Multiple sequence alignment - TraesCS2D01G420300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G420300 chr2D 100.000 3159 0 0 1 3159 534331444 534334602 0.000000e+00 5834.0
1 TraesCS2D01G420300 chr2D 78.599 1042 156 32 1108 2140 36756657 36755674 7.440000e-176 627.0
2 TraesCS2D01G420300 chr2D 84.000 75 11 1 2072 2146 80230693 80230620 1.570000e-08 71.3
3 TraesCS2D01G420300 chr4D 95.051 990 45 3 2174 3159 23246837 23245848 0.000000e+00 1554.0
4 TraesCS2D01G420300 chr4D 83.544 474 64 10 1676 2140 326985565 326985097 6.260000e-117 431.0
5 TraesCS2D01G420300 chr4D 83.092 207 30 4 465 670 480961560 480961762 1.940000e-42 183.0
6 TraesCS2D01G420300 chrUn 95.051 990 44 4 2174 3159 29964404 29965392 0.000000e+00 1552.0
7 TraesCS2D01G420300 chr1D 94.949 990 46 3 2174 3159 470467569 470466580 0.000000e+00 1548.0
8 TraesCS2D01G420300 chr1D 94.848 990 47 3 2174 3159 204559211 204558222 0.000000e+00 1543.0
9 TraesCS2D01G420300 chr1D 94.646 990 49 3 2174 3159 204565050 204564061 0.000000e+00 1531.0
10 TraesCS2D01G420300 chr1D 82.292 1056 158 18 1092 2140 328835586 328834553 0.000000e+00 887.0
11 TraesCS2D01G420300 chr1D 83.386 951 97 38 109 1045 42094022 42093119 0.000000e+00 824.0
12 TraesCS2D01G420300 chr1D 86.667 60 8 0 239 298 128414846 128414905 2.030000e-07 67.6
13 TraesCS2D01G420300 chr5D 94.848 990 47 3 2174 3159 77122351 77123340 0.000000e+00 1543.0
14 TraesCS2D01G420300 chr5D 84.231 260 36 4 1886 2140 298137733 298137992 6.770000e-62 248.0
15 TraesCS2D01G420300 chr6D 94.747 990 48 3 2174 3159 208244887 208243898 0.000000e+00 1537.0
16 TraesCS2D01G420300 chr6D 94.747 990 48 3 2174 3159 208250776 208249787 0.000000e+00 1537.0
17 TraesCS2D01G420300 chr6D 80.685 818 115 31 1353 2140 318564448 318563644 2.100000e-166 595.0
18 TraesCS2D01G420300 chr2A 94.383 997 51 4 2168 3159 11491616 11492612 0.000000e+00 1526.0
19 TraesCS2D01G420300 chr2A 83.983 718 78 21 185 890 58961954 58962646 0.000000e+00 654.0
20 TraesCS2D01G420300 chr2A 85.152 330 36 8 1817 2140 4026215 4026537 3.040000e-85 326.0
21 TraesCS2D01G420300 chr2A 83.333 282 40 5 1573 1854 4025900 4026174 1.450000e-63 254.0
22 TraesCS2D01G420300 chr2A 86.139 202 19 7 712 912 667019212 667019019 3.190000e-50 209.0
23 TraesCS2D01G420300 chr2A 80.769 260 45 3 1886 2140 197559013 197559272 6.910000e-47 198.0
24 TraesCS2D01G420300 chr7A 85.189 952 99 23 110 1045 706485667 706486592 0.000000e+00 939.0
25 TraesCS2D01G420300 chr7A 87.010 485 44 12 433 912 579015961 579015491 2.160000e-146 529.0
26 TraesCS2D01G420300 chr7A 95.918 49 2 0 735 783 706486372 706486420 2.610000e-11 80.5
27 TraesCS2D01G420300 chr7D 84.139 952 89 37 109 1045 46089029 46088125 0.000000e+00 865.0
28 TraesCS2D01G420300 chr5A 87.910 488 40 13 430 912 622372188 622372661 9.900000e-155 556.0
29 TraesCS2D01G420300 chr5A 83.265 490 53 13 429 912 81131529 81131063 1.050000e-114 424.0
30 TraesCS2D01G420300 chr5A 84.894 331 37 8 1817 2140 11951139 11951463 3.930000e-84 322.0
31 TraesCS2D01G420300 chr5A 82.270 282 43 5 1573 1854 11950785 11951059 1.460000e-58 237.0
32 TraesCS2D01G420300 chr5A 78.846 260 37 5 1886 2140 601238542 601238788 3.260000e-35 159.0
33 TraesCS2D01G420300 chr7B 85.513 497 50 19 412 906 113919282 113919758 1.690000e-137 499.0
34 TraesCS2D01G420300 chr3B 80.462 563 100 8 1585 2140 441852146 441852705 3.770000e-114 422.0
35 TraesCS2D01G420300 chr3B 79.930 568 102 10 1585 2143 442364762 442365326 1.050000e-109 407.0
36 TraesCS2D01G420300 chr3B 83.283 329 48 3 1817 2140 738292117 738291791 2.380000e-76 296.0
37 TraesCS2D01G420300 chr3B 83.274 281 47 0 1573 1853 738292400 738292120 3.130000e-65 259.0
38 TraesCS2D01G420300 chr2B 82.692 260 40 2 1886 2140 789011678 789011937 3.170000e-55 226.0
39 TraesCS2D01G420300 chr3D 97.436 39 1 0 260 298 139229367 139229329 2.030000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G420300 chr2D 534331444 534334602 3158 False 5834.00 5834 100.0000 1 3159 1 chr2D.!!$F1 3158
1 TraesCS2D01G420300 chr2D 36755674 36756657 983 True 627.00 627 78.5990 1108 2140 1 chr2D.!!$R1 1032
2 TraesCS2D01G420300 chr4D 23245848 23246837 989 True 1554.00 1554 95.0510 2174 3159 1 chr4D.!!$R1 985
3 TraesCS2D01G420300 chrUn 29964404 29965392 988 False 1552.00 1552 95.0510 2174 3159 1 chrUn.!!$F1 985
4 TraesCS2D01G420300 chr1D 470466580 470467569 989 True 1548.00 1548 94.9490 2174 3159 1 chr1D.!!$R5 985
5 TraesCS2D01G420300 chr1D 204558222 204559211 989 True 1543.00 1543 94.8480 2174 3159 1 chr1D.!!$R2 985
6 TraesCS2D01G420300 chr1D 204564061 204565050 989 True 1531.00 1531 94.6460 2174 3159 1 chr1D.!!$R3 985
7 TraesCS2D01G420300 chr1D 328834553 328835586 1033 True 887.00 887 82.2920 1092 2140 1 chr1D.!!$R4 1048
8 TraesCS2D01G420300 chr1D 42093119 42094022 903 True 824.00 824 83.3860 109 1045 1 chr1D.!!$R1 936
9 TraesCS2D01G420300 chr5D 77122351 77123340 989 False 1543.00 1543 94.8480 2174 3159 1 chr5D.!!$F1 985
10 TraesCS2D01G420300 chr6D 208243898 208244887 989 True 1537.00 1537 94.7470 2174 3159 1 chr6D.!!$R1 985
11 TraesCS2D01G420300 chr6D 208249787 208250776 989 True 1537.00 1537 94.7470 2174 3159 1 chr6D.!!$R2 985
12 TraesCS2D01G420300 chr6D 318563644 318564448 804 True 595.00 595 80.6850 1353 2140 1 chr6D.!!$R3 787
13 TraesCS2D01G420300 chr2A 11491616 11492612 996 False 1526.00 1526 94.3830 2168 3159 1 chr2A.!!$F1 991
14 TraesCS2D01G420300 chr2A 58961954 58962646 692 False 654.00 654 83.9830 185 890 1 chr2A.!!$F2 705
15 TraesCS2D01G420300 chr2A 4025900 4026537 637 False 290.00 326 84.2425 1573 2140 2 chr2A.!!$F4 567
16 TraesCS2D01G420300 chr7A 706485667 706486592 925 False 509.75 939 90.5535 110 1045 2 chr7A.!!$F1 935
17 TraesCS2D01G420300 chr7D 46088125 46089029 904 True 865.00 865 84.1390 109 1045 1 chr7D.!!$R1 936
18 TraesCS2D01G420300 chr5A 11950785 11951463 678 False 279.50 322 83.5820 1573 2140 2 chr5A.!!$F3 567
19 TraesCS2D01G420300 chr3B 441852146 441852705 559 False 422.00 422 80.4620 1585 2140 1 chr3B.!!$F1 555
20 TraesCS2D01G420300 chr3B 442364762 442365326 564 False 407.00 407 79.9300 1585 2143 1 chr3B.!!$F2 558
21 TraesCS2D01G420300 chr3B 738291791 738292400 609 True 277.50 296 83.2785 1573 2140 2 chr3B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 435 0.179009 GCTGCAGGCAGGATATGGAA 60.179 55.0 21.63 0.0 43.77 3.53 F
1582 1613 0.255890 GACTTCATGCCTAAGCCCCA 59.744 55.0 0.00 0.0 38.69 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1753 0.252421 TCTCCACAGTGCTGGATCCT 60.252 55.0 14.23 0.0 39.72 3.24 R
2889 3069 0.963856 CCGGTAGAAACTTTGGGGCC 60.964 60.0 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.619654 CCTTGCACAATGAAGGTGGA 58.380 50.000 0.00 0.00 36.76 4.02
23 24 1.542915 CCTTGCACAATGAAGGTGGAG 59.457 52.381 0.00 0.00 37.88 3.86
24 25 2.233271 CTTGCACAATGAAGGTGGAGT 58.767 47.619 0.00 0.00 37.88 3.85
25 26 3.411446 CTTGCACAATGAAGGTGGAGTA 58.589 45.455 0.00 0.00 37.88 2.59
26 27 3.500448 TGCACAATGAAGGTGGAGTAA 57.500 42.857 0.00 0.00 36.76 2.24
27 28 3.411446 TGCACAATGAAGGTGGAGTAAG 58.589 45.455 0.00 0.00 36.76 2.34
28 29 3.072330 TGCACAATGAAGGTGGAGTAAGA 59.928 43.478 0.00 0.00 36.76 2.10
29 30 3.437049 GCACAATGAAGGTGGAGTAAGAC 59.563 47.826 0.00 0.00 36.76 3.01
30 31 4.003648 CACAATGAAGGTGGAGTAAGACC 58.996 47.826 0.00 0.00 32.65 3.85
31 32 3.009143 ACAATGAAGGTGGAGTAAGACCC 59.991 47.826 0.00 0.00 32.03 4.46
32 33 1.652947 TGAAGGTGGAGTAAGACCCC 58.347 55.000 0.00 0.00 32.03 4.95
33 34 1.151413 TGAAGGTGGAGTAAGACCCCT 59.849 52.381 0.00 0.00 32.03 4.79
34 35 2.267192 GAAGGTGGAGTAAGACCCCTT 58.733 52.381 0.00 0.00 39.20 3.95
35 36 1.657804 AGGTGGAGTAAGACCCCTTG 58.342 55.000 0.00 0.00 33.94 3.61
36 37 1.151413 AGGTGGAGTAAGACCCCTTGA 59.849 52.381 0.00 0.00 33.94 3.02
37 38 1.555533 GGTGGAGTAAGACCCCTTGAG 59.444 57.143 0.00 0.00 33.94 3.02
38 39 2.258109 GTGGAGTAAGACCCCTTGAGT 58.742 52.381 0.00 0.00 33.94 3.41
39 40 3.438183 GTGGAGTAAGACCCCTTGAGTA 58.562 50.000 0.00 0.00 33.94 2.59
40 41 4.031611 GTGGAGTAAGACCCCTTGAGTAT 58.968 47.826 0.00 0.00 33.94 2.12
41 42 4.030913 TGGAGTAAGACCCCTTGAGTATG 58.969 47.826 0.00 0.00 33.94 2.39
42 43 4.031611 GGAGTAAGACCCCTTGAGTATGT 58.968 47.826 0.00 0.00 33.94 2.29
43 44 5.206587 GGAGTAAGACCCCTTGAGTATGTA 58.793 45.833 0.00 0.00 33.94 2.29
44 45 5.839606 GGAGTAAGACCCCTTGAGTATGTAT 59.160 44.000 0.00 0.00 33.94 2.29
45 46 6.239345 GGAGTAAGACCCCTTGAGTATGTATG 60.239 46.154 0.00 0.00 33.94 2.39
46 47 6.441222 AGTAAGACCCCTTGAGTATGTATGA 58.559 40.000 0.00 0.00 33.94 2.15
47 48 7.076446 AGTAAGACCCCTTGAGTATGTATGAT 58.924 38.462 0.00 0.00 33.94 2.45
48 49 5.815233 AGACCCCTTGAGTATGTATGATG 57.185 43.478 0.00 0.00 0.00 3.07
49 50 5.219739 AGACCCCTTGAGTATGTATGATGT 58.780 41.667 0.00 0.00 0.00 3.06
50 51 5.667626 AGACCCCTTGAGTATGTATGATGTT 59.332 40.000 0.00 0.00 0.00 2.71
51 52 6.844388 AGACCCCTTGAGTATGTATGATGTTA 59.156 38.462 0.00 0.00 0.00 2.41
52 53 7.015682 AGACCCCTTGAGTATGTATGATGTTAG 59.984 40.741 0.00 0.00 0.00 2.34
53 54 6.043243 ACCCCTTGAGTATGTATGATGTTAGG 59.957 42.308 0.00 0.00 0.00 2.69
54 55 6.467677 CCCTTGAGTATGTATGATGTTAGGG 58.532 44.000 0.00 0.00 0.00 3.53
55 56 5.934625 CCTTGAGTATGTATGATGTTAGGGC 59.065 44.000 0.00 0.00 0.00 5.19
56 57 5.483685 TGAGTATGTATGATGTTAGGGCC 57.516 43.478 0.00 0.00 0.00 5.80
57 58 4.286032 TGAGTATGTATGATGTTAGGGCCC 59.714 45.833 16.46 16.46 0.00 5.80
58 59 4.503398 AGTATGTATGATGTTAGGGCCCT 58.497 43.478 31.35 31.35 0.00 5.19
59 60 5.661565 AGTATGTATGATGTTAGGGCCCTA 58.338 41.667 28.66 28.66 0.00 3.53
60 61 6.088819 AGTATGTATGATGTTAGGGCCCTAA 58.911 40.000 36.11 36.11 36.31 2.69
61 62 5.922960 ATGTATGATGTTAGGGCCCTAAA 57.077 39.130 40.00 29.56 39.82 1.85
62 63 5.922960 TGTATGATGTTAGGGCCCTAAAT 57.077 39.130 40.00 32.10 39.82 1.40
63 64 7.582909 ATGTATGATGTTAGGGCCCTAAATA 57.417 36.000 40.00 31.51 39.82 1.40
64 65 7.016153 TGTATGATGTTAGGGCCCTAAATAG 57.984 40.000 40.00 0.00 39.82 1.73
65 66 6.790461 TGTATGATGTTAGGGCCCTAAATAGA 59.210 38.462 40.00 28.52 39.82 1.98
66 67 6.977244 ATGATGTTAGGGCCCTAAATAGAT 57.023 37.500 40.00 28.41 39.82 1.98
67 68 6.780198 TGATGTTAGGGCCCTAAATAGATT 57.220 37.500 40.00 22.64 39.82 2.40
68 69 7.161715 TGATGTTAGGGCCCTAAATAGATTT 57.838 36.000 40.00 21.39 39.82 2.17
69 70 7.004086 TGATGTTAGGGCCCTAAATAGATTTG 58.996 38.462 40.00 0.00 39.82 2.32
70 71 6.335781 TGTTAGGGCCCTAAATAGATTTGT 57.664 37.500 40.00 11.22 39.82 2.83
71 72 7.454553 TGTTAGGGCCCTAAATAGATTTGTA 57.545 36.000 40.00 15.97 39.82 2.41
72 73 7.284820 TGTTAGGGCCCTAAATAGATTTGTAC 58.715 38.462 40.00 25.63 39.82 2.90
73 74 5.320488 AGGGCCCTAAATAGATTTGTACC 57.680 43.478 27.42 0.00 0.00 3.34
74 75 4.982302 AGGGCCCTAAATAGATTTGTACCT 59.018 41.667 27.42 0.00 0.00 3.08
75 76 6.155367 AGGGCCCTAAATAGATTTGTACCTA 58.845 40.000 27.42 0.00 0.00 3.08
76 77 6.272558 AGGGCCCTAAATAGATTTGTACCTAG 59.727 42.308 27.42 0.00 0.00 3.02
77 78 6.473758 GGCCCTAAATAGATTTGTACCTAGG 58.526 44.000 7.41 7.41 0.00 3.02
78 79 6.044054 GGCCCTAAATAGATTTGTACCTAGGT 59.956 42.308 20.57 20.57 0.00 3.08
79 80 7.421030 GGCCCTAAATAGATTTGTACCTAGGTT 60.421 40.741 22.11 0.00 0.00 3.50
80 81 7.660617 GCCCTAAATAGATTTGTACCTAGGTTC 59.339 40.741 22.11 16.26 0.00 3.62
81 82 8.711170 CCCTAAATAGATTTGTACCTAGGTTCA 58.289 37.037 22.11 19.06 0.00 3.18
82 83 9.765795 CCTAAATAGATTTGTACCTAGGTTCAG 57.234 37.037 22.11 5.03 0.00 3.02
85 86 9.668497 AAATAGATTTGTACCTAGGTTCAGTTC 57.332 33.333 22.11 19.25 0.00 3.01
86 87 6.936968 AGATTTGTACCTAGGTTCAGTTCT 57.063 37.500 22.11 20.96 0.00 3.01
87 88 6.937392 AGATTTGTACCTAGGTTCAGTTCTC 58.063 40.000 22.11 14.64 0.00 2.87
88 89 5.479124 TTTGTACCTAGGTTCAGTTCTCC 57.521 43.478 22.11 0.00 0.00 3.71
89 90 4.399483 TGTACCTAGGTTCAGTTCTCCT 57.601 45.455 22.11 0.00 35.60 3.69
90 91 4.342359 TGTACCTAGGTTCAGTTCTCCTC 58.658 47.826 22.11 0.00 33.34 3.71
91 92 3.837399 ACCTAGGTTCAGTTCTCCTCT 57.163 47.619 9.21 0.00 33.34 3.69
92 93 3.703921 ACCTAGGTTCAGTTCTCCTCTC 58.296 50.000 9.21 0.00 33.34 3.20
93 94 3.028130 CCTAGGTTCAGTTCTCCTCTCC 58.972 54.545 0.00 0.00 33.34 3.71
94 95 2.704190 AGGTTCAGTTCTCCTCTCCA 57.296 50.000 0.00 0.00 0.00 3.86
95 96 3.197927 AGGTTCAGTTCTCCTCTCCAT 57.802 47.619 0.00 0.00 0.00 3.41
96 97 3.525862 AGGTTCAGTTCTCCTCTCCATT 58.474 45.455 0.00 0.00 0.00 3.16
97 98 3.517500 AGGTTCAGTTCTCCTCTCCATTC 59.482 47.826 0.00 0.00 0.00 2.67
98 99 3.261897 GGTTCAGTTCTCCTCTCCATTCA 59.738 47.826 0.00 0.00 0.00 2.57
99 100 4.080638 GGTTCAGTTCTCCTCTCCATTCAT 60.081 45.833 0.00 0.00 0.00 2.57
100 101 4.750021 TCAGTTCTCCTCTCCATTCATG 57.250 45.455 0.00 0.00 0.00 3.07
101 102 4.356436 TCAGTTCTCCTCTCCATTCATGA 58.644 43.478 0.00 0.00 0.00 3.07
102 103 4.967442 TCAGTTCTCCTCTCCATTCATGAT 59.033 41.667 0.00 0.00 0.00 2.45
103 104 6.138967 TCAGTTCTCCTCTCCATTCATGATA 58.861 40.000 0.00 0.00 0.00 2.15
104 105 6.786461 TCAGTTCTCCTCTCCATTCATGATAT 59.214 38.462 0.00 0.00 0.00 1.63
105 106 7.039152 TCAGTTCTCCTCTCCATTCATGATATC 60.039 40.741 0.00 0.00 0.00 1.63
106 107 6.786461 AGTTCTCCTCTCCATTCATGATATCA 59.214 38.462 8.10 8.10 0.00 2.15
107 108 6.854091 TCTCCTCTCCATTCATGATATCAG 57.146 41.667 11.78 3.94 0.00 2.90
129 130 5.641209 CAGTGATTTGTTCCTGGTTCTAGAG 59.359 44.000 0.00 0.00 0.00 2.43
175 176 7.065803 GCTAGGTATAAAGCACAAGAAACATGA 59.934 37.037 0.00 0.00 38.63 3.07
232 233 3.189910 TGCGTGTACTGAACTATCGAAGT 59.810 43.478 0.00 0.00 41.49 3.01
298 299 1.327303 TGGCCTGTGAATTTGTGGAC 58.673 50.000 3.32 0.00 0.00 4.02
303 304 3.005684 GCCTGTGAATTTGTGGACATGAA 59.994 43.478 0.00 0.00 0.00 2.57
305 306 4.232221 CTGTGAATTTGTGGACATGAAGC 58.768 43.478 0.00 0.00 0.00 3.86
332 343 5.126869 TGGCTTTGTTTTCTCAACATTCTCA 59.873 36.000 0.00 0.00 0.00 3.27
333 344 6.183360 TGGCTTTGTTTTCTCAACATTCTCAT 60.183 34.615 0.00 0.00 0.00 2.90
343 354 6.751157 TCTCAACATTCTCATTGCACATTTT 58.249 32.000 0.00 0.00 0.00 1.82
398 410 2.642139 AACTCATTTGCCTTGCATCG 57.358 45.000 0.00 0.00 38.76 3.84
412 424 2.437359 ATCGTTCAGGCTGCAGGC 60.437 61.111 31.58 31.58 41.43 4.85
413 425 3.258228 ATCGTTCAGGCTGCAGGCA 62.258 57.895 37.94 19.19 44.01 4.75
415 427 3.060615 GTTCAGGCTGCAGGCAGG 61.061 66.667 37.94 29.08 43.77 4.85
416 428 3.251509 TTCAGGCTGCAGGCAGGA 61.252 61.111 37.94 30.67 43.77 3.86
417 429 2.609534 TTCAGGCTGCAGGCAGGAT 61.610 57.895 37.94 18.04 43.77 3.24
419 431 1.058428 TCAGGCTGCAGGCAGGATAT 61.058 55.000 37.94 16.90 43.77 1.63
420 432 0.889638 CAGGCTGCAGGCAGGATATG 60.890 60.000 37.94 23.85 43.77 1.78
421 433 1.602888 GGCTGCAGGCAGGATATGG 60.603 63.158 33.31 0.00 43.77 2.74
423 435 0.179009 GCTGCAGGCAGGATATGGAA 60.179 55.000 21.63 0.00 43.77 3.53
424 436 1.602311 CTGCAGGCAGGATATGGAAC 58.398 55.000 13.39 0.00 40.17 3.62
425 437 1.134007 CTGCAGGCAGGATATGGAACA 60.134 52.381 13.39 0.00 41.20 3.18
426 438 3.325918 CTGCAGGCAGGATATGGAACAC 61.326 54.545 13.39 0.00 40.24 3.32
459 471 9.466497 TTCAATTTACAGGATCTGAAATAGCTT 57.534 29.630 0.00 0.00 35.18 3.74
463 475 4.775236 ACAGGATCTGAAATAGCTTGGTC 58.225 43.478 0.00 0.00 35.18 4.02
519 532 3.624861 GGAGTCATCTTGGCACAGTTATG 59.375 47.826 0.00 0.00 42.39 1.90
553 566 4.546570 AGTAAACGGCAAAAGAGAAATGC 58.453 39.130 0.00 0.00 39.33 3.56
566 579 2.863137 GAGAAATGCTCATGTCTCGGTC 59.137 50.000 12.74 0.00 41.01 4.79
570 583 0.461548 TGCTCATGTCTCGGTCCATC 59.538 55.000 0.00 0.00 0.00 3.51
669 689 5.221303 TGCTTTAATAATGGATGCTGCCTTC 60.221 40.000 0.00 0.00 0.00 3.46
686 706 8.458843 TGCTGCCTTCTTCAAAGTATAATAAAC 58.541 33.333 0.00 0.00 0.00 2.01
728 748 5.235516 CGGTTCTTACACAAGGACATTACT 58.764 41.667 0.00 0.00 41.50 2.24
786 806 8.861101 CAGCTCAAAATGTTACTGTACTACTAC 58.139 37.037 0.00 0.00 0.00 2.73
787 807 8.804204 AGCTCAAAATGTTACTGTACTACTACT 58.196 33.333 0.00 0.00 0.00 2.57
828 849 5.095691 TGAAAAGTTTCAGATCGCAAGTC 57.904 39.130 2.32 0.00 41.88 3.01
928 950 3.696548 GCTAAGGATTGTCCCCTTCTTTG 59.303 47.826 0.00 0.00 42.63 2.77
942 964 5.470437 CCCCTTCTTTGTTTAGAGAACTCAC 59.530 44.000 4.64 0.00 0.00 3.51
943 965 6.292150 CCCTTCTTTGTTTAGAGAACTCACT 58.708 40.000 4.64 0.00 0.00 3.41
944 966 6.203723 CCCTTCTTTGTTTAGAGAACTCACTG 59.796 42.308 4.64 0.00 0.00 3.66
960 983 3.573772 CTGTTCGACCTCGCTGGCA 62.574 63.158 0.00 0.00 40.22 4.92
982 1005 1.732417 GCCTTAGATGGGCTTGCTGC 61.732 60.000 0.00 0.00 45.57 5.25
1001 1026 6.830912 TGCTGCTATTTTAGTCTGGTCATAT 58.169 36.000 0.00 0.00 0.00 1.78
1022 1047 8.347771 TCATATGCAGATTTGTTATCTTCAAGC 58.652 33.333 0.00 0.00 0.00 4.01
1051 1076 3.706055 GTGAGCCACACCTTGAGAA 57.294 52.632 0.85 0.00 43.05 2.87
1052 1077 1.230324 GTGAGCCACACCTTGAGAAC 58.770 55.000 0.85 0.00 43.05 3.01
1053 1078 1.131638 TGAGCCACACCTTGAGAACT 58.868 50.000 0.00 0.00 0.00 3.01
1054 1079 1.490490 TGAGCCACACCTTGAGAACTT 59.510 47.619 0.00 0.00 0.00 2.66
1055 1080 2.092429 TGAGCCACACCTTGAGAACTTT 60.092 45.455 0.00 0.00 0.00 2.66
1056 1081 2.291741 GAGCCACACCTTGAGAACTTTG 59.708 50.000 0.00 0.00 0.00 2.77
1057 1082 2.024414 GCCACACCTTGAGAACTTTGT 58.976 47.619 0.00 0.00 0.00 2.83
1058 1083 2.427095 GCCACACCTTGAGAACTTTGTT 59.573 45.455 0.00 0.00 0.00 2.83
1059 1084 3.734902 GCCACACCTTGAGAACTTTGTTG 60.735 47.826 0.00 0.00 0.00 3.33
1060 1085 3.443681 CCACACCTTGAGAACTTTGTTGT 59.556 43.478 0.00 0.00 0.00 3.32
1061 1086 4.082245 CCACACCTTGAGAACTTTGTTGTT 60.082 41.667 0.00 0.00 0.00 2.83
1062 1087 4.858692 CACACCTTGAGAACTTTGTTGTTG 59.141 41.667 0.00 0.00 0.00 3.33
1063 1088 4.522789 ACACCTTGAGAACTTTGTTGTTGT 59.477 37.500 0.00 0.00 0.00 3.32
1064 1089 5.095490 CACCTTGAGAACTTTGTTGTTGTC 58.905 41.667 0.00 0.00 39.65 3.18
1065 1090 4.157840 ACCTTGAGAACTTTGTTGTTGTCC 59.842 41.667 0.00 0.00 38.82 4.02
1066 1091 4.399303 CCTTGAGAACTTTGTTGTTGTCCT 59.601 41.667 0.00 0.00 38.82 3.85
1067 1092 4.963276 TGAGAACTTTGTTGTTGTCCTG 57.037 40.909 0.00 0.00 38.82 3.86
1068 1093 4.331968 TGAGAACTTTGTTGTTGTCCTGT 58.668 39.130 0.00 0.00 38.82 4.00
1069 1094 4.155826 TGAGAACTTTGTTGTTGTCCTGTG 59.844 41.667 0.00 0.00 38.82 3.66
1070 1095 3.443681 AGAACTTTGTTGTTGTCCTGTGG 59.556 43.478 0.00 0.00 0.00 4.17
1071 1096 3.080300 ACTTTGTTGTTGTCCTGTGGA 57.920 42.857 0.00 0.00 0.00 4.02
1072 1097 3.631250 ACTTTGTTGTTGTCCTGTGGAT 58.369 40.909 0.00 0.00 32.73 3.41
1073 1098 4.023291 ACTTTGTTGTTGTCCTGTGGATT 58.977 39.130 0.00 0.00 32.73 3.01
1074 1099 5.197451 ACTTTGTTGTTGTCCTGTGGATTA 58.803 37.500 0.00 0.00 32.73 1.75
1075 1100 5.654650 ACTTTGTTGTTGTCCTGTGGATTAA 59.345 36.000 0.00 0.00 32.73 1.40
1076 1101 5.508200 TTGTTGTTGTCCTGTGGATTAAC 57.492 39.130 8.67 8.67 34.50 2.01
1077 1102 4.527944 TGTTGTTGTCCTGTGGATTAACA 58.472 39.130 12.21 12.21 38.71 2.41
1078 1103 4.950475 TGTTGTTGTCCTGTGGATTAACAA 59.050 37.500 18.89 18.89 42.94 2.83
1079 1104 5.596361 TGTTGTTGTCCTGTGGATTAACAAT 59.404 36.000 22.40 0.00 44.70 2.71
1080 1105 5.957842 TGTTGTCCTGTGGATTAACAATC 57.042 39.130 13.22 0.00 38.08 2.67
1081 1106 5.630121 TGTTGTCCTGTGGATTAACAATCT 58.370 37.500 13.22 0.00 38.08 2.40
1082 1107 5.473162 TGTTGTCCTGTGGATTAACAATCTG 59.527 40.000 13.22 0.00 38.08 2.90
1083 1108 4.009675 TGTCCTGTGGATTAACAATCTGC 58.990 43.478 0.00 0.00 38.01 4.26
1084 1109 3.378427 GTCCTGTGGATTAACAATCTGCC 59.622 47.826 0.00 0.00 38.01 4.85
1085 1110 3.010027 TCCTGTGGATTAACAATCTGCCA 59.990 43.478 0.00 0.00 38.01 4.92
1086 1111 3.129287 CCTGTGGATTAACAATCTGCCAC 59.871 47.826 0.00 0.00 38.01 5.01
1087 1112 2.746904 TGTGGATTAACAATCTGCCACG 59.253 45.455 0.00 0.00 38.01 4.94
1088 1113 3.006940 GTGGATTAACAATCTGCCACGA 58.993 45.455 0.00 0.00 38.01 4.35
1089 1114 3.627577 GTGGATTAACAATCTGCCACGAT 59.372 43.478 0.00 0.00 38.01 3.73
1090 1115 3.627123 TGGATTAACAATCTGCCACGATG 59.373 43.478 0.00 0.00 38.01 3.84
1096 1121 2.009051 CAATCTGCCACGATGCTAACA 58.991 47.619 0.00 0.00 0.00 2.41
1100 1125 2.232696 TCTGCCACGATGCTAACACTAA 59.767 45.455 0.00 0.00 0.00 2.24
1104 1129 5.179533 TGCCACGATGCTAACACTAAATTA 58.820 37.500 0.00 0.00 0.00 1.40
1106 1131 6.987404 TGCCACGATGCTAACACTAAATTATA 59.013 34.615 0.00 0.00 0.00 0.98
1132 1157 1.267261 ACGACGAACAGAGTGAAGAGG 59.733 52.381 0.00 0.00 0.00 3.69
1140 1165 3.106054 ACAGAGTGAAGAGGATGAGCAT 58.894 45.455 0.00 0.00 0.00 3.79
1162 1187 3.014623 CCAGAGTATATCATCCGCGGTA 58.985 50.000 27.15 10.72 0.00 4.02
1184 1209 9.316730 CGGTAAGCACATACCTTACTTTTAATA 57.683 33.333 10.13 0.00 42.68 0.98
1225 1254 6.071447 AGCAGACTAGTAGCATCATAATCCAG 60.071 42.308 18.71 0.00 0.00 3.86
1230 1259 4.008330 AGTAGCATCATAATCCAGCATGC 58.992 43.478 10.51 10.51 40.20 4.06
1234 1263 3.444034 GCATCATAATCCAGCATGCATCT 59.556 43.478 21.98 0.00 39.76 2.90
1235 1264 4.675408 GCATCATAATCCAGCATGCATCTG 60.675 45.833 21.98 9.58 39.76 2.90
1236 1265 2.817844 TCATAATCCAGCATGCATCTGC 59.182 45.455 21.98 11.44 42.62 4.26
1247 1276 3.484649 GCATGCATCTGCGTATTTCTTTG 59.515 43.478 14.21 0.00 45.83 2.77
1250 1279 4.002982 TGCATCTGCGTATTTCTTTGTCT 58.997 39.130 0.00 0.00 45.83 3.41
1254 1283 6.475727 GCATCTGCGTATTTCTTTGTCTACTA 59.524 38.462 0.00 0.00 0.00 1.82
1275 1304 4.111375 ACCTTCAGCTATTCACTACGTG 57.889 45.455 0.00 0.00 34.45 4.49
1281 1310 3.791887 CAGCTATTCACTACGTGTGCTAC 59.208 47.826 0.00 0.00 45.81 3.58
1285 1314 2.537639 TCACTACGTGTGCTACATCG 57.462 50.000 0.00 0.00 45.81 3.84
1286 1315 1.808343 TCACTACGTGTGCTACATCGT 59.192 47.619 0.00 15.09 45.81 3.73
1288 1317 2.984471 CACTACGTGTGCTACATCGTTT 59.016 45.455 0.00 7.00 40.06 3.60
1322 1351 8.341173 CCTTTCATACAGATTGTTCTAAGCATC 58.659 37.037 0.00 0.00 0.00 3.91
1324 1353 6.291377 TCATACAGATTGTTCTAAGCATCCC 58.709 40.000 0.00 0.00 0.00 3.85
1326 1355 4.521146 ACAGATTGTTCTAAGCATCCCTG 58.479 43.478 0.00 0.00 0.00 4.45
1345 1374 4.293415 CCTGTCTCACAAACTTTGCAATC 58.707 43.478 0.00 0.00 0.00 2.67
1364 1393 3.924918 TCACACTGCTCTGTTCTACTC 57.075 47.619 0.00 0.00 0.00 2.59
1372 1401 5.417580 ACTGCTCTGTTCTACTCTTCCTTAG 59.582 44.000 0.00 0.00 0.00 2.18
1378 1407 8.057536 TCTGTTCTACTCTTCCTTAGTCAATC 57.942 38.462 0.00 0.00 0.00 2.67
1384 1413 9.529823 TCTACTCTTCCTTAGTCAATCTTTGTA 57.470 33.333 0.00 0.00 0.00 2.41
1437 1468 2.681848 GTCTGATGGCTTCCAATGACAG 59.318 50.000 0.00 0.00 36.95 3.51
1443 1474 1.527034 GCTTCCAATGACAGTGCTGA 58.473 50.000 6.17 0.00 0.00 4.26
1447 1478 3.257469 TCCAATGACAGTGCTGATCTC 57.743 47.619 6.17 0.00 0.00 2.75
1455 1486 5.311265 TGACAGTGCTGATCTCAATCTTTT 58.689 37.500 6.17 0.00 32.75 2.27
1456 1487 6.466812 TGACAGTGCTGATCTCAATCTTTTA 58.533 36.000 6.17 0.00 32.75 1.52
1458 1489 7.445096 TGACAGTGCTGATCTCAATCTTTTAAA 59.555 33.333 6.17 0.00 32.75 1.52
1485 1516 7.678194 TTGTTTCTGCTTTCTCAATTTTACG 57.322 32.000 0.00 0.00 0.00 3.18
1491 1522 6.038825 TCTGCTTTCTCAATTTTACGAACCAA 59.961 34.615 0.00 0.00 0.00 3.67
1495 1526 8.003784 GCTTTCTCAATTTTACGAACCAATTTG 58.996 33.333 0.00 0.00 0.00 2.32
1521 1552 7.168219 ACCATCTGCTATGTTTTAGAACTTCA 58.832 34.615 0.00 0.00 36.70 3.02
1536 1567 6.196079 AGAACTTCAACTTGTCTGGTTTTC 57.804 37.500 0.00 0.00 0.00 2.29
1582 1613 0.255890 GACTTCATGCCTAAGCCCCA 59.744 55.000 0.00 0.00 38.69 4.96
1590 1638 2.808206 CCTAAGCCCCAGCCTACGG 61.808 68.421 0.00 0.00 41.25 4.02
1656 1704 1.270550 ACAGCTGTTGCAAATGCTACC 59.729 47.619 21.83 1.08 44.16 3.18
1663 1713 5.371115 TGTTGCAAATGCTACCTAACTTC 57.629 39.130 15.46 0.00 44.16 3.01
1674 1724 4.223255 GCTACCTAACTTCCTTCTCACCTT 59.777 45.833 0.00 0.00 0.00 3.50
1679 1729 5.877564 CCTAACTTCCTTCTCACCTTCATTC 59.122 44.000 0.00 0.00 0.00 2.67
1684 1734 4.899502 TCCTTCTCACCTTCATTCAACTC 58.100 43.478 0.00 0.00 0.00 3.01
1688 1738 6.128063 CCTTCTCACCTTCATTCAACTCAATC 60.128 42.308 0.00 0.00 0.00 2.67
1716 1766 1.451567 CTGGCAGGATCCAGCACTG 60.452 63.158 28.11 17.36 46.11 3.66
1729 1779 0.982704 AGCACTGTGGAGAGCTTGAT 59.017 50.000 10.21 0.00 42.87 2.57
1766 1816 8.657712 ACTGGGGTAATGAGGTTAAGTTATATC 58.342 37.037 0.00 0.00 0.00 1.63
1779 1829 7.095355 GGTTAAGTTATATCAATGGCACGTAGG 60.095 40.741 0.00 0.00 0.00 3.18
1800 1850 2.675348 GCGCTCTCTTTGCTATGTTCTT 59.325 45.455 0.00 0.00 0.00 2.52
1803 1853 3.484886 GCTCTCTTTGCTATGTTCTTGCG 60.485 47.826 0.00 0.00 0.00 4.85
1815 1865 0.249405 TTCTTGCGCAAAAAGCCAGG 60.249 50.000 25.01 9.84 41.38 4.45
1828 1878 4.510167 AAAGCCAGGCATCAACTACTAT 57.490 40.909 15.80 0.00 0.00 2.12
1860 2027 6.711645 ACAATCAATAAAACATTTGCCAAGCT 59.288 30.769 0.00 0.00 0.00 3.74
1913 2081 7.437565 CACACTCTATCTTCCATATCACACAAG 59.562 40.741 0.00 0.00 0.00 3.16
1923 2091 9.636879 CTTCCATATCACACAAGACTCTATATG 57.363 37.037 0.00 0.00 0.00 1.78
1924 2092 8.940397 TCCATATCACACAAGACTCTATATGA 57.060 34.615 0.00 0.00 30.80 2.15
1933 2107 9.376075 ACACAAGACTCTATATGAAATTCACTG 57.624 33.333 0.00 0.00 0.00 3.66
1946 2120 6.248433 TGAAATTCACTGGCTTTCTCCTAAT 58.752 36.000 0.00 0.00 31.66 1.73
1957 2131 9.566432 CTGGCTTTCTCCTAATAGTATTTTCAT 57.434 33.333 0.00 0.00 0.00 2.57
2036 2212 0.681175 GGTCAAGCTTGCAAATGGGT 59.319 50.000 21.99 0.00 0.00 4.51
2048 2225 0.469705 AAATGGGTGTCTGCTTGCCA 60.470 50.000 0.00 0.00 0.00 4.92
2049 2226 0.896940 AATGGGTGTCTGCTTGCCAG 60.897 55.000 0.00 0.00 43.17 4.85
2059 2236 1.354506 GCTTGCCAGATGTCGCATC 59.645 57.895 10.63 10.63 34.35 3.91
2067 2244 2.288640 CCAGATGTCGCATCATGCTAGA 60.289 50.000 8.30 0.00 42.25 2.43
2081 2258 4.528206 TCATGCTAGAAACTGACAAGAGGA 59.472 41.667 0.00 0.00 0.00 3.71
2086 2263 3.809905 AGAAACTGACAAGAGGACAACC 58.190 45.455 0.00 0.00 0.00 3.77
2096 2273 1.278127 AGAGGACAACCATAACCACCG 59.722 52.381 0.00 0.00 38.94 4.94
2097 2274 1.002773 GAGGACAACCATAACCACCGT 59.997 52.381 0.00 0.00 38.94 4.83
2140 2317 1.656652 CCAACATTCGCGAAGGAGAT 58.343 50.000 36.62 20.23 0.00 2.75
2141 2318 1.328680 CCAACATTCGCGAAGGAGATG 59.671 52.381 36.62 27.97 0.00 2.90
2142 2319 2.002586 CAACATTCGCGAAGGAGATGT 58.997 47.619 36.62 26.39 0.00 3.06
2144 2321 2.699954 ACATTCGCGAAGGAGATGTTT 58.300 42.857 36.62 12.40 0.00 2.83
2145 2322 2.416547 ACATTCGCGAAGGAGATGTTTG 59.583 45.455 36.62 23.01 0.00 2.93
2146 2323 0.796312 TTCGCGAAGGAGATGTTTGC 59.204 50.000 19.38 0.00 0.00 3.68
2148 2325 2.162716 GCGAAGGAGATGTTTGCGT 58.837 52.632 0.00 0.00 0.00 5.24
2149 2326 0.517316 GCGAAGGAGATGTTTGCGTT 59.483 50.000 0.00 0.00 0.00 4.84
2150 2327 1.725931 GCGAAGGAGATGTTTGCGTTG 60.726 52.381 0.00 0.00 0.00 4.10
2151 2328 1.725931 CGAAGGAGATGTTTGCGTTGC 60.726 52.381 0.00 0.00 0.00 4.17
2152 2329 1.537202 GAAGGAGATGTTTGCGTTGCT 59.463 47.619 0.00 0.00 0.00 3.91
2153 2330 2.472695 AGGAGATGTTTGCGTTGCTA 57.527 45.000 0.00 0.00 0.00 3.49
2154 2331 2.991250 AGGAGATGTTTGCGTTGCTAT 58.009 42.857 0.00 0.00 0.00 2.97
2155 2332 3.347216 AGGAGATGTTTGCGTTGCTATT 58.653 40.909 0.00 0.00 0.00 1.73
2156 2333 3.758554 AGGAGATGTTTGCGTTGCTATTT 59.241 39.130 0.00 0.00 0.00 1.40
2157 2334 3.853671 GGAGATGTTTGCGTTGCTATTTG 59.146 43.478 0.00 0.00 0.00 2.32
2158 2335 4.379394 GGAGATGTTTGCGTTGCTATTTGA 60.379 41.667 0.00 0.00 0.00 2.69
2159 2336 5.314923 AGATGTTTGCGTTGCTATTTGAT 57.685 34.783 0.00 0.00 0.00 2.57
2160 2337 5.335127 AGATGTTTGCGTTGCTATTTGATC 58.665 37.500 0.00 0.00 0.00 2.92
2161 2338 3.832276 TGTTTGCGTTGCTATTTGATCC 58.168 40.909 0.00 0.00 0.00 3.36
2162 2339 3.505680 TGTTTGCGTTGCTATTTGATCCT 59.494 39.130 0.00 0.00 0.00 3.24
2163 2340 4.022416 TGTTTGCGTTGCTATTTGATCCTT 60.022 37.500 0.00 0.00 0.00 3.36
2164 2341 4.782019 TTGCGTTGCTATTTGATCCTTT 57.218 36.364 0.00 0.00 0.00 3.11
2165 2342 4.782019 TGCGTTGCTATTTGATCCTTTT 57.218 36.364 0.00 0.00 0.00 2.27
2166 2343 4.484236 TGCGTTGCTATTTGATCCTTTTG 58.516 39.130 0.00 0.00 0.00 2.44
2167 2344 4.217334 TGCGTTGCTATTTGATCCTTTTGA 59.783 37.500 0.00 0.00 0.00 2.69
2168 2345 4.795278 GCGTTGCTATTTGATCCTTTTGAG 59.205 41.667 0.00 0.00 0.00 3.02
2169 2346 5.335127 CGTTGCTATTTGATCCTTTTGAGG 58.665 41.667 0.00 0.00 0.00 3.86
2170 2347 5.654497 GTTGCTATTTGATCCTTTTGAGGG 58.346 41.667 0.00 0.00 0.00 4.30
2171 2348 4.934356 TGCTATTTGATCCTTTTGAGGGT 58.066 39.130 0.00 0.00 0.00 4.34
2172 2349 6.073447 TGCTATTTGATCCTTTTGAGGGTA 57.927 37.500 0.00 0.00 0.00 3.69
2197 2374 4.595762 TGTCTACTACGCAACCTTCTTT 57.404 40.909 0.00 0.00 0.00 2.52
2205 2382 5.995897 ACTACGCAACCTTCTTTTTGTAGAT 59.004 36.000 3.35 0.00 33.91 1.98
2253 2430 6.549736 AGGTTTGTAGGACAGTAGCAAATTTT 59.450 34.615 0.00 0.00 32.71 1.82
2280 2457 7.147549 CCTCAAGTGGATGACCTAAGGTTTATA 60.148 40.741 0.00 0.00 35.25 0.98
2288 2465 7.387122 GGATGACCTAAGGTTTATAAATCCGTC 59.613 40.741 4.81 6.72 35.25 4.79
2402 2582 5.847111 ATTGTATAGGTGCACTAGTTCGA 57.153 39.130 17.98 5.64 34.56 3.71
2403 2583 5.847111 TTGTATAGGTGCACTAGTTCGAT 57.153 39.130 17.98 3.94 34.56 3.59
2435 2615 6.836242 TGGTGATACAAGTGCAATATGGATA 58.164 36.000 0.00 0.00 0.00 2.59
2541 2721 1.787058 AGGAAACAAGGCCTAGGGTTT 59.213 47.619 22.79 22.79 36.27 3.27
2545 2725 5.254501 AGGAAACAAGGCCTAGGGTTTATAA 59.745 40.000 22.69 0.00 33.92 0.98
2617 2797 4.240881 ACTATCCCTCAACATGCAACAT 57.759 40.909 0.00 0.00 0.00 2.71
2667 2847 6.641314 GCGGAGAATAAACGAAGAGATTATGA 59.359 38.462 0.00 0.00 0.00 2.15
2700 2880 7.147966 ACGAAACCACCTCAAAGTTATTCTTTT 60.148 33.333 0.00 0.00 42.95 2.27
2719 2899 1.462616 TCAATCAATCCGTTGGGCTG 58.537 50.000 0.00 0.00 35.99 4.85
2786 2966 9.912634 AATAACACCTTAAGACACAAATCAATG 57.087 29.630 3.36 0.00 0.00 2.82
2805 2985 5.476599 TCAATGAAAACCCTAATGTCACCTG 59.523 40.000 0.00 0.00 0.00 4.00
2812 2992 6.388619 AACCCTAATGTCACCTGAAGTATT 57.611 37.500 0.00 0.00 0.00 1.89
2977 3157 1.463674 GGAACCCGCAAGTTGATCAT 58.536 50.000 7.16 0.00 0.00 2.45
2997 3177 8.671028 TGATCATCAAAACATACATCAAGTGAG 58.329 33.333 0.00 0.00 0.00 3.51
3138 3319 2.028876 GAGAGTAGAGGGGAGAAGCAC 58.971 57.143 0.00 0.00 0.00 4.40
3144 3325 2.562296 AGAGGGGAGAAGCACCATAAA 58.438 47.619 0.00 0.00 45.20 1.40
3147 3328 4.017130 AGAGGGGAGAAGCACCATAAAATT 60.017 41.667 0.00 0.00 45.20 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.542915 CTCCACCTTCATTGTGCAAGG 59.457 52.381 0.00 0.00 44.36 3.61
4 5 2.233271 ACTCCACCTTCATTGTGCAAG 58.767 47.619 0.00 0.00 32.30 4.01
5 6 2.363306 ACTCCACCTTCATTGTGCAA 57.637 45.000 0.00 0.00 32.30 4.08
7 8 3.437049 GTCTTACTCCACCTTCATTGTGC 59.563 47.826 0.00 0.00 32.30 4.57
8 9 4.003648 GGTCTTACTCCACCTTCATTGTG 58.996 47.826 0.00 0.00 0.00 3.33
9 10 3.009143 GGGTCTTACTCCACCTTCATTGT 59.991 47.826 0.00 0.00 32.69 2.71
10 11 3.610911 GGGTCTTACTCCACCTTCATTG 58.389 50.000 0.00 0.00 32.69 2.82
11 12 2.576648 GGGGTCTTACTCCACCTTCATT 59.423 50.000 0.00 0.00 39.07 2.57
12 13 2.197465 GGGGTCTTACTCCACCTTCAT 58.803 52.381 0.00 0.00 39.07 2.57
13 14 1.151413 AGGGGTCTTACTCCACCTTCA 59.849 52.381 0.00 0.00 42.77 3.02
14 15 1.954035 AGGGGTCTTACTCCACCTTC 58.046 55.000 0.00 0.00 42.77 3.46
15 16 1.985895 CAAGGGGTCTTACTCCACCTT 59.014 52.381 0.00 0.00 42.77 3.50
16 17 1.151413 TCAAGGGGTCTTACTCCACCT 59.849 52.381 0.00 0.00 42.77 4.00
17 18 1.555533 CTCAAGGGGTCTTACTCCACC 59.444 57.143 0.00 0.00 42.77 4.61
18 19 2.258109 ACTCAAGGGGTCTTACTCCAC 58.742 52.381 0.00 0.00 42.77 4.02
19 20 2.715763 ACTCAAGGGGTCTTACTCCA 57.284 50.000 0.00 0.00 42.77 3.86
20 21 4.031611 ACATACTCAAGGGGTCTTACTCC 58.968 47.826 0.00 0.00 39.74 3.85
21 22 6.550108 TCATACATACTCAAGGGGTCTTACTC 59.450 42.308 0.00 0.00 0.00 2.59
22 23 6.441222 TCATACATACTCAAGGGGTCTTACT 58.559 40.000 0.00 0.00 0.00 2.24
23 24 6.726490 TCATACATACTCAAGGGGTCTTAC 57.274 41.667 0.00 0.00 0.00 2.34
24 25 6.844388 ACATCATACATACTCAAGGGGTCTTA 59.156 38.462 0.00 0.00 0.00 2.10
25 26 5.667626 ACATCATACATACTCAAGGGGTCTT 59.332 40.000 0.00 0.00 0.00 3.01
26 27 5.219739 ACATCATACATACTCAAGGGGTCT 58.780 41.667 0.00 0.00 0.00 3.85
27 28 5.552870 ACATCATACATACTCAAGGGGTC 57.447 43.478 0.00 0.00 0.00 4.46
28 29 5.975988 AACATCATACATACTCAAGGGGT 57.024 39.130 0.00 0.00 0.00 4.95
29 30 6.467677 CCTAACATCATACATACTCAAGGGG 58.532 44.000 0.00 0.00 0.00 4.79
30 31 6.467677 CCCTAACATCATACATACTCAAGGG 58.532 44.000 0.00 0.00 33.34 3.95
31 32 5.934625 GCCCTAACATCATACATACTCAAGG 59.065 44.000 0.00 0.00 0.00 3.61
32 33 5.934625 GGCCCTAACATCATACATACTCAAG 59.065 44.000 0.00 0.00 0.00 3.02
33 34 5.221843 GGGCCCTAACATCATACATACTCAA 60.222 44.000 17.04 0.00 0.00 3.02
34 35 4.286032 GGGCCCTAACATCATACATACTCA 59.714 45.833 17.04 0.00 0.00 3.41
35 36 4.532521 AGGGCCCTAACATCATACATACTC 59.467 45.833 27.42 0.00 0.00 2.59
36 37 4.503398 AGGGCCCTAACATCATACATACT 58.497 43.478 27.42 0.00 0.00 2.12
37 38 4.910458 AGGGCCCTAACATCATACATAC 57.090 45.455 27.42 0.00 0.00 2.39
38 39 7.582909 ATTTAGGGCCCTAACATCATACATA 57.417 36.000 38.86 22.82 38.14 2.29
39 40 5.922960 TTTAGGGCCCTAACATCATACAT 57.077 39.130 38.86 10.22 38.14 2.29
40 41 5.922960 ATTTAGGGCCCTAACATCATACA 57.077 39.130 38.86 24.19 38.14 2.29
41 42 7.253905 TCTATTTAGGGCCCTAACATCATAC 57.746 40.000 38.86 0.92 38.14 2.39
42 43 8.463055 AATCTATTTAGGGCCCTAACATCATA 57.537 34.615 38.86 29.98 38.14 2.15
43 44 6.977244 ATCTATTTAGGGCCCTAACATCAT 57.023 37.500 38.86 30.43 38.14 2.45
44 45 6.780198 AATCTATTTAGGGCCCTAACATCA 57.220 37.500 38.86 26.64 38.14 3.07
45 46 7.004691 ACAAATCTATTTAGGGCCCTAACATC 58.995 38.462 38.86 4.02 38.14 3.06
46 47 6.922540 ACAAATCTATTTAGGGCCCTAACAT 58.077 36.000 38.86 32.12 38.14 2.71
47 48 6.335781 ACAAATCTATTTAGGGCCCTAACA 57.664 37.500 38.86 28.98 38.14 2.41
48 49 6.713903 GGTACAAATCTATTTAGGGCCCTAAC 59.286 42.308 38.86 24.50 38.14 2.34
49 50 6.622348 AGGTACAAATCTATTTAGGGCCCTAA 59.378 38.462 36.11 36.11 36.81 2.69
50 51 6.155367 AGGTACAAATCTATTTAGGGCCCTA 58.845 40.000 28.66 28.66 0.00 3.53
51 52 4.982302 AGGTACAAATCTATTTAGGGCCCT 59.018 41.667 31.35 31.35 0.00 5.19
52 53 5.320488 AGGTACAAATCTATTTAGGGCCC 57.680 43.478 16.46 16.46 0.00 5.80
53 54 6.044054 ACCTAGGTACAAATCTATTTAGGGCC 59.956 42.308 14.41 0.00 0.00 5.80
54 55 7.075851 ACCTAGGTACAAATCTATTTAGGGC 57.924 40.000 14.41 0.00 0.00 5.19
55 56 8.711170 TGAACCTAGGTACAAATCTATTTAGGG 58.289 37.037 16.67 0.00 0.00 3.53
56 57 9.765795 CTGAACCTAGGTACAAATCTATTTAGG 57.234 37.037 16.67 0.00 0.00 2.69
59 60 9.668497 GAACTGAACCTAGGTACAAATCTATTT 57.332 33.333 16.67 3.58 0.00 1.40
60 61 9.047947 AGAACTGAACCTAGGTACAAATCTATT 57.952 33.333 16.67 7.14 0.00 1.73
61 62 8.611051 AGAACTGAACCTAGGTACAAATCTAT 57.389 34.615 16.67 0.00 0.00 1.98
62 63 7.123847 GGAGAACTGAACCTAGGTACAAATCTA 59.876 40.741 16.67 0.00 0.00 1.98
63 64 6.070710 GGAGAACTGAACCTAGGTACAAATCT 60.071 42.308 16.67 15.91 0.00 2.40
64 65 6.070710 AGGAGAACTGAACCTAGGTACAAATC 60.071 42.308 16.67 9.31 31.78 2.17
65 66 5.785940 AGGAGAACTGAACCTAGGTACAAAT 59.214 40.000 16.67 0.00 31.78 2.32
66 67 5.152934 AGGAGAACTGAACCTAGGTACAAA 58.847 41.667 16.67 0.01 31.78 2.83
67 68 4.748701 AGGAGAACTGAACCTAGGTACAA 58.251 43.478 16.67 2.73 31.78 2.41
68 69 4.044317 AGAGGAGAACTGAACCTAGGTACA 59.956 45.833 16.67 0.08 33.89 2.90
69 70 4.602107 AGAGGAGAACTGAACCTAGGTAC 58.398 47.826 16.67 3.19 33.89 3.34
70 71 4.325187 GGAGAGGAGAACTGAACCTAGGTA 60.325 50.000 16.67 0.00 33.89 3.08
71 72 3.564790 GGAGAGGAGAACTGAACCTAGGT 60.565 52.174 9.21 9.21 33.89 3.08
72 73 3.028130 GGAGAGGAGAACTGAACCTAGG 58.972 54.545 7.41 7.41 33.89 3.02
73 74 3.702792 TGGAGAGGAGAACTGAACCTAG 58.297 50.000 0.00 0.00 33.89 3.02
74 75 3.827817 TGGAGAGGAGAACTGAACCTA 57.172 47.619 0.00 0.00 33.89 3.08
75 76 2.704190 TGGAGAGGAGAACTGAACCT 57.296 50.000 0.00 0.00 36.68 3.50
76 77 3.261897 TGAATGGAGAGGAGAACTGAACC 59.738 47.826 0.00 0.00 0.00 3.62
77 78 4.543590 TGAATGGAGAGGAGAACTGAAC 57.456 45.455 0.00 0.00 0.00 3.18
78 79 4.779489 TCATGAATGGAGAGGAGAACTGAA 59.221 41.667 0.00 0.00 0.00 3.02
79 80 4.356436 TCATGAATGGAGAGGAGAACTGA 58.644 43.478 0.00 0.00 0.00 3.41
80 81 4.750021 TCATGAATGGAGAGGAGAACTG 57.250 45.455 0.00 0.00 0.00 3.16
81 82 6.786461 TGATATCATGAATGGAGAGGAGAACT 59.214 38.462 0.00 0.00 0.00 3.01
82 83 7.002250 TGATATCATGAATGGAGAGGAGAAC 57.998 40.000 0.00 0.00 0.00 3.01
83 84 6.786461 ACTGATATCATGAATGGAGAGGAGAA 59.214 38.462 5.72 0.00 0.00 2.87
84 85 6.210984 CACTGATATCATGAATGGAGAGGAGA 59.789 42.308 5.72 0.00 0.00 3.71
85 86 6.210984 TCACTGATATCATGAATGGAGAGGAG 59.789 42.308 5.72 0.00 0.00 3.69
86 87 6.080009 TCACTGATATCATGAATGGAGAGGA 58.920 40.000 5.72 0.00 0.00 3.71
87 88 6.356186 TCACTGATATCATGAATGGAGAGG 57.644 41.667 5.72 0.00 0.00 3.69
88 89 8.722394 CAAATCACTGATATCATGAATGGAGAG 58.278 37.037 16.59 2.14 0.00 3.20
89 90 8.215736 ACAAATCACTGATATCATGAATGGAGA 58.784 33.333 21.51 11.32 0.00 3.71
90 91 8.392372 ACAAATCACTGATATCATGAATGGAG 57.608 34.615 21.51 0.00 0.00 3.86
91 92 8.756486 AACAAATCACTGATATCATGAATGGA 57.244 30.769 21.51 11.31 0.00 3.41
92 93 8.080417 GGAACAAATCACTGATATCATGAATGG 58.920 37.037 21.51 15.06 0.00 3.16
93 94 8.847196 AGGAACAAATCACTGATATCATGAATG 58.153 33.333 16.59 18.03 0.00 2.67
94 95 8.847196 CAGGAACAAATCACTGATATCATGAAT 58.153 33.333 16.59 9.50 31.64 2.57
95 96 7.283807 CCAGGAACAAATCACTGATATCATGAA 59.716 37.037 16.59 3.64 31.64 2.57
96 97 6.769341 CCAGGAACAAATCACTGATATCATGA 59.231 38.462 5.72 12.09 31.64 3.07
97 98 6.544931 ACCAGGAACAAATCACTGATATCATG 59.455 38.462 5.72 7.26 31.64 3.07
98 99 6.666678 ACCAGGAACAAATCACTGATATCAT 58.333 36.000 5.72 0.00 31.64 2.45
99 100 6.065976 ACCAGGAACAAATCACTGATATCA 57.934 37.500 5.07 5.07 31.64 2.15
100 101 6.825721 AGAACCAGGAACAAATCACTGATATC 59.174 38.462 0.00 0.00 31.64 1.63
101 102 6.725364 AGAACCAGGAACAAATCACTGATAT 58.275 36.000 0.00 0.00 31.64 1.63
102 103 6.126863 AGAACCAGGAACAAATCACTGATA 57.873 37.500 0.00 0.00 31.64 2.15
103 104 4.990526 AGAACCAGGAACAAATCACTGAT 58.009 39.130 0.00 0.00 31.64 2.90
104 105 4.437682 AGAACCAGGAACAAATCACTGA 57.562 40.909 0.00 0.00 31.64 3.41
105 106 5.551233 TCTAGAACCAGGAACAAATCACTG 58.449 41.667 0.00 0.00 0.00 3.66
106 107 5.544176 TCTCTAGAACCAGGAACAAATCACT 59.456 40.000 0.00 0.00 0.00 3.41
107 108 5.794894 TCTCTAGAACCAGGAACAAATCAC 58.205 41.667 0.00 0.00 0.00 3.06
129 130 7.988028 ACCTAGCTAAAATTCCTAGTGATGTTC 59.012 37.037 0.00 0.00 0.00 3.18
138 139 9.774413 GTGCTTTATACCTAGCTAAAATTCCTA 57.226 33.333 0.00 0.00 38.22 2.94
158 159 7.715657 TCTAAATGTCATGTTTCTTGTGCTTT 58.284 30.769 0.00 0.00 0.00 3.51
175 176 8.939929 CGGATAATTGCTCACATATCTAAATGT 58.060 33.333 0.00 0.00 40.75 2.71
303 304 7.236007 ATGTTGAGAAAACAAAGCCATCGCT 62.236 40.000 0.00 0.00 38.37 4.93
305 306 3.963665 TGTTGAGAAAACAAAGCCATCG 58.036 40.909 0.00 0.00 0.00 3.84
343 354 7.951347 AGACCGTCTAAGAAGTTAAATAGGA 57.049 36.000 0.00 0.00 0.00 2.94
394 406 2.758089 GCCTGCAGCCTGAACGATG 61.758 63.158 8.66 0.00 34.35 3.84
395 407 2.437359 GCCTGCAGCCTGAACGAT 60.437 61.111 8.66 0.00 34.35 3.73
398 410 2.833604 ATCCTGCCTGCAGCCTGAAC 62.834 60.000 13.63 0.00 42.35 3.18
420 432 6.325919 TGTAAATTGAAGTCATGGTGTTCC 57.674 37.500 0.00 0.00 0.00 3.62
421 433 6.206634 TCCTGTAAATTGAAGTCATGGTGTTC 59.793 38.462 0.00 0.00 0.00 3.18
423 435 5.630121 TCCTGTAAATTGAAGTCATGGTGT 58.370 37.500 0.00 0.00 0.00 4.16
424 436 6.600822 AGATCCTGTAAATTGAAGTCATGGTG 59.399 38.462 0.00 0.00 0.00 4.17
425 437 6.600822 CAGATCCTGTAAATTGAAGTCATGGT 59.399 38.462 0.00 0.00 0.00 3.55
426 438 6.825213 TCAGATCCTGTAAATTGAAGTCATGG 59.175 38.462 0.00 0.00 32.61 3.66
427 439 7.854557 TCAGATCCTGTAAATTGAAGTCATG 57.145 36.000 0.00 0.00 32.61 3.07
428 440 8.868522 TTTCAGATCCTGTAAATTGAAGTCAT 57.131 30.769 0.00 0.00 32.61 3.06
429 441 8.868522 ATTTCAGATCCTGTAAATTGAAGTCA 57.131 30.769 0.00 0.00 32.61 3.41
431 443 8.897752 GCTATTTCAGATCCTGTAAATTGAAGT 58.102 33.333 0.00 0.00 32.61 3.01
459 471 0.843309 TGTGGGAAGAAAGCTGACCA 59.157 50.000 0.00 0.00 0.00 4.02
463 475 5.128205 TGATATGATGTGGGAAGAAAGCTG 58.872 41.667 0.00 0.00 0.00 4.24
519 532 6.897259 TTGCCGTTTACTACTATGATGAAC 57.103 37.500 0.00 0.00 0.00 3.18
537 550 2.995466 TGAGCATTTCTCTTTTGCCG 57.005 45.000 0.00 0.00 42.38 5.69
553 566 4.655762 TTTAGATGGACCGAGACATGAG 57.344 45.455 0.00 0.00 0.00 2.90
566 579 7.565680 AGTAGTGGTACCTGAAATTTAGATGG 58.434 38.462 14.36 0.00 0.00 3.51
570 583 9.886132 AACATAGTAGTGGTACCTGAAATTTAG 57.114 33.333 14.36 0.00 0.00 1.85
635 655 9.173939 CATCCATTATTAAAGCACGAAGATTTC 57.826 33.333 0.00 0.00 0.00 2.17
686 706 8.647143 AGAACCGCAAATAATAATTCCAAATG 57.353 30.769 0.00 0.00 0.00 2.32
706 726 8.611654 TTTAGTAATGTCCTTGTGTAAGAACC 57.388 34.615 0.00 0.00 35.92 3.62
707 727 8.718734 CCTTTAGTAATGTCCTTGTGTAAGAAC 58.281 37.037 0.00 0.00 35.92 3.01
802 822 7.648142 ACTTGCGATCTGAAACTTTTCAATTA 58.352 30.769 5.92 0.00 45.61 1.40
890 911 4.695455 TCCTTAGCGATCTGGAAACTTTTG 59.305 41.667 0.00 0.00 0.00 2.44
942 964 2.811317 GCCAGCGAGGTCGAACAG 60.811 66.667 1.87 0.00 43.02 3.16
943 965 3.611674 TGCCAGCGAGGTCGAACA 61.612 61.111 1.87 0.00 43.02 3.18
944 966 3.112709 GTGCCAGCGAGGTCGAAC 61.113 66.667 2.94 0.00 43.02 3.95
964 987 2.412605 GCAGCAAGCCCATCTAAGG 58.587 57.895 0.00 0.00 37.23 2.69
982 1005 9.499479 AATCTGCATATGACCAGACTAAAATAG 57.501 33.333 13.31 0.00 40.55 1.73
1001 1026 5.963176 TGCTTGAAGATAACAAATCTGCA 57.037 34.783 0.00 0.00 32.07 4.41
1022 1047 3.568538 GTGTGGCTCACATTTAGCTTTG 58.431 45.455 14.37 0.00 46.32 2.77
1045 1070 4.764823 ACAGGACAACAACAAAGTTCTCAA 59.235 37.500 0.00 0.00 0.00 3.02
1046 1071 4.155826 CACAGGACAACAACAAAGTTCTCA 59.844 41.667 0.00 0.00 0.00 3.27
1047 1072 4.438744 CCACAGGACAACAACAAAGTTCTC 60.439 45.833 0.00 0.00 0.00 2.87
1048 1073 3.443681 CCACAGGACAACAACAAAGTTCT 59.556 43.478 0.00 0.00 0.00 3.01
1049 1074 3.442273 TCCACAGGACAACAACAAAGTTC 59.558 43.478 0.00 0.00 0.00 3.01
1050 1075 3.426615 TCCACAGGACAACAACAAAGTT 58.573 40.909 0.00 0.00 0.00 2.66
1051 1076 3.080300 TCCACAGGACAACAACAAAGT 57.920 42.857 0.00 0.00 0.00 2.66
1052 1077 4.654091 AATCCACAGGACAACAACAAAG 57.346 40.909 0.00 0.00 32.98 2.77
1053 1078 5.419155 TGTTAATCCACAGGACAACAACAAA 59.581 36.000 10.82 0.00 37.18 2.83
1054 1079 4.950475 TGTTAATCCACAGGACAACAACAA 59.050 37.500 10.82 0.00 37.18 2.83
1055 1080 4.527944 TGTTAATCCACAGGACAACAACA 58.472 39.130 10.82 6.21 37.18 3.33
1056 1081 5.508200 TTGTTAATCCACAGGACAACAAC 57.492 39.130 17.25 8.07 41.17 3.32
1057 1082 6.016360 CAGATTGTTAATCCACAGGACAACAA 60.016 38.462 20.77 20.77 45.45 2.83
1058 1083 5.473162 CAGATTGTTAATCCACAGGACAACA 59.527 40.000 9.69 9.69 37.85 3.33
1059 1084 5.619981 GCAGATTGTTAATCCACAGGACAAC 60.620 44.000 0.00 5.75 38.71 3.32
1060 1085 4.458989 GCAGATTGTTAATCCACAGGACAA 59.541 41.667 0.00 0.00 38.71 3.18
1061 1086 4.009675 GCAGATTGTTAATCCACAGGACA 58.990 43.478 0.00 0.00 38.71 4.02
1062 1087 3.378427 GGCAGATTGTTAATCCACAGGAC 59.622 47.826 0.00 0.00 38.71 3.85
1063 1088 3.010027 TGGCAGATTGTTAATCCACAGGA 59.990 43.478 0.00 0.00 38.71 3.86
1064 1089 3.129287 GTGGCAGATTGTTAATCCACAGG 59.871 47.826 4.52 0.00 38.71 4.00
1065 1090 3.181507 CGTGGCAGATTGTTAATCCACAG 60.182 47.826 9.48 0.00 38.71 3.66
1066 1091 2.746904 CGTGGCAGATTGTTAATCCACA 59.253 45.455 9.48 1.27 38.71 4.17
1067 1092 3.006940 TCGTGGCAGATTGTTAATCCAC 58.993 45.455 0.00 0.00 38.71 4.02
1068 1093 3.342377 TCGTGGCAGATTGTTAATCCA 57.658 42.857 0.00 0.00 38.71 3.41
1069 1094 3.548818 GCATCGTGGCAGATTGTTAATCC 60.549 47.826 0.00 0.00 38.71 3.01
1070 1095 3.313526 AGCATCGTGGCAGATTGTTAATC 59.686 43.478 0.00 0.00 38.20 1.75
1071 1096 3.282021 AGCATCGTGGCAGATTGTTAAT 58.718 40.909 0.00 0.00 35.83 1.40
1072 1097 2.710377 AGCATCGTGGCAGATTGTTAA 58.290 42.857 0.00 0.00 35.83 2.01
1073 1098 2.401583 AGCATCGTGGCAGATTGTTA 57.598 45.000 0.00 0.00 35.83 2.41
1074 1099 2.401583 TAGCATCGTGGCAGATTGTT 57.598 45.000 0.00 0.00 35.83 2.83
1075 1100 2.009774 GTTAGCATCGTGGCAGATTGT 58.990 47.619 0.00 0.00 35.83 2.71
1076 1101 2.009051 TGTTAGCATCGTGGCAGATTG 58.991 47.619 0.00 0.00 35.83 2.67
1077 1102 2.009774 GTGTTAGCATCGTGGCAGATT 58.990 47.619 0.00 0.00 35.83 2.40
1078 1103 1.208052 AGTGTTAGCATCGTGGCAGAT 59.792 47.619 0.00 0.00 35.83 2.90
1079 1104 0.608130 AGTGTTAGCATCGTGGCAGA 59.392 50.000 0.00 0.00 35.83 4.26
1080 1105 2.293677 TAGTGTTAGCATCGTGGCAG 57.706 50.000 0.00 0.00 35.83 4.85
1081 1106 2.753055 TTAGTGTTAGCATCGTGGCA 57.247 45.000 4.08 0.00 35.83 4.92
1082 1107 4.616181 AATTTAGTGTTAGCATCGTGGC 57.384 40.909 0.00 0.00 0.00 5.01
1100 1125 9.181805 CACTCTGTTCGTCGTATGATTATAATT 57.818 33.333 0.00 0.00 0.00 1.40
1104 1129 6.373186 TCACTCTGTTCGTCGTATGATTAT 57.627 37.500 0.00 0.00 0.00 1.28
1106 1131 4.696899 TCACTCTGTTCGTCGTATGATT 57.303 40.909 0.00 0.00 0.00 2.57
1116 1141 3.768406 CTCATCCTCTTCACTCTGTTCG 58.232 50.000 0.00 0.00 0.00 3.95
1132 1157 6.514947 GGATGATATACTCTGGATGCTCATC 58.485 44.000 1.35 1.35 37.89 2.92
1140 1165 2.092323 CCGCGGATGATATACTCTGGA 58.908 52.381 24.07 0.00 0.00 3.86
1149 1174 0.747852 TGTGCTTACCGCGGATGATA 59.252 50.000 35.90 11.26 43.27 2.15
1201 1230 6.030548 TGGATTATGATGCTACTAGTCTGC 57.969 41.667 0.00 6.23 0.00 4.26
1204 1233 6.030548 TGCTGGATTATGATGCTACTAGTC 57.969 41.667 0.00 0.00 0.00 2.59
1208 1237 4.008330 GCATGCTGGATTATGATGCTACT 58.992 43.478 11.37 0.00 37.13 2.57
1209 1238 3.754850 TGCATGCTGGATTATGATGCTAC 59.245 43.478 20.33 0.00 40.11 3.58
1210 1239 4.023726 TGCATGCTGGATTATGATGCTA 57.976 40.909 20.33 0.00 40.11 3.49
1213 1242 4.675408 GCAGATGCATGCTGGATTATGATG 60.675 45.833 20.33 5.27 43.07 3.07
1225 1254 3.344904 AAGAAATACGCAGATGCATGC 57.655 42.857 11.82 11.82 42.21 4.06
1230 1259 6.893958 AGTAGACAAAGAAATACGCAGATG 57.106 37.500 0.00 0.00 0.00 2.90
1234 1263 6.276832 AGGTAGTAGACAAAGAAATACGCA 57.723 37.500 0.00 0.00 0.00 5.24
1235 1264 6.810182 TGAAGGTAGTAGACAAAGAAATACGC 59.190 38.462 0.00 0.00 0.00 4.42
1236 1265 7.009357 GCTGAAGGTAGTAGACAAAGAAATACG 59.991 40.741 0.00 0.00 0.00 3.06
1247 1276 6.702716 AGTGAATAGCTGAAGGTAGTAGAC 57.297 41.667 0.00 0.00 0.00 2.59
1250 1279 6.118170 ACGTAGTGAATAGCTGAAGGTAGTA 58.882 40.000 0.00 0.00 42.51 1.82
1306 1335 4.472833 AGACAGGGATGCTTAGAACAATCT 59.527 41.667 0.00 0.00 39.82 2.40
1312 1341 3.173151 TGTGAGACAGGGATGCTTAGAA 58.827 45.455 0.00 0.00 0.00 2.10
1316 1345 2.107204 AGTTTGTGAGACAGGGATGCTT 59.893 45.455 0.00 0.00 0.00 3.91
1322 1351 2.023673 TGCAAAGTTTGTGAGACAGGG 58.976 47.619 16.70 0.00 0.00 4.45
1324 1353 4.736793 GTGATTGCAAAGTTTGTGAGACAG 59.263 41.667 16.70 0.00 0.00 3.51
1326 1355 4.500477 GTGTGATTGCAAAGTTTGTGAGAC 59.500 41.667 16.70 8.27 0.00 3.36
1345 1374 3.932545 AGAGTAGAACAGAGCAGTGTG 57.067 47.619 0.00 0.00 0.00 3.82
1364 1393 9.454859 AAAGGATACAAAGATTGACTAAGGAAG 57.545 33.333 0.00 0.00 41.41 3.46
1372 1401 8.999431 TCAGTACAAAAGGATACAAAGATTGAC 58.001 33.333 0.00 0.00 41.41 3.18
1384 1413 7.665559 TGCTGAAAGTAATCAGTACAAAAGGAT 59.334 33.333 6.22 0.00 46.85 3.24
1462 1493 7.022055 TCGTAAAATTGAGAAAGCAGAAACA 57.978 32.000 0.00 0.00 0.00 2.83
1463 1494 7.096599 GGTTCGTAAAATTGAGAAAGCAGAAAC 60.097 37.037 0.00 0.00 0.00 2.78
1467 1498 5.757886 TGGTTCGTAAAATTGAGAAAGCAG 58.242 37.500 0.00 0.00 0.00 4.24
1470 1501 9.243637 TCAAATTGGTTCGTAAAATTGAGAAAG 57.756 29.630 0.00 0.00 0.00 2.62
1485 1516 5.126061 ACATAGCAGATGGTCAAATTGGTTC 59.874 40.000 3.92 0.00 0.00 3.62
1491 1522 8.462016 GTTCTAAAACATAGCAGATGGTCAAAT 58.538 33.333 3.92 0.00 35.36 2.32
1495 1526 7.334421 TGAAGTTCTAAAACATAGCAGATGGTC 59.666 37.037 4.17 0.00 37.88 4.02
1551 1582 5.303971 AGGCATGAAGTCATATAAGTGAGC 58.696 41.667 0.00 0.00 34.26 4.26
1554 1585 6.148480 GGCTTAGGCATGAAGTCATATAAGTG 59.852 42.308 0.00 0.10 40.87 3.16
1582 1613 6.720112 TTCAGTTATATAACACCGTAGGCT 57.280 37.500 24.05 0.00 42.49 4.58
1638 1686 1.915141 AGGTAGCATTTGCAACAGCT 58.085 45.000 23.45 23.45 45.16 4.24
1656 1704 6.467677 TGAATGAAGGTGAGAAGGAAGTTAG 58.532 40.000 0.00 0.00 0.00 2.34
1663 1713 4.645535 TGAGTTGAATGAAGGTGAGAAGG 58.354 43.478 0.00 0.00 0.00 3.46
1674 1724 4.761739 GTGTTCCTGGATTGAGTTGAATGA 59.238 41.667 0.00 0.00 0.00 2.57
1679 1729 3.146104 AGGTGTTCCTGGATTGAGTTG 57.854 47.619 0.00 0.00 43.33 3.16
1703 1753 0.252421 TCTCCACAGTGCTGGATCCT 60.252 55.000 14.23 0.00 39.72 3.24
1712 1762 2.756840 TCATCAAGCTCTCCACAGTG 57.243 50.000 0.00 0.00 0.00 3.66
1716 1766 3.196463 CAGTGATCATCAAGCTCTCCAC 58.804 50.000 0.00 0.00 0.00 4.02
1729 1779 4.780554 TCATTACCCCAGTAACAGTGATCA 59.219 41.667 0.00 0.00 41.19 2.92
1771 1821 1.446272 AAAGAGAGCGCCTACGTGC 60.446 57.895 2.29 0.00 46.29 5.34
1779 1829 2.275318 AGAACATAGCAAAGAGAGCGC 58.725 47.619 0.00 0.00 37.01 5.92
1800 1850 2.768503 GATGCCTGGCTTTTTGCGCA 62.769 55.000 21.03 5.66 44.05 6.09
1803 1853 1.150827 GTTGATGCCTGGCTTTTTGC 58.849 50.000 21.03 2.20 41.94 3.68
1815 1865 3.684305 TGTGCACACATAGTAGTTGATGC 59.316 43.478 17.42 0.00 36.21 3.91
1828 1878 7.628235 CAAATGTTTTATTGATTGTGCACACA 58.372 30.769 21.56 12.95 39.98 3.72
1913 2081 8.443953 AAAGCCAGTGAATTTCATATAGAGTC 57.556 34.615 1.78 0.00 0.00 3.36
1923 2091 6.765915 ATTAGGAGAAAGCCAGTGAATTTC 57.234 37.500 10.41 10.41 33.97 2.17
1924 2092 7.406104 ACTATTAGGAGAAAGCCAGTGAATTT 58.594 34.615 0.00 0.00 0.00 1.82
1927 2099 7.676683 ATACTATTAGGAGAAAGCCAGTGAA 57.323 36.000 0.00 0.00 0.00 3.18
1933 2107 9.343539 ACATGAAAATACTATTAGGAGAAAGCC 57.656 33.333 0.00 0.00 0.00 4.35
1957 2131 6.571731 GCAGGTTCTGTTCAGTATAGTGTACA 60.572 42.308 16.40 16.40 33.43 2.90
1973 2149 3.005554 CAATGTAGTCCAGCAGGTTCTG 58.994 50.000 0.00 0.00 35.89 3.02
2036 2212 0.671472 CGACATCTGGCAAGCAGACA 60.671 55.000 0.00 0.00 0.00 3.41
2059 2236 4.629200 GTCCTCTTGTCAGTTTCTAGCATG 59.371 45.833 0.00 0.00 0.00 4.06
2067 2244 3.644966 TGGTTGTCCTCTTGTCAGTTT 57.355 42.857 0.00 0.00 34.23 2.66
2081 2258 1.271163 CCAGACGGTGGTTATGGTTGT 60.271 52.381 0.00 0.00 42.17 3.32
2096 2273 0.728466 CGACGAAACTCGGACCAGAC 60.728 60.000 0.67 0.00 45.59 3.51
2097 2274 1.577922 CGACGAAACTCGGACCAGA 59.422 57.895 0.67 0.00 45.59 3.86
2140 2317 3.505680 AGGATCAAATAGCAACGCAAACA 59.494 39.130 0.00 0.00 0.00 2.83
2141 2318 4.096732 AGGATCAAATAGCAACGCAAAC 57.903 40.909 0.00 0.00 0.00 2.93
2142 2319 4.782019 AAGGATCAAATAGCAACGCAAA 57.218 36.364 0.00 0.00 0.00 3.68
2144 2321 4.217334 TCAAAAGGATCAAATAGCAACGCA 59.783 37.500 0.00 0.00 0.00 5.24
2145 2322 4.732784 TCAAAAGGATCAAATAGCAACGC 58.267 39.130 0.00 0.00 0.00 4.84
2146 2323 5.335127 CCTCAAAAGGATCAAATAGCAACG 58.665 41.667 0.00 0.00 46.67 4.10
2147 2324 5.185828 ACCCTCAAAAGGATCAAATAGCAAC 59.814 40.000 0.00 0.00 46.67 4.17
2148 2325 5.332743 ACCCTCAAAAGGATCAAATAGCAA 58.667 37.500 0.00 0.00 46.67 3.91
2149 2326 4.934356 ACCCTCAAAAGGATCAAATAGCA 58.066 39.130 0.00 0.00 46.67 3.49
2150 2327 6.772716 TCATACCCTCAAAAGGATCAAATAGC 59.227 38.462 0.00 0.00 46.67 2.97
2151 2328 8.790718 CATCATACCCTCAAAAGGATCAAATAG 58.209 37.037 0.00 0.00 46.67 1.73
2152 2329 8.281531 ACATCATACCCTCAAAAGGATCAAATA 58.718 33.333 0.00 0.00 46.67 1.40
2153 2330 7.128077 ACATCATACCCTCAAAAGGATCAAAT 58.872 34.615 0.00 0.00 46.67 2.32
2154 2331 6.493166 ACATCATACCCTCAAAAGGATCAAA 58.507 36.000 0.00 0.00 46.67 2.69
2155 2332 6.069440 AGACATCATACCCTCAAAAGGATCAA 60.069 38.462 0.00 0.00 46.67 2.57
2156 2333 5.429762 AGACATCATACCCTCAAAAGGATCA 59.570 40.000 0.00 0.00 46.67 2.92
2157 2334 5.934781 AGACATCATACCCTCAAAAGGATC 58.065 41.667 0.00 0.00 46.67 3.36
2158 2335 5.983333 AGACATCATACCCTCAAAAGGAT 57.017 39.130 0.00 0.00 46.67 3.24
2159 2336 5.964477 AGTAGACATCATACCCTCAAAAGGA 59.036 40.000 0.00 0.00 46.67 3.36
2160 2337 6.240549 AGTAGACATCATACCCTCAAAAGG 57.759 41.667 0.00 0.00 42.95 3.11
2161 2338 6.918569 CGTAGTAGACATCATACCCTCAAAAG 59.081 42.308 0.00 0.00 0.00 2.27
2162 2339 6.682113 GCGTAGTAGACATCATACCCTCAAAA 60.682 42.308 0.00 0.00 0.00 2.44
2163 2340 5.221185 GCGTAGTAGACATCATACCCTCAAA 60.221 44.000 0.00 0.00 0.00 2.69
2164 2341 4.277672 GCGTAGTAGACATCATACCCTCAA 59.722 45.833 0.00 0.00 0.00 3.02
2165 2342 3.819337 GCGTAGTAGACATCATACCCTCA 59.181 47.826 0.00 0.00 0.00 3.86
2166 2343 3.819337 TGCGTAGTAGACATCATACCCTC 59.181 47.826 0.00 0.00 0.00 4.30
2167 2344 3.828921 TGCGTAGTAGACATCATACCCT 58.171 45.455 0.00 0.00 0.00 4.34
2168 2345 4.296690 GTTGCGTAGTAGACATCATACCC 58.703 47.826 0.00 0.00 0.00 3.69
2169 2346 4.037684 AGGTTGCGTAGTAGACATCATACC 59.962 45.833 0.00 0.00 0.00 2.73
2170 2347 5.184340 AGGTTGCGTAGTAGACATCATAC 57.816 43.478 0.00 0.00 0.00 2.39
2171 2348 5.593095 AGAAGGTTGCGTAGTAGACATCATA 59.407 40.000 0.00 0.00 0.00 2.15
2172 2349 4.402793 AGAAGGTTGCGTAGTAGACATCAT 59.597 41.667 0.00 0.00 0.00 2.45
2197 2374 3.572255 GGAAGCCCAACAACATCTACAAA 59.428 43.478 0.00 0.00 0.00 2.83
2205 2382 1.110442 CACTTGGAAGCCCAACAACA 58.890 50.000 0.00 0.00 46.94 3.33
2253 2430 3.107601 CCTTAGGTCATCCACTTGAGGA 58.892 50.000 0.00 0.00 43.01 3.71
2280 2457 1.436336 CTACGCCTCCGACGGATTT 59.564 57.895 18.71 4.53 38.29 2.17
2288 2465 0.962489 ATCTTCATCCTACGCCTCCG 59.038 55.000 0.00 0.00 41.14 4.63
2402 2582 5.121811 GCACTTGTATCACCATCTCTTCAT 58.878 41.667 0.00 0.00 0.00 2.57
2403 2583 4.020307 TGCACTTGTATCACCATCTCTTCA 60.020 41.667 0.00 0.00 0.00 3.02
2541 2721 9.587772 GAGAGAACTTGCACTAGTGAAATTATA 57.412 33.333 27.08 0.00 0.00 0.98
2545 2725 5.858381 TGAGAGAACTTGCACTAGTGAAAT 58.142 37.500 27.08 8.30 0.00 2.17
2617 2797 7.148052 GCTATTAGTGACTTTGGAGTGACTCTA 60.148 40.741 12.92 3.01 45.55 2.43
2700 2880 1.271871 ACAGCCCAACGGATTGATTGA 60.272 47.619 0.00 0.00 38.15 2.57
2719 2899 6.293790 GGGTTGTTTGTGACACTTATAGGAAC 60.294 42.308 7.20 1.44 38.18 3.62
2785 2965 4.715534 TCAGGTGACATTAGGGTTTTCA 57.284 40.909 0.00 0.00 0.00 2.69
2786 2966 5.070685 ACTTCAGGTGACATTAGGGTTTTC 58.929 41.667 0.00 0.00 0.00 2.29
2829 3009 5.920903 TCTGAGATTGTGTGATGCATATCA 58.079 37.500 0.00 0.00 40.92 2.15
2889 3069 0.963856 CCGGTAGAAACTTTGGGGCC 60.964 60.000 0.00 0.00 0.00 5.80
2977 3157 6.073819 CGTGACTCACTTGATGTATGTTTTGA 60.074 38.462 7.58 0.00 31.34 2.69
2997 3177 3.555956 GTGACAATGGGATATCACGTGAC 59.444 47.826 22.71 8.37 32.79 3.67
3078 3258 9.807921 AGTTTTCCCTTTGAAGTAATCTTATCA 57.192 29.630 0.00 0.00 33.63 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.