Multiple sequence alignment - TraesCS2D01G420100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G420100 chr2D 100.000 2737 0 0 1 2737 534128274 534131010 0.000000e+00 5055.0
1 TraesCS2D01G420100 chr2D 87.706 1033 73 26 1056 2056 534122862 534123872 0.000000e+00 1155.0
2 TraesCS2D01G420100 chr2D 87.054 896 44 23 1095 1972 633297763 633298604 0.000000e+00 946.0
3 TraesCS2D01G420100 chr2D 91.646 407 26 7 1 402 623632165 623631762 8.560000e-155 556.0
4 TraesCS2D01G420100 chr2D 90.887 406 28 7 1 402 603125404 603125004 1.120000e-148 536.0
5 TraesCS2D01G420100 chr5D 87.692 1235 89 26 791 2008 515039980 515038792 0.000000e+00 1380.0
6 TraesCS2D01G420100 chr5D 92.918 706 41 9 965 1666 515094464 515093764 0.000000e+00 1018.0
7 TraesCS2D01G420100 chr5B 87.678 1193 84 25 852 2025 647879718 647878570 0.000000e+00 1330.0
8 TraesCS2D01G420100 chr5B 87.387 333 27 11 413 742 647880406 647880086 4.310000e-98 368.0
9 TraesCS2D01G420100 chr5A 88.011 1126 77 26 816 1921 643312357 643311270 0.000000e+00 1279.0
10 TraesCS2D01G420100 chr5A 83.468 496 50 12 1547 2029 643310498 643310022 1.510000e-117 433.0
11 TraesCS2D01G420100 chr5A 84.555 382 33 8 1547 1921 643311065 643310703 3.350000e-94 355.0
12 TraesCS2D01G420100 chr5A 82.873 362 21 12 452 800 643312786 643312453 1.240000e-73 287.0
13 TraesCS2D01G420100 chr6D 84.232 1205 86 51 791 1971 20475451 20474327 0.000000e+00 1077.0
14 TraesCS2D01G420100 chr2B 85.977 1034 98 27 967 1972 776645938 776644924 0.000000e+00 1062.0
15 TraesCS2D01G420100 chr2B 86.698 639 38 13 2129 2737 634645004 634645625 0.000000e+00 665.0
16 TraesCS2D01G420100 chr2B 87.379 412 40 10 393 802 776646757 776646356 1.920000e-126 462.0
17 TraesCS2D01G420100 chr2B 91.202 341 19 8 462 800 634631383 634631714 1.160000e-123 453.0
18 TraesCS2D01G420100 chr2B 89.688 320 30 2 1770 2086 634644684 634645003 3.280000e-109 405.0
19 TraesCS2D01G420100 chr2B 88.788 330 21 8 850 1169 634631867 634632190 9.190000e-105 390.0
20 TraesCS2D01G420100 chr7B 89.444 701 63 9 965 1662 113445702 113445010 0.000000e+00 874.0
21 TraesCS2D01G420100 chr7A 87.636 736 67 17 988 1715 151328238 151327519 0.000000e+00 833.0
22 TraesCS2D01G420100 chr7D 87.330 734 72 17 988 1715 151542729 151542011 0.000000e+00 821.0
23 TraesCS2D01G420100 chr7D 90.998 411 30 5 1 405 39185772 39185363 5.150000e-152 547.0
24 TraesCS2D01G420100 chr7D 90.931 408 26 10 1 402 575475286 575475688 3.100000e-149 538.0
25 TraesCS2D01G420100 chr3D 91.254 606 42 6 1066 1670 594958432 594957837 0.000000e+00 815.0
26 TraesCS2D01G420100 chr3D 91.084 415 25 11 1 407 194932979 194932569 3.980000e-153 551.0
27 TraesCS2D01G420100 chr3D 91.155 407 24 10 1 402 531561143 531560744 2.400000e-150 542.0
28 TraesCS2D01G420100 chr4D 92.365 406 19 10 3 402 437152697 437152298 3.960000e-158 568.0
29 TraesCS2D01G420100 chr4B 91.379 406 28 6 1 402 302701083 302701485 1.430000e-152 549.0
30 TraesCS2D01G420100 chr3B 91.133 406 28 7 1 402 350909984 350910385 6.670000e-151 544.0
31 TraesCS2D01G420100 chr4A 89.806 206 19 2 1768 1972 639978216 639978420 2.090000e-66 263.0
32 TraesCS2D01G420100 chrUn 100.000 32 0 0 564 595 35178627 35178596 2.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G420100 chr2D 534128274 534131010 2736 False 5055.0 5055 100.00000 1 2737 1 chr2D.!!$F2 2736
1 TraesCS2D01G420100 chr2D 534122862 534123872 1010 False 1155.0 1155 87.70600 1056 2056 1 chr2D.!!$F1 1000
2 TraesCS2D01G420100 chr2D 633297763 633298604 841 False 946.0 946 87.05400 1095 1972 1 chr2D.!!$F3 877
3 TraesCS2D01G420100 chr5D 515038792 515039980 1188 True 1380.0 1380 87.69200 791 2008 1 chr5D.!!$R1 1217
4 TraesCS2D01G420100 chr5D 515093764 515094464 700 True 1018.0 1018 92.91800 965 1666 1 chr5D.!!$R2 701
5 TraesCS2D01G420100 chr5B 647878570 647880406 1836 True 849.0 1330 87.53250 413 2025 2 chr5B.!!$R1 1612
6 TraesCS2D01G420100 chr5A 643310022 643312786 2764 True 588.5 1279 84.72675 452 2029 4 chr5A.!!$R1 1577
7 TraesCS2D01G420100 chr6D 20474327 20475451 1124 True 1077.0 1077 84.23200 791 1971 1 chr6D.!!$R1 1180
8 TraesCS2D01G420100 chr2B 776644924 776646757 1833 True 762.0 1062 86.67800 393 1972 2 chr2B.!!$R1 1579
9 TraesCS2D01G420100 chr2B 634644684 634645625 941 False 535.0 665 88.19300 1770 2737 2 chr2B.!!$F2 967
10 TraesCS2D01G420100 chr2B 634631383 634632190 807 False 421.5 453 89.99500 462 1169 2 chr2B.!!$F1 707
11 TraesCS2D01G420100 chr7B 113445010 113445702 692 True 874.0 874 89.44400 965 1662 1 chr7B.!!$R1 697
12 TraesCS2D01G420100 chr7A 151327519 151328238 719 True 833.0 833 87.63600 988 1715 1 chr7A.!!$R1 727
13 TraesCS2D01G420100 chr7D 151542011 151542729 718 True 821.0 821 87.33000 988 1715 1 chr7D.!!$R2 727
14 TraesCS2D01G420100 chr3D 594957837 594958432 595 True 815.0 815 91.25400 1066 1670 1 chr3D.!!$R3 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.165944 CAAACATGACCCGCGAGAAC 59.834 55.0 8.23 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 4076 0.179015 CCTCCTCTCACTAGGCGCTA 60.179 60.0 7.64 0.0 36.51 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.529780 TGTTCGTTTCTCCGCCTTAA 57.470 45.000 0.00 0.00 0.00 1.85
20 21 2.836262 TGTTCGTTTCTCCGCCTTAAA 58.164 42.857 0.00 0.00 0.00 1.52
21 22 3.204526 TGTTCGTTTCTCCGCCTTAAAA 58.795 40.909 0.00 0.00 0.00 1.52
22 23 3.626670 TGTTCGTTTCTCCGCCTTAAAAA 59.373 39.130 0.00 0.00 0.00 1.94
23 24 4.276431 TGTTCGTTTCTCCGCCTTAAAAAT 59.724 37.500 0.00 0.00 0.00 1.82
24 25 4.413495 TCGTTTCTCCGCCTTAAAAATG 57.587 40.909 0.00 0.00 0.00 2.32
25 26 4.066490 TCGTTTCTCCGCCTTAAAAATGA 58.934 39.130 0.00 0.00 0.00 2.57
26 27 4.698304 TCGTTTCTCCGCCTTAAAAATGAT 59.302 37.500 0.00 0.00 0.00 2.45
27 28 5.028375 CGTTTCTCCGCCTTAAAAATGATC 58.972 41.667 0.00 0.00 0.00 2.92
28 29 5.391523 CGTTTCTCCGCCTTAAAAATGATCA 60.392 40.000 0.00 0.00 0.00 2.92
29 30 6.564328 GTTTCTCCGCCTTAAAAATGATCAT 58.436 36.000 1.18 1.18 0.00 2.45
30 31 5.756195 TCTCCGCCTTAAAAATGATCATG 57.244 39.130 9.46 0.00 0.00 3.07
31 32 4.036734 TCTCCGCCTTAAAAATGATCATGC 59.963 41.667 9.46 5.43 0.00 4.06
32 33 3.953612 TCCGCCTTAAAAATGATCATGCT 59.046 39.130 9.46 0.00 0.00 3.79
33 34 4.402155 TCCGCCTTAAAAATGATCATGCTT 59.598 37.500 9.46 8.24 0.00 3.91
34 35 5.105392 TCCGCCTTAAAAATGATCATGCTTT 60.105 36.000 9.46 13.86 0.00 3.51
35 36 5.232838 CCGCCTTAAAAATGATCATGCTTTC 59.767 40.000 9.46 0.55 0.00 2.62
36 37 5.806502 CGCCTTAAAAATGATCATGCTTTCA 59.193 36.000 9.46 3.53 0.00 2.69
37 38 6.310956 CGCCTTAAAAATGATCATGCTTTCAA 59.689 34.615 9.46 0.00 0.00 2.69
38 39 7.148606 CGCCTTAAAAATGATCATGCTTTCAAA 60.149 33.333 9.46 5.07 0.00 2.69
39 40 8.505625 GCCTTAAAAATGATCATGCTTTCAAAA 58.494 29.630 9.46 3.67 0.00 2.44
43 44 8.441312 AAAAATGATCATGCTTTCAAAAGTGT 57.559 26.923 9.46 0.00 38.28 3.55
44 45 8.441312 AAAATGATCATGCTTTCAAAAGTGTT 57.559 26.923 9.46 0.00 38.28 3.32
45 46 8.441312 AAATGATCATGCTTTCAAAAGTGTTT 57.559 26.923 9.46 0.00 38.28 2.83
46 47 6.831727 TGATCATGCTTTCAAAAGTGTTTG 57.168 33.333 0.00 0.00 44.71 2.93
47 48 6.339730 TGATCATGCTTTCAAAAGTGTTTGT 58.660 32.000 0.00 0.00 43.90 2.83
48 49 6.256104 TGATCATGCTTTCAAAAGTGTTTGTG 59.744 34.615 0.00 0.00 43.90 3.33
49 50 5.718146 TCATGCTTTCAAAAGTGTTTGTGA 58.282 33.333 4.54 0.00 43.90 3.58
50 51 6.162079 TCATGCTTTCAAAAGTGTTTGTGAA 58.838 32.000 4.54 0.00 43.90 3.18
51 52 6.817641 TCATGCTTTCAAAAGTGTTTGTGAAT 59.182 30.769 4.54 0.00 43.90 2.57
52 53 7.333921 TCATGCTTTCAAAAGTGTTTGTGAATT 59.666 29.630 4.54 0.00 43.90 2.17
53 54 7.432350 TGCTTTCAAAAGTGTTTGTGAATTT 57.568 28.000 4.54 0.00 43.90 1.82
54 55 8.539770 TGCTTTCAAAAGTGTTTGTGAATTTA 57.460 26.923 4.54 0.00 43.90 1.40
55 56 8.993121 TGCTTTCAAAAGTGTTTGTGAATTTAA 58.007 25.926 4.54 0.00 43.90 1.52
56 57 9.476761 GCTTTCAAAAGTGTTTGTGAATTTAAG 57.523 29.630 4.54 0.00 43.90 1.85
81 82 9.579932 AGAAATTCTTCCTATCTCAAGTTTTGT 57.420 29.630 0.00 0.00 31.28 2.83
86 87 8.166422 TCTTCCTATCTCAAGTTTTGTTTTCC 57.834 34.615 0.00 0.00 0.00 3.13
87 88 7.998964 TCTTCCTATCTCAAGTTTTGTTTTCCT 59.001 33.333 0.00 0.00 0.00 3.36
88 89 8.533569 TTCCTATCTCAAGTTTTGTTTTCCTT 57.466 30.769 0.00 0.00 0.00 3.36
89 90 8.533569 TCCTATCTCAAGTTTTGTTTTCCTTT 57.466 30.769 0.00 0.00 0.00 3.11
90 91 8.977412 TCCTATCTCAAGTTTTGTTTTCCTTTT 58.023 29.630 0.00 0.00 0.00 2.27
91 92 9.599866 CCTATCTCAAGTTTTGTTTTCCTTTTT 57.400 29.630 0.00 0.00 0.00 1.94
93 94 8.846943 ATCTCAAGTTTTGTTTTCCTTTTTGT 57.153 26.923 0.00 0.00 0.00 2.83
94 95 9.936759 ATCTCAAGTTTTGTTTTCCTTTTTGTA 57.063 25.926 0.00 0.00 0.00 2.41
95 96 9.418045 TCTCAAGTTTTGTTTTCCTTTTTGTAG 57.582 29.630 0.00 0.00 0.00 2.74
96 97 9.418045 CTCAAGTTTTGTTTTCCTTTTTGTAGA 57.582 29.630 0.00 0.00 0.00 2.59
97 98 9.765795 TCAAGTTTTGTTTTCCTTTTTGTAGAA 57.234 25.926 0.00 0.00 0.00 2.10
105 106 9.857957 TGTTTTCCTTTTTGTAGAAATTAACGT 57.142 25.926 0.00 0.00 30.13 3.99
149 150 9.474920 TGCTAACATGTTTTAAAAGAAATCAGG 57.525 29.630 17.78 0.03 0.00 3.86
150 151 9.691362 GCTAACATGTTTTAAAAGAAATCAGGA 57.309 29.630 17.78 0.00 0.00 3.86
153 154 7.670364 ACATGTTTTAAAAGAAATCAGGAGGG 58.330 34.615 0.00 0.00 0.00 4.30
154 155 7.290014 ACATGTTTTAAAAGAAATCAGGAGGGT 59.710 33.333 0.00 0.00 0.00 4.34
155 156 7.284919 TGTTTTAAAAGAAATCAGGAGGGTC 57.715 36.000 0.00 0.00 0.00 4.46
156 157 6.836527 TGTTTTAAAAGAAATCAGGAGGGTCA 59.163 34.615 0.00 0.00 0.00 4.02
157 158 6.894339 TTTAAAAGAAATCAGGAGGGTCAC 57.106 37.500 0.00 0.00 0.00 3.67
158 159 3.441500 AAAGAAATCAGGAGGGTCACC 57.558 47.619 0.00 0.00 0.00 4.02
159 160 0.905357 AGAAATCAGGAGGGTCACCG 59.095 55.000 0.00 0.00 43.47 4.94
160 161 0.744771 GAAATCAGGAGGGTCACCGC 60.745 60.000 0.00 0.00 43.47 5.68
161 162 1.488705 AAATCAGGAGGGTCACCGCA 61.489 55.000 0.00 0.00 43.47 5.69
162 163 1.488705 AATCAGGAGGGTCACCGCAA 61.489 55.000 0.00 0.00 43.47 4.85
163 164 2.185310 ATCAGGAGGGTCACCGCAAC 62.185 60.000 0.00 0.00 43.47 4.17
164 165 3.637273 AGGAGGGTCACCGCAACC 61.637 66.667 0.00 0.00 43.47 3.77
165 166 3.637273 GGAGGGTCACCGCAACCT 61.637 66.667 0.00 0.00 43.47 3.50
166 167 2.047179 GAGGGTCACCGCAACCTC 60.047 66.667 0.00 0.00 43.47 3.85
167 168 3.934391 GAGGGTCACCGCAACCTCG 62.934 68.421 0.00 0.00 43.47 4.63
168 169 3.998672 GGGTCACCGCAACCTCGA 61.999 66.667 0.00 0.00 36.97 4.04
169 170 2.737376 GGTCACCGCAACCTCGAC 60.737 66.667 0.00 0.00 33.78 4.20
170 171 2.028484 GTCACCGCAACCTCGACA 59.972 61.111 0.00 0.00 0.00 4.35
171 172 1.593209 GTCACCGCAACCTCGACAA 60.593 57.895 0.00 0.00 0.00 3.18
172 173 1.300620 TCACCGCAACCTCGACAAG 60.301 57.895 0.00 0.00 0.00 3.16
192 193 4.813346 GGCGGACCTGAAGGAAAA 57.187 55.556 2.62 0.00 38.94 2.29
193 194 3.030415 GGCGGACCTGAAGGAAAAA 57.970 52.632 2.62 0.00 38.94 1.94
212 213 4.864704 AAAAATGCACGAATTGGGTAGT 57.135 36.364 0.00 0.00 0.00 2.73
213 214 3.848272 AAATGCACGAATTGGGTAGTG 57.152 42.857 0.00 0.00 37.63 2.74
214 215 1.750193 ATGCACGAATTGGGTAGTGG 58.250 50.000 0.00 0.00 35.35 4.00
215 216 0.958382 TGCACGAATTGGGTAGTGGC 60.958 55.000 0.00 0.00 35.35 5.01
216 217 1.654023 GCACGAATTGGGTAGTGGCC 61.654 60.000 0.00 0.00 35.35 5.36
217 218 1.078708 ACGAATTGGGTAGTGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
218 219 2.469516 CGAATTGGGTAGTGGCCGC 61.470 63.158 8.71 8.71 0.00 6.53
219 220 2.044352 AATTGGGTAGTGGCCGCC 60.044 61.111 14.07 1.04 0.00 6.13
220 221 2.830186 GAATTGGGTAGTGGCCGCCA 62.830 60.000 14.07 8.43 0.00 5.69
234 235 4.678743 GCCACTCCCACCAACCCC 62.679 72.222 0.00 0.00 0.00 4.95
235 236 3.182263 CCACTCCCACCAACCCCA 61.182 66.667 0.00 0.00 0.00 4.96
236 237 2.115266 CACTCCCACCAACCCCAC 59.885 66.667 0.00 0.00 0.00 4.61
237 238 2.038762 ACTCCCACCAACCCCACT 60.039 61.111 0.00 0.00 0.00 4.00
238 239 1.131303 CACTCCCACCAACCCCACTA 61.131 60.000 0.00 0.00 0.00 2.74
239 240 1.131928 ACTCCCACCAACCCCACTAC 61.132 60.000 0.00 0.00 0.00 2.73
240 241 0.840722 CTCCCACCAACCCCACTACT 60.841 60.000 0.00 0.00 0.00 2.57
241 242 0.492730 TCCCACCAACCCCACTACTA 59.507 55.000 0.00 0.00 0.00 1.82
242 243 1.081513 TCCCACCAACCCCACTACTAT 59.918 52.381 0.00 0.00 0.00 2.12
243 244 2.318514 TCCCACCAACCCCACTACTATA 59.681 50.000 0.00 0.00 0.00 1.31
244 245 3.116959 CCCACCAACCCCACTACTATAA 58.883 50.000 0.00 0.00 0.00 0.98
245 246 3.524380 CCCACCAACCCCACTACTATAAA 59.476 47.826 0.00 0.00 0.00 1.40
246 247 4.384868 CCCACCAACCCCACTACTATAAAG 60.385 50.000 0.00 0.00 0.00 1.85
247 248 4.472108 CCACCAACCCCACTACTATAAAGA 59.528 45.833 0.00 0.00 0.00 2.52
248 249 5.132144 CCACCAACCCCACTACTATAAAGAT 59.868 44.000 0.00 0.00 0.00 2.40
249 250 6.289064 CACCAACCCCACTACTATAAAGATC 58.711 44.000 0.00 0.00 0.00 2.75
250 251 6.099845 CACCAACCCCACTACTATAAAGATCT 59.900 42.308 0.00 0.00 0.00 2.75
251 252 6.326843 ACCAACCCCACTACTATAAAGATCTC 59.673 42.308 0.00 0.00 0.00 2.75
252 253 6.448006 CAACCCCACTACTATAAAGATCTCG 58.552 44.000 0.00 0.00 0.00 4.04
253 254 4.523558 ACCCCACTACTATAAAGATCTCGC 59.476 45.833 0.00 0.00 0.00 5.03
254 255 4.379603 CCCCACTACTATAAAGATCTCGCG 60.380 50.000 0.00 0.00 0.00 5.87
255 256 4.379603 CCCACTACTATAAAGATCTCGCGG 60.380 50.000 6.13 0.00 0.00 6.46
256 257 4.379603 CCACTACTATAAAGATCTCGCGGG 60.380 50.000 6.13 1.01 0.00 6.13
257 258 2.726832 ACTATAAAGATCTCGCGGGC 57.273 50.000 6.13 0.00 0.00 6.13
258 259 1.272769 ACTATAAAGATCTCGCGGGCC 59.727 52.381 6.13 0.00 0.00 5.80
259 260 1.272490 CTATAAAGATCTCGCGGGCCA 59.728 52.381 6.13 0.00 0.00 5.36
260 261 0.468226 ATAAAGATCTCGCGGGCCAA 59.532 50.000 6.13 0.00 0.00 4.52
261 262 0.250793 TAAAGATCTCGCGGGCCAAA 59.749 50.000 6.13 0.00 0.00 3.28
262 263 1.305930 AAAGATCTCGCGGGCCAAAC 61.306 55.000 6.13 0.00 0.00 2.93
263 264 2.435938 GATCTCGCGGGCCAAACA 60.436 61.111 6.13 0.00 0.00 2.83
264 265 1.819632 GATCTCGCGGGCCAAACAT 60.820 57.895 6.13 0.00 0.00 2.71
265 266 2.051804 GATCTCGCGGGCCAAACATG 62.052 60.000 6.13 0.00 0.00 3.21
266 267 2.535485 ATCTCGCGGGCCAAACATGA 62.535 55.000 6.13 0.00 0.00 3.07
267 268 3.039202 CTCGCGGGCCAAACATGAC 62.039 63.158 6.13 0.00 0.00 3.06
268 269 4.114997 CGCGGGCCAAACATGACC 62.115 66.667 4.39 0.00 0.00 4.02
269 270 3.758931 GCGGGCCAAACATGACCC 61.759 66.667 4.39 0.98 39.12 4.46
271 272 3.758931 GGGCCAAACATGACCCGC 61.759 66.667 4.39 0.00 31.32 6.13
272 273 4.114997 GGCCAAACATGACCCGCG 62.115 66.667 0.00 0.00 0.00 6.46
273 274 3.053291 GCCAAACATGACCCGCGA 61.053 61.111 8.23 0.00 0.00 5.87
274 275 3.039202 GCCAAACATGACCCGCGAG 62.039 63.158 8.23 0.00 0.00 5.03
275 276 1.375396 CCAAACATGACCCGCGAGA 60.375 57.895 8.23 0.00 0.00 4.04
276 277 0.953471 CCAAACATGACCCGCGAGAA 60.953 55.000 8.23 0.00 0.00 2.87
277 278 0.165944 CAAACATGACCCGCGAGAAC 59.834 55.000 8.23 0.00 0.00 3.01
278 279 0.250124 AAACATGACCCGCGAGAACA 60.250 50.000 8.23 0.45 0.00 3.18
279 280 0.949105 AACATGACCCGCGAGAACAC 60.949 55.000 8.23 0.00 0.00 3.32
280 281 2.100631 CATGACCCGCGAGAACACC 61.101 63.158 8.23 0.00 0.00 4.16
281 282 2.579657 ATGACCCGCGAGAACACCA 61.580 57.895 8.23 0.00 0.00 4.17
282 283 2.737376 GACCCGCGAGAACACCAC 60.737 66.667 8.23 0.00 0.00 4.16
283 284 3.509137 GACCCGCGAGAACACCACA 62.509 63.158 8.23 0.00 0.00 4.17
284 285 2.738521 CCCGCGAGAACACCACAG 60.739 66.667 8.23 0.00 0.00 3.66
285 286 3.414700 CCGCGAGAACACCACAGC 61.415 66.667 8.23 0.00 0.00 4.40
286 287 2.356313 CGCGAGAACACCACAGCT 60.356 61.111 0.00 0.00 0.00 4.24
287 288 1.956170 CGCGAGAACACCACAGCTT 60.956 57.895 0.00 0.00 0.00 3.74
288 289 1.498865 CGCGAGAACACCACAGCTTT 61.499 55.000 0.00 0.00 0.00 3.51
289 290 0.235926 GCGAGAACACCACAGCTTTC 59.764 55.000 0.00 0.00 0.00 2.62
290 291 0.868406 CGAGAACACCACAGCTTTCC 59.132 55.000 0.00 0.00 0.00 3.13
291 292 1.541233 CGAGAACACCACAGCTTTCCT 60.541 52.381 0.00 0.00 0.00 3.36
292 293 2.147150 GAGAACACCACAGCTTTCCTC 58.853 52.381 0.00 0.00 0.00 3.71
293 294 1.771255 AGAACACCACAGCTTTCCTCT 59.229 47.619 0.00 0.00 0.00 3.69
294 295 2.147150 GAACACCACAGCTTTCCTCTC 58.853 52.381 0.00 0.00 0.00 3.20
295 296 1.428869 ACACCACAGCTTTCCTCTCT 58.571 50.000 0.00 0.00 0.00 3.10
296 297 2.609747 ACACCACAGCTTTCCTCTCTA 58.390 47.619 0.00 0.00 0.00 2.43
297 298 3.177228 ACACCACAGCTTTCCTCTCTAT 58.823 45.455 0.00 0.00 0.00 1.98
298 299 3.196685 ACACCACAGCTTTCCTCTCTATC 59.803 47.826 0.00 0.00 0.00 2.08
299 300 2.428890 ACCACAGCTTTCCTCTCTATCG 59.571 50.000 0.00 0.00 0.00 2.92
300 301 2.468831 CACAGCTTTCCTCTCTATCGC 58.531 52.381 0.00 0.00 0.00 4.58
301 302 1.410882 ACAGCTTTCCTCTCTATCGCC 59.589 52.381 0.00 0.00 0.00 5.54
302 303 1.686052 CAGCTTTCCTCTCTATCGCCT 59.314 52.381 0.00 0.00 0.00 5.52
303 304 1.960689 AGCTTTCCTCTCTATCGCCTC 59.039 52.381 0.00 0.00 0.00 4.70
304 305 1.683917 GCTTTCCTCTCTATCGCCTCA 59.316 52.381 0.00 0.00 0.00 3.86
305 306 2.544903 GCTTTCCTCTCTATCGCCTCAC 60.545 54.545 0.00 0.00 0.00 3.51
306 307 2.738587 TTCCTCTCTATCGCCTCACT 57.261 50.000 0.00 0.00 0.00 3.41
307 308 3.859061 TTCCTCTCTATCGCCTCACTA 57.141 47.619 0.00 0.00 0.00 2.74
308 309 4.374689 TTCCTCTCTATCGCCTCACTAT 57.625 45.455 0.00 0.00 0.00 2.12
309 310 4.374689 TCCTCTCTATCGCCTCACTATT 57.625 45.455 0.00 0.00 0.00 1.73
310 311 4.075682 TCCTCTCTATCGCCTCACTATTG 58.924 47.826 0.00 0.00 0.00 1.90
311 312 3.823873 CCTCTCTATCGCCTCACTATTGT 59.176 47.826 0.00 0.00 0.00 2.71
312 313 4.320861 CCTCTCTATCGCCTCACTATTGTG 60.321 50.000 0.36 0.36 45.07 3.33
313 314 4.207955 TCTCTATCGCCTCACTATTGTGT 58.792 43.478 7.18 0.00 44.14 3.72
314 315 4.036852 TCTCTATCGCCTCACTATTGTGTG 59.963 45.833 7.18 4.90 44.14 3.82
321 322 2.881074 CTCACTATTGTGTGGAGACCG 58.119 52.381 7.18 0.00 44.14 4.79
322 323 2.231478 CTCACTATTGTGTGGAGACCGT 59.769 50.000 7.18 0.00 44.14 4.83
323 324 2.631062 TCACTATTGTGTGGAGACCGTT 59.369 45.455 7.18 0.00 44.14 4.44
324 325 3.070446 TCACTATTGTGTGGAGACCGTTT 59.930 43.478 7.18 0.00 44.14 3.60
325 326 3.186409 CACTATTGTGTGGAGACCGTTTG 59.814 47.826 0.00 0.00 39.24 2.93
326 327 2.631160 ATTGTGTGGAGACCGTTTGA 57.369 45.000 0.00 0.00 0.00 2.69
327 328 2.631160 TTGTGTGGAGACCGTTTGAT 57.369 45.000 0.00 0.00 0.00 2.57
328 329 1.877637 TGTGTGGAGACCGTTTGATG 58.122 50.000 0.00 0.00 0.00 3.07
329 330 1.156736 GTGTGGAGACCGTTTGATGG 58.843 55.000 0.00 0.00 0.00 3.51
330 331 1.052617 TGTGGAGACCGTTTGATGGA 58.947 50.000 0.00 0.00 0.00 3.41
331 332 1.270625 TGTGGAGACCGTTTGATGGAC 60.271 52.381 0.00 0.00 0.00 4.02
332 333 1.052617 TGGAGACCGTTTGATGGACA 58.947 50.000 0.00 0.00 0.00 4.02
333 334 1.270625 TGGAGACCGTTTGATGGACAC 60.271 52.381 0.00 0.00 0.00 3.67
334 335 1.270625 GGAGACCGTTTGATGGACACA 60.271 52.381 0.00 0.00 0.00 3.72
335 336 2.615493 GGAGACCGTTTGATGGACACAT 60.615 50.000 0.00 0.00 40.85 3.21
347 348 3.634397 TGGACACATCAATTCTCTCCC 57.366 47.619 0.00 0.00 0.00 4.30
348 349 2.093500 TGGACACATCAATTCTCTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
349 350 2.168521 GGACACATCAATTCTCTCCCGA 59.831 50.000 0.00 0.00 0.00 5.14
350 351 3.181461 GGACACATCAATTCTCTCCCGAT 60.181 47.826 0.00 0.00 0.00 4.18
351 352 3.801698 ACACATCAATTCTCTCCCGATG 58.198 45.455 0.00 0.00 39.47 3.84
352 353 2.547211 CACATCAATTCTCTCCCGATGC 59.453 50.000 0.00 0.00 37.56 3.91
353 354 2.437281 ACATCAATTCTCTCCCGATGCT 59.563 45.455 0.00 0.00 37.56 3.79
354 355 3.118112 ACATCAATTCTCTCCCGATGCTT 60.118 43.478 0.00 0.00 37.56 3.91
355 356 3.185246 TCAATTCTCTCCCGATGCTTC 57.815 47.619 0.00 0.00 0.00 3.86
356 357 2.768527 TCAATTCTCTCCCGATGCTTCT 59.231 45.455 0.00 0.00 0.00 2.85
357 358 3.129871 CAATTCTCTCCCGATGCTTCTC 58.870 50.000 0.00 0.00 0.00 2.87
358 359 0.741326 TTCTCTCCCGATGCTTCTCG 59.259 55.000 0.00 0.00 38.37 4.04
359 360 1.299773 CTCTCCCGATGCTTCTCGC 60.300 63.158 0.00 0.00 37.33 5.03
381 382 2.863401 AAAAACTCTCCCGTTGCAAC 57.137 45.000 19.89 19.89 0.00 4.17
391 392 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
392 393 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
393 394 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
394 395 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
395 396 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
396 397 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
431 432 1.662629 CGAAGACACAAGCATAGCAGG 59.337 52.381 0.00 0.00 0.00 4.85
489 490 7.201644 GCAGCAGCAGAACTAAATAGAAACATA 60.202 37.037 0.00 0.00 41.58 2.29
557 585 2.783135 TCTCTGAAACCATGGCAACTC 58.217 47.619 13.04 3.80 37.61 3.01
581 609 8.153221 TCTGGAAAAATCTGTAATGTACCCTA 57.847 34.615 0.00 0.00 0.00 3.53
676 708 2.993899 AGCGAGGAACACTAAATTGACG 59.006 45.455 0.00 0.00 0.00 4.35
698 730 1.648568 TGAGATGGGAGGGAGAAGAGT 59.351 52.381 0.00 0.00 0.00 3.24
699 731 2.038659 GAGATGGGAGGGAGAAGAGTG 58.961 57.143 0.00 0.00 0.00 3.51
700 732 1.127343 GATGGGAGGGAGAAGAGTGG 58.873 60.000 0.00 0.00 0.00 4.00
704 742 0.325203 GGAGGGAGAAGAGTGGCTCT 60.325 60.000 0.00 0.00 43.37 4.09
783 825 2.354305 GACGAGCGAACGTGGTGT 60.354 61.111 11.55 0.00 46.52 4.16
785 827 0.661187 GACGAGCGAACGTGGTGTTA 60.661 55.000 11.55 0.00 46.52 2.41
848 1549 2.955402 GTCCGACGTGCTGACTCT 59.045 61.111 0.00 0.00 0.00 3.24
944 1654 3.591023 TGGCGAAGATGAATACGAAACA 58.409 40.909 0.00 0.00 0.00 2.83
954 1664 2.157834 ATACGAAACAAGCACGACCA 57.842 45.000 0.00 0.00 0.00 4.02
959 1669 1.433837 AAACAAGCACGACCACGACC 61.434 55.000 0.00 0.00 42.66 4.79
961 1671 3.231736 AAGCACGACCACGACCCT 61.232 61.111 0.00 0.00 42.66 4.34
962 1672 3.515316 AAGCACGACCACGACCCTG 62.515 63.158 0.00 0.00 42.66 4.45
963 1673 3.986006 GCACGACCACGACCCTGA 61.986 66.667 0.00 0.00 42.66 3.86
1025 1763 0.252742 ATTCTCCCGGTTCCTCACCT 60.253 55.000 0.00 0.00 44.69 4.00
1026 1764 0.410663 TTCTCCCGGTTCCTCACCTA 59.589 55.000 0.00 0.00 44.69 3.08
1027 1765 0.033405 TCTCCCGGTTCCTCACCTAG 60.033 60.000 0.00 0.00 44.69 3.02
1533 2297 0.606604 TCGACCTTACTTGCCAGACC 59.393 55.000 0.00 0.00 0.00 3.85
1670 3007 6.371271 GCTTTTGAGTAGAGAAGAGAAGCATT 59.629 38.462 0.00 0.00 37.50 3.56
1674 3011 7.710676 TGAGTAGAGAAGAGAAGCATTTAGT 57.289 36.000 0.00 0.00 0.00 2.24
1682 3019 4.184629 AGAGAAGCATTTAGTTAGGCACG 58.815 43.478 0.00 0.00 0.00 5.34
1751 3095 3.334691 TGCAAGAAGAAACCTATCGTGG 58.665 45.455 0.00 0.00 0.00 4.94
1752 3096 3.244422 TGCAAGAAGAAACCTATCGTGGT 60.244 43.478 0.00 0.00 43.11 4.16
1753 3097 3.371285 GCAAGAAGAAACCTATCGTGGTC 59.629 47.826 0.00 0.00 39.83 4.02
1754 3098 3.505464 AGAAGAAACCTATCGTGGTCG 57.495 47.619 0.00 0.00 39.83 4.79
1755 3099 2.165845 AGAAGAAACCTATCGTGGTCGG 59.834 50.000 0.00 0.00 39.83 4.79
1756 3100 1.553706 AGAAACCTATCGTGGTCGGT 58.446 50.000 0.00 0.00 39.83 4.69
1757 3101 1.897802 AGAAACCTATCGTGGTCGGTT 59.102 47.619 0.00 0.00 39.83 4.44
1758 3102 1.997606 GAAACCTATCGTGGTCGGTTG 59.002 52.381 0.00 0.00 39.53 3.77
1759 3103 0.971386 AACCTATCGTGGTCGGTTGT 59.029 50.000 0.00 0.00 39.83 3.32
1760 3104 0.529378 ACCTATCGTGGTCGGTTGTC 59.471 55.000 0.00 0.00 34.86 3.18
1761 3105 0.528924 CCTATCGTGGTCGGTTGTCA 59.471 55.000 0.00 0.00 37.69 3.58
1762 3106 1.136305 CCTATCGTGGTCGGTTGTCAT 59.864 52.381 0.00 0.00 37.69 3.06
1763 3107 2.418197 CCTATCGTGGTCGGTTGTCATT 60.418 50.000 0.00 0.00 37.69 2.57
1764 3108 3.181484 CCTATCGTGGTCGGTTGTCATTA 60.181 47.826 0.00 0.00 37.69 1.90
1765 3109 2.357327 TCGTGGTCGGTTGTCATTAG 57.643 50.000 0.00 0.00 37.69 1.73
1766 3110 1.614903 TCGTGGTCGGTTGTCATTAGT 59.385 47.619 0.00 0.00 37.69 2.24
1767 3111 2.036217 TCGTGGTCGGTTGTCATTAGTT 59.964 45.455 0.00 0.00 37.69 2.24
1768 3112 2.410730 CGTGGTCGGTTGTCATTAGTTC 59.589 50.000 0.00 0.00 0.00 3.01
1817 3178 6.462552 TTGTCAAGTGGATGTTTTGATTGA 57.537 33.333 0.00 0.00 33.82 2.57
1824 3185 9.426837 CAAGTGGATGTTTTGATTGATAACATT 57.573 29.630 0.00 0.00 41.24 2.71
1869 3808 7.967854 CGTGTGATTTGAGATATTTTTGGCTAA 59.032 33.333 0.00 0.00 0.00 3.09
2008 3974 2.039974 AGCATTTGTCCATCGCGCA 61.040 52.632 8.75 0.00 0.00 6.09
2064 4030 1.001406 CAGGTCTCCACTGGTCTTGAC 59.999 57.143 0.00 0.80 32.38 3.18
2068 4034 2.099652 CTCCACTGGTCTTGACGCCA 62.100 60.000 0.00 0.00 0.00 5.69
2082 4048 2.200092 GCCAACCAGGTCCCCAAA 59.800 61.111 0.00 0.00 40.61 3.28
2086 4052 1.266178 CAACCAGGTCCCCAAAATCC 58.734 55.000 0.00 0.00 0.00 3.01
2087 4053 0.116342 AACCAGGTCCCCAAAATCCC 59.884 55.000 0.00 0.00 0.00 3.85
2088 4054 1.379843 CCAGGTCCCCAAAATCCCG 60.380 63.158 0.00 0.00 0.00 5.14
2089 4055 1.382629 CAGGTCCCCAAAATCCCGT 59.617 57.895 0.00 0.00 0.00 5.28
2090 4056 0.965363 CAGGTCCCCAAAATCCCGTG 60.965 60.000 0.00 0.00 0.00 4.94
2091 4057 2.348104 GGTCCCCAAAATCCCGTGC 61.348 63.158 0.00 0.00 0.00 5.34
2092 4058 2.036572 TCCCCAAAATCCCGTGCC 59.963 61.111 0.00 0.00 0.00 5.01
2093 4059 2.283532 CCCCAAAATCCCGTGCCA 60.284 61.111 0.00 0.00 0.00 4.92
2094 4060 2.645192 CCCCAAAATCCCGTGCCAC 61.645 63.158 0.00 0.00 0.00 5.01
2095 4061 1.606313 CCCAAAATCCCGTGCCACT 60.606 57.895 0.00 0.00 0.00 4.00
2096 4062 1.184970 CCCAAAATCCCGTGCCACTT 61.185 55.000 0.00 0.00 0.00 3.16
2097 4063 0.243636 CCAAAATCCCGTGCCACTTC 59.756 55.000 0.00 0.00 0.00 3.01
2098 4064 0.109781 CAAAATCCCGTGCCACTTCG 60.110 55.000 0.00 0.00 0.00 3.79
2099 4065 0.536460 AAAATCCCGTGCCACTTCGT 60.536 50.000 0.00 0.00 0.00 3.85
2100 4066 0.953960 AAATCCCGTGCCACTTCGTC 60.954 55.000 0.00 0.00 0.00 4.20
2101 4067 3.642778 ATCCCGTGCCACTTCGTCG 62.643 63.158 0.00 0.00 0.00 5.12
2102 4068 4.657824 CCCGTGCCACTTCGTCGT 62.658 66.667 0.00 0.00 0.00 4.34
2103 4069 2.660552 CCGTGCCACTTCGTCGTT 60.661 61.111 0.00 0.00 0.00 3.85
2104 4070 2.241880 CCGTGCCACTTCGTCGTTT 61.242 57.895 0.00 0.00 0.00 3.60
2105 4071 1.639534 CGTGCCACTTCGTCGTTTT 59.360 52.632 0.00 0.00 0.00 2.43
2106 4072 0.027063 CGTGCCACTTCGTCGTTTTT 59.973 50.000 0.00 0.00 0.00 1.94
2122 4088 2.465860 TTTTTGCTAGCGCCTAGTGA 57.534 45.000 10.77 0.00 36.53 3.41
2123 4089 2.010145 TTTTGCTAGCGCCTAGTGAG 57.990 50.000 10.77 0.00 36.53 3.51
2124 4090 1.182667 TTTGCTAGCGCCTAGTGAGA 58.817 50.000 10.77 0.00 36.53 3.27
2125 4091 0.741326 TTGCTAGCGCCTAGTGAGAG 59.259 55.000 10.77 0.00 36.53 3.20
2126 4092 1.103987 TGCTAGCGCCTAGTGAGAGG 61.104 60.000 10.77 0.00 36.53 3.69
2127 4093 0.820074 GCTAGCGCCTAGTGAGAGGA 60.820 60.000 2.29 0.00 39.15 3.71
2152 4118 1.806568 GAGAGACAGGCAGGACGAG 59.193 63.158 0.00 0.00 0.00 4.18
2160 4126 2.650116 GGCAGGACGAGCTTCTCCA 61.650 63.158 12.03 0.00 0.00 3.86
2164 4130 2.283529 GGACGAGCTTCTCCACCCA 61.284 63.158 5.87 0.00 0.00 4.51
2171 4137 1.752198 CTTCTCCACCCAACGTCCA 59.248 57.895 0.00 0.00 0.00 4.02
2178 4144 1.003355 ACCCAACGTCCATGCTCAG 60.003 57.895 0.00 0.00 0.00 3.35
2183 4149 3.250323 CGTCCATGCTCAGCGTCG 61.250 66.667 0.00 0.00 0.00 5.12
2184 4150 3.558411 GTCCATGCTCAGCGTCGC 61.558 66.667 9.80 9.80 0.00 5.19
2185 4151 3.763356 TCCATGCTCAGCGTCGCT 61.763 61.111 15.47 15.47 40.77 4.93
2244 4210 1.723542 CGAGCGCCATCATTCAGTATC 59.276 52.381 2.29 0.00 0.00 2.24
2248 4214 3.056536 AGCGCCATCATTCAGTATCGTAT 60.057 43.478 2.29 0.00 0.00 3.06
2253 4219 6.454715 CGCCATCATTCAGTATCGTATTGATG 60.455 42.308 0.00 0.00 37.99 3.07
2278 4244 8.301002 TGTAGTATTTCTTTTGGTTATGTTGGC 58.699 33.333 0.00 0.00 0.00 4.52
2305 4271 3.988976 AGCATGTGACATTCCACTAGT 57.011 42.857 0.00 0.00 37.89 2.57
2308 4274 3.871594 GCATGTGACATTCCACTAGTACC 59.128 47.826 0.00 0.00 37.89 3.34
2313 4279 3.442625 TGACATTCCACTAGTACCACTCG 59.557 47.826 0.00 0.00 0.00 4.18
2317 4284 3.144657 TCCACTAGTACCACTCGTTCA 57.855 47.619 0.00 0.00 0.00 3.18
2341 4308 9.485206 TCACTTCTTAATTAGGGATTAATACGC 57.515 33.333 0.00 0.00 39.00 4.42
2342 4309 8.718734 CACTTCTTAATTAGGGATTAATACGCC 58.281 37.037 0.00 0.00 39.00 5.68
2368 4335 4.003648 GTGATGGACATTATTCCGGGATC 58.996 47.826 0.00 0.00 38.69 3.36
2369 4336 2.831685 TGGACATTATTCCGGGATCG 57.168 50.000 0.00 0.00 38.69 3.69
2452 4434 3.305813 CGCTCTGTTTTGGACCTACAGTA 60.306 47.826 16.41 7.40 40.08 2.74
2470 4458 7.808856 CCTACAGTACTACTTGTGTTTCTCTTC 59.191 40.741 0.00 0.00 0.00 2.87
2475 4463 9.080097 AGTACTACTTGTGTTTCTCTTCTGTAT 57.920 33.333 0.00 0.00 0.00 2.29
2490 4478 9.258826 TCTCTTCTGTATAGTACTACGTTCATC 57.741 37.037 4.31 0.00 0.00 2.92
2493 4481 7.187244 TCTGTATAGTACTACGTTCATCTGC 57.813 40.000 4.31 0.00 0.00 4.26
2516 4504 4.207955 GACTGTCTTCTTTTCCCCAAGTT 58.792 43.478 0.00 0.00 0.00 2.66
2517 4505 4.610333 ACTGTCTTCTTTTCCCCAAGTTT 58.390 39.130 0.00 0.00 0.00 2.66
2518 4506 5.023452 ACTGTCTTCTTTTCCCCAAGTTTT 58.977 37.500 0.00 0.00 0.00 2.43
2519 4507 5.127194 ACTGTCTTCTTTTCCCCAAGTTTTC 59.873 40.000 0.00 0.00 0.00 2.29
2520 4508 5.020132 TGTCTTCTTTTCCCCAAGTTTTCA 58.980 37.500 0.00 0.00 0.00 2.69
2521 4509 5.105513 TGTCTTCTTTTCCCCAAGTTTTCAC 60.106 40.000 0.00 0.00 0.00 3.18
2522 4510 5.127194 GTCTTCTTTTCCCCAAGTTTTCACT 59.873 40.000 0.00 0.00 33.11 3.41
2529 4524 5.223449 TCCCCAAGTTTTCACTAGTACTG 57.777 43.478 5.39 0.00 30.68 2.74
2544 4539 5.756347 ACTAGTACTGCGTTTGAACAATTGA 59.244 36.000 13.59 0.00 0.00 2.57
2545 4540 5.493133 AGTACTGCGTTTGAACAATTGAA 57.507 34.783 13.59 0.00 0.00 2.69
2546 4541 6.072112 AGTACTGCGTTTGAACAATTGAAT 57.928 33.333 13.59 0.00 0.00 2.57
2547 4542 7.197071 AGTACTGCGTTTGAACAATTGAATA 57.803 32.000 13.59 0.00 0.00 1.75
2548 4543 7.644490 AGTACTGCGTTTGAACAATTGAATAA 58.356 30.769 13.59 0.79 0.00 1.40
2549 4544 8.132362 AGTACTGCGTTTGAACAATTGAATAAA 58.868 29.630 13.59 7.01 0.00 1.40
2550 4545 7.763172 ACTGCGTTTGAACAATTGAATAAAA 57.237 28.000 13.59 3.62 0.00 1.52
2630 4625 5.582665 GCTAGCTAGCTGTTACTTGTCATTT 59.417 40.000 33.71 0.00 45.62 2.32
2666 4661 2.130272 TCCTGTCGTGCTACTGATCT 57.870 50.000 0.00 0.00 0.00 2.75
2688 4684 1.217942 AGGTTTGCCCTCCTGAAACTT 59.782 47.619 0.00 0.00 40.71 2.66
2723 4719 1.774110 TTTCCTTTTGCTGCACTGGA 58.226 45.000 0.00 7.60 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.529780 TTAAGGCGGAGAAACGAACA 57.470 45.000 0.00 0.00 35.47 3.18
1 2 3.883631 TTTTAAGGCGGAGAAACGAAC 57.116 42.857 0.00 0.00 35.47 3.95
2 3 4.515944 TCATTTTTAAGGCGGAGAAACGAA 59.484 37.500 0.00 0.00 35.47 3.85
4 5 4.413495 TCATTTTTAAGGCGGAGAAACG 57.587 40.909 0.00 0.00 0.00 3.60
5 6 5.949735 TGATCATTTTTAAGGCGGAGAAAC 58.050 37.500 0.00 0.00 0.00 2.78
6 7 6.563422 CATGATCATTTTTAAGGCGGAGAAA 58.437 36.000 5.16 0.00 0.00 2.52
7 8 5.450412 GCATGATCATTTTTAAGGCGGAGAA 60.450 40.000 5.16 0.00 0.00 2.87
8 9 4.036734 GCATGATCATTTTTAAGGCGGAGA 59.963 41.667 5.16 0.00 0.00 3.71
9 10 4.037208 AGCATGATCATTTTTAAGGCGGAG 59.963 41.667 5.16 0.00 0.00 4.63
10 11 3.953612 AGCATGATCATTTTTAAGGCGGA 59.046 39.130 5.16 0.00 0.00 5.54
11 12 4.311816 AGCATGATCATTTTTAAGGCGG 57.688 40.909 5.16 0.00 0.00 6.13
12 13 5.806502 TGAAAGCATGATCATTTTTAAGGCG 59.193 36.000 5.16 0.00 0.00 5.52
13 14 7.599630 TTGAAAGCATGATCATTTTTAAGGC 57.400 32.000 5.16 4.61 0.00 4.35
17 18 9.545105 ACACTTTTGAAAGCATGATCATTTTTA 57.455 25.926 5.16 0.00 39.63 1.52
18 19 8.441312 ACACTTTTGAAAGCATGATCATTTTT 57.559 26.923 5.16 9.81 39.63 1.94
19 20 8.441312 AACACTTTTGAAAGCATGATCATTTT 57.559 26.923 5.16 5.23 39.63 1.82
20 21 8.339714 CAAACACTTTTGAAAGCATGATCATTT 58.660 29.630 5.16 0.00 44.38 2.32
21 22 7.496591 ACAAACACTTTTGAAAGCATGATCATT 59.503 29.630 5.16 0.00 44.38 2.57
22 23 6.987992 ACAAACACTTTTGAAAGCATGATCAT 59.012 30.769 1.18 1.18 44.38 2.45
23 24 6.256104 CACAAACACTTTTGAAAGCATGATCA 59.744 34.615 0.00 0.00 44.38 2.92
24 25 6.476380 TCACAAACACTTTTGAAAGCATGATC 59.524 34.615 0.00 0.00 44.38 2.92
25 26 6.339730 TCACAAACACTTTTGAAAGCATGAT 58.660 32.000 0.00 0.00 44.38 2.45
26 27 5.718146 TCACAAACACTTTTGAAAGCATGA 58.282 33.333 0.00 0.00 44.38 3.07
27 28 6.406093 TTCACAAACACTTTTGAAAGCATG 57.594 33.333 4.18 0.00 44.38 4.06
28 29 7.614124 AATTCACAAACACTTTTGAAAGCAT 57.386 28.000 4.18 0.00 44.38 3.79
29 30 7.432350 AAATTCACAAACACTTTTGAAAGCA 57.568 28.000 4.18 0.00 44.38 3.91
30 31 9.476761 CTTAAATTCACAAACACTTTTGAAAGC 57.523 29.630 4.18 0.00 44.38 3.51
55 56 9.579932 ACAAAACTTGAGATAGGAAGAATTTCT 57.420 29.630 0.00 0.00 33.68 2.52
60 61 8.630037 GGAAAACAAAACTTGAGATAGGAAGAA 58.370 33.333 0.00 0.00 0.00 2.52
61 62 7.998964 AGGAAAACAAAACTTGAGATAGGAAGA 59.001 33.333 0.00 0.00 0.00 2.87
62 63 8.171164 AGGAAAACAAAACTTGAGATAGGAAG 57.829 34.615 0.00 0.00 0.00 3.46
63 64 8.533569 AAGGAAAACAAAACTTGAGATAGGAA 57.466 30.769 0.00 0.00 0.00 3.36
64 65 8.533569 AAAGGAAAACAAAACTTGAGATAGGA 57.466 30.769 0.00 0.00 0.00 2.94
65 66 9.599866 AAAAAGGAAAACAAAACTTGAGATAGG 57.400 29.630 0.00 0.00 0.00 2.57
67 68 9.936759 ACAAAAAGGAAAACAAAACTTGAGATA 57.063 25.926 0.00 0.00 0.00 1.98
68 69 8.846943 ACAAAAAGGAAAACAAAACTTGAGAT 57.153 26.923 0.00 0.00 0.00 2.75
69 70 9.418045 CTACAAAAAGGAAAACAAAACTTGAGA 57.582 29.630 0.00 0.00 0.00 3.27
70 71 9.418045 TCTACAAAAAGGAAAACAAAACTTGAG 57.582 29.630 0.00 0.00 0.00 3.02
71 72 9.765795 TTCTACAAAAAGGAAAACAAAACTTGA 57.234 25.926 0.00 0.00 0.00 3.02
79 80 9.857957 ACGTTAATTTCTACAAAAAGGAAAACA 57.142 25.926 0.00 0.00 33.58 2.83
123 124 9.474920 CCTGATTTCTTTTAAAACATGTTAGCA 57.525 29.630 12.39 0.71 0.00 3.49
124 125 9.691362 TCCTGATTTCTTTTAAAACATGTTAGC 57.309 29.630 12.39 0.00 0.00 3.09
127 128 8.150296 CCCTCCTGATTTCTTTTAAAACATGTT 58.850 33.333 4.92 4.92 0.00 2.71
128 129 7.290014 ACCCTCCTGATTTCTTTTAAAACATGT 59.710 33.333 0.00 0.00 0.00 3.21
129 130 7.670364 ACCCTCCTGATTTCTTTTAAAACATG 58.330 34.615 0.00 0.00 0.00 3.21
130 131 7.508977 TGACCCTCCTGATTTCTTTTAAAACAT 59.491 33.333 0.00 0.00 0.00 2.71
131 132 6.836527 TGACCCTCCTGATTTCTTTTAAAACA 59.163 34.615 0.00 0.00 0.00 2.83
132 133 7.145985 GTGACCCTCCTGATTTCTTTTAAAAC 58.854 38.462 0.00 0.00 0.00 2.43
133 134 6.266786 GGTGACCCTCCTGATTTCTTTTAAAA 59.733 38.462 0.00 0.00 0.00 1.52
134 135 5.773176 GGTGACCCTCCTGATTTCTTTTAAA 59.227 40.000 0.00 0.00 0.00 1.52
135 136 5.321927 GGTGACCCTCCTGATTTCTTTTAA 58.678 41.667 0.00 0.00 0.00 1.52
136 137 4.564821 CGGTGACCCTCCTGATTTCTTTTA 60.565 45.833 0.00 0.00 0.00 1.52
137 138 3.767711 GGTGACCCTCCTGATTTCTTTT 58.232 45.455 0.00 0.00 0.00 2.27
138 139 2.290323 CGGTGACCCTCCTGATTTCTTT 60.290 50.000 0.00 0.00 0.00 2.52
139 140 1.279271 CGGTGACCCTCCTGATTTCTT 59.721 52.381 0.00 0.00 0.00 2.52
140 141 0.905357 CGGTGACCCTCCTGATTTCT 59.095 55.000 0.00 0.00 0.00 2.52
141 142 0.744771 GCGGTGACCCTCCTGATTTC 60.745 60.000 0.00 0.00 0.00 2.17
142 143 1.299976 GCGGTGACCCTCCTGATTT 59.700 57.895 0.00 0.00 0.00 2.17
143 144 1.488705 TTGCGGTGACCCTCCTGATT 61.489 55.000 0.00 0.00 0.00 2.57
144 145 1.918293 TTGCGGTGACCCTCCTGAT 60.918 57.895 0.00 0.00 0.00 2.90
145 146 2.525629 TTGCGGTGACCCTCCTGA 60.526 61.111 0.00 0.00 0.00 3.86
146 147 2.358737 GTTGCGGTGACCCTCCTG 60.359 66.667 0.00 0.00 0.00 3.86
147 148 3.637273 GGTTGCGGTGACCCTCCT 61.637 66.667 0.00 0.00 0.00 3.69
148 149 3.607370 GAGGTTGCGGTGACCCTCC 62.607 68.421 0.00 0.00 38.01 4.30
149 150 2.047179 GAGGTTGCGGTGACCCTC 60.047 66.667 0.00 0.00 37.93 4.30
150 151 4.003788 CGAGGTTGCGGTGACCCT 62.004 66.667 0.00 0.00 37.93 4.34
151 152 3.998672 TCGAGGTTGCGGTGACCC 61.999 66.667 0.00 0.00 37.93 4.46
152 153 2.737376 GTCGAGGTTGCGGTGACC 60.737 66.667 0.00 0.00 37.44 4.02
153 154 1.557443 CTTGTCGAGGTTGCGGTGAC 61.557 60.000 0.00 0.00 0.00 3.67
154 155 1.300620 CTTGTCGAGGTTGCGGTGA 60.301 57.895 0.00 0.00 0.00 4.02
155 156 2.317609 CCTTGTCGAGGTTGCGGTG 61.318 63.158 0.00 0.00 40.95 4.94
156 157 2.030562 CCTTGTCGAGGTTGCGGT 59.969 61.111 0.00 0.00 40.95 5.68
157 158 1.738099 CTCCTTGTCGAGGTTGCGG 60.738 63.158 6.00 0.00 46.39 5.69
158 159 1.738099 CCTCCTTGTCGAGGTTGCG 60.738 63.158 6.00 0.00 46.39 4.85
159 160 4.285851 CCTCCTTGTCGAGGTTGC 57.714 61.111 6.00 0.00 46.39 4.17
164 165 2.182030 GTCCGCCTCCTTGTCGAG 59.818 66.667 0.00 0.00 0.00 4.04
165 166 3.379445 GGTCCGCCTCCTTGTCGA 61.379 66.667 0.00 0.00 0.00 4.20
166 167 3.382832 AGGTCCGCCTCCTTGTCG 61.383 66.667 0.00 0.00 42.67 4.35
167 168 1.827399 TTCAGGTCCGCCTCCTTGTC 61.827 60.000 0.00 0.00 44.97 3.18
168 169 1.831652 CTTCAGGTCCGCCTCCTTGT 61.832 60.000 0.00 0.00 44.97 3.16
169 170 1.078848 CTTCAGGTCCGCCTCCTTG 60.079 63.158 0.00 0.00 44.97 3.61
170 171 2.294078 CCTTCAGGTCCGCCTCCTT 61.294 63.158 0.00 0.00 44.97 3.36
171 172 2.685380 CCTTCAGGTCCGCCTCCT 60.685 66.667 0.00 0.00 44.97 3.69
172 173 1.838073 TTTCCTTCAGGTCCGCCTCC 61.838 60.000 0.00 0.00 44.97 4.30
173 174 0.036306 TTTTCCTTCAGGTCCGCCTC 59.964 55.000 0.00 0.00 44.97 4.70
175 176 3.030415 TTTTTCCTTCAGGTCCGCC 57.970 52.632 0.00 0.00 36.34 6.13
191 192 4.555262 CACTACCCAATTCGTGCATTTTT 58.445 39.130 0.00 0.00 0.00 1.94
192 193 3.056891 CCACTACCCAATTCGTGCATTTT 60.057 43.478 0.00 0.00 0.00 1.82
193 194 2.491693 CCACTACCCAATTCGTGCATTT 59.508 45.455 0.00 0.00 0.00 2.32
194 195 2.091541 CCACTACCCAATTCGTGCATT 58.908 47.619 0.00 0.00 0.00 3.56
195 196 1.750193 CCACTACCCAATTCGTGCAT 58.250 50.000 0.00 0.00 0.00 3.96
196 197 0.958382 GCCACTACCCAATTCGTGCA 60.958 55.000 0.00 0.00 0.00 4.57
197 198 1.654023 GGCCACTACCCAATTCGTGC 61.654 60.000 0.00 0.00 0.00 5.34
198 199 1.366111 CGGCCACTACCCAATTCGTG 61.366 60.000 2.24 0.00 0.00 4.35
199 200 1.078708 CGGCCACTACCCAATTCGT 60.079 57.895 2.24 0.00 0.00 3.85
200 201 2.469516 GCGGCCACTACCCAATTCG 61.470 63.158 2.24 0.00 0.00 3.34
201 202 2.119029 GGCGGCCACTACCCAATTC 61.119 63.158 15.62 0.00 0.00 2.17
202 203 2.044352 GGCGGCCACTACCCAATT 60.044 61.111 15.62 0.00 0.00 2.32
203 204 3.334891 TGGCGGCCACTACCCAAT 61.335 61.111 19.77 0.00 0.00 3.16
217 218 4.678743 GGGGTTGGTGGGAGTGGC 62.679 72.222 0.00 0.00 0.00 5.01
218 219 3.182263 TGGGGTTGGTGGGAGTGG 61.182 66.667 0.00 0.00 0.00 4.00
219 220 1.131303 TAGTGGGGTTGGTGGGAGTG 61.131 60.000 0.00 0.00 0.00 3.51
220 221 1.131928 GTAGTGGGGTTGGTGGGAGT 61.132 60.000 0.00 0.00 0.00 3.85
221 222 0.840722 AGTAGTGGGGTTGGTGGGAG 60.841 60.000 0.00 0.00 0.00 4.30
222 223 0.492730 TAGTAGTGGGGTTGGTGGGA 59.507 55.000 0.00 0.00 0.00 4.37
223 224 1.591768 ATAGTAGTGGGGTTGGTGGG 58.408 55.000 0.00 0.00 0.00 4.61
224 225 4.472108 TCTTTATAGTAGTGGGGTTGGTGG 59.528 45.833 0.00 0.00 0.00 4.61
225 226 5.687166 TCTTTATAGTAGTGGGGTTGGTG 57.313 43.478 0.00 0.00 0.00 4.17
226 227 6.210522 AGATCTTTATAGTAGTGGGGTTGGT 58.789 40.000 0.00 0.00 0.00 3.67
227 228 6.516860 CGAGATCTTTATAGTAGTGGGGTTGG 60.517 46.154 0.00 0.00 0.00 3.77
228 229 6.448006 CGAGATCTTTATAGTAGTGGGGTTG 58.552 44.000 0.00 0.00 0.00 3.77
229 230 5.010820 GCGAGATCTTTATAGTAGTGGGGTT 59.989 44.000 0.00 0.00 0.00 4.11
230 231 4.523558 GCGAGATCTTTATAGTAGTGGGGT 59.476 45.833 0.00 0.00 0.00 4.95
231 232 4.379603 CGCGAGATCTTTATAGTAGTGGGG 60.380 50.000 0.00 0.00 0.00 4.96
232 233 4.379603 CCGCGAGATCTTTATAGTAGTGGG 60.380 50.000 8.23 0.00 0.00 4.61
233 234 4.379603 CCCGCGAGATCTTTATAGTAGTGG 60.380 50.000 8.23 0.00 0.00 4.00
234 235 4.724303 CCCGCGAGATCTTTATAGTAGTG 58.276 47.826 8.23 0.00 0.00 2.74
235 236 3.190953 GCCCGCGAGATCTTTATAGTAGT 59.809 47.826 8.23 0.00 0.00 2.73
236 237 3.427773 GGCCCGCGAGATCTTTATAGTAG 60.428 52.174 8.23 0.00 0.00 2.57
237 238 2.490903 GGCCCGCGAGATCTTTATAGTA 59.509 50.000 8.23 0.00 0.00 1.82
238 239 1.272769 GGCCCGCGAGATCTTTATAGT 59.727 52.381 8.23 0.00 0.00 2.12
239 240 1.272490 TGGCCCGCGAGATCTTTATAG 59.728 52.381 8.23 0.00 0.00 1.31
240 241 1.334160 TGGCCCGCGAGATCTTTATA 58.666 50.000 8.23 0.00 0.00 0.98
241 242 0.468226 TTGGCCCGCGAGATCTTTAT 59.532 50.000 8.23 0.00 0.00 1.40
242 243 0.250793 TTTGGCCCGCGAGATCTTTA 59.749 50.000 8.23 0.00 0.00 1.85
243 244 1.002624 TTTGGCCCGCGAGATCTTT 60.003 52.632 8.23 0.00 0.00 2.52
244 245 1.745489 GTTTGGCCCGCGAGATCTT 60.745 57.895 8.23 0.00 0.00 2.40
245 246 2.125106 GTTTGGCCCGCGAGATCT 60.125 61.111 8.23 0.00 0.00 2.75
246 247 1.819632 ATGTTTGGCCCGCGAGATC 60.820 57.895 8.23 0.00 0.00 2.75
247 248 2.114670 CATGTTTGGCCCGCGAGAT 61.115 57.895 8.23 0.00 0.00 2.75
248 249 2.745884 CATGTTTGGCCCGCGAGA 60.746 61.111 8.23 0.00 0.00 4.04
249 250 2.745884 TCATGTTTGGCCCGCGAG 60.746 61.111 8.23 0.00 0.00 5.03
250 251 3.053291 GTCATGTTTGGCCCGCGA 61.053 61.111 8.23 0.00 0.00 5.87
251 252 4.114997 GGTCATGTTTGGCCCGCG 62.115 66.667 0.00 0.00 42.15 6.46
256 257 3.039202 CTCGCGGGTCATGTTTGGC 62.039 63.158 6.13 0.00 0.00 4.52
257 258 0.953471 TTCTCGCGGGTCATGTTTGG 60.953 55.000 5.57 0.00 0.00 3.28
258 259 0.165944 GTTCTCGCGGGTCATGTTTG 59.834 55.000 5.57 0.00 0.00 2.93
259 260 0.250124 TGTTCTCGCGGGTCATGTTT 60.250 50.000 5.57 0.00 0.00 2.83
260 261 0.949105 GTGTTCTCGCGGGTCATGTT 60.949 55.000 5.57 0.00 0.00 2.71
261 262 1.374252 GTGTTCTCGCGGGTCATGT 60.374 57.895 5.57 0.00 0.00 3.21
262 263 2.100631 GGTGTTCTCGCGGGTCATG 61.101 63.158 5.57 0.00 0.00 3.07
263 264 2.264794 GGTGTTCTCGCGGGTCAT 59.735 61.111 5.57 0.00 0.00 3.06
264 265 3.228017 TGGTGTTCTCGCGGGTCA 61.228 61.111 5.57 3.95 0.00 4.02
265 266 2.737376 GTGGTGTTCTCGCGGGTC 60.737 66.667 5.57 0.82 0.00 4.46
266 267 3.515316 CTGTGGTGTTCTCGCGGGT 62.515 63.158 5.57 0.00 0.00 5.28
267 268 2.738521 CTGTGGTGTTCTCGCGGG 60.739 66.667 6.13 1.01 0.00 6.13
268 269 3.414700 GCTGTGGTGTTCTCGCGG 61.415 66.667 6.13 0.00 0.00 6.46
269 270 1.498865 AAAGCTGTGGTGTTCTCGCG 61.499 55.000 0.00 0.00 0.00 5.87
270 271 0.235926 GAAAGCTGTGGTGTTCTCGC 59.764 55.000 0.00 0.00 0.00 5.03
271 272 0.868406 GGAAAGCTGTGGTGTTCTCG 59.132 55.000 0.00 0.00 0.00 4.04
272 273 2.147150 GAGGAAAGCTGTGGTGTTCTC 58.853 52.381 0.00 0.00 0.00 2.87
273 274 1.771255 AGAGGAAAGCTGTGGTGTTCT 59.229 47.619 0.00 0.00 0.00 3.01
274 275 2.147150 GAGAGGAAAGCTGTGGTGTTC 58.853 52.381 0.00 0.00 0.00 3.18
275 276 1.771255 AGAGAGGAAAGCTGTGGTGTT 59.229 47.619 0.00 0.00 0.00 3.32
276 277 1.428869 AGAGAGGAAAGCTGTGGTGT 58.571 50.000 0.00 0.00 0.00 4.16
277 278 3.736433 CGATAGAGAGGAAAGCTGTGGTG 60.736 52.174 0.00 0.00 39.76 4.17
278 279 2.428890 CGATAGAGAGGAAAGCTGTGGT 59.571 50.000 0.00 0.00 39.76 4.16
279 280 2.801342 GCGATAGAGAGGAAAGCTGTGG 60.801 54.545 0.00 0.00 39.76 4.17
280 281 2.468831 GCGATAGAGAGGAAAGCTGTG 58.531 52.381 0.00 0.00 39.76 3.66
281 282 1.410882 GGCGATAGAGAGGAAAGCTGT 59.589 52.381 0.00 0.00 39.76 4.40
282 283 1.686052 AGGCGATAGAGAGGAAAGCTG 59.314 52.381 0.00 0.00 39.76 4.24
283 284 1.960689 GAGGCGATAGAGAGGAAAGCT 59.039 52.381 0.00 0.00 39.76 3.74
284 285 1.683917 TGAGGCGATAGAGAGGAAAGC 59.316 52.381 0.00 0.00 39.76 3.51
285 286 2.955660 AGTGAGGCGATAGAGAGGAAAG 59.044 50.000 0.00 0.00 39.76 2.62
286 287 3.019799 AGTGAGGCGATAGAGAGGAAA 57.980 47.619 0.00 0.00 39.76 3.13
287 288 2.738587 AGTGAGGCGATAGAGAGGAA 57.261 50.000 0.00 0.00 39.76 3.36
288 289 4.075682 CAATAGTGAGGCGATAGAGAGGA 58.924 47.826 0.00 0.00 39.76 3.71
289 290 3.823873 ACAATAGTGAGGCGATAGAGAGG 59.176 47.826 0.00 0.00 39.76 3.69
290 291 8.653716 CCACACAATAGTGAGGCGATAGAGAG 62.654 50.000 0.00 0.00 46.87 3.20
291 292 6.949392 CCACACAATAGTGAGGCGATAGAGA 61.949 48.000 0.00 0.00 46.87 3.10
292 293 4.794329 CCACACAATAGTGAGGCGATAGAG 60.794 50.000 0.00 0.00 46.87 2.43
293 294 3.068165 CCACACAATAGTGAGGCGATAGA 59.932 47.826 0.00 0.00 46.87 1.98
294 295 3.384668 CCACACAATAGTGAGGCGATAG 58.615 50.000 0.00 0.00 46.87 2.08
295 296 3.452755 CCACACAATAGTGAGGCGATA 57.547 47.619 0.00 0.00 46.87 2.92
296 297 2.315925 CCACACAATAGTGAGGCGAT 57.684 50.000 0.00 0.00 46.87 4.58
297 298 3.832704 CCACACAATAGTGAGGCGA 57.167 52.632 0.00 0.00 46.87 5.54
304 305 3.070446 TCAAACGGTCTCCACACAATAGT 59.930 43.478 0.00 0.00 0.00 2.12
305 306 3.659786 TCAAACGGTCTCCACACAATAG 58.340 45.455 0.00 0.00 0.00 1.73
306 307 3.755112 TCAAACGGTCTCCACACAATA 57.245 42.857 0.00 0.00 0.00 1.90
307 308 2.631160 TCAAACGGTCTCCACACAAT 57.369 45.000 0.00 0.00 0.00 2.71
308 309 2.217750 CATCAAACGGTCTCCACACAA 58.782 47.619 0.00 0.00 0.00 3.33
309 310 1.542328 CCATCAAACGGTCTCCACACA 60.542 52.381 0.00 0.00 0.00 3.72
310 311 1.156736 CCATCAAACGGTCTCCACAC 58.843 55.000 0.00 0.00 0.00 3.82
311 312 1.052617 TCCATCAAACGGTCTCCACA 58.947 50.000 0.00 0.00 0.00 4.17
312 313 1.270625 TGTCCATCAAACGGTCTCCAC 60.271 52.381 0.00 0.00 0.00 4.02
313 314 1.052617 TGTCCATCAAACGGTCTCCA 58.947 50.000 0.00 0.00 0.00 3.86
314 315 1.270625 TGTGTCCATCAAACGGTCTCC 60.271 52.381 0.00 0.00 0.00 3.71
315 316 2.163818 TGTGTCCATCAAACGGTCTC 57.836 50.000 0.00 0.00 0.00 3.36
316 317 2.699954 GATGTGTCCATCAAACGGTCT 58.300 47.619 0.00 0.00 45.68 3.85
325 326 4.133078 GGGAGAGAATTGATGTGTCCATC 58.867 47.826 0.00 0.00 46.41 3.51
326 327 3.432749 CGGGAGAGAATTGATGTGTCCAT 60.433 47.826 0.00 0.00 0.00 3.41
327 328 2.093500 CGGGAGAGAATTGATGTGTCCA 60.093 50.000 0.00 0.00 0.00 4.02
328 329 2.168521 TCGGGAGAGAATTGATGTGTCC 59.831 50.000 0.00 0.00 0.00 4.02
329 330 3.526931 TCGGGAGAGAATTGATGTGTC 57.473 47.619 0.00 0.00 0.00 3.67
330 331 3.801698 CATCGGGAGAGAATTGATGTGT 58.198 45.455 0.00 0.00 45.48 3.72
331 332 2.547211 GCATCGGGAGAGAATTGATGTG 59.453 50.000 2.89 0.00 45.48 3.21
332 333 2.437281 AGCATCGGGAGAGAATTGATGT 59.563 45.455 2.89 0.00 45.48 3.06
333 334 3.123157 AGCATCGGGAGAGAATTGATG 57.877 47.619 0.00 0.00 45.48 3.07
334 335 3.390639 AGAAGCATCGGGAGAGAATTGAT 59.609 43.478 0.00 0.00 45.48 2.57
335 336 2.768527 AGAAGCATCGGGAGAGAATTGA 59.231 45.455 0.00 0.00 45.48 2.57
336 337 3.129871 GAGAAGCATCGGGAGAGAATTG 58.870 50.000 0.00 0.00 45.48 2.32
337 338 2.223923 CGAGAAGCATCGGGAGAGAATT 60.224 50.000 0.00 0.00 45.48 2.17
338 339 1.339610 CGAGAAGCATCGGGAGAGAAT 59.660 52.381 0.00 0.00 45.48 2.40
339 340 0.741326 CGAGAAGCATCGGGAGAGAA 59.259 55.000 0.00 0.00 45.48 2.87
340 341 2.409399 CGAGAAGCATCGGGAGAGA 58.591 57.895 0.00 0.00 45.48 3.10
362 363 2.863401 GTTGCAACGGGAGAGTTTTT 57.137 45.000 14.90 0.00 30.96 1.94
374 375 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
375 376 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
376 377 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
377 378 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
378 379 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
379 380 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
389 390 5.009310 TCGTTAGGGTACACTAGCACATATG 59.991 44.000 17.83 0.00 0.00 1.78
390 391 5.135383 TCGTTAGGGTACACTAGCACATAT 58.865 41.667 17.83 0.00 0.00 1.78
391 392 4.525996 TCGTTAGGGTACACTAGCACATA 58.474 43.478 17.83 0.00 0.00 2.29
392 393 3.359033 TCGTTAGGGTACACTAGCACAT 58.641 45.455 17.83 0.00 0.00 3.21
393 394 2.794103 TCGTTAGGGTACACTAGCACA 58.206 47.619 17.83 2.16 0.00 4.57
394 395 3.441572 TCTTCGTTAGGGTACACTAGCAC 59.558 47.826 17.83 8.15 0.00 4.40
395 396 3.441572 GTCTTCGTTAGGGTACACTAGCA 59.558 47.826 17.83 3.91 0.00 3.49
396 397 3.441572 TGTCTTCGTTAGGGTACACTAGC 59.558 47.826 8.85 8.85 0.00 3.42
397 398 4.456911 TGTGTCTTCGTTAGGGTACACTAG 59.543 45.833 4.74 0.00 38.38 2.57
400 401 3.648339 TGTGTCTTCGTTAGGGTACAC 57.352 47.619 0.00 0.00 38.13 2.90
409 410 2.738846 CTGCTATGCTTGTGTCTTCGTT 59.261 45.455 0.00 0.00 0.00 3.85
411 412 1.662629 CCTGCTATGCTTGTGTCTTCG 59.337 52.381 0.00 0.00 0.00 3.79
439 440 6.039047 GCTGTAATCAATCAGTCACCAATCAT 59.961 38.462 0.00 0.00 34.57 2.45
440 441 5.355071 GCTGTAATCAATCAGTCACCAATCA 59.645 40.000 0.00 0.00 34.57 2.57
441 442 5.355071 TGCTGTAATCAATCAGTCACCAATC 59.645 40.000 0.00 0.00 34.57 2.67
442 443 5.255687 TGCTGTAATCAATCAGTCACCAAT 58.744 37.500 0.00 0.00 34.57 3.16
444 445 4.256110 CTGCTGTAATCAATCAGTCACCA 58.744 43.478 0.00 0.00 34.57 4.17
446 447 3.686241 TGCTGCTGTAATCAATCAGTCAC 59.314 43.478 0.00 0.00 34.57 3.67
489 490 3.003897 TCGCCGTTTCAACTAAATTTGCT 59.996 39.130 0.00 0.00 0.00 3.91
557 585 8.801882 TTAGGGTACATTACAGATTTTTCCAG 57.198 34.615 0.00 0.00 0.00 3.86
613 644 7.557358 TGCTGCTTTAATCAATCAATTCTAGGA 59.443 33.333 0.00 0.00 0.00 2.94
618 649 5.808540 TGCTGCTGCTTTAATCAATCAATTC 59.191 36.000 17.00 0.00 40.48 2.17
649 680 0.670546 TAGTGTTCCTCGCTTGCTGC 60.671 55.000 0.00 0.00 38.01 5.25
650 681 1.795768 TTAGTGTTCCTCGCTTGCTG 58.204 50.000 0.00 0.00 38.01 4.41
661 692 5.446473 CCATCTCAGCGTCAATTTAGTGTTC 60.446 44.000 0.00 0.00 0.00 3.18
676 708 0.758123 CTTCTCCCTCCCATCTCAGC 59.242 60.000 0.00 0.00 0.00 4.26
839 1320 3.020274 GGAGTAGATCACAGAGTCAGCA 58.980 50.000 0.00 0.00 0.00 4.41
848 1549 3.118000 TCTTCGCTAGGGAGTAGATCACA 60.118 47.826 9.68 0.00 31.63 3.58
907 1612 2.361357 CAGGAGGGGACGACTCGT 60.361 66.667 3.08 3.08 45.10 4.18
944 1654 3.231736 AGGGTCGTGGTCGTGCTT 61.232 61.111 0.00 0.00 38.33 3.91
954 1664 3.940506 CTCGGGGAGTCAGGGTCGT 62.941 68.421 0.00 0.00 0.00 4.34
963 1673 2.203584 TCTAGGTTAGACTCGGGGAGT 58.796 52.381 0.00 0.00 46.42 3.85
1025 1763 2.432874 TCTTTGCGTATTGGGCTAGCTA 59.567 45.455 15.72 0.96 0.00 3.32
1026 1764 1.209504 TCTTTGCGTATTGGGCTAGCT 59.790 47.619 15.72 0.00 0.00 3.32
1027 1765 1.663695 TCTTTGCGTATTGGGCTAGC 58.336 50.000 6.04 6.04 0.00 3.42
1385 2149 3.006756 GCGGCTGCAGTAGAGGTGA 62.007 63.158 16.64 0.00 42.15 4.02
1533 2297 1.399440 CCCTTGATCATGTCTGCAACG 59.601 52.381 0.00 0.00 0.00 4.10
1640 2972 2.743636 TCTCTACTCAAAAGCCCACG 57.256 50.000 0.00 0.00 0.00 4.94
1670 3007 4.643463 TCAATGAAACCGTGCCTAACTAA 58.357 39.130 0.00 0.00 0.00 2.24
1674 3011 5.708230 AGTAATTCAATGAAACCGTGCCTAA 59.292 36.000 0.00 0.00 0.00 2.69
1751 3095 6.963049 AGTAATGAACTAATGACAACCGAC 57.037 37.500 0.00 0.00 36.36 4.79
1752 3096 6.932400 ACAAGTAATGAACTAATGACAACCGA 59.068 34.615 0.00 0.00 37.50 4.69
1753 3097 7.015289 CACAAGTAATGAACTAATGACAACCG 58.985 38.462 0.00 0.00 37.50 4.44
1754 3098 8.094798 TCACAAGTAATGAACTAATGACAACC 57.905 34.615 0.00 0.00 37.50 3.77
1755 3099 9.944663 TTTCACAAGTAATGAACTAATGACAAC 57.055 29.630 0.00 0.00 37.50 3.32
1756 3100 9.944663 GTTTCACAAGTAATGAACTAATGACAA 57.055 29.630 0.00 0.00 37.50 3.18
1757 3101 9.337396 AGTTTCACAAGTAATGAACTAATGACA 57.663 29.630 0.00 0.00 37.50 3.58
1758 3102 9.599322 CAGTTTCACAAGTAATGAACTAATGAC 57.401 33.333 0.00 0.00 37.50 3.06
1759 3103 9.554395 TCAGTTTCACAAGTAATGAACTAATGA 57.446 29.630 0.00 0.00 37.50 2.57
1764 3108 8.686334 ACAATTCAGTTTCACAAGTAATGAACT 58.314 29.630 0.00 0.00 41.49 3.01
1765 3109 8.856490 ACAATTCAGTTTCACAAGTAATGAAC 57.144 30.769 0.00 0.00 35.82 3.18
1824 3185 5.696270 CACACGCATAAATCAGCTAAGGATA 59.304 40.000 0.00 0.00 0.00 2.59
1869 3808 6.601613 TCGGAAACAATATGGCTATTTCAAGT 59.398 34.615 0.00 0.00 32.13 3.16
1966 3920 1.266718 GCTGCGTGTTGAGATTCCAAA 59.733 47.619 0.00 0.00 0.00 3.28
2016 3982 3.719474 CGAAACAAAACAACAAACACGCC 60.719 43.478 0.00 0.00 0.00 5.68
2082 4048 2.747686 ACGAAGTGGCACGGGATT 59.252 55.556 12.71 0.01 42.51 3.01
2108 4074 0.820074 TCCTCTCACTAGGCGCTAGC 60.820 60.000 7.64 4.06 37.57 3.42
2109 4075 1.234821 CTCCTCTCACTAGGCGCTAG 58.765 60.000 7.64 9.78 39.72 3.42
2110 4076 0.179015 CCTCCTCTCACTAGGCGCTA 60.179 60.000 7.64 0.00 36.51 4.26
2111 4077 1.454847 CCTCCTCTCACTAGGCGCT 60.455 63.158 7.64 0.00 36.51 5.92
2112 4078 3.124686 CCTCCTCTCACTAGGCGC 58.875 66.667 0.00 0.00 36.51 6.53
2113 4079 3.124686 GCCTCCTCTCACTAGGCG 58.875 66.667 0.00 0.00 45.82 5.52
2115 4081 2.494530 GGCGCCTCCTCTCACTAGG 61.495 68.421 22.15 0.00 38.06 3.02
2116 4082 2.840066 CGGCGCCTCCTCTCACTAG 61.840 68.421 26.68 0.00 0.00 2.57
2117 4083 2.829003 CGGCGCCTCCTCTCACTA 60.829 66.667 26.68 0.00 0.00 2.74
2118 4084 4.742649 TCGGCGCCTCCTCTCACT 62.743 66.667 26.68 0.00 0.00 3.41
2119 4085 4.200283 CTCGGCGCCTCCTCTCAC 62.200 72.222 26.68 0.00 0.00 3.51
2120 4086 4.426313 TCTCGGCGCCTCCTCTCA 62.426 66.667 26.68 0.00 0.00 3.27
2121 4087 3.591835 CTCTCGGCGCCTCCTCTC 61.592 72.222 26.68 0.00 0.00 3.20
2122 4088 4.116585 TCTCTCGGCGCCTCCTCT 62.117 66.667 26.68 0.00 0.00 3.69
2123 4089 3.894947 GTCTCTCGGCGCCTCCTC 61.895 72.222 26.68 6.17 0.00 3.71
2124 4090 4.742649 TGTCTCTCGGCGCCTCCT 62.743 66.667 26.68 0.00 0.00 3.69
2125 4091 4.200283 CTGTCTCTCGGCGCCTCC 62.200 72.222 26.68 5.91 0.00 4.30
2126 4092 4.200283 CCTGTCTCTCGGCGCCTC 62.200 72.222 26.68 8.15 0.00 4.70
2144 4110 1.216710 GGTGGAGAAGCTCGTCCTG 59.783 63.158 13.95 0.00 33.57 3.86
2146 4112 1.827399 TTGGGTGGAGAAGCTCGTCC 61.827 60.000 7.27 7.27 0.00 4.79
2152 4118 1.671379 GGACGTTGGGTGGAGAAGC 60.671 63.158 0.00 0.00 0.00 3.86
2160 4126 1.003355 CTGAGCATGGACGTTGGGT 60.003 57.895 0.00 0.00 0.00 4.51
2164 4130 1.738099 GACGCTGAGCATGGACGTT 60.738 57.895 4.88 0.00 37.05 3.99
2178 4144 4.072088 CAACGTTCCCAGCGACGC 62.072 66.667 13.03 13.03 42.67 5.19
2253 4219 7.758076 GGCCAACATAACCAAAAGAAATACTAC 59.242 37.037 0.00 0.00 0.00 2.73
2278 4244 3.193903 TGGAATGTCACATGCTTGAATGG 59.806 43.478 6.60 0.00 31.46 3.16
2305 4271 7.318141 CCTAATTAAGAAGTGAACGAGTGGTA 58.682 38.462 0.00 0.00 0.00 3.25
2308 4274 6.395629 TCCCTAATTAAGAAGTGAACGAGTG 58.604 40.000 0.00 0.00 0.00 3.51
2317 4284 7.881751 GGGCGTATTAATCCCTAATTAAGAAGT 59.118 37.037 3.87 0.00 41.83 3.01
2341 4308 3.490348 GGAATAATGTCCATCACAGGGG 58.510 50.000 0.00 0.00 38.85 4.79
2342 4309 3.141398 CGGAATAATGTCCATCACAGGG 58.859 50.000 0.00 0.00 38.85 4.45
2373 4340 5.016831 TCACTGGTGAGAGCTTGAGTTATA 58.983 41.667 0.00 0.00 34.14 0.98
2452 4434 9.080097 ACTATACAGAAGAGAAACACAAGTAGT 57.920 33.333 0.00 0.00 0.00 2.73
2470 4458 6.072098 CGCAGATGAACGTAGTACTATACAG 58.928 44.000 5.75 1.47 45.00 2.74
2475 4463 4.033702 CAGTCGCAGATGAACGTAGTACTA 59.966 45.833 0.00 0.00 39.06 1.82
2479 4467 1.540267 ACAGTCGCAGATGAACGTAGT 59.460 47.619 0.00 0.00 42.43 2.73
2490 4478 1.801178 GGGAAAAGAAGACAGTCGCAG 59.199 52.381 0.00 0.00 0.00 5.18
2493 4481 2.543777 TGGGGAAAAGAAGACAGTCG 57.456 50.000 0.00 0.00 0.00 4.18
2516 4504 5.110598 TGTTCAAACGCAGTACTAGTGAAA 58.889 37.500 5.39 0.00 45.00 2.69
2517 4505 4.684877 TGTTCAAACGCAGTACTAGTGAA 58.315 39.130 5.39 0.00 45.00 3.18
2518 4506 4.310357 TGTTCAAACGCAGTACTAGTGA 57.690 40.909 5.39 0.00 45.00 3.41
2519 4507 5.591643 ATTGTTCAAACGCAGTACTAGTG 57.408 39.130 5.39 0.00 45.00 2.74
2520 4508 5.756347 TCAATTGTTCAAACGCAGTACTAGT 59.244 36.000 5.13 0.00 45.00 2.57
2521 4509 6.223138 TCAATTGTTCAAACGCAGTACTAG 57.777 37.500 5.13 0.00 45.00 2.57
2522 4510 6.606234 TTCAATTGTTCAAACGCAGTACTA 57.394 33.333 5.13 0.00 45.00 1.82
2529 4524 7.169140 AGACCTTTTATTCAATTGTTCAAACGC 59.831 33.333 5.13 0.00 0.00 4.84
2544 4539 5.196695 GCCAATGGAGAGAGACCTTTTATT 58.803 41.667 2.05 0.00 0.00 1.40
2545 4540 4.228210 TGCCAATGGAGAGAGACCTTTTAT 59.772 41.667 2.05 0.00 0.00 1.40
2546 4541 3.587061 TGCCAATGGAGAGAGACCTTTTA 59.413 43.478 2.05 0.00 0.00 1.52
2547 4542 2.376518 TGCCAATGGAGAGAGACCTTTT 59.623 45.455 2.05 0.00 0.00 2.27
2548 4543 1.988107 TGCCAATGGAGAGAGACCTTT 59.012 47.619 2.05 0.00 0.00 3.11
2549 4544 1.661463 TGCCAATGGAGAGAGACCTT 58.339 50.000 2.05 0.00 0.00 3.50
2550 4545 1.280421 GTTGCCAATGGAGAGAGACCT 59.720 52.381 2.05 0.00 0.00 3.85
2578 4573 4.211374 GTGCTTCAGTACAACTTCGTCAAT 59.789 41.667 0.00 0.00 0.00 2.57
2582 4577 3.181479 TGAGTGCTTCAGTACAACTTCGT 60.181 43.478 0.00 0.00 32.87 3.85
2623 4618 9.213799 GGAAATAATTAAGCAACCAAAATGACA 57.786 29.630 0.00 0.00 0.00 3.58
2630 4625 6.207810 ACGACAGGAAATAATTAAGCAACCAA 59.792 34.615 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.