Multiple sequence alignment - TraesCS2D01G421600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G421600 chr2D 100.000 4331 0 0 1 4331 535097904 535102234 0.000000e+00 7998.0
1 TraesCS2D01G421600 chr2D 100.000 48 0 0 464 511 535098321 535098368 5.970000e-14 89.8
2 TraesCS2D01G421600 chr2D 100.000 48 0 0 418 465 535098367 535098414 5.970000e-14 89.8
3 TraesCS2D01G421600 chr2A 94.757 3395 142 18 847 4227 678363174 678366546 0.000000e+00 5251.0
4 TraesCS2D01G421600 chr2A 97.645 467 9 2 1 465 678362040 678362506 0.000000e+00 800.0
5 TraesCS2D01G421600 chr2A 90.909 385 13 5 464 826 678362459 678362843 8.360000e-137 497.0
6 TraesCS2D01G421600 chr2A 99.010 101 1 0 4231 4331 678366583 678366683 9.570000e-42 182.0
7 TraesCS2D01G421600 chr2B 95.232 1678 71 3 927 2597 636467188 636468863 0.000000e+00 2647.0
8 TraesCS2D01G421600 chr2B 92.659 1444 74 9 2585 4019 636470288 636471708 0.000000e+00 2050.0
9 TraesCS2D01G421600 chr2B 97.854 466 8 2 1 465 636462849 636463313 0.000000e+00 804.0
10 TraesCS2D01G421600 chr2B 96.186 472 13 4 464 932 636463267 636463736 0.000000e+00 767.0
11 TraesCS2D01G421600 chr2B 91.509 212 16 1 4018 4227 636471749 636471960 1.520000e-74 291.0
12 TraesCS2D01G421600 chr2B 100.000 28 0 0 1006 1033 231633284 231633257 8.000000e-03 52.8
13 TraesCS2D01G421600 chr3B 74.175 2273 497 62 1104 3338 690442843 690445063 0.000000e+00 863.0
14 TraesCS2D01G421600 chr3B 72.780 1554 380 39 1102 2638 43527644 43526117 1.810000e-133 486.0
15 TraesCS2D01G421600 chr3D 81.921 531 92 3 2746 3272 523562766 523563296 3.070000e-121 446.0
16 TraesCS2D01G421600 chr6B 96.875 32 0 1 1002 1033 585997474 585997504 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G421600 chr2D 535097904 535102234 4330 False 2725.866667 7998 100.00000 1 4331 3 chr2D.!!$F1 4330
1 TraesCS2D01G421600 chr2A 678362040 678366683 4643 False 1682.500000 5251 95.58025 1 4331 4 chr2A.!!$F1 4330
2 TraesCS2D01G421600 chr2B 636462849 636471960 9111 False 1311.800000 2647 94.68800 1 4227 5 chr2B.!!$F1 4226
3 TraesCS2D01G421600 chr3B 690442843 690445063 2220 False 863.000000 863 74.17500 1104 3338 1 chr3B.!!$F1 2234
4 TraesCS2D01G421600 chr3B 43526117 43527644 1527 True 486.000000 486 72.78000 1102 2638 1 chr3B.!!$R1 1536
5 TraesCS2D01G421600 chr3D 523562766 523563296 530 False 446.000000 446 81.92100 2746 3272 1 chr3D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 1205 1.075536 ACAAATCCCCTGTCCTTCACC 59.924 52.381 0.0 0.0 0.00 4.02 F
1678 5482 0.459411 GAGACTGAAGAAGCTCCGGC 60.459 60.000 0.0 0.0 39.06 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 5516 1.274703 ACCAATCTCCAGCGGGATGT 61.275 55.0 5.89 0.0 43.91 3.06 R
3473 8729 0.464554 GCCCACATTCCTCAGCCTAC 60.465 60.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.411517 CCACCGAGCCCCAATCCT 61.412 66.667 0.00 0.00 0.00 3.24
148 149 1.112113 TAGAGCGGGAAGGTGACATC 58.888 55.000 0.00 0.00 0.00 3.06
461 464 2.039879 TGGGTTAGGAAAACTCTGCTCC 59.960 50.000 0.00 0.00 0.00 4.70
462 465 2.618302 GGGTTAGGAAAACTCTGCTCCC 60.618 54.545 0.00 0.00 0.00 4.30
463 466 2.306219 GGTTAGGAAAACTCTGCTCCCT 59.694 50.000 0.00 0.00 0.00 4.20
464 467 3.518303 GGTTAGGAAAACTCTGCTCCCTA 59.482 47.826 0.00 0.00 0.00 3.53
465 468 4.505808 GTTAGGAAAACTCTGCTCCCTAC 58.494 47.826 0.00 0.00 0.00 3.18
466 469 2.621070 AGGAAAACTCTGCTCCCTACA 58.379 47.619 0.00 0.00 0.00 2.74
467 470 2.979678 AGGAAAACTCTGCTCCCTACAA 59.020 45.455 0.00 0.00 0.00 2.41
468 471 3.394606 AGGAAAACTCTGCTCCCTACAAA 59.605 43.478 0.00 0.00 0.00 2.83
469 472 4.141251 AGGAAAACTCTGCTCCCTACAAAA 60.141 41.667 0.00 0.00 0.00 2.44
470 473 4.216472 GGAAAACTCTGCTCCCTACAAAAG 59.784 45.833 0.00 0.00 0.00 2.27
471 474 4.439253 AAACTCTGCTCCCTACAAAAGT 57.561 40.909 0.00 0.00 0.00 2.66
472 475 4.439253 AACTCTGCTCCCTACAAAAGTT 57.561 40.909 0.00 0.00 0.00 2.66
473 476 3.744660 ACTCTGCTCCCTACAAAAGTTG 58.255 45.455 0.00 0.00 0.00 3.16
475 478 4.347000 ACTCTGCTCCCTACAAAAGTTGTA 59.653 41.667 1.22 1.22 43.27 2.41
489 492 7.661040 ACAAAAGTTGTAGATTTTCTCATGGG 58.339 34.615 0.00 0.00 43.27 4.00
490 493 7.287696 ACAAAAGTTGTAGATTTTCTCATGGGT 59.712 33.333 0.00 0.00 43.27 4.51
491 494 7.839680 AAAGTTGTAGATTTTCTCATGGGTT 57.160 32.000 0.00 0.00 0.00 4.11
492 495 8.934023 AAAGTTGTAGATTTTCTCATGGGTTA 57.066 30.769 0.00 0.00 0.00 2.85
493 496 8.567285 AAGTTGTAGATTTTCTCATGGGTTAG 57.433 34.615 0.00 0.00 0.00 2.34
494 497 7.112779 AGTTGTAGATTTTCTCATGGGTTAGG 58.887 38.462 0.00 0.00 0.00 2.69
495 498 6.884472 TGTAGATTTTCTCATGGGTTAGGA 57.116 37.500 0.00 0.00 0.00 2.94
496 499 7.265599 TGTAGATTTTCTCATGGGTTAGGAA 57.734 36.000 0.00 0.00 0.00 3.36
497 500 7.695055 TGTAGATTTTCTCATGGGTTAGGAAA 58.305 34.615 0.00 0.00 0.00 3.13
498 501 8.167392 TGTAGATTTTCTCATGGGTTAGGAAAA 58.833 33.333 0.00 0.00 39.23 2.29
499 502 7.468141 AGATTTTCTCATGGGTTAGGAAAAC 57.532 36.000 0.00 0.00 38.25 2.43
500 503 7.241628 AGATTTTCTCATGGGTTAGGAAAACT 58.758 34.615 0.00 0.00 38.25 2.66
501 504 6.894339 TTTTCTCATGGGTTAGGAAAACTC 57.106 37.500 0.00 0.00 33.04 3.01
502 505 5.843019 TTCTCATGGGTTAGGAAAACTCT 57.157 39.130 0.00 0.00 0.00 3.24
503 506 5.165961 TCTCATGGGTTAGGAAAACTCTG 57.834 43.478 0.00 0.00 0.00 3.35
504 507 3.686016 TCATGGGTTAGGAAAACTCTGC 58.314 45.455 0.00 0.00 0.00 4.26
505 508 3.330701 TCATGGGTTAGGAAAACTCTGCT 59.669 43.478 0.00 0.00 0.00 4.24
506 509 3.418684 TGGGTTAGGAAAACTCTGCTC 57.581 47.619 0.00 0.00 0.00 4.26
805 830 1.898472 ACCTGGAGAGTCATGTGTCAG 59.102 52.381 0.00 0.00 0.00 3.51
861 1205 1.075536 ACAAATCCCCTGTCCTTCACC 59.924 52.381 0.00 0.00 0.00 4.02
892 1236 5.829924 ACCTTCTTATAATCCTTGTGCCATG 59.170 40.000 0.00 0.00 0.00 3.66
961 4762 7.607991 ACAAAGTATCACCAAGATAAGGACTTG 59.392 37.037 0.00 0.00 40.76 3.16
1004 4805 7.519970 CGTTCAGTAAATAACTATCCCAATGGC 60.520 40.741 0.00 0.00 35.76 4.40
1039 4840 3.459063 GGCCGGCCGACTACTTCT 61.459 66.667 33.60 0.00 0.00 2.85
1121 4922 3.764434 CACTTCCTACTCTCTTGCACCTA 59.236 47.826 0.00 0.00 0.00 3.08
1138 4939 2.245028 ACCTATCTCCTACTCTGTGCCA 59.755 50.000 0.00 0.00 0.00 4.92
1200 5004 1.948144 GCTCTTCTGAGTTGGAAGGCC 60.948 57.143 0.00 0.00 42.13 5.19
1203 5007 1.072965 CTTCTGAGTTGGAAGGCCAGT 59.927 52.381 5.01 0.00 46.91 4.00
1357 5161 2.121291 TGGCACACTTGACAAGTTCA 57.879 45.000 18.27 11.20 38.06 3.18
1435 5239 5.165923 TGGCAACATTCCAGAAGGGATCA 62.166 47.826 0.00 0.00 45.04 2.92
1567 5371 0.893270 TTTGGGTCTTGATGGTGCGG 60.893 55.000 0.00 0.00 0.00 5.69
1678 5482 0.459411 GAGACTGAAGAAGCTCCGGC 60.459 60.000 0.00 0.00 39.06 6.13
1712 5516 0.546122 AACAACAGTCTGACAGGGCA 59.454 50.000 10.88 0.00 0.00 5.36
2008 5819 1.468520 GATTTACAAGCCTTCGCAGCA 59.531 47.619 0.00 0.00 37.52 4.41
2091 5902 3.826157 CAGACCTAATGGCTTGTTTTGGA 59.174 43.478 0.00 0.00 36.63 3.53
2116 5927 1.971695 CCAGAACAACTTCGGGGGC 60.972 63.158 0.00 0.00 37.92 5.80
2211 6022 4.957327 ACTAGGTTATCACTTCTGGACCTC 59.043 45.833 0.00 0.00 38.40 3.85
2238 6049 5.450818 ACAATGCCTTAAATGGAGACCTA 57.549 39.130 0.00 0.00 0.00 3.08
2457 6268 3.633986 GAGGCAATAATTTCTCAGGTGGG 59.366 47.826 0.00 0.00 0.00 4.61
3117 8368 1.843368 ACCCATCTGCATCAAACCAG 58.157 50.000 0.00 0.00 0.00 4.00
3123 8374 4.439700 CCATCTGCATCAAACCAGAATGAC 60.440 45.833 0.00 0.00 41.04 3.06
3128 8379 4.523558 TGCATCAAACCAGAATGACATGAA 59.476 37.500 0.00 0.00 39.69 2.57
3129 8380 5.100259 GCATCAAACCAGAATGACATGAAG 58.900 41.667 0.00 0.00 39.69 3.02
3225 8479 0.035176 GGGGCATGCTCTTTTGCAAA 59.965 50.000 18.99 8.05 46.61 3.68
3238 8492 1.538047 TTGCAAAGAGACATGGAGGC 58.462 50.000 0.00 0.00 0.00 4.70
3239 8493 0.401356 TGCAAAGAGACATGGAGGCA 59.599 50.000 0.00 0.00 0.00 4.75
3385 8641 7.286775 TCATTGCCTGTTATATTTTCCCTTACC 59.713 37.037 0.00 0.00 0.00 2.85
3394 8650 9.201127 GTTATATTTTCCCTTACCGATCTACAC 57.799 37.037 0.00 0.00 0.00 2.90
3423 8679 9.226606 CTTAGGTTGTAATTTCTTACATGACCA 57.773 33.333 16.11 5.49 44.31 4.02
3445 8701 3.144506 AGTGGCACATCTCAAGTTGAAG 58.855 45.455 21.41 2.82 44.52 3.02
3456 8712 4.107622 CTCAAGTTGAAGGTTGTGCAAAG 58.892 43.478 7.06 0.00 0.00 2.77
3473 8729 8.572828 TGTGCAAAGAAAATTGTATGTAACTG 57.427 30.769 0.00 0.00 32.80 3.16
3480 8736 8.268850 AGAAAATTGTATGTAACTGTAGGCTG 57.731 34.615 0.00 0.00 0.00 4.85
3481 8737 8.100791 AGAAAATTGTATGTAACTGTAGGCTGA 58.899 33.333 0.00 0.00 0.00 4.26
3527 8783 4.819630 TCTTAACCTAAAGTTGTGCACAGG 59.180 41.667 20.59 18.33 39.67 4.00
3553 8809 8.512138 GTTCTAAAATGTGCAACTACCTGTTAT 58.488 33.333 0.00 0.00 37.07 1.89
3602 8859 5.990996 ACTTGGATTTACAAATTGTTGCAGG 59.009 36.000 3.17 1.21 38.39 4.85
3763 9021 6.581919 ACAAAAATTGCAAACACAAAAGCTTC 59.418 30.769 1.71 0.00 32.27 3.86
3788 9046 8.779303 TCTTTGCGATAGTGAAGAAATTTGTTA 58.221 29.630 0.00 0.00 36.63 2.41
3887 9151 4.741676 AGAAAAGAACAAGCAAAGCATTCG 59.258 37.500 0.00 0.00 0.00 3.34
3892 9156 3.648339 ACAAGCAAAGCATTCGTGAAT 57.352 38.095 0.00 0.00 0.00 2.57
3899 9163 2.496899 AGCATTCGTGAATCCTGGTT 57.503 45.000 0.00 0.00 0.00 3.67
3976 9240 6.053005 TGTCGATAAATATGTCTGGTTTCCC 58.947 40.000 0.00 0.00 0.00 3.97
4057 9364 3.266254 ACCCTTAAGAAAAGGAGGTAGGC 59.734 47.826 3.36 0.00 39.81 3.93
4069 9376 2.679082 GAGGTAGGCTCCCATTACTCA 58.321 52.381 0.00 0.00 0.00 3.41
4108 9415 8.599624 AAGTTTCATATTTGTCCATGGATTCT 57.400 30.769 19.62 6.03 0.00 2.40
4180 9487 2.361504 CCCCTCTACCCCTAACTGGAAT 60.362 54.545 0.00 0.00 38.35 3.01
4199 9508 0.250513 TTGGTGGTTTTGGTTGGTGC 59.749 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.041081 CCCAACCACATCCCAGAAAGTA 59.959 50.000 0.00 0.00 0.00 2.24
148 149 3.463585 ATGCAAATGCCTGCGGGG 61.464 61.111 15.02 1.86 45.74 5.73
463 466 8.792633 CCCATGAGAAAATCTACAACTTTTGTA 58.207 33.333 0.00 0.00 43.27 2.41
465 468 7.661040 ACCCATGAGAAAATCTACAACTTTTG 58.339 34.615 0.00 0.00 0.00 2.44
466 469 7.839680 ACCCATGAGAAAATCTACAACTTTT 57.160 32.000 0.00 0.00 0.00 2.27
467 470 7.839680 AACCCATGAGAAAATCTACAACTTT 57.160 32.000 0.00 0.00 0.00 2.66
468 471 7.611855 CCTAACCCATGAGAAAATCTACAACTT 59.388 37.037 0.00 0.00 0.00 2.66
469 472 7.037586 TCCTAACCCATGAGAAAATCTACAACT 60.038 37.037 0.00 0.00 0.00 3.16
470 473 7.110155 TCCTAACCCATGAGAAAATCTACAAC 58.890 38.462 0.00 0.00 0.00 3.32
471 474 7.265599 TCCTAACCCATGAGAAAATCTACAA 57.734 36.000 0.00 0.00 0.00 2.41
472 475 6.884472 TCCTAACCCATGAGAAAATCTACA 57.116 37.500 0.00 0.00 0.00 2.74
473 476 8.459635 GTTTTCCTAACCCATGAGAAAATCTAC 58.540 37.037 0.00 0.00 38.34 2.59
474 477 8.390921 AGTTTTCCTAACCCATGAGAAAATCTA 58.609 33.333 0.00 0.00 38.34 1.98
475 478 7.241628 AGTTTTCCTAACCCATGAGAAAATCT 58.758 34.615 0.00 0.00 38.34 2.40
476 479 7.394641 AGAGTTTTCCTAACCCATGAGAAAATC 59.605 37.037 0.00 0.00 38.34 2.17
477 480 7.177392 CAGAGTTTTCCTAACCCATGAGAAAAT 59.823 37.037 0.00 0.00 38.34 1.82
478 481 6.490040 CAGAGTTTTCCTAACCCATGAGAAAA 59.510 38.462 0.00 0.00 34.87 2.29
479 482 6.003950 CAGAGTTTTCCTAACCCATGAGAAA 58.996 40.000 0.00 0.00 0.00 2.52
480 483 5.560724 CAGAGTTTTCCTAACCCATGAGAA 58.439 41.667 0.00 0.00 0.00 2.87
481 484 4.565652 GCAGAGTTTTCCTAACCCATGAGA 60.566 45.833 0.00 0.00 0.00 3.27
482 485 3.691609 GCAGAGTTTTCCTAACCCATGAG 59.308 47.826 0.00 0.00 0.00 2.90
483 486 3.330701 AGCAGAGTTTTCCTAACCCATGA 59.669 43.478 0.00 0.00 0.00 3.07
484 487 3.690460 AGCAGAGTTTTCCTAACCCATG 58.310 45.455 0.00 0.00 0.00 3.66
485 488 3.308473 GGAGCAGAGTTTTCCTAACCCAT 60.308 47.826 0.00 0.00 0.00 4.00
486 489 2.039879 GGAGCAGAGTTTTCCTAACCCA 59.960 50.000 0.00 0.00 0.00 4.51
487 490 2.618302 GGGAGCAGAGTTTTCCTAACCC 60.618 54.545 0.00 0.00 0.00 4.11
488 491 2.306219 AGGGAGCAGAGTTTTCCTAACC 59.694 50.000 0.00 0.00 0.00 2.85
489 492 3.704800 AGGGAGCAGAGTTTTCCTAAC 57.295 47.619 0.00 0.00 0.00 2.34
490 493 5.836024 TTTAGGGAGCAGAGTTTTCCTAA 57.164 39.130 0.00 0.00 35.73 2.69
491 494 6.388619 AATTTAGGGAGCAGAGTTTTCCTA 57.611 37.500 0.00 0.00 0.00 2.94
492 495 4.936685 ATTTAGGGAGCAGAGTTTTCCT 57.063 40.909 0.00 0.00 0.00 3.36
493 496 7.646548 AATAATTTAGGGAGCAGAGTTTTCC 57.353 36.000 0.00 0.00 0.00 3.13
496 499 9.975218 TCTTAAATAATTTAGGGAGCAGAGTTT 57.025 29.630 0.00 0.00 0.00 2.66
497 500 9.975218 TTCTTAAATAATTTAGGGAGCAGAGTT 57.025 29.630 0.00 0.00 0.00 3.01
498 501 9.975218 TTTCTTAAATAATTTAGGGAGCAGAGT 57.025 29.630 0.00 0.00 0.00 3.24
531 534 7.756395 ACATCACAAATGTTCTTTGAGATCT 57.244 32.000 0.00 0.00 37.53 2.75
772 797 2.368875 TCTCCAGGTTTCCAGTCTGAAC 59.631 50.000 0.00 0.00 0.00 3.18
892 1236 5.452302 GCAAGCATACAAATGTACATTCGAC 59.548 40.000 21.02 8.34 35.38 4.20
961 4762 5.178809 ACTGAACGCTTCAAACCAAGTATAC 59.821 40.000 0.00 0.00 39.58 1.47
1025 4826 2.225963 CCTATACAGAAGTAGTCGGCCG 59.774 54.545 22.12 22.12 32.86 6.13
1039 4840 7.797062 TGCACCACAGAATATAAACCTATACA 58.203 34.615 0.00 0.00 0.00 2.29
1138 4939 2.261671 GCTCACCGGTGTGACGAT 59.738 61.111 34.54 0.00 46.40 3.73
1258 5062 2.773661 TGATGTACATCCAGTGGCAGAT 59.226 45.455 28.64 0.00 37.02 2.90
1357 5161 2.587522 GTTGGGGAAAGCTGAGAAGTT 58.412 47.619 0.00 0.00 0.00 2.66
1435 5239 1.072331 CACCAGGCTTGTCAGGTTACT 59.928 52.381 0.00 0.00 30.44 2.24
1567 5371 1.134670 ACCAATCTCTTCAGGTAGCGC 60.135 52.381 0.00 0.00 31.32 5.92
1678 5482 2.945008 TGTTGTTTCTCAGGTTCAGCAG 59.055 45.455 0.00 0.00 0.00 4.24
1712 5516 1.274703 ACCAATCTCCAGCGGGATGT 61.275 55.000 5.89 0.00 43.91 3.06
2008 5819 2.146342 CGTGCAGTTCTGAAAGGTCAT 58.854 47.619 3.84 0.00 31.85 3.06
2091 5902 2.222027 CGAAGTTGTTCTGGAGGCTTT 58.778 47.619 0.00 0.00 0.00 3.51
2211 6022 6.095377 GTCTCCATTTAAGGCATTGTTTGAG 58.905 40.000 0.00 0.00 0.00 3.02
2238 6049 5.255397 TCCATAAACACTTGGAGTTGGAT 57.745 39.130 0.00 0.00 37.10 3.41
3117 8368 4.880120 TCTTCATCCTGCTTCATGTCATTC 59.120 41.667 0.00 0.00 0.00 2.67
3123 8374 5.557866 TCCATATCTTCATCCTGCTTCATG 58.442 41.667 0.00 0.00 0.00 3.07
3128 8379 4.040217 GTGTCTCCATATCTTCATCCTGCT 59.960 45.833 0.00 0.00 0.00 4.24
3129 8380 4.040217 AGTGTCTCCATATCTTCATCCTGC 59.960 45.833 0.00 0.00 0.00 4.85
3238 8492 9.494479 GTTGTCAACATATTGATAGAACACATG 57.506 33.333 10.93 0.00 46.43 3.21
3239 8493 9.230122 TGTTGTCAACATATTGATAGAACACAT 57.770 29.630 14.48 0.00 46.43 3.21
3385 8641 8.928270 AATTACAACCTAAGAAGTGTAGATCG 57.072 34.615 0.00 0.00 0.00 3.69
3423 8679 3.213206 TCAACTTGAGATGTGCCACTT 57.787 42.857 0.00 0.00 0.00 3.16
3445 8701 6.843069 ACATACAATTTTCTTTGCACAACC 57.157 33.333 0.00 0.00 0.00 3.77
3456 8712 8.263940 TCAGCCTACAGTTACATACAATTTTC 57.736 34.615 0.00 0.00 0.00 2.29
3473 8729 0.464554 GCCCACATTCCTCAGCCTAC 60.465 60.000 0.00 0.00 0.00 3.18
3480 8736 0.895100 TGCAACTGCCCACATTCCTC 60.895 55.000 0.00 0.00 41.18 3.71
3481 8737 1.153524 TGCAACTGCCCACATTCCT 59.846 52.632 0.00 0.00 41.18 3.36
3527 8783 6.313744 ACAGGTAGTTGCACATTTTAGAAC 57.686 37.500 0.00 0.00 0.00 3.01
3553 8809 5.097742 ACGGTACAATCTTGATCCAATGA 57.902 39.130 0.00 0.00 0.00 2.57
3628 8886 3.323979 AGTTTTCTTCAGCGAGTAAGGGA 59.676 43.478 0.00 0.00 0.00 4.20
3675 8933 8.079211 ACATTCCTACTGAAGCTTATAAGTCA 57.921 34.615 13.91 9.47 36.14 3.41
3713 8971 5.818136 TGCTGACATTTGGAATAGCTTAC 57.182 39.130 0.00 0.00 32.66 2.34
3763 9021 7.858052 AACAAATTTCTTCACTATCGCAAAG 57.142 32.000 0.00 0.00 0.00 2.77
3788 9046 4.060205 GGTGCAAGCATTCAAAATGTCTT 58.940 39.130 0.00 3.48 0.00 3.01
3868 9132 3.066621 TCACGAATGCTTTGCTTGTTCTT 59.933 39.130 0.00 0.00 0.00 2.52
3869 9133 2.618241 TCACGAATGCTTTGCTTGTTCT 59.382 40.909 0.00 0.00 0.00 3.01
3870 9134 2.998772 TCACGAATGCTTTGCTTGTTC 58.001 42.857 0.00 0.00 0.00 3.18
3871 9135 3.435105 TTCACGAATGCTTTGCTTGTT 57.565 38.095 0.00 0.00 0.00 2.83
3872 9136 3.568538 GATTCACGAATGCTTTGCTTGT 58.431 40.909 0.00 0.00 0.00 3.16
3879 9143 2.496899 ACCAGGATTCACGAATGCTT 57.503 45.000 10.69 0.00 45.34 3.91
3887 9151 2.954318 CCATGATGGAACCAGGATTCAC 59.046 50.000 5.27 0.00 40.96 3.18
3892 9156 1.005805 CCAACCATGATGGAACCAGGA 59.994 52.381 20.11 0.00 40.96 3.86
3899 9163 4.320546 AGATTCAACCAACCATGATGGA 57.679 40.909 20.11 0.00 40.96 3.41
4022 9329 5.708736 TCTTAAGGGTAGCAATCCATTGA 57.291 39.130 1.85 0.00 40.14 2.57
4057 9364 4.999950 GCCATAGTTCATGAGTAATGGGAG 59.000 45.833 23.20 8.13 36.69 4.30
4069 9376 9.646522 AAATATGAAACTTAGGCCATAGTTCAT 57.353 29.630 19.18 21.33 33.66 2.57
4108 9415 6.783977 TGAGGGTGTCCTTCTAGTTAGTTTTA 59.216 38.462 0.00 0.00 45.05 1.52
4180 9487 0.250513 GCACCAACCAAAACCACCAA 59.749 50.000 0.00 0.00 0.00 3.67
4199 9508 3.915437 AAAAATGACAGTTAGGTGCCG 57.085 42.857 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.