TGACCACCAAACTTTGCAAGTG 60.094 45.455 0.00 3.17 41.91 3.16
2678 3753 2.175202 TGACCACCAAACTTTGCAAGT 58.825 42.857 0.00 0.00 45.46 3.16
2679 3754 2.957491 TGACCACCAAACTTTGCAAG 57.043 45.000 0.00 0.00 0.00 4.01
2680 3755 3.685139 TTTGACCACCAAACTTTGCAA 57.315 38.095 0.00 0.00 39.65 4.08
2681 3756 3.685139 TTTTGACCACCAAACTTTGCA 57.315 38.095 0.00 0.00 43.82 4.08
2699 3774 6.170506 TGTACATAGCTCCTCGAATGTTTTT 58.829 36.000 3.03 0.00 34.54 1.94
2700 3775 5.730550 TGTACATAGCTCCTCGAATGTTTT 58.269 37.500 3.03 0.00 34.54 2.43
2701 3776 5.127194 TCTGTACATAGCTCCTCGAATGTTT 59.873 40.000 3.03 0.00 34.54 2.83
2702 3777 4.645136 TCTGTACATAGCTCCTCGAATGTT 59.355 41.667 3.03 0.00 34.54 2.71
2703 3778 4.207955 TCTGTACATAGCTCCTCGAATGT 58.792 43.478 0.00 0.00 36.56 2.71
2704 3779 4.837896 TCTGTACATAGCTCCTCGAATG 57.162 45.455 0.00 0.00 0.00 2.67
2705 3780 5.854010 TTTCTGTACATAGCTCCTCGAAT 57.146 39.130 0.00 0.00 0.00 3.34
2706 3781 5.394224 CCTTTTCTGTACATAGCTCCTCGAA 60.394 44.000 0.00 0.00 0.00 3.71
2707 3782 4.098044 CCTTTTCTGTACATAGCTCCTCGA 59.902 45.833 0.00 0.00 0.00 4.04
2708 3783 4.363999 CCTTTTCTGTACATAGCTCCTCG 58.636 47.826 0.00 0.00 0.00 4.63
2709 3784 4.123506 GCCTTTTCTGTACATAGCTCCTC 58.876 47.826 0.00 0.00 0.00 3.71
2710 3785 3.519510 TGCCTTTTCTGTACATAGCTCCT 59.480 43.478 0.00 0.00 0.00 3.69
2711 3786 3.873910 TGCCTTTTCTGTACATAGCTCC 58.126 45.455 0.00 0.00 0.00 4.70
2712 3787 5.880054 TTTGCCTTTTCTGTACATAGCTC 57.120 39.130 0.00 0.00 0.00 4.09
2713 3788 6.434028 TGATTTTGCCTTTTCTGTACATAGCT 59.566 34.615 0.00 0.00 0.00 3.32
2714 3789 6.528072 GTGATTTTGCCTTTTCTGTACATAGC 59.472 38.462 0.00 0.00 0.00 2.97
2715 3790 7.752239 CAGTGATTTTGCCTTTTCTGTACATAG 59.248 37.037 0.00 0.00 0.00 2.23
2716 3791 7.446931 TCAGTGATTTTGCCTTTTCTGTACATA 59.553 33.333 0.00 0.00 0.00 2.29
2717 3792 6.265196 TCAGTGATTTTGCCTTTTCTGTACAT 59.735 34.615 0.00 0.00 0.00 2.29
2718 3793 5.592282 TCAGTGATTTTGCCTTTTCTGTACA 59.408 36.000 0.00 0.00 0.00 2.90
2719 3794 6.072112 TCAGTGATTTTGCCTTTTCTGTAC 57.928 37.500 0.00 0.00 0.00 2.90
2720 3795 6.707440 TTCAGTGATTTTGCCTTTTCTGTA 57.293 33.333 0.00 0.00 0.00 2.74
2721 3796 5.596836 TTCAGTGATTTTGCCTTTTCTGT 57.403 34.783 0.00 0.00 0.00 3.41
2722 3797 7.486802 AATTTCAGTGATTTTGCCTTTTCTG 57.513 32.000 0.00 0.00 0.00 3.02
2723 3798 9.045223 GTAAATTTCAGTGATTTTGCCTTTTCT 57.955 29.630 10.36 0.00 0.00 2.52
2724 3799 9.045223 AGTAAATTTCAGTGATTTTGCCTTTTC 57.955 29.630 10.36 0.00 0.00 2.29
2725 3800 8.962884 AGTAAATTTCAGTGATTTTGCCTTTT 57.037 26.923 10.36 0.00 0.00 2.27
2726 3801 8.203485 TGAGTAAATTTCAGTGATTTTGCCTTT 58.797 29.630 10.36 0.57 0.00 3.11
2727 3802 7.725251 TGAGTAAATTTCAGTGATTTTGCCTT 58.275 30.769 10.36 0.00 0.00 4.35
2728 3803 7.288810 TGAGTAAATTTCAGTGATTTTGCCT 57.711 32.000 10.36 7.07 0.00 4.75
2729 3804 7.945033 TTGAGTAAATTTCAGTGATTTTGCC 57.055 32.000 10.36 5.76 0.00 4.52
2730 3805 9.636965 GTTTTGAGTAAATTTCAGTGATTTTGC 57.363 29.630 10.36 9.29 0.00 3.68
2731 3806 9.833894 CGTTTTGAGTAAATTTCAGTGATTTTG 57.166 29.630 10.36 0.00 0.00 2.44
2732 3807 9.581099 ACGTTTTGAGTAAATTTCAGTGATTTT 57.419 25.926 0.00 0.27 0.00 1.82
2735 3810 9.878599 CTTACGTTTTGAGTAAATTTCAGTGAT 57.121 29.630 0.00 0.00 34.18 3.06
2736 3811 8.885722 ACTTACGTTTTGAGTAAATTTCAGTGA 58.114 29.630 0.00 0.00 34.18 3.41
2740 3815 9.919348 GTGTACTTACGTTTTGAGTAAATTTCA 57.081 29.630 0.00 0.00 34.18 2.69
2742 3817 9.925268 CAGTGTACTTACGTTTTGAGTAAATTT 57.075 29.630 0.00 0.00 34.18 1.82
2743 3818 9.101655 ACAGTGTACTTACGTTTTGAGTAAATT 57.898 29.630 0.00 0.00 34.18 1.82
2744 3819 8.652810 ACAGTGTACTTACGTTTTGAGTAAAT 57.347 30.769 0.00 0.00 34.18 1.40
2745 3820 8.477984 AACAGTGTACTTACGTTTTGAGTAAA 57.522 30.769 0.00 0.00 34.18 2.01
2746 3821 8.382130 CAAACAGTGTACTTACGTTTTGAGTAA 58.618 33.333 0.00 0.00 30.67 2.24
2747 3822 7.758980 TCAAACAGTGTACTTACGTTTTGAGTA 59.241 33.333 0.00 0.00 30.67 2.59
2748 3823 6.591062 TCAAACAGTGTACTTACGTTTTGAGT 59.409 34.615 0.00 0.00 30.67 3.41
2749 3824 6.996106 TCAAACAGTGTACTTACGTTTTGAG 58.004 36.000 0.00 0.00 30.67 3.02
2750 3825 6.455913 GCTCAAACAGTGTACTTACGTTTTGA 60.456 38.462 0.00 0.00 30.67 2.69
2751 3826 5.675444 GCTCAAACAGTGTACTTACGTTTTG 59.325 40.000 0.00 0.00 30.67 2.44
2752 3827 5.352016 TGCTCAAACAGTGTACTTACGTTTT 59.648 36.000 0.00 0.00 30.67 2.43
2753 3828 4.871557 TGCTCAAACAGTGTACTTACGTTT 59.128 37.500 0.00 0.00 32.07 3.60
2754 3829 4.435425 TGCTCAAACAGTGTACTTACGTT 58.565 39.130 0.00 0.00 0.00 3.99
2755 3830 4.049186 CTGCTCAAACAGTGTACTTACGT 58.951 43.478 0.00 0.00 32.78 3.57
2756 3831 4.295870 TCTGCTCAAACAGTGTACTTACG 58.704 43.478 0.00 0.00 38.84 3.18
2757 3832 6.787085 AATCTGCTCAAACAGTGTACTTAC 57.213 37.500 0.00 0.00 38.84 2.34
2758 3833 7.282224 ACAAAATCTGCTCAAACAGTGTACTTA 59.718 33.333 0.00 0.00 38.84 2.24
2759 3834 6.095440 ACAAAATCTGCTCAAACAGTGTACTT 59.905 34.615 0.00 0.00 38.84 2.24
2760 3835 5.590259 ACAAAATCTGCTCAAACAGTGTACT 59.410 36.000 0.00 0.00 38.84 2.73
2761 3836 5.821204 ACAAAATCTGCTCAAACAGTGTAC 58.179 37.500 0.00 0.00 38.84 2.90
2762 3837 7.561021 TTACAAAATCTGCTCAAACAGTGTA 57.439 32.000 0.00 0.00 38.84 2.90
2763 3838 4.989279 ACAAAATCTGCTCAAACAGTGT 57.011 36.364 0.00 0.00 38.84 3.55
2764 3839 7.935338 AATTACAAAATCTGCTCAAACAGTG 57.065 32.000 0.00 0.00 38.84 3.66
2765 3840 8.819974 CAAAATTACAAAATCTGCTCAAACAGT 58.180 29.630 0.00 0.00 38.84 3.55
2766 3841 8.819974 ACAAAATTACAAAATCTGCTCAAACAG 58.180 29.630 0.00 0.00 39.12 3.16
2767 3842 8.715191 ACAAAATTACAAAATCTGCTCAAACA 57.285 26.923 0.00 0.00 0.00 2.83
2795 3870 3.469008 TCGAGGAGCTCTGTTCAAAAA 57.531 42.857 14.64 0.00 0.00 1.94
2796 3871 3.469008 TTCGAGGAGCTCTGTTCAAAA 57.531 42.857 14.64 4.39 0.00 2.44
2797 3872 3.244215 ACATTCGAGGAGCTCTGTTCAAA 60.244 43.478 14.64 1.69 0.00 2.69
2798 3873 2.300152 ACATTCGAGGAGCTCTGTTCAA 59.700 45.455 14.64 1.06 0.00 2.69
2799 3874 1.895798 ACATTCGAGGAGCTCTGTTCA 59.104 47.619 14.64 0.00 0.00 3.18
2800 3875 2.663826 ACATTCGAGGAGCTCTGTTC 57.336 50.000 14.64 8.35 0.00 3.18
2801 3876 4.744795 ATAACATTCGAGGAGCTCTGTT 57.255 40.909 14.64 16.45 33.29 3.16
2802 3877 4.744795 AATAACATTCGAGGAGCTCTGT 57.255 40.909 14.64 5.92 0.00 3.41
2803 3878 6.018669 GGTAAAATAACATTCGAGGAGCTCTG 60.019 42.308 14.64 5.21 0.00 3.35
2804 3879 6.049790 GGTAAAATAACATTCGAGGAGCTCT 58.950 40.000 14.64 0.00 0.00 4.09
2805 3880 5.815740 TGGTAAAATAACATTCGAGGAGCTC 59.184 40.000 4.71 4.71 0.00 4.09
2806 3881 5.741011 TGGTAAAATAACATTCGAGGAGCT 58.259 37.500 0.00 0.00 0.00 4.09
2807 3882 6.260050 TGATGGTAAAATAACATTCGAGGAGC 59.740 38.462 0.00 0.00 35.93 4.70
2808 3883 7.786178 TGATGGTAAAATAACATTCGAGGAG 57.214 36.000 0.00 0.00 35.93 3.69
2809 3884 8.455682 GTTTGATGGTAAAATAACATTCGAGGA 58.544 33.333 0.00 0.00 35.93 3.71
2810 3885 8.458843 AGTTTGATGGTAAAATAACATTCGAGG 58.541 33.333 0.00 0.00 35.93 4.63
2811 3886 9.840427 AAGTTTGATGGTAAAATAACATTCGAG 57.160 29.630 0.00 0.00 35.93 4.04
2815 3890 9.553064 TGCAAAGTTTGATGGTAAAATAACATT 57.447 25.926 19.82 0.00 35.93 2.71
2816 3891 9.553064 TTGCAAAGTTTGATGGTAAAATAACAT 57.447 25.926 19.82 0.00 39.19 2.71
2817 3892 8.948631 TTGCAAAGTTTGATGGTAAAATAACA 57.051 26.923 19.82 0.07 0.00 2.41
2835 3910 7.675897 AACAAATGTTATGGGCACTTGCAAAG 61.676 38.462 0.00 0.00 42.86 2.77
2836 3911 4.063689 CAAATGTTATGGGCACTTGCAAA 58.936 39.130 0.00 0.00 44.36 3.68
2837 3912 3.070734 ACAAATGTTATGGGCACTTGCAA 59.929 39.130 0.00 0.00 44.36 4.08
2838 3913 2.632028 ACAAATGTTATGGGCACTTGCA 59.368 40.909 3.15 0.00 44.36 4.08
2839 3914 3.317603 ACAAATGTTATGGGCACTTGC 57.682 42.857 0.00 0.00 41.14 4.01
2840 3915 4.880759 TCAACAAATGTTATGGGCACTTG 58.119 39.130 0.00 0.00 36.32 3.16
2841 3916 5.245751 TCATCAACAAATGTTATGGGCACTT 59.754 36.000 0.00 0.00 36.32 3.16
2842 3917 4.771577 TCATCAACAAATGTTATGGGCACT 59.228 37.500 0.00 0.00 36.32 4.40
2843 3918 5.070770 TCATCAACAAATGTTATGGGCAC 57.929 39.130 0.00 0.00 36.32 5.01
2844 3919 5.421374 TGATCATCAACAAATGTTATGGGCA 59.579 36.000 0.00 4.06 36.32 5.36
2845 3920 5.904941 TGATCATCAACAAATGTTATGGGC 58.095 37.500 0.00 2.11 36.32 5.36
2846 3921 7.654520 GGAATGATCATCAACAAATGTTATGGG 59.345 37.037 9.06 0.00 36.32 4.00
2847 3922 8.418662 AGGAATGATCATCAACAAATGTTATGG 58.581 33.333 9.06 0.00 36.32 2.74
2850 3925 9.460019 TGTAGGAATGATCATCAACAAATGTTA 57.540 29.630 9.06 0.00 36.32 2.41
2851 3926 8.352137 TGTAGGAATGATCATCAACAAATGTT 57.648 30.769 9.06 0.00 39.12 2.71
2852 3927 7.943079 TGTAGGAATGATCATCAACAAATGT 57.057 32.000 9.06 0.00 0.00 2.71
2853 3928 9.297586 CTTTGTAGGAATGATCATCAACAAATG 57.702 33.333 23.58 17.84 35.51 2.32
2854 3929 9.028284 ACTTTGTAGGAATGATCATCAACAAAT 57.972 29.630 23.58 16.52 35.51 2.32
2855 3930 8.408043 ACTTTGTAGGAATGATCATCAACAAA 57.592 30.769 22.75 22.75 35.14 2.83
2856 3931 8.408043 AACTTTGTAGGAATGATCATCAACAA 57.592 30.769 9.06 13.30 0.00 2.83
2857 3932 8.408043 AAACTTTGTAGGAATGATCATCAACA 57.592 30.769 9.06 8.25 0.00 3.33
2858 3933 8.514594 TGAAACTTTGTAGGAATGATCATCAAC 58.485 33.333 9.06 5.80 0.00 3.18
2859 3934 8.634335 TGAAACTTTGTAGGAATGATCATCAA 57.366 30.769 9.06 5.69 0.00 2.57
2860 3935 8.102676 TCTGAAACTTTGTAGGAATGATCATCA 58.897 33.333 9.06 0.00 0.00 3.07
2861 3936 8.498054 TCTGAAACTTTGTAGGAATGATCATC 57.502 34.615 9.06 2.77 0.00 2.92
2862 3937 8.868522 TTCTGAAACTTTGTAGGAATGATCAT 57.131 30.769 1.18 1.18 0.00 2.45
2863 3938 8.868522 ATTCTGAAACTTTGTAGGAATGATCA 57.131 30.769 0.00 0.00 0.00 2.92
2896 3971 8.707839 CCACGCAAGAAAACATAATAAAACATT 58.292 29.630 0.00 0.00 43.62 2.71
2897 3972 7.330700 CCCACGCAAGAAAACATAATAAAACAT 59.669 33.333 0.00 0.00 43.62 2.71
2898 3973 6.642950 CCCACGCAAGAAAACATAATAAAACA 59.357 34.615 0.00 0.00 43.62 2.83
2899 3974 6.643360 ACCCACGCAAGAAAACATAATAAAAC 59.357 34.615 0.00 0.00 43.62 2.43
2900 3975 6.642950 CACCCACGCAAGAAAACATAATAAAA 59.357 34.615 0.00 0.00 43.62 1.52
2901 3976 6.153067 CACCCACGCAAGAAAACATAATAAA 58.847 36.000 0.00 0.00 43.62 1.40
2902 3977 5.704888 CACCCACGCAAGAAAACATAATAA 58.295 37.500 0.00 0.00 43.62 1.40
2903 3978 4.380023 GCACCCACGCAAGAAAACATAATA 60.380 41.667 0.00 0.00 43.62 0.98
2904 3979 3.613910 GCACCCACGCAAGAAAACATAAT 60.614 43.478 0.00 0.00 43.62 1.28
2905 3980 2.287909 GCACCCACGCAAGAAAACATAA 60.288 45.455 0.00 0.00 43.62 1.90
2906 3981 1.268352 GCACCCACGCAAGAAAACATA 59.732 47.619 0.00 0.00 43.62 2.29
2907 3982 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.000 0.00 0.00 43.62 2.71
2908 3983 1.315981 TGCACCCACGCAAGAAAACA 61.316 50.000 0.00 0.00 39.45 2.83
2909 3984 0.869880 GTGCACCCACGCAAGAAAAC 60.870 55.000 5.22 0.00 45.14 2.43
2910 3985 1.435515 GTGCACCCACGCAAGAAAA 59.564 52.632 5.22 0.00 45.14 2.29
2911 3986 2.485795 GGTGCACCCACGCAAGAAA 61.486 57.895 26.31 0.00 45.14 2.52
2912 3987 2.904866 GGTGCACCCACGCAAGAA 60.905 61.111 26.31 0.00 45.14 2.52
2922 3997 4.643387 AACCCAGCTCGGTGCACC 62.643 66.667 26.78 26.78 45.94 5.01
2923 3998 3.050275 GAACCCAGCTCGGTGCAC 61.050 66.667 8.80 8.80 45.94 4.57
2924 3999 3.535629 CTGAACCCAGCTCGGTGCA 62.536 63.158 11.17 11.17 45.94 4.57
2925 4000 2.743928 CTGAACCCAGCTCGGTGC 60.744 66.667 2.86 1.64 43.29 5.01
2933 4008 0.111253 AAAGGAGTGGCTGAACCCAG 59.889 55.000 0.00 0.00 43.22 4.45
2934 4009 0.110486 GAAAGGAGTGGCTGAACCCA 59.890 55.000 0.00 0.00 37.83 4.51
2935 4010 0.609406 GGAAAGGAGTGGCTGAACCC 60.609 60.000 0.00 0.00 37.83 4.11
2936 4011 0.609406 GGGAAAGGAGTGGCTGAACC 60.609 60.000 0.00 0.00 39.84 3.62
2937 4012 0.402121 AGGGAAAGGAGTGGCTGAAC 59.598 55.000 0.00 0.00 0.00 3.18
2938 4013 2.038863 TAGGGAAAGGAGTGGCTGAA 57.961 50.000 0.00 0.00 0.00 3.02
2939 4014 2.038863 TTAGGGAAAGGAGTGGCTGA 57.961 50.000 0.00 0.00 0.00 4.26
2940 4015 2.305927 TCTTTAGGGAAAGGAGTGGCTG 59.694 50.000 0.00 0.00 42.13 4.85
2941 4016 2.632537 TCTTTAGGGAAAGGAGTGGCT 58.367 47.619 0.00 0.00 42.13 4.75
2942 4017 3.434940 TTCTTTAGGGAAAGGAGTGGC 57.565 47.619 0.00 0.00 42.13 5.01
2943 4018 5.179452 TCATTCTTTAGGGAAAGGAGTGG 57.821 43.478 0.00 0.00 42.13 4.00
2944 4019 6.003950 TGTTCATTCTTTAGGGAAAGGAGTG 58.996 40.000 0.00 0.00 42.13 3.51
2945 4020 6.200878 TGTTCATTCTTTAGGGAAAGGAGT 57.799 37.500 0.00 0.00 42.13 3.85
2946 4021 7.709149 AATGTTCATTCTTTAGGGAAAGGAG 57.291 36.000 0.00 0.00 42.13 3.69
2947 4022 8.491045 AAAATGTTCATTCTTTAGGGAAAGGA 57.509 30.769 0.00 0.00 42.13 3.36
2948 4023 8.992073 CAAAAATGTTCATTCTTTAGGGAAAGG 58.008 33.333 0.00 0.00 42.13 3.11
2949 4024 8.498358 GCAAAAATGTTCATTCTTTAGGGAAAG 58.502 33.333 0.00 0.00 43.05 2.62
2950 4025 8.210265 AGCAAAAATGTTCATTCTTTAGGGAAA 58.790 29.630 0.00 0.00 0.00 3.13
2951 4026 7.656948 CAGCAAAAATGTTCATTCTTTAGGGAA 59.343 33.333 0.00 0.00 0.00 3.97
2952 4027 7.153985 CAGCAAAAATGTTCATTCTTTAGGGA 58.846 34.615 0.00 0.00 0.00 4.20
2953 4028 6.930722 ACAGCAAAAATGTTCATTCTTTAGGG 59.069 34.615 0.00 0.00 0.00 3.53
2954 4029 7.951530 ACAGCAAAAATGTTCATTCTTTAGG 57.048 32.000 0.00 0.00 0.00 2.69
3085 4162 5.570320 ACCTAAGAACACAAAGGCACATAT 58.430 37.500 0.00 0.00 31.98 1.78
3503 4732 6.069963 AGGTAGAAATATGCCAACTTCTGTCT 60.070 38.462 0.00 0.00 30.90 3.41
3529 4758 2.360852 ATGGTGCTGGCAGCTGAC 60.361 61.111 36.50 27.35 42.97 3.51
3693 4922 5.834169 TGTTTTGGGAGAAAAATAACCGAC 58.166 37.500 0.00 0.00 32.02 4.79
3708 4938 2.429250 AGAAACCCGACTTTGTTTTGGG 59.571 45.455 0.00 0.00 45.70 4.12
3710 4940 5.689961 CCATAAGAAACCCGACTTTGTTTTG 59.310 40.000 0.00 0.00 34.97 2.44
3721 4951 6.170846 ACTAGGATAACCATAAGAAACCCG 57.829 41.667 0.00 0.00 38.94 5.28
3734 4964 4.935808 CCACCTGTGACAAACTAGGATAAC 59.064 45.833 0.00 0.00 33.63 1.89
3763 4993 5.956642 GAGTAGTACTCAGTTTCCTCTTGG 58.043 45.833 22.85 0.00 44.45 3.61
3910 5141 1.021390 CCATGAACACGAGACTGGGC 61.021 60.000 0.00 0.00 0.00 5.36
3912 5143 2.029020 TCTTCCATGAACACGAGACTGG 60.029 50.000 0.00 0.00 0.00 4.00
4107 5339 1.002142 GGTCCAACAAAGTACAACGCC 60.002 52.381 0.00 0.00 0.00 5.68
4184 5416 3.470567 GACGACCGCAAGTGCTCG 61.471 66.667 11.92 11.92 39.32 5.03
4261 5680 6.430451 AGCTAAGTAATAAATCAACGCATGC 58.570 36.000 7.91 7.91 0.00 4.06
4311 5730 4.241590 TGGAGTTTGTCAATTGCATCAC 57.758 40.909 0.00 3.25 0.00 3.06
4323 5742 4.994217 CCACAACTTTTGTTTGGAGTTTGT 59.006 37.500 0.00 0.00 43.23 2.83
4335 5754 4.445452 AGCTATGATGCCACAACTTTTG 57.555 40.909 0.00 0.00 0.00 2.44
4340 5759 4.963276 TTGTTAGCTATGATGCCACAAC 57.037 40.909 0.00 0.00 34.04 3.32
4342 5761 5.709631 TCTTTTTGTTAGCTATGATGCCACA 59.290 36.000 0.00 0.00 0.00 4.17
4344 5763 5.945784 ACTCTTTTTGTTAGCTATGATGCCA 59.054 36.000 0.00 0.00 0.00 4.92
4345 5764 6.442513 ACTCTTTTTGTTAGCTATGATGCC 57.557 37.500 0.00 0.00 0.00 4.40
4367 5788 6.090129 TCTGCAACAAAGTAGTCAACAAAAC 58.910 36.000 0.00 0.00 0.00 2.43
4414 5837 1.000827 ACGAGCAGAGAGACACTGTTG 60.001 52.381 0.00 0.00 37.64 3.33
4443 5866 5.604231 TCTGGTATAGTCAAAGAGCCATCAT 59.396 40.000 0.00 0.00 0.00 2.45
4454 5877 4.447908 CCTCCTAGCCTCTGGTATAGTCAA 60.448 50.000 0.00 0.00 0.00 3.18
4459 5882 3.727923 ACTTCCTCCTAGCCTCTGGTATA 59.272 47.826 0.00 0.00 0.00 1.47
4780 6203 0.804364 GCATCTTCACCAATGACGCA 59.196 50.000 0.00 0.00 33.38 5.24
4782 6205 4.779987 CATATGCATCTTCACCAATGACG 58.220 43.478 0.19 0.00 33.38 4.35
4824 6247 7.707035 CGATATTTAGGCTTCGATATTTAGGCT 59.293 37.037 13.79 13.79 45.43 4.58
4825 6248 7.705325 TCGATATTTAGGCTTCGATATTTAGGC 59.295 37.037 4.24 0.00 35.85 3.93
4826 6249 9.582431 TTCGATATTTAGGCTTCGATATTTAGG 57.418 33.333 8.85 0.00 39.99 2.69
4828 6251 9.582431 CCTTCGATATTTAGGCTTCGATATTTA 57.418 33.333 8.85 0.00 39.99 1.40
4829 6252 8.480643 CCTTCGATATTTAGGCTTCGATATTT 57.519 34.615 8.85 0.00 39.99 1.40
5073 6510 7.602265 ACATTACTCCACCATAAAATTTTGCAC 59.398 33.333 13.76 0.00 0.00 4.57
5117 6554 8.392612 AGTCTTTTGCAGATTGATTTGTTTTTG 58.607 29.630 0.00 0.00 32.60 2.44
5145 6582 4.252878 CGCCCCAAAAATGCTTTAGAAAT 58.747 39.130 0.00 0.00 0.00 2.17
5149 6586 1.066929 AGCGCCCCAAAAATGCTTTAG 60.067 47.619 2.29 0.00 30.27 1.85
5278 6728 9.376075 CATGTGTGGCATAAATGGTAAATTAAA 57.624 29.630 6.51 0.00 35.74 1.52
5280 6730 7.978414 CACATGTGTGGCATAAATGGTAAATTA 59.022 33.333 18.03 0.00 42.10 1.40
5282 6732 6.339730 CACATGTGTGGCATAAATGGTAAAT 58.660 36.000 18.03 0.00 42.10 1.40
5289 6739 3.787785 CATGCACATGTGTGGCATAAAT 58.212 40.909 26.01 1.46 45.72 1.40
5314 6764 1.174783 GTGTGCTTCTAGTCCCGAGA 58.825 55.000 0.00 0.00 0.00 4.04
5424 6881 5.943416 TGCATATTTATTTACTCCATCCCCG 59.057 40.000 0.00 0.00 0.00 5.73
5465 6922 5.119694 TGTGTAGCACGCATATTTTCCATA 58.880 37.500 0.00 0.00 37.14 2.74
5470 6927 3.944650 TCCATGTGTAGCACGCATATTTT 59.055 39.130 12.77 0.00 46.51 1.82
5477 6934 1.086696 ATGTTCCATGTGTAGCACGC 58.913 50.000 0.00 0.00 37.14 5.34
5534 6991 4.314440 TCTTGTGCGGCGAGGCTT 62.314 61.111 12.98 0.00 0.00 4.35
5546 7003 4.379243 CGCGGAGGGCACTCTTGT 62.379 66.667 17.22 0.00 43.46 3.16
5621 7078 4.265056 GGTTGGGGTGAGGCGTGT 62.265 66.667 0.00 0.00 0.00 4.49
5673 7131 3.681835 GGTGGTCTCGGCGTGACT 61.682 66.667 32.49 0.00 35.04 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.