Multiple sequence alignment - TraesCS2D01G421100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G421100 chr2D 100.000 4291 0 0 1 4291 534923235 534927525 0.000000e+00 7925.0
1 TraesCS2D01G421100 chr2D 100.000 2923 0 0 4849 7771 534928083 534931005 0.000000e+00 5398.0
2 TraesCS2D01G421100 chr2D 95.809 859 33 3 3428 4285 558787866 558788722 0.000000e+00 1384.0
3 TraesCS2D01G421100 chr2D 97.590 166 4 0 5538 5703 316334113 316333948 1.280000e-72 285.0
4 TraesCS2D01G421100 chr2D 95.480 177 7 1 5539 5715 554128209 554128384 1.650000e-71 281.0
5 TraesCS2D01G421100 chr2D 91.772 158 11 2 5369 5525 337850058 337850214 1.310000e-52 219.0
6 TraesCS2D01G421100 chr2D 92.969 128 7 2 3001 3126 138294391 138294518 1.330000e-42 185.0
7 TraesCS2D01G421100 chr2D 90.517 116 11 0 2912 3027 341666646 341666531 3.750000e-33 154.0
8 TraesCS2D01G421100 chr2D 90.517 116 11 0 2912 3027 341666777 341666662 3.750000e-33 154.0
9 TraesCS2D01G421100 chr2D 100.000 48 0 0 4850 4897 562219871 562219918 1.070000e-13 89.8
10 TraesCS2D01G421100 chr2A 92.722 2116 90 24 5702 7771 678162946 678165043 0.000000e+00 2996.0
11 TraesCS2D01G421100 chr2A 84.615 2106 174 70 6 2035 678158678 678160709 0.000000e+00 1956.0
12 TraesCS2D01G421100 chr2A 96.076 841 33 0 3428 4268 72366434 72367274 0.000000e+00 1371.0
13 TraesCS2D01G421100 chr2A 94.872 858 43 1 3428 4285 715381095 715381951 0.000000e+00 1339.0
14 TraesCS2D01G421100 chr2A 92.293 519 36 4 2314 2828 678161439 678161957 0.000000e+00 734.0
15 TraesCS2D01G421100 chr2A 88.475 295 18 4 2027 2316 678161069 678161352 7.470000e-90 342.0
16 TraesCS2D01G421100 chr2A 91.866 209 13 2 2912 3117 753540524 753540317 9.870000e-74 289.0
17 TraesCS2D01G421100 chr2A 83.893 298 23 7 4929 5213 678162429 678162714 2.150000e-65 261.0
18 TraesCS2D01G421100 chr2A 85.200 250 21 10 3116 3361 678162098 678162335 7.790000e-60 243.0
19 TraesCS2D01G421100 chr2A 97.802 91 2 0 2225 2315 617178896 617178806 2.900000e-34 158.0
20 TraesCS2D01G421100 chr2A 90.722 97 8 1 3116 3212 678162003 678162098 2.280000e-25 128.0
21 TraesCS2D01G421100 chr2A 91.781 73 6 0 3357 3429 678162369 678162441 1.380000e-17 102.0
22 TraesCS2D01G421100 chr2A 100.000 51 0 0 4849 4899 72367638 72367688 2.310000e-15 95.3
23 TraesCS2D01G421100 chr2A 97.619 42 1 0 2856 2897 678161964 678162005 1.080000e-08 73.1
24 TraesCS2D01G421100 chr2B 91.000 2011 114 30 5810 7771 636111909 636113901 0.000000e+00 2649.0
25 TraesCS2D01G421100 chr2B 85.072 1668 128 42 605 2217 636108967 636110568 0.000000e+00 1589.0
26 TraesCS2D01G421100 chr2B 87.759 580 57 7 2321 2895 636110563 636111133 0.000000e+00 665.0
27 TraesCS2D01G421100 chr2B 84.053 602 37 23 1 573 636108396 636108967 6.910000e-145 525.0
28 TraesCS2D01G421100 chr2B 91.333 150 11 2 5363 5511 175632686 175632834 3.680000e-48 204.0
29 TraesCS2D01G421100 chr2B 82.353 204 33 3 2915 3117 620639386 620639185 2.880000e-39 174.0
30 TraesCS2D01G421100 chr2B 84.530 181 12 7 5123 5302 636111559 636111724 1.730000e-36 165.0
31 TraesCS2D01G421100 chr6A 96.056 862 30 2 3431 4291 419774086 419773228 0.000000e+00 1400.0
32 TraesCS2D01G421100 chr6A 86.772 189 24 1 2930 3117 548239471 548239659 7.900000e-50 209.0
33 TraesCS2D01G421100 chr6A 92.308 117 9 0 3001 3117 595781984 595781868 4.820000e-37 167.0
34 TraesCS2D01G421100 chr6A 91.667 108 9 0 2914 3021 75913561 75913668 4.860000e-32 150.0
35 TraesCS2D01G421100 chr1D 95.809 859 34 2 3427 4285 270634335 270635191 0.000000e+00 1386.0
36 TraesCS2D01G421100 chr1D 95.954 173 7 0 5535 5707 238940384 238940212 1.650000e-71 281.0
37 TraesCS2D01G421100 chr1D 93.333 120 8 0 2998 3117 1026860 1026741 2.230000e-40 178.0
38 TraesCS2D01G421100 chr1D 94.898 98 5 0 2229 2326 206040980 206041077 3.750000e-33 154.0
39 TraesCS2D01G421100 chr1D 97.753 89 2 0 2230 2318 209139362 209139274 3.750000e-33 154.0
40 TraesCS2D01G421100 chr1D 86.429 140 17 2 2912 3049 461146994 461147133 1.350000e-32 152.0
41 TraesCS2D01G421100 chr1D 89.655 116 12 0 2912 3027 74927508 74927393 1.750000e-31 148.0
42 TraesCS2D01G421100 chr1D 96.629 89 3 0 2231 2319 318382878 318382790 1.750000e-31 148.0
43 TraesCS2D01G421100 chr1D 83.333 162 23 4 2912 3071 199002613 199002772 6.280000e-31 147.0
44 TraesCS2D01G421100 chr1D 96.552 58 1 1 4849 4905 26391283 26391226 2.310000e-15 95.3
45 TraesCS2D01G421100 chr1D 93.103 58 3 1 4849 4905 270635566 270635623 5.000000e-12 84.2
46 TraesCS2D01G421100 chr3D 95.698 860 34 2 3427 4285 20702648 20703505 0.000000e+00 1380.0
47 TraesCS2D01G421100 chr3D 95.122 861 39 2 3429 4288 445110568 445109710 0.000000e+00 1354.0
48 TraesCS2D01G421100 chr3D 86.667 210 19 6 2912 3117 607093651 607093855 2.820000e-54 224.0
49 TraesCS2D01G421100 chr3D 94.118 119 7 0 3001 3119 5478059 5478177 1.720000e-41 182.0
50 TraesCS2D01G421100 chr3D 96.875 96 3 0 2224 2319 67481225 67481320 2.240000e-35 161.0
51 TraesCS2D01G421100 chr3D 94.949 99 4 1 2229 2326 278514943 278515041 3.750000e-33 154.0
52 TraesCS2D01G421100 chr7A 94.913 865 43 1 3427 4291 421748379 421747516 0.000000e+00 1352.0
53 TraesCS2D01G421100 chr7A 87.425 167 18 3 2912 3077 721098439 721098275 1.030000e-43 189.0
54 TraesCS2D01G421100 chr7A 85.802 162 19 3 2913 3071 650696965 650697125 1.340000e-37 169.0
55 TraesCS2D01G421100 chr1A 94.792 864 44 1 3428 4291 286005163 286004301 0.000000e+00 1345.0
56 TraesCS2D01G421100 chr1A 94.406 143 7 1 5372 5514 520812206 520812347 1.310000e-52 219.0
57 TraesCS2D01G421100 chr1A 98.837 86 1 0 2231 2316 530756659 530756574 3.750000e-33 154.0
58 TraesCS2D01G421100 chr1A 92.523 107 7 1 2231 2337 12556265 12556160 1.350000e-32 152.0
59 TraesCS2D01G421100 chr1A 98.039 51 1 0 4849 4899 165815329 165815379 1.070000e-13 89.8
60 TraesCS2D01G421100 chr5A 96.067 178 7 0 5534 5711 382566807 382566630 2.740000e-74 291.0
61 TraesCS2D01G421100 chr5A 95.954 173 7 0 5532 5704 332291607 332291435 1.650000e-71 281.0
62 TraesCS2D01G421100 chr6D 96.512 172 5 1 5535 5705 32865338 32865167 4.590000e-72 283.0
63 TraesCS2D01G421100 chr6D 96.491 171 6 0 5537 5707 406391357 406391527 4.590000e-72 283.0
64 TraesCS2D01G421100 chr6D 90.625 160 5 5 5369 5527 346454041 346453891 3.680000e-48 204.0
65 TraesCS2D01G421100 chr6D 95.000 120 6 0 3001 3120 449134104 449133985 1.030000e-43 189.0
66 TraesCS2D01G421100 chr6D 94.068 118 7 0 3000 3117 188888238 188888121 6.200000e-41 180.0
67 TraesCS2D01G421100 chr6D 93.333 120 8 0 3000 3119 17166637 17166756 2.230000e-40 178.0
68 TraesCS2D01G421100 chr6D 92.500 120 9 0 3001 3120 305136527 305136408 1.040000e-38 172.0
69 TraesCS2D01G421100 chr6D 90.833 120 11 0 2999 3118 147675688 147675569 2.240000e-35 161.0
70 TraesCS2D01G421100 chr6D 90.756 119 11 0 3000 3118 366701223 366701105 8.070000e-35 159.0
71 TraesCS2D01G421100 chr6D 90.083 121 12 0 2999 3119 136474596 136474716 2.900000e-34 158.0
72 TraesCS2D01G421100 chr6D 90.678 118 11 0 3000 3117 137532963 137533080 2.900000e-34 158.0
73 TraesCS2D01G421100 chr6D 98.851 87 0 1 2229 2315 1551798 1551883 3.750000e-33 154.0
74 TraesCS2D01G421100 chr6D 97.727 88 2 0 2231 2318 199210328 199210415 1.350000e-32 152.0
75 TraesCS2D01G421100 chr6D 96.703 91 3 0 2912 3002 304102873 304102783 1.350000e-32 152.0
76 TraesCS2D01G421100 chr6D 96.739 92 2 1 2912 3002 306708008 306708099 1.350000e-32 152.0
77 TraesCS2D01G421100 chr6D 96.703 91 3 0 2912 3002 351233544 351233454 1.350000e-32 152.0
78 TraesCS2D01G421100 chr6D 97.727 88 2 0 2229 2316 427344853 427344940 1.350000e-32 152.0
79 TraesCS2D01G421100 chr6D 97.674 86 2 0 2231 2316 114156790 114156705 1.750000e-31 148.0
80 TraesCS2D01G421100 chr6D 94.681 94 5 0 2228 2321 20553756 20553663 6.280000e-31 147.0
81 TraesCS2D01G421100 chr6D 95.604 91 4 0 2912 3002 90134999 90134909 6.280000e-31 147.0
82 TraesCS2D01G421100 chr6D 92.929 99 5 2 2217 2315 380137076 380136980 8.130000e-30 143.0
83 TraesCS2D01G421100 chr6D 94.505 91 5 0 2912 3002 431160719 431160809 2.920000e-29 141.0
84 TraesCS2D01G421100 chr6D 93.684 95 4 1 2234 2328 465044504 465044412 2.920000e-29 141.0
85 TraesCS2D01G421100 chr6D 96.491 57 2 0 4849 4905 441372948 441372892 2.310000e-15 95.3
86 TraesCS2D01G421100 chr4D 97.576 165 4 0 5536 5700 477898792 477898956 4.590000e-72 283.0
87 TraesCS2D01G421100 chr4D 87.821 156 19 0 2962 3117 40952232 40952387 4.790000e-42 183.0
88 TraesCS2D01G421100 chr4D 97.802 91 2 0 2912 3002 21147841 21147751 2.900000e-34 158.0
89 TraesCS2D01G421100 chr4D 98.864 88 1 0 2230 2317 252173703 252173790 2.900000e-34 158.0
90 TraesCS2D01G421100 chr4D 90.517 116 11 0 2912 3027 238640076 238640191 3.750000e-33 154.0
91 TraesCS2D01G421100 chr4D 97.753 89 2 0 2228 2316 324227758 324227846 3.750000e-33 154.0
92 TraesCS2D01G421100 chr4D 98.148 54 1 0 4849 4902 740636 740583 2.310000e-15 95.3
93 TraesCS2D01G421100 chr7D 93.956 182 11 0 5532 5713 83631899 83632080 7.680000e-70 276.0
94 TraesCS2D01G421100 chr7D 94.118 119 7 0 3000 3118 457342548 457342430 1.720000e-41 182.0
95 TraesCS2D01G421100 chr5D 95.918 147 4 2 5369 5514 399614672 399614527 3.620000e-58 237.0
96 TraesCS2D01G421100 chr5D 94.068 118 7 0 3001 3118 309426672 309426789 6.200000e-41 180.0
97 TraesCS2D01G421100 chr5D 95.833 96 3 1 2222 2316 310705256 310705351 3.750000e-33 154.0
98 TraesCS2D01G421100 chr5D 94.898 98 3 2 2219 2315 128577576 128577672 1.350000e-32 152.0
99 TraesCS2D01G421100 chr5D 96.364 55 1 1 4849 4902 305733128 305733074 1.070000e-13 89.8
100 TraesCS2D01G421100 chr5B 95.918 147 4 2 5369 5514 479726985 479726840 3.620000e-58 237.0
101 TraesCS2D01G421100 chr5B 96.809 94 1 2 2223 2316 134923472 134923381 1.040000e-33 156.0
102 TraesCS2D01G421100 chr7B 86.538 208 25 3 2912 3117 506726585 506726791 7.850000e-55 226.0
103 TraesCS2D01G421100 chr7B 87.603 121 13 2 2225 2345 658638791 658638673 1.050000e-28 139.0
104 TraesCS2D01G421100 chr1B 92.667 150 9 2 5369 5517 574286847 574286995 1.700000e-51 215.0
105 TraesCS2D01G421100 chr1B 83.744 203 31 2 2915 3116 217291851 217292052 2.860000e-44 191.0
106 TraesCS2D01G421100 chr1B 88.961 154 17 0 2964 3117 558228300 558228147 2.860000e-44 191.0
107 TraesCS2D01G421100 chr1B 83.254 209 29 5 2913 3117 563066523 563066317 3.700000e-43 187.0
108 TraesCS2D01G421100 chr1B 96.226 53 2 0 4850 4902 6407872 6407820 3.860000e-13 87.9
109 TraesCS2D01G421100 chr4B 92.466 146 9 2 5372 5517 277316534 277316677 2.840000e-49 207.0
110 TraesCS2D01G421100 chr6B 91.333 150 5 3 5369 5517 534954003 534954145 1.710000e-46 198.0
111 TraesCS2D01G421100 chr6B 83.732 209 29 3 2912 3117 149418532 149418738 7.960000e-45 193.0
112 TraesCS2D01G421100 chrUn 82.949 217 23 6 2912 3117 250029627 250029414 4.790000e-42 183.0
113 TraesCS2D01G421100 chrUn 92.308 117 8 1 2912 3027 87983347 87983231 1.730000e-36 165.0
114 TraesCS2D01G421100 chrUn 91.525 118 10 0 3000 3117 21233226 21233109 6.240000e-36 163.0
115 TraesCS2D01G421100 chrUn 90.000 120 12 0 3001 3120 87827509 87827390 1.040000e-33 156.0
116 TraesCS2D01G421100 chrUn 90.000 120 12 0 3001 3120 309972554 309972435 1.040000e-33 156.0
117 TraesCS2D01G421100 chrUn 90.598 117 11 0 3001 3117 393577682 393577566 1.040000e-33 156.0
118 TraesCS2D01G421100 chrUn 89.744 117 12 0 3001 3117 30022471 30022355 4.860000e-32 150.0
119 TraesCS2D01G421100 chrUn 89.076 119 13 0 3000 3118 100620880 100620762 1.750000e-31 148.0
120 TraesCS2D01G421100 chrUn 97.674 86 2 0 2231 2316 101630884 101630799 1.750000e-31 148.0
121 TraesCS2D01G421100 chrUn 90.179 112 11 0 3001 3112 70385232 70385121 6.280000e-31 147.0
122 TraesCS2D01G421100 chrUn 95.604 91 4 0 2912 3002 80232780 80232690 6.280000e-31 147.0
123 TraesCS2D01G421100 chrUn 88.430 121 14 0 2997 3117 278783089 278782969 6.280000e-31 147.0
124 TraesCS2D01G421100 chrUn 88.430 121 14 0 2997 3117 317427157 317427277 6.280000e-31 147.0
125 TraesCS2D01G421100 chrUn 95.604 91 3 1 2912 3002 81477747 81477658 2.260000e-30 145.0
126 TraesCS2D01G421100 chrUn 88.333 120 14 0 2998 3117 284430854 284430973 2.260000e-30 145.0
127 TraesCS2D01G421100 chrUn 88.430 121 12 2 2225 2345 348315200 348315082 2.260000e-30 145.0
128 TraesCS2D01G421100 chrUn 88.983 118 11 2 2225 2342 427230607 427230722 2.260000e-30 145.0
129 TraesCS2D01G421100 chrUn 97.619 84 1 1 2230 2313 320256097 320256179 8.130000e-30 143.0
130 TraesCS2D01G421100 chrUn 97.619 84 1 1 2230 2313 357700747 357700829 8.130000e-30 143.0
131 TraesCS2D01G421100 chrUn 96.512 86 3 0 2231 2316 362465038 362464953 8.130000e-30 143.0
132 TraesCS2D01G421100 chrUn 95.455 88 4 0 2231 2318 3346482 3346395 2.920000e-29 141.0
133 TraesCS2D01G421100 chrUn 87.603 121 13 2 2225 2345 377707942 377707824 1.050000e-28 139.0
134 TraesCS2D01G421100 chrUn 94.382 89 5 0 2230 2318 158062312 158062224 3.780000e-28 137.0
135 TraesCS2D01G421100 chrUn 94.382 89 5 0 2230 2318 478545605 478545517 3.780000e-28 137.0
136 TraesCS2D01G421100 chrUn 92.553 94 7 0 2225 2318 382593681 382593774 1.360000e-27 135.0
137 TraesCS2D01G421100 chrUn 92.308 91 7 0 2912 3002 29994467 29994377 6.330000e-26 130.0
138 TraesCS2D01G421100 chrUn 91.209 91 8 0 2912 3002 34210862 34210772 2.940000e-24 124.0
139 TraesCS2D01G421100 chrUn 91.209 91 8 0 2912 3002 96474093 96474003 2.940000e-24 124.0
140 TraesCS2D01G421100 chrUn 91.209 91 8 0 2912 3002 101044529 101044439 2.940000e-24 124.0
141 TraesCS2D01G421100 chrUn 91.209 91 8 0 2912 3002 178663632 178663542 2.940000e-24 124.0
142 TraesCS2D01G421100 chr4A 92.063 126 9 1 2998 3122 738312209 738312084 8.010000e-40 176.0
143 TraesCS2D01G421100 chr3B 81.818 209 34 2 2912 3117 719901025 719900818 1.040000e-38 172.0
144 TraesCS2D01G421100 chr3B 95.833 96 4 0 2224 2319 112281178 112281273 1.040000e-33 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G421100 chr2D 534923235 534931005 7770 False 6661.500000 7925 100.000000 1 7771 2 chr2D.!!$F6 7770
1 TraesCS2D01G421100 chr2D 558787866 558788722 856 False 1384.000000 1384 95.809000 3428 4285 1 chr2D.!!$F4 857
2 TraesCS2D01G421100 chr2A 715381095 715381951 856 False 1339.000000 1339 94.872000 3428 4285 1 chr2A.!!$F1 857
3 TraesCS2D01G421100 chr2A 678158678 678165043 6365 False 759.455556 2996 89.702222 6 7771 9 chr2A.!!$F3 7765
4 TraesCS2D01G421100 chr2A 72366434 72367688 1254 False 733.150000 1371 98.038000 3428 4899 2 chr2A.!!$F2 1471
5 TraesCS2D01G421100 chr2B 636108396 636113901 5505 False 1118.600000 2649 86.482800 1 7771 5 chr2B.!!$F2 7770
6 TraesCS2D01G421100 chr6A 419773228 419774086 858 True 1400.000000 1400 96.056000 3431 4291 1 chr6A.!!$R1 860
7 TraesCS2D01G421100 chr1D 270634335 270635623 1288 False 735.100000 1386 94.456000 3427 4905 2 chr1D.!!$F4 1478
8 TraesCS2D01G421100 chr3D 20702648 20703505 857 False 1380.000000 1380 95.698000 3427 4285 1 chr3D.!!$F2 858
9 TraesCS2D01G421100 chr3D 445109710 445110568 858 True 1354.000000 1354 95.122000 3429 4288 1 chr3D.!!$R1 859
10 TraesCS2D01G421100 chr7A 421747516 421748379 863 True 1352.000000 1352 94.913000 3427 4291 1 chr7A.!!$R1 864
11 TraesCS2D01G421100 chr1A 286004301 286005163 862 True 1345.000000 1345 94.792000 3428 4291 1 chr1A.!!$R2 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 431 0.110486 GGTGGGTTTGAGGAGCTTGA 59.890 55.0 0.00 0.00 0.00 3.02 F
796 842 0.112995 AAAGCCTTGTCCCATCAGCA 59.887 50.0 0.00 0.00 0.00 4.41 F
1756 1871 0.324460 AGTCGTAACTGGAGGAGGGG 60.324 60.0 0.00 0.00 33.32 4.79 F
2849 3450 0.035056 GCTGCAGATACAAGGGTGGT 60.035 55.0 20.43 0.00 0.00 4.16 F
3018 3619 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.00 44.66 3.13 F
3020 3621 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 F
3022 3623 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
5023 5783 0.177604 CGAAATGGCAGGAGCTCTCT 59.822 55.0 14.64 6.28 41.70 3.10 F
6291 7114 0.250513 ATCGAAGGCGCTTTCCTCTT 59.749 50.0 24.45 10.24 34.82 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1662 0.250038 GATATGGCGAAGGAGCAGCA 60.250 55.000 0.00 0.0 39.27 4.41 R
2669 3268 0.110486 GGTTCCCTGAAACCTGCAGA 59.890 55.000 17.39 0.0 44.45 4.26 R
2999 3600 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.0 46.06 2.12 R
4147 4901 3.626924 GCGGCTCGGATATGGGGT 61.627 66.667 0.00 0.0 0.00 4.95 R
5004 5764 0.177604 AGAGAGCTCCTGCCATTTCG 59.822 55.000 10.93 0.0 40.80 3.46 R
5024 5784 6.818142 ACATTCCTTACCTTTAATGCAAATGC 59.182 34.615 0.00 0.0 42.50 3.56 R
5027 5787 8.410673 TGTACATTCCTTACCTTTAATGCAAA 57.589 30.769 0.00 0.0 33.57 3.68 R
6665 7488 0.107703 CATGGTTCTTCCTAGCGCCA 60.108 55.000 2.29 0.0 37.07 5.69 R
7639 8502 0.520404 GACAATGTGCCAGCAGACAG 59.480 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.278596 GCCAAGAGCATGCGCATG 60.279 61.111 39.42 39.42 42.97 4.06
77 80 1.327507 GCGAACACGCCAAGATTTTC 58.672 50.000 3.16 0.00 45.62 2.29
91 94 0.675633 ATTTTCGGTGCTTGCTGCTT 59.324 45.000 0.00 0.00 43.37 3.91
92 95 0.248990 TTTTCGGTGCTTGCTGCTTG 60.249 50.000 0.00 0.00 43.37 4.01
96 99 2.732658 GTGCTTGCTGCTTGGCTT 59.267 55.556 0.00 0.00 43.37 4.35
97 100 1.663702 GTGCTTGCTGCTTGGCTTG 60.664 57.895 0.00 0.00 43.37 4.01
98 101 2.048503 GCTTGCTGCTTGGCTTGG 60.049 61.111 0.00 0.00 38.95 3.61
100 103 1.526575 GCTTGCTGCTTGGCTTGGTA 61.527 55.000 0.00 0.00 38.95 3.25
101 104 0.961019 CTTGCTGCTTGGCTTGGTAA 59.039 50.000 0.00 0.00 0.00 2.85
104 115 2.091541 TGCTGCTTGGCTTGGTAATAC 58.908 47.619 0.00 0.00 0.00 1.89
107 121 3.561725 GCTGCTTGGCTTGGTAATACTAG 59.438 47.826 0.00 0.00 0.00 2.57
112 126 6.608405 TGCTTGGCTTGGTAATACTAGTAGTA 59.392 38.462 12.38 12.38 34.82 1.82
113 127 7.124599 TGCTTGGCTTGGTAATACTAGTAGTAA 59.875 37.037 13.92 0.00 33.89 2.24
128 142 5.857822 AGTAGTAATTTGTGCGAGGTTTC 57.142 39.130 0.00 0.00 0.00 2.78
142 156 2.170607 GAGGTTTCGGATCTGGATTCCA 59.829 50.000 5.05 5.05 0.00 3.53
149 163 1.143889 GGATCTGGATTCCAAGACCCC 59.856 57.143 6.88 7.85 30.80 4.95
167 184 3.188773 CGCAATATCCTCGGCGTTA 57.811 52.632 6.85 0.00 44.11 3.18
168 185 1.710013 CGCAATATCCTCGGCGTTAT 58.290 50.000 6.85 1.58 44.11 1.89
175 192 0.319083 TCCTCGGCGTTATTGTGTGT 59.681 50.000 6.85 0.00 0.00 3.72
176 193 0.442310 CCTCGGCGTTATTGTGTGTG 59.558 55.000 6.85 0.00 0.00 3.82
177 194 1.424403 CTCGGCGTTATTGTGTGTGA 58.576 50.000 6.85 0.00 0.00 3.58
222 241 5.582665 GCTTCTCTCGTTAAAGAATCCACAT 59.417 40.000 0.00 0.00 31.45 3.21
287 309 4.314740 AGTAGTGCTAGTATTGCTCAGC 57.685 45.455 0.00 0.00 34.56 4.26
317 339 1.845205 CCCATCCCTCCCTGCCTAG 60.845 68.421 0.00 0.00 0.00 3.02
340 362 0.319900 TCTCGTGGTCAGAGCTTTGC 60.320 55.000 0.00 0.00 35.79 3.68
342 364 2.558313 GTGGTCAGAGCTTTGCGC 59.442 61.111 0.00 0.00 39.57 6.09
361 387 1.085091 CTGCAACCTTGAGCTGCTAG 58.915 55.000 0.15 0.00 37.00 3.42
363 389 1.202806 TGCAACCTTGAGCTGCTAGTT 60.203 47.619 0.15 1.49 37.00 2.24
370 396 2.949177 TGAGCTGCTAGTTTCCCAAA 57.051 45.000 0.15 0.00 0.00 3.28
393 422 2.986050 AGAGTTCCTAGGTGGGTTTGA 58.014 47.619 9.08 0.00 36.20 2.69
394 423 2.907042 AGAGTTCCTAGGTGGGTTTGAG 59.093 50.000 9.08 0.00 36.20 3.02
395 424 1.985895 AGTTCCTAGGTGGGTTTGAGG 59.014 52.381 9.08 0.00 36.20 3.86
396 425 1.982958 GTTCCTAGGTGGGTTTGAGGA 59.017 52.381 9.08 0.00 34.46 3.71
397 426 1.952621 TCCTAGGTGGGTTTGAGGAG 58.047 55.000 9.08 0.00 36.20 3.69
398 427 0.253327 CCTAGGTGGGTTTGAGGAGC 59.747 60.000 0.00 0.00 0.00 4.70
399 428 1.280457 CTAGGTGGGTTTGAGGAGCT 58.720 55.000 0.00 0.00 0.00 4.09
400 429 1.630878 CTAGGTGGGTTTGAGGAGCTT 59.369 52.381 0.00 0.00 0.00 3.74
401 430 0.111253 AGGTGGGTTTGAGGAGCTTG 59.889 55.000 0.00 0.00 0.00 4.01
402 431 0.110486 GGTGGGTTTGAGGAGCTTGA 59.890 55.000 0.00 0.00 0.00 3.02
403 432 1.528129 GTGGGTTTGAGGAGCTTGAG 58.472 55.000 0.00 0.00 0.00 3.02
404 433 0.401738 TGGGTTTGAGGAGCTTGAGG 59.598 55.000 0.00 0.00 0.00 3.86
405 434 0.962855 GGGTTTGAGGAGCTTGAGGC 60.963 60.000 0.00 0.00 42.19 4.70
406 435 0.962855 GGTTTGAGGAGCTTGAGGCC 60.963 60.000 0.00 0.00 43.05 5.19
431 460 2.642996 TATCTCCGGCGCATGTGTGG 62.643 60.000 10.83 10.43 0.00 4.17
439 482 1.605202 GGCGCATGTGTGGTCAAAAAT 60.605 47.619 10.83 0.00 0.00 1.82
452 495 8.711457 GTGTGGTCAAAAATGGATTTTATTCTG 58.289 33.333 0.00 0.00 39.20 3.02
454 497 7.603784 GTGGTCAAAAATGGATTTTATTCTGCT 59.396 33.333 0.00 0.00 39.20 4.24
455 498 8.156165 TGGTCAAAAATGGATTTTATTCTGCTT 58.844 29.630 0.00 0.00 39.20 3.91
456 499 9.002600 GGTCAAAAATGGATTTTATTCTGCTTT 57.997 29.630 0.00 0.00 39.20 3.51
514 557 5.070001 ACAAAAGTAGTAGCAGCAATTGGA 58.930 37.500 7.72 0.00 0.00 3.53
516 559 3.268023 AGTAGTAGCAGCAATTGGACC 57.732 47.619 7.72 0.00 0.00 4.46
568 611 4.750098 CCATACTCGGCATCTTACGAAATT 59.250 41.667 0.00 0.00 38.79 1.82
573 616 2.601314 CGGCATCTTACGAAATTCGACA 59.399 45.455 22.92 6.38 43.74 4.35
577 620 5.290158 GGCATCTTACGAAATTCGACAAGTA 59.710 40.000 22.92 13.17 43.74 2.24
591 634 5.291971 TCGACAAGTACTCCTGGTTAAAAC 58.708 41.667 0.00 0.00 0.00 2.43
640 686 3.134458 GCTACACTCTTGAGTTTGTGCT 58.866 45.455 0.00 0.00 34.14 4.40
641 687 3.059325 GCTACACTCTTGAGTTTGTGCTG 60.059 47.826 0.00 0.00 34.14 4.41
642 688 1.672881 ACACTCTTGAGTTTGTGCTGC 59.327 47.619 0.00 0.00 34.14 5.25
671 717 1.251251 CTTTTGTCAAGGAGCTGGGG 58.749 55.000 0.00 0.00 0.00 4.96
747 793 3.632189 GAACAGGTTCAGTTCATGTTGC 58.368 45.455 7.27 0.00 43.64 4.17
770 816 3.795488 GCAAACACCTTTTCTGTAGTGCC 60.795 47.826 0.00 0.00 33.46 5.01
794 840 3.382546 CCATAAAAGCCTTGTCCCATCAG 59.617 47.826 0.00 0.00 0.00 2.90
795 841 1.260544 AAAAGCCTTGTCCCATCAGC 58.739 50.000 0.00 0.00 0.00 4.26
796 842 0.112995 AAAGCCTTGTCCCATCAGCA 59.887 50.000 0.00 0.00 0.00 4.41
806 852 0.815734 CCCATCAGCAGCTTTCCTTG 59.184 55.000 0.00 0.00 0.00 3.61
809 855 1.476891 CATCAGCAGCTTTCCTTGCAT 59.523 47.619 0.00 0.00 0.00 3.96
811 857 3.008835 TCAGCAGCTTTCCTTGCATAT 57.991 42.857 0.00 0.00 0.00 1.78
828 874 1.971505 TATGGCTTCAGACCGGCAGG 61.972 60.000 0.00 0.00 45.13 4.85
939 1006 5.045872 GCTTACCATTTCCTTGCATGATTC 58.954 41.667 0.00 0.00 0.00 2.52
976 1043 2.322355 CAGGATCCTGTGGCTTACTG 57.678 55.000 30.55 4.78 39.10 2.74
977 1044 1.134280 CAGGATCCTGTGGCTTACTGG 60.134 57.143 30.55 3.28 46.60 4.00
978 1045 0.464554 GGATCCTGTGGCTTACTGGC 60.465 60.000 3.84 0.00 45.30 4.85
979 1046 0.543749 GATCCTGTGGCTTACTGGCT 59.456 55.000 10.99 3.99 45.30 4.75
1010 1081 3.498481 CCAAACGGGATCATGGTATGGAT 60.498 47.826 0.00 0.00 40.01 3.41
1018 1089 6.577039 CGGGATCATGGTATGGATACTTCAAT 60.577 42.308 0.00 0.00 33.81 2.57
1062 1137 5.466393 ACATTTGGCAAGTTGCTTAATTCAC 59.534 36.000 26.16 8.50 44.28 3.18
1066 1141 3.983344 GGCAAGTTGCTTAATTCACACTG 59.017 43.478 26.16 0.00 44.28 3.66
1075 1150 4.379499 GCTTAATTCACACTGGTTGCCTAC 60.379 45.833 0.00 0.00 0.00 3.18
1119 1198 4.101448 CCTGCCGGAGAGGGGTTG 62.101 72.222 5.05 0.00 41.48 3.77
1451 1548 3.128938 AGACAACTAGGACACATACTCGC 59.871 47.826 0.00 0.00 0.00 5.03
1484 1582 6.544928 ACCAAATTATGTTGAAATCCCTCC 57.455 37.500 0.00 0.00 0.00 4.30
1500 1608 3.054361 TCCCTCCAATTCAGTTAAGCTCC 60.054 47.826 0.00 0.00 0.00 4.70
1508 1616 6.547141 CCAATTCAGTTAAGCTCCATGGAATA 59.453 38.462 17.00 6.68 0.00 1.75
1520 1628 6.096001 AGCTCCATGGAATATTGTCAACTTTC 59.904 38.462 17.00 0.00 0.00 2.62
1548 1662 3.234630 TTTCGGCTAGCTGCACCGT 62.235 57.895 19.27 0.00 46.92 4.83
1587 1701 1.199097 CGCAAATACGGCCTGAGTTTT 59.801 47.619 0.00 0.00 0.00 2.43
1606 1720 2.310779 TGGACTAGTCAGCTTCCACT 57.689 50.000 23.91 0.00 0.00 4.00
1612 1726 3.834813 ACTAGTCAGCTTCCACTTCATCA 59.165 43.478 0.00 0.00 0.00 3.07
1636 1750 3.743714 CATGGGTCCACCTTGTCAA 57.256 52.632 0.00 0.00 39.07 3.18
1647 1761 3.256631 CCACCTTGTCAATTTGAGGGAAG 59.743 47.826 15.50 10.78 33.51 3.46
1651 1765 5.660864 ACCTTGTCAATTTGAGGGAAGAAAA 59.339 36.000 15.50 0.00 33.51 2.29
1743 1858 6.056884 AGGGTAAAATTGTCACAAAGTCGTA 58.943 36.000 0.00 0.00 0.00 3.43
1747 1862 7.375017 GGTAAAATTGTCACAAAGTCGTAACTG 59.625 37.037 0.00 0.00 35.36 3.16
1748 1863 5.418310 AATTGTCACAAAGTCGTAACTGG 57.582 39.130 0.00 0.00 35.36 4.00
1749 1864 3.804786 TGTCACAAAGTCGTAACTGGA 57.195 42.857 0.00 0.00 35.36 3.86
1750 1865 3.713288 TGTCACAAAGTCGTAACTGGAG 58.287 45.455 0.00 0.00 35.36 3.86
1751 1866 3.057734 GTCACAAAGTCGTAACTGGAGG 58.942 50.000 0.00 0.00 35.36 4.30
1752 1867 2.960384 TCACAAAGTCGTAACTGGAGGA 59.040 45.455 0.00 0.00 35.36 3.71
1753 1868 3.005472 TCACAAAGTCGTAACTGGAGGAG 59.995 47.826 0.00 0.00 35.36 3.69
1754 1869 2.299297 ACAAAGTCGTAACTGGAGGAGG 59.701 50.000 0.00 0.00 35.36 4.30
1755 1870 1.558233 AAGTCGTAACTGGAGGAGGG 58.442 55.000 0.00 0.00 35.36 4.30
1756 1871 0.324460 AGTCGTAACTGGAGGAGGGG 60.324 60.000 0.00 0.00 33.32 4.79
1757 1872 1.001248 TCGTAACTGGAGGAGGGGG 59.999 63.158 0.00 0.00 0.00 5.40
1842 1968 1.334869 GCACAGTCTTGGTTCCAACAG 59.665 52.381 0.00 0.00 0.00 3.16
1892 2018 8.059798 AGAAGTTTTGGTGATGATTTGATAGG 57.940 34.615 0.00 0.00 0.00 2.57
1899 2025 7.773489 TGGTGATGATTTGATAGGAAACAAA 57.227 32.000 0.00 0.00 39.67 2.83
1901 2027 8.814931 TGGTGATGATTTGATAGGAAACAAATT 58.185 29.630 0.00 0.00 43.62 1.82
1907 2036 8.522830 TGATTTGATAGGAAACAAATTCTCACC 58.477 33.333 0.00 0.00 43.62 4.02
1919 2048 2.479566 TTCTCACCTGCAGTTGGATC 57.520 50.000 11.72 0.00 0.00 3.36
1920 2049 1.649321 TCTCACCTGCAGTTGGATCT 58.351 50.000 11.72 0.00 0.00 2.75
1921 2050 1.277273 TCTCACCTGCAGTTGGATCTG 59.723 52.381 11.72 0.00 38.35 2.90
1942 2071 4.265893 TGTGTGCAGTTTTCTTTAGTGGA 58.734 39.130 0.00 0.00 0.00 4.02
1975 2104 5.303165 ACTACTAACCTTTCCCTTTTCACG 58.697 41.667 0.00 0.00 0.00 4.35
1978 2107 2.943036 ACCTTTCCCTTTTCACGCTA 57.057 45.000 0.00 0.00 0.00 4.26
2018 2149 4.517285 TCATTAGCAATCCTCTGGTCAAC 58.483 43.478 0.00 0.00 0.00 3.18
2028 2159 4.957296 TCCTCTGGTCAACTTAGTTCAAC 58.043 43.478 0.00 0.00 0.00 3.18
2116 2615 6.074676 GCAATGCGGTGAATCTTGAATATTTC 60.075 38.462 0.00 0.00 0.00 2.17
2161 2661 5.827267 TCATTGAACCTTGTTCTTGTCATGA 59.173 36.000 8.30 0.00 0.00 3.07
2168 2668 8.408043 AACCTTGTTCTTGTCATGATATGAAA 57.592 30.769 18.31 7.13 41.69 2.69
2169 2669 7.820648 ACCTTGTTCTTGTCATGATATGAAAC 58.179 34.615 18.31 13.90 41.69 2.78
2170 2670 7.448161 ACCTTGTTCTTGTCATGATATGAAACA 59.552 33.333 18.31 15.60 41.69 2.83
2171 2671 8.464404 CCTTGTTCTTGTCATGATATGAAACAT 58.536 33.333 18.31 0.00 41.69 2.71
2172 2672 9.285770 CTTGTTCTTGTCATGATATGAAACATG 57.714 33.333 18.31 15.69 41.69 3.21
2190 2694 8.465999 TGAAACATGAAAGTTGAAAGAAGCTAA 58.534 29.630 0.00 0.00 0.00 3.09
2197 2701 6.625873 AAGTTGAAAGAAGCTAACCTCTTG 57.374 37.500 0.00 0.00 0.00 3.02
2223 2727 8.202137 GCCTGTCTTTGAACCTTATATAGTACA 58.798 37.037 0.00 0.00 0.00 2.90
2245 2749 7.176589 ACAAGAAGATACTCCCTCTGTAAAG 57.823 40.000 0.00 0.00 0.00 1.85
2246 2750 6.954684 ACAAGAAGATACTCCCTCTGTAAAGA 59.045 38.462 0.00 0.00 0.00 2.52
2261 2765 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2316 2820 8.537728 TTATATTTCTTTACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
2317 2821 5.952347 ATTTCTTTACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
2318 2822 4.730949 TTCTTTACGGAGGGAGTACATG 57.269 45.455 0.00 0.00 0.00 3.21
2319 2823 3.028850 TCTTTACGGAGGGAGTACATGG 58.971 50.000 0.00 0.00 0.00 3.66
2320 2824 1.117150 TTACGGAGGGAGTACATGGC 58.883 55.000 0.00 0.00 0.00 4.40
2325 2920 2.618045 CGGAGGGAGTACATGGCTTTTT 60.618 50.000 0.00 0.00 0.00 1.94
2356 2951 9.905713 AAATGAATCCTTAATGAGCTGTAAGTA 57.094 29.630 0.00 0.00 35.30 2.24
2389 2984 9.542462 TTCGACCTAGAAATCAAATAATCGATT 57.458 29.630 16.15 16.15 35.11 3.34
2411 3006 8.671921 CGATTGTAACTACTCCTACTTGAGTTA 58.328 37.037 0.00 0.00 42.92 2.24
2509 3108 8.877195 TCTGTTTATTGTCTACTTAACCCTCTT 58.123 33.333 0.00 0.00 0.00 2.85
2629 3228 5.839063 ACTATCTCGAATCCCAAGATACCAA 59.161 40.000 0.00 0.00 32.25 3.67
2669 3268 6.226052 GCCAAACAAGAGAAAAATTGAGGAT 58.774 36.000 0.00 0.00 0.00 3.24
2769 3369 9.539825 ACATATTAAACATCTTCTGTCAGCTAG 57.460 33.333 0.00 0.00 36.98 3.42
2831 3432 4.058124 GGTGTTTTCTTTTTGAGGGATGC 58.942 43.478 0.00 0.00 0.00 3.91
2840 3441 2.627515 TTGAGGGATGCTGCAGATAC 57.372 50.000 20.43 8.83 0.00 2.24
2849 3450 0.035056 GCTGCAGATACAAGGGTGGT 60.035 55.000 20.43 0.00 0.00 4.16
2854 3455 2.355716 GCAGATACAAGGGTGGTTGCTA 60.356 50.000 0.00 0.00 0.00 3.49
2886 3487 9.349713 TGGGTTTACCTAATTATGCATCTAAAG 57.650 33.333 0.19 0.00 41.11 1.85
2900 3501 7.807977 TGCATCTAAAGAAAATCATACTCCC 57.192 36.000 0.00 0.00 0.00 4.30
2901 3502 7.577303 TGCATCTAAAGAAAATCATACTCCCT 58.423 34.615 0.00 0.00 0.00 4.20
2903 3504 7.716998 GCATCTAAAGAAAATCATACTCCCTCA 59.283 37.037 0.00 0.00 0.00 3.86
2904 3505 9.270640 CATCTAAAGAAAATCATACTCCCTCAG 57.729 37.037 0.00 0.00 0.00 3.35
2905 3506 8.380742 TCTAAAGAAAATCATACTCCCTCAGT 57.619 34.615 0.00 0.00 39.41 3.41
2906 3507 8.826765 TCTAAAGAAAATCATACTCCCTCAGTT 58.173 33.333 0.00 0.00 36.43 3.16
2907 3508 9.454859 CTAAAGAAAATCATACTCCCTCAGTTT 57.545 33.333 0.00 0.00 36.43 2.66
2908 3509 8.712228 AAAGAAAATCATACTCCCTCAGTTTT 57.288 30.769 0.00 0.00 36.43 2.43
2909 3510 8.712228 AAGAAAATCATACTCCCTCAGTTTTT 57.288 30.769 0.00 0.00 36.43 1.94
2910 3511 8.115490 AGAAAATCATACTCCCTCAGTTTTTG 57.885 34.615 0.00 0.00 36.43 2.44
2911 3512 5.904362 AATCATACTCCCTCAGTTTTTGC 57.096 39.130 0.00 0.00 36.43 3.68
2912 3513 4.365514 TCATACTCCCTCAGTTTTTGCA 57.634 40.909 0.00 0.00 36.43 4.08
2913 3514 4.922206 TCATACTCCCTCAGTTTTTGCAT 58.078 39.130 0.00 0.00 36.43 3.96
2914 3515 6.061022 TCATACTCCCTCAGTTTTTGCATA 57.939 37.500 0.00 0.00 36.43 3.14
2915 3516 5.880332 TCATACTCCCTCAGTTTTTGCATAC 59.120 40.000 0.00 0.00 36.43 2.39
2916 3517 3.074412 ACTCCCTCAGTTTTTGCATACG 58.926 45.455 0.00 0.00 26.56 3.06
2917 3518 2.420022 CTCCCTCAGTTTTTGCATACGG 59.580 50.000 0.00 0.00 0.00 4.02
2918 3519 2.039216 TCCCTCAGTTTTTGCATACGGA 59.961 45.455 0.00 0.00 0.00 4.69
2919 3520 2.420022 CCCTCAGTTTTTGCATACGGAG 59.580 50.000 13.51 13.51 36.67 4.63
2920 3521 3.334691 CCTCAGTTTTTGCATACGGAGA 58.665 45.455 18.77 2.32 38.38 3.71
2921 3522 3.751175 CCTCAGTTTTTGCATACGGAGAA 59.249 43.478 18.77 0.00 38.38 2.87
2922 3523 4.215399 CCTCAGTTTTTGCATACGGAGAAA 59.785 41.667 18.77 0.74 38.38 2.52
2923 3524 5.278266 CCTCAGTTTTTGCATACGGAGAAAA 60.278 40.000 18.77 6.12 38.38 2.29
2924 3525 6.137794 TCAGTTTTTGCATACGGAGAAAAA 57.862 33.333 0.00 0.00 0.00 1.94
2925 3526 6.744112 TCAGTTTTTGCATACGGAGAAAAAT 58.256 32.000 0.00 0.00 31.80 1.82
2926 3527 6.640499 TCAGTTTTTGCATACGGAGAAAAATG 59.360 34.615 10.22 10.22 36.92 2.32
2927 3528 6.640499 CAGTTTTTGCATACGGAGAAAAATGA 59.360 34.615 10.75 0.00 37.42 2.57
2928 3529 6.863126 AGTTTTTGCATACGGAGAAAAATGAG 59.137 34.615 0.00 0.00 31.80 2.90
2929 3530 5.957842 TTTGCATACGGAGAAAAATGAGT 57.042 34.783 0.00 0.00 0.00 3.41
2930 3531 4.944962 TGCATACGGAGAAAAATGAGTG 57.055 40.909 0.00 0.00 0.00 3.51
2931 3532 4.574892 TGCATACGGAGAAAAATGAGTGA 58.425 39.130 0.00 0.00 0.00 3.41
2932 3533 5.000591 TGCATACGGAGAAAAATGAGTGAA 58.999 37.500 0.00 0.00 0.00 3.18
2933 3534 5.647658 TGCATACGGAGAAAAATGAGTGAAT 59.352 36.000 0.00 0.00 0.00 2.57
2934 3535 6.183360 TGCATACGGAGAAAAATGAGTGAATC 60.183 38.462 0.00 0.00 0.00 2.52
2935 3536 6.037610 GCATACGGAGAAAAATGAGTGAATCT 59.962 38.462 0.00 0.00 0.00 2.40
2936 3537 7.224753 GCATACGGAGAAAAATGAGTGAATCTA 59.775 37.037 0.00 0.00 0.00 1.98
2937 3538 6.969828 ACGGAGAAAAATGAGTGAATCTAC 57.030 37.500 0.00 0.00 0.00 2.59
2938 3539 6.464222 ACGGAGAAAAATGAGTGAATCTACA 58.536 36.000 0.00 0.00 0.00 2.74
2939 3540 6.369065 ACGGAGAAAAATGAGTGAATCTACAC 59.631 38.462 0.00 0.00 40.60 2.90
2980 3581 5.117355 ACATCCGTATGTAGTCCGTATTG 57.883 43.478 0.00 0.00 44.66 1.90
2981 3582 4.823442 ACATCCGTATGTAGTCCGTATTGA 59.177 41.667 0.00 0.00 44.66 2.57
2982 3583 5.300034 ACATCCGTATGTAGTCCGTATTGAA 59.700 40.000 0.00 0.00 44.66 2.69
2983 3584 5.833406 TCCGTATGTAGTCCGTATTGAAA 57.167 39.130 0.00 0.00 0.00 2.69
2984 3585 6.395426 TCCGTATGTAGTCCGTATTGAAAT 57.605 37.500 0.00 0.00 0.00 2.17
2985 3586 6.441274 TCCGTATGTAGTCCGTATTGAAATC 58.559 40.000 0.00 0.00 0.00 2.17
2986 3587 6.263842 TCCGTATGTAGTCCGTATTGAAATCT 59.736 38.462 0.00 0.00 0.00 2.40
2987 3588 6.581542 CCGTATGTAGTCCGTATTGAAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
2988 3589 7.361127 CGTATGTAGTCCGTATTGAAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
2989 3590 8.501580 CGTATGTAGTCCGTATTGAAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
2993 3594 9.582431 TGTAGTCCGTATTGAAATCTCTAAAAG 57.418 33.333 0.00 0.00 0.00 2.27
2994 3595 9.032420 GTAGTCCGTATTGAAATCTCTAAAAGG 57.968 37.037 0.00 0.00 0.00 3.11
2995 3596 7.048512 AGTCCGTATTGAAATCTCTAAAAGGG 58.951 38.462 0.00 0.00 0.00 3.95
2996 3597 5.820947 TCCGTATTGAAATCTCTAAAAGGGC 59.179 40.000 0.00 0.00 0.00 5.19
2997 3598 5.823045 CCGTATTGAAATCTCTAAAAGGGCT 59.177 40.000 0.00 0.00 0.00 5.19
2998 3599 6.318900 CCGTATTGAAATCTCTAAAAGGGCTT 59.681 38.462 0.00 0.00 0.00 4.35
2999 3600 7.497909 CCGTATTGAAATCTCTAAAAGGGCTTA 59.502 37.037 0.00 0.00 0.00 3.09
3000 3601 9.057089 CGTATTGAAATCTCTAAAAGGGCTTAT 57.943 33.333 0.00 0.00 0.00 1.73
3004 3605 9.614792 TTGAAATCTCTAAAAGGGCTTATACTC 57.385 33.333 0.00 0.00 0.00 2.59
3005 3606 8.211629 TGAAATCTCTAAAAGGGCTTATACTCC 58.788 37.037 0.00 0.00 0.00 3.85
3006 3607 6.689663 ATCTCTAAAAGGGCTTATACTCCC 57.310 41.667 1.04 1.04 42.94 4.30
3011 3612 3.144613 GGGCTTATACTCCCTCCGT 57.855 57.895 1.98 0.00 39.46 4.69
3012 3613 0.967662 GGGCTTATACTCCCTCCGTC 59.032 60.000 1.98 0.00 39.46 4.79
3013 3614 0.967662 GGCTTATACTCCCTCCGTCC 59.032 60.000 0.00 0.00 0.00 4.79
3014 3615 0.597072 GCTTATACTCCCTCCGTCCG 59.403 60.000 0.00 0.00 0.00 4.79
3015 3616 1.245732 CTTATACTCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
3016 3617 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
3017 3618 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3018 3619 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3019 3620 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3020 3621 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3021 3622 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3022 3623 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3023 3624 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3024 3625 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3025 3626 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3026 3627 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3027 3628 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3028 3629 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3029 3630 1.648504 GTCCGGAAATACTTGTCGGG 58.351 55.000 5.23 0.00 40.92 5.14
3030 3631 0.538118 TCCGGAAATACTTGTCGGGG 59.462 55.000 0.00 0.00 40.92 5.73
3031 3632 0.538118 CCGGAAATACTTGTCGGGGA 59.462 55.000 0.00 0.00 37.35 4.81
3032 3633 1.065998 CCGGAAATACTTGTCGGGGAA 60.066 52.381 0.00 0.00 37.35 3.97
3033 3634 2.616001 CCGGAAATACTTGTCGGGGAAA 60.616 50.000 0.00 0.00 37.35 3.13
3034 3635 3.275999 CGGAAATACTTGTCGGGGAAAT 58.724 45.455 0.00 0.00 0.00 2.17
3035 3636 3.064820 CGGAAATACTTGTCGGGGAAATG 59.935 47.826 0.00 0.00 0.00 2.32
3036 3637 3.380320 GGAAATACTTGTCGGGGAAATGG 59.620 47.826 0.00 0.00 0.00 3.16
3037 3638 4.266714 GAAATACTTGTCGGGGAAATGGA 58.733 43.478 0.00 0.00 0.00 3.41
3038 3639 4.519906 AATACTTGTCGGGGAAATGGAT 57.480 40.909 0.00 0.00 0.00 3.41
3039 3640 2.128771 ACTTGTCGGGGAAATGGATG 57.871 50.000 0.00 0.00 0.00 3.51
3040 3641 1.633432 ACTTGTCGGGGAAATGGATGA 59.367 47.619 0.00 0.00 0.00 2.92
3041 3642 2.041081 ACTTGTCGGGGAAATGGATGAA 59.959 45.455 0.00 0.00 0.00 2.57
3042 3643 3.290710 CTTGTCGGGGAAATGGATGAAT 58.709 45.455 0.00 0.00 0.00 2.57
3043 3644 2.930950 TGTCGGGGAAATGGATGAATC 58.069 47.619 0.00 0.00 0.00 2.52
3044 3645 2.509548 TGTCGGGGAAATGGATGAATCT 59.490 45.455 0.00 0.00 0.00 2.40
3045 3646 3.714280 TGTCGGGGAAATGGATGAATCTA 59.286 43.478 0.00 0.00 0.00 1.98
3046 3647 4.202357 TGTCGGGGAAATGGATGAATCTAG 60.202 45.833 0.00 0.00 0.00 2.43
3047 3648 4.040461 GTCGGGGAAATGGATGAATCTAGA 59.960 45.833 0.00 0.00 0.00 2.43
3048 3649 4.040461 TCGGGGAAATGGATGAATCTAGAC 59.960 45.833 0.00 0.00 0.00 2.59
3049 3650 4.319177 GGGGAAATGGATGAATCTAGACG 58.681 47.826 0.00 0.00 0.00 4.18
3050 3651 4.202367 GGGGAAATGGATGAATCTAGACGT 60.202 45.833 0.00 0.00 0.00 4.34
3051 3652 5.011738 GGGGAAATGGATGAATCTAGACGTA 59.988 44.000 0.00 0.00 0.00 3.57
3052 3653 6.295916 GGGGAAATGGATGAATCTAGACGTAT 60.296 42.308 0.00 0.00 0.00 3.06
3053 3654 7.162082 GGGAAATGGATGAATCTAGACGTATT 58.838 38.462 0.00 0.00 0.00 1.89
3054 3655 7.661847 GGGAAATGGATGAATCTAGACGTATTT 59.338 37.037 0.00 0.00 0.00 1.40
3055 3656 9.057089 GGAAATGGATGAATCTAGACGTATTTT 57.943 33.333 0.00 0.00 0.00 1.82
3087 3688 8.503428 AGATACATCCAGTTTTATCCATCTCT 57.497 34.615 0.00 0.00 0.00 3.10
3088 3689 8.943085 AGATACATCCAGTTTTATCCATCTCTT 58.057 33.333 0.00 0.00 0.00 2.85
3089 3690 9.566432 GATACATCCAGTTTTATCCATCTCTTT 57.434 33.333 0.00 0.00 0.00 2.52
3090 3691 7.636150 ACATCCAGTTTTATCCATCTCTTTG 57.364 36.000 0.00 0.00 0.00 2.77
3091 3692 7.405292 ACATCCAGTTTTATCCATCTCTTTGA 58.595 34.615 0.00 0.00 0.00 2.69
3092 3693 7.337942 ACATCCAGTTTTATCCATCTCTTTGAC 59.662 37.037 0.00 0.00 0.00 3.18
3093 3694 6.778821 TCCAGTTTTATCCATCTCTTTGACA 58.221 36.000 0.00 0.00 0.00 3.58
3094 3695 7.230747 TCCAGTTTTATCCATCTCTTTGACAA 58.769 34.615 0.00 0.00 0.00 3.18
3095 3696 7.391554 TCCAGTTTTATCCATCTCTTTGACAAG 59.608 37.037 0.00 0.00 0.00 3.16
3096 3697 7.175641 CCAGTTTTATCCATCTCTTTGACAAGT 59.824 37.037 0.00 0.00 0.00 3.16
3097 3698 9.219603 CAGTTTTATCCATCTCTTTGACAAGTA 57.780 33.333 0.00 0.00 0.00 2.24
3098 3699 9.965902 AGTTTTATCCATCTCTTTGACAAGTAT 57.034 29.630 0.00 0.00 0.00 2.12
3103 3704 7.452880 TCCATCTCTTTGACAAGTATTTTGG 57.547 36.000 0.00 0.00 0.00 3.28
3104 3705 6.434028 TCCATCTCTTTGACAAGTATTTTGGG 59.566 38.462 0.00 0.00 0.00 4.12
3105 3706 6.434028 CCATCTCTTTGACAAGTATTTTGGGA 59.566 38.462 0.00 0.00 0.00 4.37
3106 3707 6.877611 TCTCTTTGACAAGTATTTTGGGAC 57.122 37.500 0.00 0.00 0.00 4.46
3107 3708 5.468746 TCTCTTTGACAAGTATTTTGGGACG 59.531 40.000 0.00 0.00 0.00 4.79
3108 3709 4.517453 TCTTTGACAAGTATTTTGGGACGG 59.483 41.667 0.00 0.00 0.00 4.79
3109 3710 3.773418 TGACAAGTATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
3110 3711 3.670625 TGACAAGTATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
3111 3712 3.007635 GACAAGTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3112 3713 2.374170 ACAAGTATTTTGGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
3113 3714 3.583966 ACAAGTATTTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
3114 3715 4.189231 CAAGTATTTTGGGACGGAGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
3115 3716 3.447950 AGTATTTTGGGACGGAGGTAGT 58.552 45.455 0.00 0.00 0.00 2.73
3116 3717 4.613437 AGTATTTTGGGACGGAGGTAGTA 58.387 43.478 0.00 0.00 0.00 1.82
3117 3718 3.900966 ATTTTGGGACGGAGGTAGTAC 57.099 47.619 0.00 0.00 0.00 2.73
3118 3719 2.307496 TTTGGGACGGAGGTAGTACA 57.693 50.000 2.06 0.00 0.00 2.90
3119 3720 2.537633 TTGGGACGGAGGTAGTACAT 57.462 50.000 2.06 0.00 0.00 2.29
3120 3721 1.771565 TGGGACGGAGGTAGTACATG 58.228 55.000 2.06 0.00 0.00 3.21
3121 3722 1.006281 TGGGACGGAGGTAGTACATGT 59.994 52.381 2.69 2.69 0.00 3.21
3122 3723 1.407979 GGGACGGAGGTAGTACATGTG 59.592 57.143 9.11 0.00 0.00 3.21
3123 3724 1.407979 GGACGGAGGTAGTACATGTGG 59.592 57.143 9.11 0.00 0.00 4.17
3142 3743 6.435430 TGTGGATCATGTTATAACACAAGC 57.565 37.500 20.26 13.34 42.51 4.01
3155 3756 4.616181 AACACAAGCGCCTATGAAATAC 57.384 40.909 2.29 0.00 0.00 1.89
3166 3767 6.149474 GCGCCTATGAAATACCATACAGAAAT 59.851 38.462 0.00 0.00 0.00 2.17
3212 3908 7.683676 CACGAAAAAGACAAAATGTTTGACTTG 59.316 33.333 15.59 8.42 35.34 3.16
3223 3919 7.961325 AAATGTTTGACTTGTTGTTTGAACT 57.039 28.000 0.00 0.00 0.00 3.01
3283 3979 7.358352 GGACAAACTTTCTCGTATTTTTGCATG 60.358 37.037 0.00 0.00 0.00 4.06
3286 3982 8.538856 CAAACTTTCTCGTATTTTTGCATGAAA 58.461 29.630 0.00 0.00 0.00 2.69
3317 4013 9.387257 TCAGGTATTCATGTTATATCATCATGC 57.613 33.333 0.00 0.00 38.82 4.06
3395 4149 5.734855 TCTAGGATAGCGCAAAAATGTTC 57.265 39.130 11.47 0.00 38.99 3.18
3495 4249 3.643763 GAACCATACAGAGATAGGTGCG 58.356 50.000 0.00 0.00 31.86 5.34
3553 4307 6.030228 ACGACAGAGAAAAAGCAAAAGAAAG 58.970 36.000 0.00 0.00 0.00 2.62
3594 4348 4.027572 TCAACAAAAACGAAGAAGCCTG 57.972 40.909 0.00 0.00 0.00 4.85
3636 4390 2.327325 TCTTCCACTAGGCTCCAAGT 57.673 50.000 0.00 0.00 33.74 3.16
4912 5671 4.475135 GAGCGGGCCTCCCTGTTC 62.475 72.222 0.84 0.00 42.67 3.18
4914 5673 4.785453 GCGGGCCTCCCTGTTCAG 62.785 72.222 0.84 0.00 42.67 3.02
4915 5674 4.785453 CGGGCCTCCCTGTTCAGC 62.785 72.222 0.84 0.00 42.67 4.26
4916 5675 3.650950 GGGCCTCCCTGTTCAGCA 61.651 66.667 0.84 0.00 41.34 4.41
4917 5676 2.436109 GGCCTCCCTGTTCAGCAA 59.564 61.111 0.00 0.00 0.00 3.91
4918 5677 1.228552 GGCCTCCCTGTTCAGCAAA 60.229 57.895 0.00 0.00 0.00 3.68
4919 5678 0.827507 GGCCTCCCTGTTCAGCAAAA 60.828 55.000 0.00 0.00 0.00 2.44
4920 5679 1.260544 GCCTCCCTGTTCAGCAAAAT 58.739 50.000 0.00 0.00 0.00 1.82
4921 5680 1.620323 GCCTCCCTGTTCAGCAAAATT 59.380 47.619 0.00 0.00 0.00 1.82
4922 5681 2.037641 GCCTCCCTGTTCAGCAAAATTT 59.962 45.455 0.00 0.00 0.00 1.82
4923 5682 3.656559 CCTCCCTGTTCAGCAAAATTTG 58.343 45.455 0.57 0.57 0.00 2.32
4924 5683 3.555586 CCTCCCTGTTCAGCAAAATTTGG 60.556 47.826 7.89 0.00 0.00 3.28
4925 5684 3.037549 TCCCTGTTCAGCAAAATTTGGT 58.962 40.909 4.40 4.40 43.12 3.67
4926 5685 3.454082 TCCCTGTTCAGCAAAATTTGGTT 59.546 39.130 7.77 0.00 39.79 3.67
4927 5686 3.809279 CCCTGTTCAGCAAAATTTGGTTC 59.191 43.478 7.77 3.17 39.79 3.62
4928 5687 4.440880 CCTGTTCAGCAAAATTTGGTTCA 58.559 39.130 7.77 7.22 39.79 3.18
4929 5688 5.058490 CCTGTTCAGCAAAATTTGGTTCAT 58.942 37.500 7.77 0.00 39.79 2.57
4930 5689 6.222389 CCTGTTCAGCAAAATTTGGTTCATA 58.778 36.000 7.77 0.00 39.79 2.15
4931 5690 6.705381 CCTGTTCAGCAAAATTTGGTTCATAA 59.295 34.615 7.77 0.00 39.79 1.90
4932 5691 7.307337 CCTGTTCAGCAAAATTTGGTTCATAAC 60.307 37.037 7.77 10.34 39.79 1.89
4950 5709 8.548721 GTTCATAACCTATAATTTCCTGACACG 58.451 37.037 0.00 0.00 0.00 4.49
4964 5723 4.020928 TCCTGACACGCCTACAAAATTCTA 60.021 41.667 0.00 0.00 0.00 2.10
4997 5757 0.610509 AACATGCCGTGCCCATTGTA 60.611 50.000 0.00 0.00 0.00 2.41
5004 5764 1.679153 CCGTGCCCATTGTATTTACCC 59.321 52.381 0.00 0.00 0.00 3.69
5011 5771 4.500716 GCCCATTGTATTTACCCGAAATGG 60.501 45.833 5.44 5.44 42.34 3.16
5022 5782 0.813210 CCGAAATGGCAGGAGCTCTC 60.813 60.000 14.64 3.76 41.70 3.20
5023 5783 0.177604 CGAAATGGCAGGAGCTCTCT 59.822 55.000 14.64 6.28 41.70 3.10
5024 5784 1.666054 GAAATGGCAGGAGCTCTCTG 58.334 55.000 21.31 21.31 41.70 3.35
5056 5816 9.869757 GCATTAAAGGTAAGGAATGTACAAAAT 57.130 29.630 0.00 0.00 32.89 1.82
5090 5862 2.094078 GCCAATCCACATTAGCAGCAAA 60.094 45.455 0.00 0.00 0.00 3.68
5105 5877 4.884164 AGCAGCAAACTAAAGGGATACATC 59.116 41.667 0.00 0.00 39.74 3.06
5120 5892 9.877178 AAGGGATACATCGATTAATTCTATGTC 57.123 33.333 12.04 3.40 39.33 3.06
5121 5893 9.035890 AGGGATACATCGATTAATTCTATGTCA 57.964 33.333 12.04 4.04 39.33 3.58
5166 5938 4.741928 AGGGGTGTGAAAAGTCCTAATT 57.258 40.909 0.00 0.00 0.00 1.40
5179 5951 9.914131 GAAAAGTCCTAATTGCTGAACTAATTT 57.086 29.630 0.00 0.00 0.00 1.82
5181 5953 9.696917 AAAGTCCTAATTGCTGAACTAATTTTG 57.303 29.630 0.00 0.00 0.00 2.44
5182 5954 8.635765 AGTCCTAATTGCTGAACTAATTTTGA 57.364 30.769 0.00 0.00 0.00 2.69
5183 5955 9.077885 AGTCCTAATTGCTGAACTAATTTTGAA 57.922 29.630 0.00 0.00 0.00 2.69
5221 5993 4.320546 TGGATTGTCAAATCTGGATGGT 57.679 40.909 0.00 0.00 41.74 3.55
5226 5998 6.127253 GGATTGTCAAATCTGGATGGTCAAAT 60.127 38.462 0.00 0.00 41.74 2.32
5288 6061 9.729281 ATGTCTCAACAATATGATATATGCACA 57.271 29.630 0.00 0.00 39.30 4.57
5302 6075 1.921982 TGCACATAATGGGTTGCAGT 58.078 45.000 0.00 0.00 0.00 4.40
5303 6076 1.818060 TGCACATAATGGGTTGCAGTC 59.182 47.619 0.00 0.00 0.00 3.51
5305 6078 1.094785 ACATAATGGGTTGCAGTCGC 58.905 50.000 0.00 0.00 39.24 5.19
5306 6079 0.381801 CATAATGGGTTGCAGTCGCC 59.618 55.000 0.00 0.00 37.32 5.54
5307 6080 0.751643 ATAATGGGTTGCAGTCGCCC 60.752 55.000 9.82 9.82 42.64 6.13
5357 6146 9.899661 ATAAGTAACATCTTACTGGTTGCAATA 57.100 29.630 0.59 0.00 41.58 1.90
5359 6148 9.899661 AAGTAACATCTTACTGGTTGCAATATA 57.100 29.630 0.59 0.00 41.58 0.86
5367 6156 3.053693 ACTGGTTGCAATATAGAAGGGCA 60.054 43.478 0.59 0.00 0.00 5.36
5383 6172 0.747852 GGCAGGCCAGTAGTAGAGTC 59.252 60.000 5.01 0.00 35.81 3.36
5385 6174 1.679153 GCAGGCCAGTAGTAGAGTCTC 59.321 57.143 5.01 0.00 0.00 3.36
5397 6186 1.638529 AGAGTCTCTCCACTTGTGGG 58.361 55.000 18.45 10.16 0.00 4.61
5404 6193 2.034687 CCACTTGTGGGCTGGAGG 59.965 66.667 11.72 0.00 0.00 4.30
5456 6259 5.796424 ATTATTATGCAAGGGAAAGGCTG 57.204 39.130 0.00 0.00 0.00 4.85
5457 6260 2.603075 TTATGCAAGGGAAAGGCTGT 57.397 45.000 0.00 0.00 0.00 4.40
5538 6341 7.230849 TGCATCTGTGAATTACCAATTTTCT 57.769 32.000 0.00 0.00 0.00 2.52
5539 6342 8.347004 TGCATCTGTGAATTACCAATTTTCTA 57.653 30.769 0.00 0.00 0.00 2.10
5540 6343 8.243426 TGCATCTGTGAATTACCAATTTTCTAC 58.757 33.333 0.00 0.00 0.00 2.59
5541 6344 8.462016 GCATCTGTGAATTACCAATTTTCTACT 58.538 33.333 0.00 0.00 0.00 2.57
5542 6345 9.994432 CATCTGTGAATTACCAATTTTCTACTC 57.006 33.333 0.00 0.00 0.00 2.59
5543 6346 8.561738 TCTGTGAATTACCAATTTTCTACTCC 57.438 34.615 0.00 0.00 0.00 3.85
5544 6347 7.610305 TCTGTGAATTACCAATTTTCTACTCCC 59.390 37.037 0.00 0.00 0.00 4.30
5545 6348 7.466804 TGTGAATTACCAATTTTCTACTCCCT 58.533 34.615 0.00 0.00 0.00 4.20
5546 6349 7.610305 TGTGAATTACCAATTTTCTACTCCCTC 59.390 37.037 0.00 0.00 0.00 4.30
5547 6350 7.067129 GTGAATTACCAATTTTCTACTCCCTCC 59.933 40.741 0.00 0.00 0.00 4.30
5548 6351 3.629142 ACCAATTTTCTACTCCCTCCG 57.371 47.619 0.00 0.00 0.00 4.63
5549 6352 2.910977 ACCAATTTTCTACTCCCTCCGT 59.089 45.455 0.00 0.00 0.00 4.69
5550 6353 3.329814 ACCAATTTTCTACTCCCTCCGTT 59.670 43.478 0.00 0.00 0.00 4.44
5551 6354 3.939592 CCAATTTTCTACTCCCTCCGTTC 59.060 47.826 0.00 0.00 0.00 3.95
5552 6355 3.908643 ATTTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
5553 6356 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
5554 6357 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
5555 6358 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
5556 6359 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
5557 6360 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
5558 6361 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
5559 6362 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
5560 6363 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
5561 6364 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5562 6365 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5563 6366 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5564 6367 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
5565 6368 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
5566 6369 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
5567 6370 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
5568 6371 7.758076 CCCTCCGTTCCTAAATATTTGTTTTTC 59.242 37.037 11.05 0.00 0.00 2.29
5569 6372 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
5586 6389 9.787532 TTGTTTTTCTAGAGATTTCAACAAGTG 57.212 29.630 6.81 0.00 31.15 3.16
5587 6390 9.173021 TGTTTTTCTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
5588 6391 9.439537 GTTTTTCTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
5589 6392 8.964476 TTTTCTAGAGATTTCAACAAGTGACT 57.036 30.769 0.00 0.00 35.39 3.41
5591 6394 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5592 6395 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5593 6396 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5595 6398 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5596 6399 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5597 6400 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5598 6401 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5599 6402 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5600 6403 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5601 6404 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5602 6405 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5603 6406 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5604 6407 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5605 6408 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5606 6409 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5607 6410 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5608 6411 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
5609 6412 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
5610 6413 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
5611 6414 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
5612 6415 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
5613 6416 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
5614 6417 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
5615 6418 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
5616 6419 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
5617 6420 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
5618 6421 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
5619 6422 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
5620 6423 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
5621 6424 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
5622 6425 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
5623 6426 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
5652 6455 6.964807 TGTCTATATACAACCGTATGTGGT 57.035 37.500 0.96 0.00 46.67 4.16
5653 6456 8.640063 ATGTCTATATACAACCGTATGTGGTA 57.360 34.615 0.00 0.00 42.89 3.25
5654 6457 8.102800 TGTCTATATACAACCGTATGTGGTAG 57.897 38.462 0.96 1.87 42.89 3.18
5655 6458 7.720957 TGTCTATATACAACCGTATGTGGTAGT 59.279 37.037 0.96 0.00 42.89 2.73
5656 6459 8.233190 GTCTATATACAACCGTATGTGGTAGTC 58.767 40.741 0.96 0.00 42.89 2.59
5657 6460 4.660789 ATACAACCGTATGTGGTAGTCC 57.339 45.455 0.96 0.00 42.89 3.85
5658 6461 2.250031 ACAACCGTATGTGGTAGTCCA 58.750 47.619 0.00 0.00 42.89 4.02
5659 6462 2.835764 ACAACCGTATGTGGTAGTCCAT 59.164 45.455 0.00 0.00 46.20 3.41
5660 6463 3.262405 ACAACCGTATGTGGTAGTCCATT 59.738 43.478 0.00 0.00 46.20 3.16
5661 6464 4.258543 CAACCGTATGTGGTAGTCCATTT 58.741 43.478 0.00 0.00 46.20 2.32
5662 6465 3.869065 ACCGTATGTGGTAGTCCATTTG 58.131 45.455 0.00 0.00 46.20 2.32
5663 6466 3.516300 ACCGTATGTGGTAGTCCATTTGA 59.484 43.478 0.00 0.00 46.20 2.69
5664 6467 4.020039 ACCGTATGTGGTAGTCCATTTGAA 60.020 41.667 0.00 0.00 46.20 2.69
5665 6468 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
5666 6469 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
5667 6470 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
5668 6471 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
5669 6472 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
5670 6473 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5671 6474 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5672 6475 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5673 6476 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5674 6477 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5675 6478 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
5679 6482 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5680 6483 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
5697 6500 6.657836 AAGACAAATATTTAGGAACGGACG 57.342 37.500 0.00 0.00 0.00 4.79
5698 6501 5.114081 AGACAAATATTTAGGAACGGACGG 58.886 41.667 0.00 0.00 0.00 4.79
5699 6502 5.088680 ACAAATATTTAGGAACGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
5700 6503 5.490159 ACAAATATTTAGGAACGGACGGAA 58.510 37.500 0.00 0.00 0.00 4.30
5772 6575 7.448161 CCCATATTGACCTAAACATCAGCATTA 59.552 37.037 0.00 0.00 0.00 1.90
5869 6672 7.042335 CCCTCAGGTTTCTATTGTACTTACAG 58.958 42.308 0.00 0.00 37.52 2.74
5956 6761 7.715657 TGCACCATCTAATAGCCTTTATTTTG 58.284 34.615 0.00 0.00 0.00 2.44
5976 6781 5.925506 TTGAAATATACAGTCTGGACGGA 57.074 39.130 4.53 0.00 36.20 4.69
6154 6968 0.806868 ATTGCTGCACCTGTTCGATG 59.193 50.000 0.00 0.00 0.00 3.84
6185 6999 2.957402 TGACTGCACTGAAAAGGGAT 57.043 45.000 0.00 0.00 0.00 3.85
6272 7095 6.479660 CAGCAAAGCAAGTCAAAAATCCTAAA 59.520 34.615 0.00 0.00 0.00 1.85
6275 7098 7.619982 GCAAAGCAAGTCAAAAATCCTAAATCG 60.620 37.037 0.00 0.00 0.00 3.34
6281 7104 5.028375 GTCAAAAATCCTAAATCGAAGGCG 58.972 41.667 0.00 0.00 39.35 5.52
6282 7105 3.692791 AAAATCCTAAATCGAAGGCGC 57.307 42.857 0.00 0.00 37.46 6.53
6291 7114 0.250513 ATCGAAGGCGCTTTCCTCTT 59.749 50.000 24.45 10.24 34.82 2.85
6587 7410 2.152016 GTCCTTGACAACAACCTAGCC 58.848 52.381 0.00 0.00 32.09 3.93
6648 7471 4.114997 CCGTGCCGCCCAATTGTC 62.115 66.667 4.43 0.00 0.00 3.18
6665 7488 4.819105 TTGTCCGTCTTCCACTTATGAT 57.181 40.909 0.00 0.00 0.00 2.45
6668 7491 2.158957 TCCGTCTTCCACTTATGATGGC 60.159 50.000 0.00 0.00 37.13 4.40
6672 7495 2.698274 TCTTCCACTTATGATGGCGCTA 59.302 45.455 7.64 0.00 37.13 4.26
6696 7519 1.303317 AACCATGGCCAAGTCGACC 60.303 57.895 10.96 0.00 0.00 4.79
6724 7547 0.321741 CTGCCAATGCCAATGCCAAA 60.322 50.000 0.00 0.00 36.33 3.28
6837 7666 5.346270 AGAAGGAATCCTTAGTTCAGGTCT 58.654 41.667 15.48 1.34 44.82 3.85
6967 7800 5.480642 ACCCATCATATGCTAGACTTGAG 57.519 43.478 0.00 0.00 0.00 3.02
6985 7818 8.401709 AGACTTGAGAGAACTTTTGAATTTGTC 58.598 33.333 0.00 0.00 0.00 3.18
7016 7849 6.702282 AGTTGACTCAGTAGTAACTCTTTTGC 59.298 38.462 0.00 0.00 35.56 3.68
7018 7851 6.817184 TGACTCAGTAGTAACTCTTTTGCTT 58.183 36.000 0.00 0.00 35.56 3.91
7038 7871 3.888093 GCGGTTAGCGGATAGATGT 57.112 52.632 5.84 0.00 35.41 3.06
7057 7890 2.101750 TGTGCCGACAGTACAGAGAAAA 59.898 45.455 0.00 0.00 36.01 2.29
7090 7923 0.779997 ATGGCTGGGGTTTTCACTCT 59.220 50.000 0.00 0.00 0.00 3.24
7114 7951 1.080501 GCGAAAAGCCCCTTTCAGC 60.081 57.895 0.00 5.15 40.81 4.26
7115 7952 1.527433 GCGAAAAGCCCCTTTCAGCT 61.527 55.000 0.00 0.00 42.40 4.24
7120 7957 3.672066 AGCCCCTTTCAGCTTAACC 57.328 52.632 0.00 0.00 35.22 2.85
7121 7958 0.777446 AGCCCCTTTCAGCTTAACCA 59.223 50.000 0.00 0.00 35.22 3.67
7122 7959 1.359130 AGCCCCTTTCAGCTTAACCAT 59.641 47.619 0.00 0.00 35.22 3.55
7123 7960 1.478105 GCCCCTTTCAGCTTAACCATG 59.522 52.381 0.00 0.00 0.00 3.66
7124 7961 2.883888 GCCCCTTTCAGCTTAACCATGA 60.884 50.000 0.00 0.00 0.00 3.07
7175 8013 4.867086 ACTAAGTTATGGGTGGATTTGGG 58.133 43.478 0.00 0.00 0.00 4.12
7199 8037 3.664107 TCTGTGATTAGTGTCCTTGTGC 58.336 45.455 0.00 0.00 0.00 4.57
7206 8044 1.171308 AGTGTCCTTGTGCATGATGC 58.829 50.000 11.12 11.12 45.29 3.91
7236 8074 5.843673 ACAAATGTTGTTGTGATGTACCA 57.156 34.783 0.00 0.00 42.22 3.25
7307 8145 4.224433 GCATCTCATCTTGTGTTGTGTTG 58.776 43.478 0.00 0.00 0.00 3.33
7316 8154 4.517075 TCTTGTGTTGTGTTGTGTTTCTCA 59.483 37.500 0.00 0.00 0.00 3.27
7502 8343 6.674694 ATCAGATAGCTAAAGTGTTTGCTG 57.325 37.500 0.00 0.00 44.14 4.41
7609 8472 8.746922 TGTATTTGATGTGCTGAAAATCTTTC 57.253 30.769 0.00 0.00 0.00 2.62
7627 8490 5.508567 TCTTTCATTGGGCATGATCTTGTA 58.491 37.500 10.05 0.00 41.82 2.41
7639 8502 5.913514 GCATGATCTTGTAATGATGCAGAAC 59.086 40.000 10.05 0.00 43.25 3.01
7642 8505 6.175471 TGATCTTGTAATGATGCAGAACTGT 58.825 36.000 0.00 0.00 29.94 3.55
7670 8537 1.135489 CACATTGTCATCAGCACAGGC 60.135 52.381 0.00 0.00 41.61 4.85
7688 8555 1.541588 GGCACCCTGTCTGCTTAAAAG 59.458 52.381 0.00 0.00 34.84 2.27
7744 8611 1.417890 CGAGGCTTCCCAATGGAGTAT 59.582 52.381 0.00 0.00 43.07 2.12
7745 8612 2.808202 CGAGGCTTCCCAATGGAGTATG 60.808 54.545 0.00 0.00 43.07 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.427638 CCTTGAACAAGAGCATGAGCATG 60.428 47.826 14.99 6.11 40.79 4.06
30 31 2.753452 CCTTGAACAAGAGCATGAGCAT 59.247 45.455 14.99 0.00 40.79 3.79
31 32 2.156917 CCTTGAACAAGAGCATGAGCA 58.843 47.619 14.99 0.00 40.79 4.26
32 33 2.157738 ACCTTGAACAAGAGCATGAGC 58.842 47.619 14.99 0.00 40.79 4.26
33 34 3.373439 GCTACCTTGAACAAGAGCATGAG 59.627 47.826 14.99 5.11 40.79 2.90
34 35 3.244526 TGCTACCTTGAACAAGAGCATGA 60.245 43.478 19.60 5.35 40.83 3.07
91 94 9.826574 CAAATTACTACTAGTATTACCAAGCCA 57.173 33.333 2.33 0.00 29.64 4.75
92 95 9.828039 ACAAATTACTACTAGTATTACCAAGCC 57.172 33.333 2.33 0.00 29.64 4.35
96 99 8.685427 TCGCACAAATTACTACTAGTATTACCA 58.315 33.333 2.33 0.00 29.64 3.25
97 100 9.178427 CTCGCACAAATTACTACTAGTATTACC 57.822 37.037 2.33 0.00 29.64 2.85
98 101 9.178427 CCTCGCACAAATTACTACTAGTATTAC 57.822 37.037 2.33 0.00 29.64 1.89
100 103 7.779073 ACCTCGCACAAATTACTACTAGTATT 58.221 34.615 2.33 0.00 29.64 1.89
101 104 7.344095 ACCTCGCACAAATTACTACTAGTAT 57.656 36.000 2.33 0.00 29.64 2.12
104 115 6.237490 CGAAACCTCGCACAAATTACTACTAG 60.237 42.308 0.00 0.00 38.45 2.57
107 121 4.435121 CCGAAACCTCGCACAAATTACTAC 60.435 45.833 0.00 0.00 44.04 2.73
112 126 1.600023 TCCGAAACCTCGCACAAATT 58.400 45.000 0.00 0.00 44.04 1.82
113 127 1.737793 GATCCGAAACCTCGCACAAAT 59.262 47.619 0.00 0.00 44.04 2.32
120 134 2.474816 GAATCCAGATCCGAAACCTCG 58.525 52.381 0.00 0.00 45.02 4.63
128 142 1.202698 GGGTCTTGGAATCCAGATCCG 60.203 57.143 12.89 0.00 39.98 4.18
142 156 0.393077 CGAGGATATTGCGGGGTCTT 59.607 55.000 0.00 0.00 0.00 3.01
168 185 8.603181 CGATTTACTGATCATAATCACACACAA 58.397 33.333 18.01 0.00 36.98 3.33
175 192 8.437360 AGCAAACGATTTACTGATCATAATCA 57.563 30.769 18.01 0.00 39.63 2.57
176 193 9.374960 GAAGCAAACGATTTACTGATCATAATC 57.625 33.333 0.00 5.68 0.00 1.75
177 194 9.113838 AGAAGCAAACGATTTACTGATCATAAT 57.886 29.630 0.00 0.00 0.00 1.28
222 241 2.432444 CACTGGAAAGGATGGCGTTTA 58.568 47.619 0.00 0.00 32.71 2.01
266 288 3.957497 AGCTGAGCAATACTAGCACTACT 59.043 43.478 7.39 0.00 38.59 2.57
272 294 3.002144 GCAAAGAGCTGAGCAATACTAGC 59.998 47.826 7.39 5.16 41.15 3.42
302 324 1.847088 GAAAACTAGGCAGGGAGGGAT 59.153 52.381 0.00 0.00 0.00 3.85
317 339 2.156343 AGCTCTGACCACGAGAAAAC 57.844 50.000 0.00 0.00 0.00 2.43
340 362 2.559840 CAGCTCAAGGTTGCAGCG 59.440 61.111 0.00 0.00 36.84 5.18
345 367 2.485814 GGAAACTAGCAGCTCAAGGTTG 59.514 50.000 0.00 0.00 0.00 3.77
361 387 4.519350 CCTAGGAACTCTTGTTTGGGAAAC 59.481 45.833 1.05 0.00 41.75 2.78
363 389 3.720002 ACCTAGGAACTCTTGTTTGGGAA 59.280 43.478 17.98 0.00 41.75 3.97
370 396 2.417719 ACCCACCTAGGAACTCTTGT 57.582 50.000 17.98 0.00 41.75 3.16
393 422 2.668120 GCTCAGGCCTCAAGCTCCT 61.668 63.158 23.67 0.00 43.05 3.69
394 423 1.333636 TAGCTCAGGCCTCAAGCTCC 61.334 60.000 32.63 10.10 44.89 4.70
395 424 0.758123 ATAGCTCAGGCCTCAAGCTC 59.242 55.000 32.63 10.70 44.89 4.09
397 426 0.758123 AGATAGCTCAGGCCTCAAGC 59.242 55.000 23.57 23.57 39.73 4.01
398 427 1.344114 GGAGATAGCTCAGGCCTCAAG 59.656 57.143 10.68 4.49 43.14 3.02
399 428 1.418334 GGAGATAGCTCAGGCCTCAA 58.582 55.000 10.68 0.00 43.14 3.02
400 429 0.825425 CGGAGATAGCTCAGGCCTCA 60.825 60.000 10.68 0.00 43.14 3.86
401 430 1.531739 CCGGAGATAGCTCAGGCCTC 61.532 65.000 14.29 0.00 46.87 4.70
402 431 1.532794 CCGGAGATAGCTCAGGCCT 60.533 63.158 14.29 0.00 46.87 5.19
403 432 3.055580 CCGGAGATAGCTCAGGCC 58.944 66.667 14.29 0.00 46.87 5.19
406 435 2.049618 GCGCCGGAGATAGCTCAG 60.050 66.667 10.31 5.67 43.14 3.35
421 450 2.060284 CCATTTTTGACCACACATGCG 58.940 47.619 0.00 0.00 0.00 4.73
486 529 6.633500 TTGCTGCTACTACTTTTGTTGATT 57.367 33.333 0.00 0.00 0.00 2.57
487 530 6.824305 ATTGCTGCTACTACTTTTGTTGAT 57.176 33.333 0.00 0.00 0.00 2.57
496 539 2.840651 AGGTCCAATTGCTGCTACTACT 59.159 45.455 0.00 0.00 0.00 2.57
497 540 2.939103 CAGGTCCAATTGCTGCTACTAC 59.061 50.000 0.00 0.00 0.00 2.73
498 541 2.092968 CCAGGTCCAATTGCTGCTACTA 60.093 50.000 0.00 0.00 0.00 1.82
516 559 4.738998 TTGCGCCCCATGTCCCAG 62.739 66.667 4.18 0.00 0.00 4.45
568 611 5.163426 TGTTTTAACCAGGAGTACTTGTCGA 60.163 40.000 0.00 0.00 0.00 4.20
573 616 6.256643 TCCTTGTTTTAACCAGGAGTACTT 57.743 37.500 10.47 0.00 43.57 2.24
601 644 2.992593 AGCAGCTAAAAAGGTAGGAGC 58.007 47.619 0.00 0.00 0.00 4.70
602 645 4.870991 GTGTAGCAGCTAAAAAGGTAGGAG 59.129 45.833 2.87 0.00 0.00 3.69
603 646 4.530946 AGTGTAGCAGCTAAAAAGGTAGGA 59.469 41.667 2.87 0.00 0.00 2.94
640 686 0.887387 GACAAAAGGGTGTAGCCGCA 60.887 55.000 0.00 0.00 38.44 5.69
641 687 0.887387 TGACAAAAGGGTGTAGCCGC 60.887 55.000 0.00 0.00 38.44 6.53
642 688 1.535462 CTTGACAAAAGGGTGTAGCCG 59.465 52.381 0.00 0.00 38.44 5.52
671 717 8.809478 GTTGAGCTACTAATAGAACTTGCTAAC 58.191 37.037 0.00 0.00 0.00 2.34
746 792 2.032924 ACTACAGAAAAGGTGTTTGCGC 59.967 45.455 0.00 0.00 0.00 6.09
747 793 3.617669 CACTACAGAAAAGGTGTTTGCG 58.382 45.455 0.00 0.00 0.00 4.85
770 816 1.272985 TGGGACAAGGCTTTTATGGGG 60.273 52.381 0.00 0.00 31.92 4.96
794 840 1.537562 GCCATATGCAAGGAAAGCTGC 60.538 52.381 7.33 0.00 40.77 5.25
795 841 2.029623 AGCCATATGCAAGGAAAGCTG 58.970 47.619 7.33 0.00 44.83 4.24
796 842 2.449137 AGCCATATGCAAGGAAAGCT 57.551 45.000 7.33 0.94 44.83 3.74
806 852 1.510480 GCCGGTCTGAAGCCATATGC 61.510 60.000 1.90 0.00 41.71 3.14
809 855 1.522092 CTGCCGGTCTGAAGCCATA 59.478 57.895 1.90 0.00 0.00 2.74
811 857 4.020617 CCTGCCGGTCTGAAGCCA 62.021 66.667 1.90 0.00 0.00 4.75
828 874 9.289303 CATGTACTTTGCTGAAATAACAATACC 57.711 33.333 0.00 0.00 0.00 2.73
871 937 6.886459 ACACATGGAGCTTACTGTGAAATAAT 59.114 34.615 22.54 4.28 41.11 1.28
874 940 4.655963 ACACATGGAGCTTACTGTGAAAT 58.344 39.130 22.54 5.37 41.11 2.17
939 1006 3.012518 CCTGTCTGCCTAAAACATCCTG 58.987 50.000 0.00 0.00 0.00 3.86
972 1039 0.476338 TTGGGAAGTGCAAGCCAGTA 59.524 50.000 0.00 0.00 0.00 2.74
973 1040 0.396974 TTTGGGAAGTGCAAGCCAGT 60.397 50.000 0.00 0.00 0.00 4.00
974 1041 0.032540 GTTTGGGAAGTGCAAGCCAG 59.967 55.000 0.00 0.00 0.00 4.85
975 1042 1.733402 CGTTTGGGAAGTGCAAGCCA 61.733 55.000 0.00 0.00 0.00 4.75
976 1043 1.007387 CGTTTGGGAAGTGCAAGCC 60.007 57.895 0.00 0.00 0.00 4.35
977 1044 1.007387 CCGTTTGGGAAGTGCAAGC 60.007 57.895 0.00 0.00 38.47 4.01
1039 1113 5.466058 TGTGAATTAAGCAACTTGCCAAATG 59.534 36.000 10.25 0.00 46.52 2.32
1075 1150 0.984230 TTGGTCTCAACCTAGGCAGG 59.016 55.000 9.30 0.00 46.60 4.85
1076 1151 2.427506 GTTTGGTCTCAACCTAGGCAG 58.572 52.381 9.30 2.39 46.60 4.85
1077 1152 1.270625 CGTTTGGTCTCAACCTAGGCA 60.271 52.381 9.30 0.00 46.60 4.75
1078 1153 1.439679 CGTTTGGTCTCAACCTAGGC 58.560 55.000 9.30 0.00 46.60 3.93
1119 1198 2.229784 CTCTTTCAACCAACCATCAGGC 59.770 50.000 0.00 0.00 39.06 4.85
1451 1548 6.068010 TCAACATAATTTGGTATGCCCCTAG 58.932 40.000 0.00 0.00 35.26 3.02
1484 1582 5.902613 TTCCATGGAGCTTAACTGAATTG 57.097 39.130 15.53 0.00 0.00 2.32
1500 1608 4.730042 CGCGAAAGTTGACAATATTCCATG 59.270 41.667 0.00 0.00 0.00 3.66
1508 1616 4.000988 ACCTATTCGCGAAAGTTGACAAT 58.999 39.130 27.23 8.39 0.00 2.71
1520 1628 1.129326 CTAGCCGAAACCTATTCGCG 58.871 55.000 0.00 0.00 40.30 5.87
1548 1662 0.250038 GATATGGCGAAGGAGCAGCA 60.250 55.000 0.00 0.00 39.27 4.41
1587 1701 2.310779 AGTGGAAGCTGACTAGTCCA 57.689 50.000 20.11 7.51 37.83 4.02
1606 1720 2.308275 TGGACCCATGTGTCATGATGAA 59.692 45.455 10.59 0.00 36.97 2.57
1612 1726 1.075601 AAGGTGGACCCATGTGTCAT 58.924 50.000 10.59 0.00 36.97 3.06
1636 1750 7.239563 ACCCCATTTTATTTTCTTCCCTCAAAT 59.760 33.333 0.00 0.00 0.00 2.32
1698 1812 8.943594 ACCCTATTTAAACAATCTTACCACAA 57.056 30.769 0.00 0.00 0.00 3.33
1802 1917 3.273434 GCAACAGGCATCAGAGTGATAA 58.727 45.455 0.00 0.00 43.97 1.75
1825 1951 4.202050 CCTTTTCTGTTGGAACCAAGACTG 60.202 45.833 6.52 1.99 36.52 3.51
1826 1952 3.954258 CCTTTTCTGTTGGAACCAAGACT 59.046 43.478 6.52 0.00 36.52 3.24
1867 1993 7.890127 TCCTATCAAATCATCACCAAAACTTCT 59.110 33.333 0.00 0.00 0.00 2.85
1868 1994 8.055279 TCCTATCAAATCATCACCAAAACTTC 57.945 34.615 0.00 0.00 0.00 3.01
1892 2018 4.574599 ACTGCAGGTGAGAATTTGTTTC 57.425 40.909 19.93 0.00 34.31 2.78
1899 2025 2.575279 AGATCCAACTGCAGGTGAGAAT 59.425 45.455 33.30 21.47 0.00 2.40
1901 2027 1.277273 CAGATCCAACTGCAGGTGAGA 59.723 52.381 33.30 26.01 0.00 3.27
1907 2036 0.520404 GCACACAGATCCAACTGCAG 59.480 55.000 13.48 13.48 41.06 4.41
1920 2049 4.265893 TCCACTAAAGAAAACTGCACACA 58.734 39.130 0.00 0.00 0.00 3.72
1921 2050 4.789802 GCTCCACTAAAGAAAACTGCACAC 60.790 45.833 0.00 0.00 0.00 3.82
1987 2116 5.890419 AGAGGATTGCTAATGAAAAGGGAAG 59.110 40.000 0.00 0.00 0.00 3.46
1988 2117 5.653769 CAGAGGATTGCTAATGAAAAGGGAA 59.346 40.000 0.00 0.00 0.00 3.97
1990 2119 4.340381 CCAGAGGATTGCTAATGAAAAGGG 59.660 45.833 0.00 0.00 0.00 3.95
1991 2120 4.952335 ACCAGAGGATTGCTAATGAAAAGG 59.048 41.667 0.00 0.00 0.00 3.11
2018 2149 8.492673 TCACCAGCATATTTAGTTGAACTAAG 57.507 34.615 16.34 7.59 41.23 2.18
2028 2159 7.220030 ACAACCTAGATCACCAGCATATTTAG 58.780 38.462 0.00 0.00 0.00 1.85
2095 2594 6.019075 CGTAGAAATATTCAAGATTCACCGCA 60.019 38.462 0.00 0.00 0.00 5.69
2116 2615 8.471457 CAATGAATTTTTGTGTTGAAGTCGTAG 58.529 33.333 0.00 0.00 0.00 3.51
2161 2661 9.415544 GCTTCTTTCAACTTTCATGTTTCATAT 57.584 29.630 0.00 0.00 0.00 1.78
2168 2668 6.547510 AGGTTAGCTTCTTTCAACTTTCATGT 59.452 34.615 0.00 0.00 0.00 3.21
2169 2669 6.974965 AGGTTAGCTTCTTTCAACTTTCATG 58.025 36.000 0.00 0.00 0.00 3.07
2170 2670 7.001073 AGAGGTTAGCTTCTTTCAACTTTCAT 58.999 34.615 0.00 0.00 0.00 2.57
2171 2671 6.357367 AGAGGTTAGCTTCTTTCAACTTTCA 58.643 36.000 0.00 0.00 0.00 2.69
2172 2672 6.869315 AGAGGTTAGCTTCTTTCAACTTTC 57.131 37.500 0.00 0.00 0.00 2.62
2184 2687 1.981495 AGACAGGCAAGAGGTTAGCTT 59.019 47.619 0.00 0.00 0.00 3.74
2190 2694 2.576615 GTTCAAAGACAGGCAAGAGGT 58.423 47.619 0.00 0.00 0.00 3.85
2197 2701 8.202137 TGTACTATATAAGGTTCAAAGACAGGC 58.798 37.037 0.00 0.00 0.00 4.85
2223 2727 8.437274 TTTCTTTACAGAGGGAGTATCTTCTT 57.563 34.615 0.00 0.00 33.73 2.52
2224 2728 8.616799 ATTTCTTTACAGAGGGAGTATCTTCT 57.383 34.615 0.00 0.00 33.73 2.85
2231 2735 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
2232 2736 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
2287 2791 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2298 2802 3.028850 CCATGTACTCCCTCCGTAAAGA 58.971 50.000 0.00 0.00 0.00 2.52
2299 2803 2.483188 GCCATGTACTCCCTCCGTAAAG 60.483 54.545 0.00 0.00 0.00 1.85
2316 2820 6.935167 AGGATTCATTTCGTTAAAAAGCCAT 58.065 32.000 0.00 0.00 0.00 4.40
2317 2821 6.339587 AGGATTCATTTCGTTAAAAAGCCA 57.660 33.333 0.00 0.00 0.00 4.75
2318 2822 8.751302 TTAAGGATTCATTTCGTTAAAAAGCC 57.249 30.769 0.00 0.00 34.68 4.35
2325 2920 7.552687 ACAGCTCATTAAGGATTCATTTCGTTA 59.447 33.333 0.00 0.00 0.00 3.18
2360 2955 8.765219 CGATTATTTGATTTCTAGGTCGAACAT 58.235 33.333 1.87 0.00 0.00 2.71
2411 3006 8.507524 AACGCCTAAAAGCTATTCTAAGAAAT 57.492 30.769 0.00 0.00 0.00 2.17
2629 3228 0.320334 TGGCGTCACAACACGATCAT 60.320 50.000 0.00 0.00 42.69 2.45
2669 3268 0.110486 GGTTCCCTGAAACCTGCAGA 59.890 55.000 17.39 0.00 44.45 4.26
2785 3385 8.871862 ACCTTTTTATTTCACAACGTTTTTACC 58.128 29.630 0.00 0.00 0.00 2.85
2809 3409 4.058124 GCATCCCTCAAAAAGAAAACACC 58.942 43.478 0.00 0.00 0.00 4.16
2831 3432 2.086869 CAACCACCCTTGTATCTGCAG 58.913 52.381 7.63 7.63 0.00 4.41
2840 3441 2.554032 CAAACTCTAGCAACCACCCTTG 59.446 50.000 0.00 0.00 0.00 3.61
2849 3450 4.717279 AGGTAAACCCAAACTCTAGCAA 57.283 40.909 0.00 0.00 36.42 3.91
2854 3455 7.179269 TGCATAATTAGGTAAACCCAAACTCT 58.821 34.615 0.00 0.00 36.42 3.24
2886 3487 6.808704 GCAAAAACTGAGGGAGTATGATTTTC 59.191 38.462 0.00 0.00 33.09 2.29
2897 3498 2.039216 TCCGTATGCAAAAACTGAGGGA 59.961 45.455 0.00 0.00 0.00 4.20
2898 3499 2.420022 CTCCGTATGCAAAAACTGAGGG 59.580 50.000 0.00 0.00 0.00 4.30
2899 3500 3.334691 TCTCCGTATGCAAAAACTGAGG 58.665 45.455 14.34 2.70 30.53 3.86
2900 3501 5.356882 TTTCTCCGTATGCAAAAACTGAG 57.643 39.130 10.45 10.45 0.00 3.35
2901 3502 5.759506 TTTTCTCCGTATGCAAAAACTGA 57.240 34.783 0.00 0.00 0.00 3.41
2903 3504 6.744112 TCATTTTTCTCCGTATGCAAAAACT 58.256 32.000 0.00 0.00 32.13 2.66
2904 3505 6.640907 ACTCATTTTTCTCCGTATGCAAAAAC 59.359 34.615 0.00 0.00 32.13 2.43
2905 3506 6.640499 CACTCATTTTTCTCCGTATGCAAAAA 59.360 34.615 0.00 0.00 33.46 1.94
2906 3507 6.016693 TCACTCATTTTTCTCCGTATGCAAAA 60.017 34.615 0.00 0.00 0.00 2.44
2907 3508 5.471797 TCACTCATTTTTCTCCGTATGCAAA 59.528 36.000 0.00 0.00 0.00 3.68
2908 3509 5.000591 TCACTCATTTTTCTCCGTATGCAA 58.999 37.500 0.00 0.00 0.00 4.08
2909 3510 4.574892 TCACTCATTTTTCTCCGTATGCA 58.425 39.130 0.00 0.00 0.00 3.96
2910 3511 5.545658 TTCACTCATTTTTCTCCGTATGC 57.454 39.130 0.00 0.00 0.00 3.14
2911 3512 7.545362 AGATTCACTCATTTTTCTCCGTATG 57.455 36.000 0.00 0.00 0.00 2.39
2912 3513 8.258007 TGTAGATTCACTCATTTTTCTCCGTAT 58.742 33.333 0.00 0.00 0.00 3.06
2913 3514 7.544566 GTGTAGATTCACTCATTTTTCTCCGTA 59.455 37.037 0.00 0.00 35.68 4.02
2914 3515 6.369065 GTGTAGATTCACTCATTTTTCTCCGT 59.631 38.462 0.00 0.00 35.68 4.69
2915 3516 6.591834 AGTGTAGATTCACTCATTTTTCTCCG 59.408 38.462 0.00 0.00 44.07 4.63
2916 3517 7.913674 AGTGTAGATTCACTCATTTTTCTCC 57.086 36.000 0.00 0.00 44.07 3.71
2948 3549 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
2949 3550 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
2950 3551 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
2951 3552 7.559486 ACGGACTACATACGGATGTATATAGA 58.441 38.462 20.64 0.00 45.42 1.98
2952 3553 7.783090 ACGGACTACATACGGATGTATATAG 57.217 40.000 20.64 13.28 45.42 1.31
2953 3554 9.836864 AATACGGACTACATACGGATGTATATA 57.163 33.333 20.64 9.35 45.42 0.86
2954 3555 8.618677 CAATACGGACTACATACGGATGTATAT 58.381 37.037 20.64 12.15 45.42 0.86
2955 3556 7.823799 TCAATACGGACTACATACGGATGTATA 59.176 37.037 20.64 10.32 45.42 1.47
2956 3557 6.656270 TCAATACGGACTACATACGGATGTAT 59.344 38.462 20.64 11.04 45.42 2.29
2957 3558 5.997129 TCAATACGGACTACATACGGATGTA 59.003 40.000 19.32 19.32 44.77 2.29
2959 3560 5.366829 TCAATACGGACTACATACGGATG 57.633 43.478 5.94 5.94 39.16 3.51
2960 3561 6.395426 TTTCAATACGGACTACATACGGAT 57.605 37.500 0.00 0.00 31.40 4.18
2961 3562 5.833406 TTTCAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
2962 3563 6.444633 AGATTTCAATACGGACTACATACGG 58.555 40.000 0.00 0.00 0.00 4.02
2963 3564 7.361127 AGAGATTTCAATACGGACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
2967 3568 9.582431 CTTTTAGAGATTTCAATACGGACTACA 57.418 33.333 0.00 0.00 0.00 2.74
2968 3569 9.032420 CCTTTTAGAGATTTCAATACGGACTAC 57.968 37.037 0.00 0.00 0.00 2.73
2969 3570 8.202137 CCCTTTTAGAGATTTCAATACGGACTA 58.798 37.037 0.00 0.00 0.00 2.59
2970 3571 7.048512 CCCTTTTAGAGATTTCAATACGGACT 58.951 38.462 0.00 0.00 0.00 3.85
2971 3572 6.238402 GCCCTTTTAGAGATTTCAATACGGAC 60.238 42.308 0.00 0.00 0.00 4.79
2972 3573 5.820947 GCCCTTTTAGAGATTTCAATACGGA 59.179 40.000 0.00 0.00 0.00 4.69
2973 3574 5.823045 AGCCCTTTTAGAGATTTCAATACGG 59.177 40.000 0.00 0.00 0.00 4.02
2974 3575 6.927294 AGCCCTTTTAGAGATTTCAATACG 57.073 37.500 0.00 0.00 0.00 3.06
2978 3579 9.614792 GAGTATAAGCCCTTTTAGAGATTTCAA 57.385 33.333 0.00 0.00 0.00 2.69
2979 3580 8.211629 GGAGTATAAGCCCTTTTAGAGATTTCA 58.788 37.037 0.00 0.00 0.00 2.69
2980 3581 7.662258 GGGAGTATAAGCCCTTTTAGAGATTTC 59.338 40.741 4.29 0.00 41.31 2.17
2981 3582 7.519057 GGGAGTATAAGCCCTTTTAGAGATTT 58.481 38.462 4.29 0.00 41.31 2.17
2982 3583 7.080653 GGGAGTATAAGCCCTTTTAGAGATT 57.919 40.000 4.29 0.00 41.31 2.40
2983 3584 6.689663 GGGAGTATAAGCCCTTTTAGAGAT 57.310 41.667 4.29 0.00 41.31 2.75
2993 3594 0.967662 GACGGAGGGAGTATAAGCCC 59.032 60.000 3.44 3.44 45.04 5.19
2994 3595 0.967662 GGACGGAGGGAGTATAAGCC 59.032 60.000 0.00 0.00 0.00 4.35
2995 3596 0.597072 CGGACGGAGGGAGTATAAGC 59.403 60.000 0.00 0.00 0.00 3.09
2996 3597 1.202855 TCCGGACGGAGGGAGTATAAG 60.203 57.143 9.76 0.00 39.76 1.73
2997 3598 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
2998 3599 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
2999 3600 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3000 3601 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3001 3602 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3002 3603 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3003 3604 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3004 3605 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3005 3606 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3006 3607 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3007 3608 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3008 3609 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3009 3610 1.274596 CCGACAAGTATTTCCGGACG 58.725 55.000 1.83 0.00 42.49 4.79
3010 3611 1.648504 CCCGACAAGTATTTCCGGAC 58.351 55.000 1.83 0.00 42.49 4.79
3011 3612 0.538118 CCCCGACAAGTATTTCCGGA 59.462 55.000 0.00 0.00 42.49 5.14
3012 3613 0.538118 TCCCCGACAAGTATTTCCGG 59.462 55.000 0.00 0.00 39.85 5.14
3013 3614 2.389962 TTCCCCGACAAGTATTTCCG 57.610 50.000 0.00 0.00 0.00 4.30
3014 3615 3.380320 CCATTTCCCCGACAAGTATTTCC 59.620 47.826 0.00 0.00 0.00 3.13
3015 3616 4.266714 TCCATTTCCCCGACAAGTATTTC 58.733 43.478 0.00 0.00 0.00 2.17
3016 3617 4.310022 TCCATTTCCCCGACAAGTATTT 57.690 40.909 0.00 0.00 0.00 1.40
3017 3618 4.080015 TCATCCATTTCCCCGACAAGTATT 60.080 41.667 0.00 0.00 0.00 1.89
3018 3619 3.458118 TCATCCATTTCCCCGACAAGTAT 59.542 43.478 0.00 0.00 0.00 2.12
3019 3620 2.841266 TCATCCATTTCCCCGACAAGTA 59.159 45.455 0.00 0.00 0.00 2.24
3020 3621 1.633432 TCATCCATTTCCCCGACAAGT 59.367 47.619 0.00 0.00 0.00 3.16
3021 3622 2.418368 TCATCCATTTCCCCGACAAG 57.582 50.000 0.00 0.00 0.00 3.16
3022 3623 2.889170 TTCATCCATTTCCCCGACAA 57.111 45.000 0.00 0.00 0.00 3.18
3023 3624 2.509548 AGATTCATCCATTTCCCCGACA 59.490 45.455 0.00 0.00 0.00 4.35
3024 3625 3.214696 AGATTCATCCATTTCCCCGAC 57.785 47.619 0.00 0.00 0.00 4.79
3025 3626 4.040461 GTCTAGATTCATCCATTTCCCCGA 59.960 45.833 0.00 0.00 0.00 5.14
3026 3627 4.319177 GTCTAGATTCATCCATTTCCCCG 58.681 47.826 0.00 0.00 0.00 5.73
3027 3628 4.202367 ACGTCTAGATTCATCCATTTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
3028 3629 4.962155 ACGTCTAGATTCATCCATTTCCC 58.038 43.478 0.00 0.00 0.00 3.97
3029 3630 8.608844 AAATACGTCTAGATTCATCCATTTCC 57.391 34.615 0.00 0.00 0.00 3.13
3061 3662 9.607333 AGAGATGGATAAAACTGGATGTATCTA 57.393 33.333 0.00 0.00 0.00 1.98
3062 3663 8.503428 AGAGATGGATAAAACTGGATGTATCT 57.497 34.615 0.00 0.00 0.00 1.98
3063 3664 9.566432 AAAGAGATGGATAAAACTGGATGTATC 57.434 33.333 0.00 0.00 0.00 2.24
3064 3665 9.347240 CAAAGAGATGGATAAAACTGGATGTAT 57.653 33.333 0.00 0.00 0.00 2.29
3065 3666 8.548025 TCAAAGAGATGGATAAAACTGGATGTA 58.452 33.333 0.00 0.00 0.00 2.29
3066 3667 7.337942 GTCAAAGAGATGGATAAAACTGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
3067 3668 7.337689 TGTCAAAGAGATGGATAAAACTGGATG 59.662 37.037 0.00 0.00 0.00 3.51
3068 3669 7.405292 TGTCAAAGAGATGGATAAAACTGGAT 58.595 34.615 0.00 0.00 0.00 3.41
3069 3670 6.778821 TGTCAAAGAGATGGATAAAACTGGA 58.221 36.000 0.00 0.00 0.00 3.86
3070 3671 7.175641 ACTTGTCAAAGAGATGGATAAAACTGG 59.824 37.037 0.00 0.00 36.84 4.00
3071 3672 8.103948 ACTTGTCAAAGAGATGGATAAAACTG 57.896 34.615 0.00 0.00 36.84 3.16
3072 3673 9.965902 ATACTTGTCAAAGAGATGGATAAAACT 57.034 29.630 0.00 0.00 36.84 2.66
3077 3678 9.177608 CCAAAATACTTGTCAAAGAGATGGATA 57.822 33.333 0.00 0.00 36.84 2.59
3078 3679 7.123247 CCCAAAATACTTGTCAAAGAGATGGAT 59.877 37.037 0.00 0.00 36.84 3.41
3079 3680 6.434028 CCCAAAATACTTGTCAAAGAGATGGA 59.566 38.462 0.00 0.00 36.84 3.41
3080 3681 6.434028 TCCCAAAATACTTGTCAAAGAGATGG 59.566 38.462 0.00 0.00 36.84 3.51
3081 3682 7.308435 GTCCCAAAATACTTGTCAAAGAGATG 58.692 38.462 0.00 0.00 36.84 2.90
3082 3683 6.149474 CGTCCCAAAATACTTGTCAAAGAGAT 59.851 38.462 0.00 0.00 36.84 2.75
3083 3684 5.468746 CGTCCCAAAATACTTGTCAAAGAGA 59.531 40.000 0.00 0.00 36.84 3.10
3084 3685 5.334879 CCGTCCCAAAATACTTGTCAAAGAG 60.335 44.000 0.00 0.00 36.84 2.85
3085 3686 4.517453 CCGTCCCAAAATACTTGTCAAAGA 59.483 41.667 0.00 0.00 36.84 2.52
3086 3687 4.517453 TCCGTCCCAAAATACTTGTCAAAG 59.483 41.667 0.00 0.00 39.49 2.77
3087 3688 4.462133 TCCGTCCCAAAATACTTGTCAAA 58.538 39.130 0.00 0.00 0.00 2.69
3088 3689 4.069304 CTCCGTCCCAAAATACTTGTCAA 58.931 43.478 0.00 0.00 0.00 3.18
3089 3690 3.558321 CCTCCGTCCCAAAATACTTGTCA 60.558 47.826 0.00 0.00 0.00 3.58
3090 3691 3.007635 CCTCCGTCCCAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
3091 3692 2.374170 ACCTCCGTCCCAAAATACTTGT 59.626 45.455 0.00 0.00 0.00 3.16
3092 3693 3.067684 ACCTCCGTCCCAAAATACTTG 57.932 47.619 0.00 0.00 0.00 3.16
3093 3694 3.842436 ACTACCTCCGTCCCAAAATACTT 59.158 43.478 0.00 0.00 0.00 2.24
3094 3695 3.447950 ACTACCTCCGTCCCAAAATACT 58.552 45.455 0.00 0.00 0.00 2.12
3095 3696 3.900966 ACTACCTCCGTCCCAAAATAC 57.099 47.619 0.00 0.00 0.00 1.89
3096 3697 4.352009 TGTACTACCTCCGTCCCAAAATA 58.648 43.478 0.00 0.00 0.00 1.40
3097 3698 3.175594 TGTACTACCTCCGTCCCAAAAT 58.824 45.455 0.00 0.00 0.00 1.82
3098 3699 2.607499 TGTACTACCTCCGTCCCAAAA 58.393 47.619 0.00 0.00 0.00 2.44
3099 3700 2.307496 TGTACTACCTCCGTCCCAAA 57.693 50.000 0.00 0.00 0.00 3.28
3100 3701 2.104967 CATGTACTACCTCCGTCCCAA 58.895 52.381 0.00 0.00 0.00 4.12
3101 3702 1.006281 ACATGTACTACCTCCGTCCCA 59.994 52.381 0.00 0.00 0.00 4.37
3102 3703 1.407979 CACATGTACTACCTCCGTCCC 59.592 57.143 0.00 0.00 0.00 4.46
3103 3704 1.407979 CCACATGTACTACCTCCGTCC 59.592 57.143 0.00 0.00 0.00 4.79
3104 3705 2.372264 TCCACATGTACTACCTCCGTC 58.628 52.381 0.00 0.00 0.00 4.79
3105 3706 2.519771 TCCACATGTACTACCTCCGT 57.480 50.000 0.00 0.00 0.00 4.69
3106 3707 2.956333 TGATCCACATGTACTACCTCCG 59.044 50.000 0.00 0.00 0.00 4.63
3118 3719 6.238456 CGCTTGTGTTATAACATGATCCACAT 60.238 38.462 20.72 0.00 41.59 3.21
3119 3720 5.064579 CGCTTGTGTTATAACATGATCCACA 59.935 40.000 20.72 9.70 41.59 4.17
3120 3721 5.501715 CGCTTGTGTTATAACATGATCCAC 58.498 41.667 20.72 7.29 41.59 4.02
3121 3722 4.035091 GCGCTTGTGTTATAACATGATCCA 59.965 41.667 20.72 11.05 41.59 3.41
3122 3723 4.527564 GCGCTTGTGTTATAACATGATCC 58.472 43.478 20.72 8.64 41.59 3.36
3123 3724 4.273480 AGGCGCTTGTGTTATAACATGATC 59.727 41.667 20.72 8.99 41.59 2.92
3142 3743 7.672983 ATTTCTGTATGGTATTTCATAGGCG 57.327 36.000 0.00 0.00 31.10 5.52
3155 3756 8.292448 GTGCATTTGGTCTATATTTCTGTATGG 58.708 37.037 0.00 0.00 0.00 2.74
3166 3767 2.930950 GCAGGGTGCATTTGGTCTATA 58.069 47.619 0.00 0.00 44.26 1.31
3169 3770 4.102113 GCAGGGTGCATTTGGTCT 57.898 55.556 0.00 0.00 44.26 3.85
3212 3908 6.416750 GGTTGCTATTACACAGTTCAAACAAC 59.583 38.462 0.00 0.00 33.55 3.32
3223 3919 8.630054 AAAAGATAAGTGGTTGCTATTACACA 57.370 30.769 0.00 0.00 36.35 3.72
3260 3956 7.621832 TCATGCAAAAATACGAGAAAGTTTG 57.378 32.000 0.00 0.00 0.00 2.93
3267 3963 9.254133 TGAAAATTTTCATGCAAAAATACGAGA 57.746 25.926 26.01 1.20 41.88 4.04
3268 3964 9.519905 CTGAAAATTTTCATGCAAAAATACGAG 57.480 29.630 28.86 11.91 45.26 4.18
3368 4122 7.865707 ACATTTTTGCGCTATCCTAGAAATAG 58.134 34.615 9.73 0.00 0.00 1.73
3371 4125 6.374333 AGAACATTTTTGCGCTATCCTAGAAA 59.626 34.615 9.73 0.00 0.00 2.52
3395 4149 8.818057 GGTTATCTAGTGTACATTAGCAAACAG 58.182 37.037 25.87 9.13 0.00 3.16
4147 4901 3.626924 GCGGCTCGGATATGGGGT 61.627 66.667 0.00 0.00 0.00 4.95
4899 5658 2.713531 TTTGCTGAACAGGGAGGCCC 62.714 60.000 0.00 0.00 45.90 5.80
4900 5659 0.827507 TTTTGCTGAACAGGGAGGCC 60.828 55.000 0.00 0.00 0.00 5.19
4902 5661 3.555586 CCAAATTTTGCTGAACAGGGAGG 60.556 47.826 3.50 0.00 0.00 4.30
4904 5663 3.037549 ACCAAATTTTGCTGAACAGGGA 58.962 40.909 3.50 0.00 0.00 4.20
4905 5664 3.473923 ACCAAATTTTGCTGAACAGGG 57.526 42.857 3.50 0.00 0.00 4.45
4906 5665 4.440880 TGAACCAAATTTTGCTGAACAGG 58.559 39.130 3.50 0.00 0.00 4.00
4907 5666 7.566709 GTTATGAACCAAATTTTGCTGAACAG 58.433 34.615 3.50 0.00 0.00 3.16
4908 5667 7.475771 GTTATGAACCAAATTTTGCTGAACA 57.524 32.000 3.50 0.74 0.00 3.18
4924 5683 8.548721 CGTGTCAGGAAATTATAGGTTATGAAC 58.451 37.037 0.00 0.00 0.00 3.18
4925 5684 7.225931 GCGTGTCAGGAAATTATAGGTTATGAA 59.774 37.037 0.00 0.00 0.00 2.57
4926 5685 6.704493 GCGTGTCAGGAAATTATAGGTTATGA 59.296 38.462 0.00 0.00 0.00 2.15
4927 5686 6.073222 GGCGTGTCAGGAAATTATAGGTTATG 60.073 42.308 0.00 0.00 0.00 1.90
4928 5687 5.995897 GGCGTGTCAGGAAATTATAGGTTAT 59.004 40.000 0.00 0.00 0.00 1.89
4929 5688 5.129815 AGGCGTGTCAGGAAATTATAGGTTA 59.870 40.000 0.00 0.00 0.00 2.85
4930 5689 4.080526 AGGCGTGTCAGGAAATTATAGGTT 60.081 41.667 0.00 0.00 0.00 3.50
4931 5690 3.454812 AGGCGTGTCAGGAAATTATAGGT 59.545 43.478 0.00 0.00 0.00 3.08
4932 5691 4.073293 AGGCGTGTCAGGAAATTATAGG 57.927 45.455 0.00 0.00 0.00 2.57
4933 5692 5.597806 TGTAGGCGTGTCAGGAAATTATAG 58.402 41.667 0.00 0.00 0.00 1.31
4934 5693 5.601583 TGTAGGCGTGTCAGGAAATTATA 57.398 39.130 0.00 0.00 0.00 0.98
4935 5694 4.481368 TGTAGGCGTGTCAGGAAATTAT 57.519 40.909 0.00 0.00 0.00 1.28
4936 5695 3.965379 TGTAGGCGTGTCAGGAAATTA 57.035 42.857 0.00 0.00 0.00 1.40
4937 5696 2.851263 TGTAGGCGTGTCAGGAAATT 57.149 45.000 0.00 0.00 0.00 1.82
4948 5707 7.753580 GCAAAACTATTAGAATTTTGTAGGCGT 59.246 33.333 15.42 0.00 42.61 5.68
4997 5757 2.654863 CTCCTGCCATTTCGGGTAAAT 58.345 47.619 0.00 0.00 38.36 1.40
5004 5764 0.177604 AGAGAGCTCCTGCCATTTCG 59.822 55.000 10.93 0.00 40.80 3.46
5024 5784 6.818142 ACATTCCTTACCTTTAATGCAAATGC 59.182 34.615 0.00 0.00 42.50 3.56
5025 5785 9.301153 GTACATTCCTTACCTTTAATGCAAATG 57.699 33.333 0.00 0.00 33.57 2.32
5026 5786 9.030452 TGTACATTCCTTACCTTTAATGCAAAT 57.970 29.630 0.00 0.00 33.57 2.32
5027 5787 8.410673 TGTACATTCCTTACCTTTAATGCAAA 57.589 30.769 0.00 0.00 33.57 3.68
5028 5788 8.410673 TTGTACATTCCTTACCTTTAATGCAA 57.589 30.769 0.00 0.00 33.57 4.08
5029 5789 8.410673 TTTGTACATTCCTTACCTTTAATGCA 57.589 30.769 0.00 0.00 33.57 3.96
5039 5799 8.308207 TGGCCTAAAATTTTGTACATTCCTTAC 58.692 33.333 13.76 0.00 0.00 2.34
5041 5801 7.016170 ACTGGCCTAAAATTTTGTACATTCCTT 59.984 33.333 13.76 0.00 0.00 3.36
5076 5836 4.458989 TCCCTTTAGTTTGCTGCTAATGTG 59.541 41.667 0.00 0.00 0.00 3.21
5166 5938 8.770438 AACTTTGTTTCAAAATTAGTTCAGCA 57.230 26.923 0.00 0.00 0.00 4.41
5179 5951 5.046304 TCCAACCATCCAAACTTTGTTTCAA 60.046 36.000 0.88 0.00 0.00 2.69
5180 5952 4.467795 TCCAACCATCCAAACTTTGTTTCA 59.532 37.500 0.88 0.00 0.00 2.69
5181 5953 5.017294 TCCAACCATCCAAACTTTGTTTC 57.983 39.130 0.88 0.00 0.00 2.78
5182 5954 5.628797 ATCCAACCATCCAAACTTTGTTT 57.371 34.783 0.88 0.00 0.00 2.83
5183 5955 5.104569 ACAATCCAACCATCCAAACTTTGTT 60.105 36.000 0.88 0.00 0.00 2.83
5187 5959 4.222336 TGACAATCCAACCATCCAAACTT 58.778 39.130 0.00 0.00 0.00 2.66
5245 6018 7.634671 TGAGACATTCACAAGCATGAAATAT 57.365 32.000 0.00 0.00 41.78 1.28
5287 6060 0.381801 GGCGACTGCAACCCATTATG 59.618 55.000 0.00 0.00 45.35 1.90
5288 6061 0.751643 GGGCGACTGCAACCCATTAT 60.752 55.000 8.50 0.00 45.35 1.28
5305 6078 0.981277 TTTAGGAGAGAAGGGGCGGG 60.981 60.000 0.00 0.00 0.00 6.13
5306 6079 1.132500 ATTTAGGAGAGAAGGGGCGG 58.868 55.000 0.00 0.00 0.00 6.13
5307 6080 3.134081 TGTAATTTAGGAGAGAAGGGGCG 59.866 47.826 0.00 0.00 0.00 6.13
5308 6081 4.772886 TGTAATTTAGGAGAGAAGGGGC 57.227 45.455 0.00 0.00 0.00 5.80
5309 6082 9.343539 CTTATTTGTAATTTAGGAGAGAAGGGG 57.656 37.037 0.00 0.00 0.00 4.79
5310 6083 9.907229 ACTTATTTGTAATTTAGGAGAGAAGGG 57.093 33.333 0.00 0.00 0.00 3.95
5349 6138 2.294512 GCCTGCCCTTCTATATTGCAAC 59.705 50.000 0.00 0.00 0.00 4.17
5357 6146 1.344496 ACTACTGGCCTGCCCTTCTAT 60.344 52.381 9.95 0.00 34.56 1.98
5359 6148 0.042731 TACTACTGGCCTGCCCTTCT 59.957 55.000 9.95 0.00 34.56 2.85
5367 6156 2.173996 GGAGAGACTCTACTACTGGCCT 59.826 54.545 7.52 0.00 0.00 5.19
5397 6186 2.671682 GAACCCAGGACCTCCAGC 59.328 66.667 0.00 0.00 38.89 4.85
5420 6209 4.522022 GCATAATAATTCTGCAAGGAGGCT 59.478 41.667 0.00 0.00 35.96 4.58
5456 6259 3.780850 TCTGGGGAAGGGAATTTCTAGAC 59.219 47.826 0.00 0.00 0.00 2.59
5457 6260 3.780850 GTCTGGGGAAGGGAATTTCTAGA 59.219 47.826 0.00 0.00 0.00 2.43
5538 6341 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5539 6342 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5540 6343 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5541 6344 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
5542 6345 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
5543 6346 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
5560 6363 9.787532 CACTTGTTGAAATCTCTAGAAAAACAA 57.212 29.630 0.00 4.48 35.60 2.83
5561 6364 9.173021 TCACTTGTTGAAATCTCTAGAAAAACA 57.827 29.630 0.00 0.00 0.00 2.83
5562 6365 9.439537 GTCACTTGTTGAAATCTCTAGAAAAAC 57.560 33.333 0.00 0.00 35.39 2.43
5563 6366 9.396022 AGTCACTTGTTGAAATCTCTAGAAAAA 57.604 29.630 0.00 0.00 35.39 1.94
5564 6367 8.964476 AGTCACTTGTTGAAATCTCTAGAAAA 57.036 30.769 0.00 0.00 35.39 2.29
5565 6368 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5566 6369 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5567 6370 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5568 6371 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5569 6372 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5570 6373 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5571 6374 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5572 6375 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5573 6376 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5574 6377 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5575 6378 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5576 6379 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5577 6380 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5578 6381 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5579 6382 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5580 6383 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5581 6384 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5582 6385 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5583 6386 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5584 6387 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5585 6388 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5586 6389 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
5587 6390 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
5588 6391 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
5589 6392 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
5590 6393 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
5591 6394 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5592 6395 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
5593 6396 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
5594 6397 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
5595 6398 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
5596 6399 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
5597 6400 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
5626 6429 9.251440 ACCACATACGGTTGTATATAGACATAT 57.749 33.333 0.13 0.00 39.28 1.78
5627 6430 8.640063 ACCACATACGGTTGTATATAGACATA 57.360 34.615 0.13 0.00 39.28 2.29
5628 6431 7.534723 ACCACATACGGTTGTATATAGACAT 57.465 36.000 0.13 0.00 39.28 3.06
5629 6432 6.964807 ACCACATACGGTTGTATATAGACA 57.035 37.500 0.00 0.00 39.28 3.41
5630 6433 8.103948 ACTACCACATACGGTTGTATATAGAC 57.896 38.462 0.00 0.00 42.20 2.59
5631 6434 7.391554 GGACTACCACATACGGTTGTATATAGA 59.608 40.741 0.00 0.00 43.70 1.98
5632 6435 7.175467 TGGACTACCACATACGGTTGTATATAG 59.825 40.741 0.00 0.00 43.70 1.31
5633 6436 7.003482 TGGACTACCACATACGGTTGTATATA 58.997 38.462 0.00 0.00 43.70 0.86
5634 6437 5.834742 TGGACTACCACATACGGTTGTATAT 59.165 40.000 0.00 0.00 43.70 0.86
5635 6438 5.199723 TGGACTACCACATACGGTTGTATA 58.800 41.667 0.00 0.00 43.70 1.47
5636 6439 4.025360 TGGACTACCACATACGGTTGTAT 58.975 43.478 0.00 0.00 43.70 2.29
5637 6440 3.429492 TGGACTACCACATACGGTTGTA 58.571 45.455 0.00 0.00 43.70 2.41
5638 6441 2.250031 TGGACTACCACATACGGTTGT 58.750 47.619 0.00 0.00 45.87 3.32
5653 6456 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
5654 6457 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5671 6474 8.019094 CGTCCGTTCCTAAATATTTGTCTTTTT 58.981 33.333 11.05 0.00 0.00 1.94
5672 6475 7.361457 CCGTCCGTTCCTAAATATTTGTCTTTT 60.361 37.037 11.05 0.00 0.00 2.27
5673 6476 6.093082 CCGTCCGTTCCTAAATATTTGTCTTT 59.907 38.462 11.05 0.00 0.00 2.52
5674 6477 5.583457 CCGTCCGTTCCTAAATATTTGTCTT 59.417 40.000 11.05 0.00 0.00 3.01
5675 6478 5.105228 TCCGTCCGTTCCTAAATATTTGTCT 60.105 40.000 11.05 0.00 0.00 3.41
5676 6479 5.111293 TCCGTCCGTTCCTAAATATTTGTC 58.889 41.667 11.05 0.00 0.00 3.18
5677 6480 5.088680 TCCGTCCGTTCCTAAATATTTGT 57.911 39.130 11.05 0.00 0.00 2.83
5678 6481 6.613755 ATTCCGTCCGTTCCTAAATATTTG 57.386 37.500 11.05 1.40 0.00 2.32
5679 6482 7.503549 ACTATTCCGTCCGTTCCTAAATATTT 58.496 34.615 5.89 5.89 0.00 1.40
5680 6483 7.059202 ACTATTCCGTCCGTTCCTAAATATT 57.941 36.000 0.00 0.00 0.00 1.28
5681 6484 6.661304 ACTATTCCGTCCGTTCCTAAATAT 57.339 37.500 0.00 0.00 0.00 1.28
5682 6485 7.094205 GGATACTATTCCGTCCGTTCCTAAATA 60.094 40.741 0.00 0.00 0.00 1.40
5683 6486 6.294955 GGATACTATTCCGTCCGTTCCTAAAT 60.295 42.308 0.00 0.00 0.00 1.40
5684 6487 5.010012 GGATACTATTCCGTCCGTTCCTAAA 59.990 44.000 0.00 0.00 0.00 1.85
5685 6488 4.520492 GGATACTATTCCGTCCGTTCCTAA 59.480 45.833 0.00 0.00 0.00 2.69
5686 6489 4.074970 GGATACTATTCCGTCCGTTCCTA 58.925 47.826 0.00 0.00 0.00 2.94
5687 6490 2.889678 GGATACTATTCCGTCCGTTCCT 59.110 50.000 0.00 0.00 0.00 3.36
5688 6491 3.294816 GGATACTATTCCGTCCGTTCC 57.705 52.381 0.00 0.00 0.00 3.62
5694 6497 9.929896 GCATACGCTGTAGGATACTATTCCGTC 62.930 48.148 9.19 0.00 43.05 4.79
5695 6498 8.275295 GCATACGCTGTAGGATACTATTCCGT 62.275 46.154 10.33 10.33 43.29 4.69
5696 6499 5.955790 GCATACGCTGTAGGATACTATTCCG 60.956 48.000 4.91 0.00 43.29 4.30
5697 6500 5.341617 GCATACGCTGTAGGATACTATTCC 58.658 45.833 4.91 0.00 43.29 3.01
5698 6501 5.105877 TGGCATACGCTGTAGGATACTATTC 60.106 44.000 4.91 0.00 45.05 1.75
5699 6502 4.770531 TGGCATACGCTGTAGGATACTATT 59.229 41.667 4.91 0.00 45.05 1.73
5700 6503 4.158025 GTGGCATACGCTGTAGGATACTAT 59.842 45.833 0.00 0.00 45.05 2.12
5772 6575 9.071276 AGGCATTTAATATTCATCGAGAACATT 57.929 29.630 0.00 0.00 39.49 2.71
5796 6599 6.323996 TCAGGTATATGACTAACAGTCCAAGG 59.676 42.308 3.97 0.00 44.44 3.61
5956 6761 5.258456 TGTCCGTCCAGACTGTATATTTC 57.742 43.478 0.93 0.00 37.66 2.17
5976 6781 0.549950 CCCTTGGGCTCTGATGATGT 59.450 55.000 0.00 0.00 0.00 3.06
6034 6839 1.932511 GCTGATCTTTCTCTCTTGCCG 59.067 52.381 0.00 0.00 0.00 5.69
6111 6925 4.241681 TGTTTCACAGGTTCAGTTTTTGC 58.758 39.130 0.00 0.00 0.00 3.68
6112 6926 5.708948 TCTGTTTCACAGGTTCAGTTTTTG 58.291 37.500 4.09 0.00 45.94 2.44
6154 6968 0.531974 TGCAGTCAAACGAGGTGACC 60.532 55.000 12.15 0.00 45.39 4.02
6185 6999 1.338960 TGCACATCATTCGCTTCCTGA 60.339 47.619 0.00 0.00 0.00 3.86
6272 7095 0.250513 AAGAGGAAAGCGCCTTCGAT 59.749 50.000 12.39 3.87 38.73 3.59
6275 7098 1.082690 CTGAAGAGGAAAGCGCCTTC 58.917 55.000 10.35 10.35 38.73 3.46
6281 7104 7.622893 ATTCTGAATTACTGAAGAGGAAAGC 57.377 36.000 0.00 0.00 39.19 3.51
6291 7114 8.267183 TGCTCCATCTTTATTCTGAATTACTGA 58.733 33.333 8.38 1.65 0.00 3.41
6587 7410 2.875933 TGGAAGGAAGTAGTTTGCAACG 59.124 45.455 0.00 0.00 36.23 4.10
6648 7471 2.213499 GCCATCATAAGTGGAAGACGG 58.787 52.381 0.00 0.00 39.12 4.79
6665 7488 0.107703 CATGGTTCTTCCTAGCGCCA 60.108 55.000 2.29 0.00 37.07 5.69
6668 7491 0.815615 GGCCATGGTTCTTCCTAGCG 60.816 60.000 14.67 0.00 37.07 4.26
6672 7495 0.779997 ACTTGGCCATGGTTCTTCCT 59.220 50.000 21.67 0.00 37.07 3.36
6696 7519 2.872557 CATTGGCAGCCTGACACG 59.127 61.111 14.15 0.00 33.32 4.49
6724 7547 3.006752 GCTGTAGAGCTTATCTGATGGCT 59.993 47.826 16.02 16.02 42.52 4.75
6837 7666 1.679680 AGCGCTACGAGGCTTATGTAA 59.320 47.619 8.99 0.00 35.61 2.41
6985 7818 9.439500 AGAGTTACTACTGAGTCAACTTACTAG 57.561 37.037 8.09 0.00 37.10 2.57
6999 7832 5.140177 CGCAAAGCAAAAGAGTTACTACTG 58.860 41.667 0.00 0.00 33.84 2.74
7016 7849 2.218953 TCTATCCGCTAACCGCAAAG 57.781 50.000 0.00 0.00 39.08 2.77
7018 7851 1.411246 ACATCTATCCGCTAACCGCAA 59.589 47.619 0.00 0.00 39.08 4.85
7036 7869 1.324383 TTCTCTGTACTGTCGGCACA 58.676 50.000 0.00 0.00 0.00 4.57
7037 7870 2.433868 TTTCTCTGTACTGTCGGCAC 57.566 50.000 0.00 0.00 0.00 5.01
7038 7871 2.547218 GGTTTTCTCTGTACTGTCGGCA 60.547 50.000 0.00 0.00 0.00 5.69
7045 7878 2.986050 TCAGGGGGTTTTCTCTGTACT 58.014 47.619 0.00 0.00 0.00 2.73
7090 7923 0.467290 AAGGGGCTTTTCGCAGACAA 60.467 50.000 0.00 0.00 41.67 3.18
7113 7950 6.030228 GTCTTACAAGCATTCATGGTTAAGC 58.970 40.000 3.97 0.00 45.69 3.09
7114 7951 7.144722 TGTCTTACAAGCATTCATGGTTAAG 57.855 36.000 3.97 6.05 45.69 1.85
7115 7952 7.701539 ATGTCTTACAAGCATTCATGGTTAA 57.298 32.000 3.97 0.00 45.69 2.01
7116 7953 7.701539 AATGTCTTACAAGCATTCATGGTTA 57.298 32.000 3.97 0.00 45.69 2.85
7118 7955 6.594788 AAATGTCTTACAAGCATTCATGGT 57.405 33.333 10.15 0.00 40.78 3.55
7119 7956 8.192774 ACATAAATGTCTTACAAGCATTCATGG 58.807 33.333 17.27 9.80 35.19 3.66
7120 7957 9.577110 AACATAAATGTCTTACAAGCATTCATG 57.423 29.630 14.28 14.28 40.80 3.07
7175 8013 4.153117 CACAAGGACACTAATCACAGAAGC 59.847 45.833 0.00 0.00 0.00 3.86
7199 8037 3.119531 ACATTTGTTACCACCGCATCATG 60.120 43.478 0.00 0.00 0.00 3.07
7214 8052 5.359576 AGTGGTACATCACAACAACATTTGT 59.640 36.000 5.26 0.00 44.56 2.83
7236 8074 5.511386 ACTCCAAGAATCAATGGAAGAGT 57.489 39.130 8.73 2.25 44.77 3.24
7307 8145 2.033424 GCCAGACCAAACTGAGAAACAC 59.967 50.000 0.00 0.00 39.94 3.32
7316 8154 2.106511 AGTGTACATGCCAGACCAAACT 59.893 45.455 0.00 0.00 0.00 2.66
7502 8343 0.601311 GTGTGTGGACCTCTCACAGC 60.601 60.000 19.01 10.56 44.52 4.40
7609 8472 5.777850 TCATTACAAGATCATGCCCAATG 57.222 39.130 11.40 11.40 37.66 2.82
7639 8502 0.520404 GACAATGTGCCAGCAGACAG 59.480 55.000 0.00 0.00 0.00 3.51
7642 8505 1.271488 TGATGACAATGTGCCAGCAGA 60.271 47.619 0.00 0.00 0.00 4.26
7688 8555 3.624861 CACCATCTACTCCACAAATGAGC 59.375 47.826 0.00 0.00 32.98 4.26
7689 8556 3.624861 GCACCATCTACTCCACAAATGAG 59.375 47.826 0.00 0.00 35.92 2.90
7690 8557 3.008923 TGCACCATCTACTCCACAAATGA 59.991 43.478 0.00 0.00 0.00 2.57
7691 8558 3.346315 TGCACCATCTACTCCACAAATG 58.654 45.455 0.00 0.00 0.00 2.32
7692 8559 3.719268 TGCACCATCTACTCCACAAAT 57.281 42.857 0.00 0.00 0.00 2.32
7693 8560 3.500448 TTGCACCATCTACTCCACAAA 57.500 42.857 0.00 0.00 0.00 2.83
7696 8563 2.778299 TGTTTGCACCATCTACTCCAC 58.222 47.619 0.00 0.00 0.00 4.02
7697 8564 3.500448 TTGTTTGCACCATCTACTCCA 57.500 42.857 0.00 0.00 0.00 3.86
7698 8565 3.366374 GCTTTGTTTGCACCATCTACTCC 60.366 47.826 0.00 0.00 0.00 3.85
7699 8566 3.503748 AGCTTTGTTTGCACCATCTACTC 59.496 43.478 0.00 0.00 0.00 2.59
7700 8567 3.254166 CAGCTTTGTTTGCACCATCTACT 59.746 43.478 0.00 0.00 0.00 2.57
7744 8611 5.570205 TGGACTCATTTTAACCCTACACA 57.430 39.130 0.00 0.00 0.00 3.72
7745 8612 6.177610 TCATGGACTCATTTTAACCCTACAC 58.822 40.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.