Multiple sequence alignment - TraesCS2D01G419300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G419300 chr2D 100.000 3389 0 0 1 3389 533250594 533253982 0.000000e+00 6259.0
1 TraesCS2D01G419300 chr2D 91.998 1662 97 15 1045 2699 533165206 533166838 0.000000e+00 2300.0
2 TraesCS2D01G419300 chr2D 86.379 1505 152 19 1046 2546 533658232 533659687 0.000000e+00 1594.0
3 TraesCS2D01G419300 chr2D 80.471 1613 261 33 1116 2709 533668452 533670029 0.000000e+00 1184.0
4 TraesCS2D01G419300 chr2D 79.597 1637 255 54 967 2567 534135006 534136599 0.000000e+00 1099.0
5 TraesCS2D01G419300 chr2D 92.618 718 39 10 1 712 133586149 133585440 0.000000e+00 1020.0
6 TraesCS2D01G419300 chr2D 92.531 723 36 12 1 715 353054470 353053758 0.000000e+00 1020.0
7 TraesCS2D01G419300 chr2D 82.883 222 6 8 834 1055 533164991 533165180 1.620000e-38 171.0
8 TraesCS2D01G419300 chr2A 92.117 1941 130 16 1040 2972 677546058 677547983 0.000000e+00 2715.0
9 TraesCS2D01G419300 chr2A 86.432 199 25 2 3051 3248 677548160 677548357 2.050000e-52 217.0
10 TraesCS2D01G419300 chr2A 84.651 215 6 9 834 1048 677545845 677546032 4.460000e-44 189.0
11 TraesCS2D01G419300 chr2B 90.097 1747 107 24 980 2699 632988038 632989745 0.000000e+00 2207.0
12 TraesCS2D01G419300 chr2B 85.412 1467 174 17 1093 2546 633575329 633576768 0.000000e+00 1487.0
13 TraesCS2D01G419300 chr2B 78.661 1837 311 54 1116 2923 633584798 633586582 0.000000e+00 1146.0
14 TraesCS2D01G419300 chr2B 81.988 805 118 10 1676 2480 633254582 633255359 0.000000e+00 658.0
15 TraesCS2D01G419300 chr2B 86.005 443 50 10 1040 1474 633240691 633241129 6.620000e-127 464.0
16 TraesCS2D01G419300 chr2B 94.203 69 4 0 1040 1108 633575257 633575325 4.620000e-19 106.0
17 TraesCS2D01G419300 chr2B 96.000 50 2 0 834 883 632987939 632987988 7.790000e-12 82.4
18 TraesCS2D01G419300 chrUn 85.288 1339 168 13 1213 2546 26138820 26140134 0.000000e+00 1354.0
19 TraesCS2D01G419300 chrUn 92.126 127 9 1 1040 1165 26119982 26120108 9.660000e-41 178.0
20 TraesCS2D01G419300 chr1D 93.065 721 36 10 1 713 139798816 139798102 0.000000e+00 1042.0
21 TraesCS2D01G419300 chr1D 92.917 720 37 10 1 712 199796746 199797459 0.000000e+00 1035.0
22 TraesCS2D01G419300 chr1D 92.768 719 38 10 1 712 165101340 165100629 0.000000e+00 1027.0
23 TraesCS2D01G419300 chr1D 92.393 723 39 12 1 715 144768468 144767754 0.000000e+00 1016.0
24 TraesCS2D01G419300 chr3D 92.936 722 32 14 1 712 176846336 176845624 0.000000e+00 1033.0
25 TraesCS2D01G419300 chr7D 92.680 724 37 11 1 716 301577133 301576418 0.000000e+00 1029.0
26 TraesCS2D01G419300 chr7D 75.917 1308 220 62 963 2241 78799551 78798310 1.750000e-162 582.0
27 TraesCS2D01G419300 chr7D 77.778 135 21 5 3105 3230 78795388 78795254 1.300000e-09 75.0
28 TraesCS2D01G419300 chr4D 92.629 719 39 10 1 712 316646627 316645916 0.000000e+00 1022.0
29 TraesCS2D01G419300 chr7A 76.101 908 152 42 1514 2395 81916823 81915955 6.770000e-112 414.0
30 TraesCS2D01G419300 chr7A 94.872 78 4 0 713 790 620401959 620401882 4.590000e-24 122.0
31 TraesCS2D01G419300 chr7A 91.463 82 5 2 713 793 506277899 506277979 9.940000e-21 111.0
32 TraesCS2D01G419300 chr5B 95.000 80 4 0 713 792 520850690 520850611 3.550000e-25 126.0
33 TraesCS2D01G419300 chr5B 94.667 75 4 0 713 787 253186511 253186437 2.140000e-22 117.0
34 TraesCS2D01G419300 chr7B 92.208 77 6 0 713 789 667282701 667282625 3.580000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G419300 chr2D 533250594 533253982 3388 False 6259.000000 6259 100.000000 1 3389 1 chr2D.!!$F1 3388
1 TraesCS2D01G419300 chr2D 533658232 533659687 1455 False 1594.000000 1594 86.379000 1046 2546 1 chr2D.!!$F2 1500
2 TraesCS2D01G419300 chr2D 533164991 533166838 1847 False 1235.500000 2300 87.440500 834 2699 2 chr2D.!!$F5 1865
3 TraesCS2D01G419300 chr2D 533668452 533670029 1577 False 1184.000000 1184 80.471000 1116 2709 1 chr2D.!!$F3 1593
4 TraesCS2D01G419300 chr2D 534135006 534136599 1593 False 1099.000000 1099 79.597000 967 2567 1 chr2D.!!$F4 1600
5 TraesCS2D01G419300 chr2D 133585440 133586149 709 True 1020.000000 1020 92.618000 1 712 1 chr2D.!!$R1 711
6 TraesCS2D01G419300 chr2D 353053758 353054470 712 True 1020.000000 1020 92.531000 1 715 1 chr2D.!!$R2 714
7 TraesCS2D01G419300 chr2A 677545845 677548357 2512 False 1040.333333 2715 87.733333 834 3248 3 chr2A.!!$F1 2414
8 TraesCS2D01G419300 chr2B 633584798 633586582 1784 False 1146.000000 1146 78.661000 1116 2923 1 chr2B.!!$F3 1807
9 TraesCS2D01G419300 chr2B 632987939 632989745 1806 False 1144.700000 2207 93.048500 834 2699 2 chr2B.!!$F4 1865
10 TraesCS2D01G419300 chr2B 633575257 633576768 1511 False 796.500000 1487 89.807500 1040 2546 2 chr2B.!!$F5 1506
11 TraesCS2D01G419300 chr2B 633254582 633255359 777 False 658.000000 658 81.988000 1676 2480 1 chr2B.!!$F2 804
12 TraesCS2D01G419300 chrUn 26138820 26140134 1314 False 1354.000000 1354 85.288000 1213 2546 1 chrUn.!!$F2 1333
13 TraesCS2D01G419300 chr1D 139798102 139798816 714 True 1042.000000 1042 93.065000 1 713 1 chr1D.!!$R1 712
14 TraesCS2D01G419300 chr1D 199796746 199797459 713 False 1035.000000 1035 92.917000 1 712 1 chr1D.!!$F1 711
15 TraesCS2D01G419300 chr1D 165100629 165101340 711 True 1027.000000 1027 92.768000 1 712 1 chr1D.!!$R3 711
16 TraesCS2D01G419300 chr1D 144767754 144768468 714 True 1016.000000 1016 92.393000 1 715 1 chr1D.!!$R2 714
17 TraesCS2D01G419300 chr3D 176845624 176846336 712 True 1033.000000 1033 92.936000 1 712 1 chr3D.!!$R1 711
18 TraesCS2D01G419300 chr7D 301576418 301577133 715 True 1029.000000 1029 92.680000 1 716 1 chr7D.!!$R1 715
19 TraesCS2D01G419300 chr7D 78795254 78799551 4297 True 328.500000 582 76.847500 963 3230 2 chr7D.!!$R2 2267
20 TraesCS2D01G419300 chr4D 316645916 316646627 711 True 1022.000000 1022 92.629000 1 712 1 chr4D.!!$R1 711
21 TraesCS2D01G419300 chr7A 81915955 81916823 868 True 414.000000 414 76.101000 1514 2395 1 chr7A.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 884 0.108992 TTCGCCGCTAATCTCGTTGT 60.109 50.0 0.00 0.0 0.0 3.32 F
2055 2223 0.524392 CGCTAGCTCCTGACGACAAG 60.524 60.0 13.93 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2390 0.095935 CGCAGTCTGGATGAAAAGCG 59.904 55.0 1.14 0.00 36.01 4.68 R
3265 5916 0.109597 GTGCAGTGCAATGGCTACAC 60.110 55.0 21.67 11.24 41.47 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.014044 CATCAACCGCGTGTGTAGCT 61.014 55.000 4.92 0.00 0.00 3.32
158 160 5.955488 TCTTGATCACTTCTAACTTCTCGG 58.045 41.667 0.00 0.00 0.00 4.63
241 245 2.113433 GCTGCAGCTCCACCTCATG 61.113 63.158 31.33 0.00 38.21 3.07
261 268 4.845530 TGACCCTATCCTACCCATAAGT 57.154 45.455 0.00 0.00 0.00 2.24
354 362 1.206132 CAGGTGCCGTTGATACCAGTA 59.794 52.381 0.00 0.00 36.94 2.74
398 407 1.507174 GGAGTTCGACGAGGACCTG 59.493 63.158 0.00 0.00 0.00 4.00
577 589 2.688507 AGTGTGAAGTGGCGATTGTAG 58.311 47.619 0.00 0.00 0.00 2.74
618 635 6.662865 TTGTTCATTACATGGGATTGTGTT 57.337 33.333 0.00 0.00 36.44 3.32
645 663 1.247567 CCCTCTTGCGACAAAACCAT 58.752 50.000 0.00 0.00 0.00 3.55
716 734 2.613474 GCATCGTGGGTGTTACAGGTAA 60.613 50.000 0.00 0.00 0.00 2.85
717 735 3.869065 CATCGTGGGTGTTACAGGTAAT 58.131 45.455 0.00 0.00 0.00 1.89
718 736 3.322211 TCGTGGGTGTTACAGGTAATG 57.678 47.619 0.00 0.00 0.00 1.90
719 737 2.633967 TCGTGGGTGTTACAGGTAATGT 59.366 45.455 0.00 0.00 46.45 2.71
720 738 2.739913 CGTGGGTGTTACAGGTAATGTG 59.260 50.000 0.00 0.00 43.80 3.21
721 739 3.746940 GTGGGTGTTACAGGTAATGTGT 58.253 45.455 0.00 0.00 43.80 3.72
722 740 3.749609 GTGGGTGTTACAGGTAATGTGTC 59.250 47.826 0.00 0.00 43.80 3.67
723 741 3.244630 TGGGTGTTACAGGTAATGTGTCC 60.245 47.826 0.00 0.00 43.80 4.02
724 742 3.244630 GGGTGTTACAGGTAATGTGTCCA 60.245 47.826 0.00 0.00 43.80 4.02
725 743 3.749609 GGTGTTACAGGTAATGTGTCCAC 59.250 47.826 0.00 0.00 43.80 4.02
726 744 3.430895 GTGTTACAGGTAATGTGTCCACG 59.569 47.826 0.00 0.00 43.80 4.94
727 745 2.997986 GTTACAGGTAATGTGTCCACGG 59.002 50.000 0.00 0.00 43.80 4.94
728 746 1.344065 ACAGGTAATGTGTCCACGGA 58.656 50.000 0.00 0.00 41.91 4.69
729 747 1.001633 ACAGGTAATGTGTCCACGGAC 59.998 52.381 9.38 9.38 41.91 4.79
737 755 3.727146 GTCCACGGACGTTTGCTT 58.273 55.556 0.00 0.00 35.30 3.91
738 756 1.278637 GTCCACGGACGTTTGCTTG 59.721 57.895 0.00 0.00 35.30 4.01
739 757 1.890041 TCCACGGACGTTTGCTTGG 60.890 57.895 0.00 0.00 0.00 3.61
740 758 2.637025 CACGGACGTTTGCTTGGG 59.363 61.111 0.00 0.00 0.00 4.12
741 759 2.184167 CACGGACGTTTGCTTGGGT 61.184 57.895 0.00 0.00 0.00 4.51
742 760 2.184167 ACGGACGTTTGCTTGGGTG 61.184 57.895 0.00 0.00 0.00 4.61
743 761 2.335011 GGACGTTTGCTTGGGTGC 59.665 61.111 0.00 0.00 0.00 5.01
744 762 2.051345 GACGTTTGCTTGGGTGCG 60.051 61.111 0.00 0.00 35.36 5.34
745 763 4.264638 ACGTTTGCTTGGGTGCGC 62.265 61.111 0.00 0.00 35.36 6.09
746 764 4.999939 CGTTTGCTTGGGTGCGCC 63.000 66.667 8.12 8.12 35.36 6.53
747 765 3.605664 GTTTGCTTGGGTGCGCCT 61.606 61.111 17.49 0.00 35.36 5.52
748 766 2.114199 TTTGCTTGGGTGCGCCTA 59.886 55.556 17.49 7.43 35.36 3.93
749 767 1.971167 TTTGCTTGGGTGCGCCTAG 60.971 57.895 17.49 14.67 35.36 3.02
750 768 2.404566 TTTGCTTGGGTGCGCCTAGA 62.405 55.000 17.49 1.36 35.36 2.43
751 769 2.046314 GCTTGGGTGCGCCTAGAA 60.046 61.111 17.49 6.04 34.45 2.10
752 770 1.674322 GCTTGGGTGCGCCTAGAAA 60.674 57.895 17.49 5.27 34.45 2.52
753 771 1.241315 GCTTGGGTGCGCCTAGAAAA 61.241 55.000 17.49 2.81 34.45 2.29
754 772 0.804989 CTTGGGTGCGCCTAGAAAAG 59.195 55.000 17.49 8.73 34.45 2.27
755 773 0.398696 TTGGGTGCGCCTAGAAAAGA 59.601 50.000 17.49 0.00 34.45 2.52
756 774 0.618458 TGGGTGCGCCTAGAAAAGAT 59.382 50.000 17.49 0.00 34.45 2.40
757 775 1.834896 TGGGTGCGCCTAGAAAAGATA 59.165 47.619 17.49 0.00 34.45 1.98
758 776 2.237643 TGGGTGCGCCTAGAAAAGATAA 59.762 45.455 17.49 0.00 34.45 1.75
759 777 3.118038 TGGGTGCGCCTAGAAAAGATAAT 60.118 43.478 17.49 0.00 34.45 1.28
760 778 3.251004 GGGTGCGCCTAGAAAAGATAATG 59.749 47.826 17.49 0.00 34.45 1.90
761 779 3.877508 GGTGCGCCTAGAAAAGATAATGT 59.122 43.478 9.68 0.00 0.00 2.71
762 780 4.335594 GGTGCGCCTAGAAAAGATAATGTT 59.664 41.667 9.68 0.00 0.00 2.71
763 781 5.266242 GTGCGCCTAGAAAAGATAATGTTG 58.734 41.667 4.18 0.00 0.00 3.33
764 782 4.335315 TGCGCCTAGAAAAGATAATGTTGG 59.665 41.667 4.18 0.00 0.00 3.77
765 783 4.574828 GCGCCTAGAAAAGATAATGTTGGA 59.425 41.667 0.00 0.00 0.00 3.53
766 784 5.239525 GCGCCTAGAAAAGATAATGTTGGAT 59.760 40.000 0.00 0.00 0.00 3.41
767 785 6.238759 GCGCCTAGAAAAGATAATGTTGGATT 60.239 38.462 0.00 0.00 0.00 3.01
768 786 7.041372 GCGCCTAGAAAAGATAATGTTGGATTA 60.041 37.037 0.00 0.00 0.00 1.75
769 787 9.003658 CGCCTAGAAAAGATAATGTTGGATTAT 57.996 33.333 0.00 0.00 0.00 1.28
805 823 9.724839 GTAGAGATAGAGAAATATATTCACCGC 57.275 37.037 0.00 0.00 0.00 5.68
806 824 8.354711 AGAGATAGAGAAATATATTCACCGCA 57.645 34.615 0.00 0.00 0.00 5.69
807 825 8.976353 AGAGATAGAGAAATATATTCACCGCAT 58.024 33.333 0.00 0.00 0.00 4.73
808 826 9.593134 GAGATAGAGAAATATATTCACCGCATT 57.407 33.333 0.00 0.00 0.00 3.56
809 827 9.950496 AGATAGAGAAATATATTCACCGCATTT 57.050 29.630 0.00 0.00 0.00 2.32
811 829 7.440523 AGAGAAATATATTCACCGCATTTCC 57.559 36.000 0.00 0.00 36.64 3.13
812 830 6.998074 AGAGAAATATATTCACCGCATTTCCA 59.002 34.615 0.00 0.00 36.64 3.53
813 831 7.502226 AGAGAAATATATTCACCGCATTTCCAA 59.498 33.333 0.00 0.00 36.64 3.53
814 832 8.006298 AGAAATATATTCACCGCATTTCCAAA 57.994 30.769 0.00 0.00 36.64 3.28
815 833 8.474025 AGAAATATATTCACCGCATTTCCAAAA 58.526 29.630 0.00 0.00 36.64 2.44
816 834 9.092876 GAAATATATTCACCGCATTTCCAAAAA 57.907 29.630 0.00 0.00 32.13 1.94
817 835 9.612066 AAATATATTCACCGCATTTCCAAAAAT 57.388 25.926 0.00 0.00 35.43 1.82
818 836 9.612066 AATATATTCACCGCATTTCCAAAAATT 57.388 25.926 0.00 0.00 32.69 1.82
821 839 7.920160 ATTCACCGCATTTCCAAAAATTAAT 57.080 28.000 0.00 0.00 32.69 1.40
823 841 8.833231 TTCACCGCATTTCCAAAAATTAATAA 57.167 26.923 0.00 0.00 32.69 1.40
824 842 9.442047 TTCACCGCATTTCCAAAAATTAATAAT 57.558 25.926 0.00 0.00 32.69 1.28
827 845 9.877178 ACCGCATTTCCAAAAATTAATAATACA 57.123 25.926 0.00 0.00 32.69 2.29
866 884 0.108992 TTCGCCGCTAATCTCGTTGT 60.109 50.000 0.00 0.00 0.00 3.32
884 902 1.077068 TTGGCGAACATCATCCCCC 60.077 57.895 0.00 0.00 0.00 5.40
886 904 1.151450 GGCGAACATCATCCCCCAT 59.849 57.895 0.00 0.00 0.00 4.00
887 905 0.890996 GGCGAACATCATCCCCCATC 60.891 60.000 0.00 0.00 0.00 3.51
888 906 1.230635 GCGAACATCATCCCCCATCG 61.231 60.000 0.00 0.00 0.00 3.84
889 907 1.230635 CGAACATCATCCCCCATCGC 61.231 60.000 0.00 0.00 0.00 4.58
890 908 0.890996 GAACATCATCCCCCATCGCC 60.891 60.000 0.00 0.00 0.00 5.54
891 909 2.359107 CATCATCCCCCATCGCCG 60.359 66.667 0.00 0.00 0.00 6.46
892 910 2.526624 ATCATCCCCCATCGCCGA 60.527 61.111 0.00 0.00 0.00 5.54
893 911 1.920325 ATCATCCCCCATCGCCGAT 60.920 57.895 0.00 0.00 0.00 4.18
894 912 1.903877 ATCATCCCCCATCGCCGATC 61.904 60.000 0.00 0.00 0.00 3.69
895 913 2.203847 ATCCCCCATCGCCGATCT 60.204 61.111 0.00 0.00 0.00 2.75
896 914 2.587247 ATCCCCCATCGCCGATCTG 61.587 63.158 0.00 0.00 0.00 2.90
909 927 3.601586 CGCCGATCTGTAAAAATGCTACG 60.602 47.826 0.00 0.00 0.00 3.51
910 928 3.303132 GCCGATCTGTAAAAATGCTACGG 60.303 47.826 0.00 0.00 39.64 4.02
911 929 3.869246 CCGATCTGTAAAAATGCTACGGT 59.131 43.478 0.00 0.00 33.44 4.83
912 930 4.331717 CCGATCTGTAAAAATGCTACGGTT 59.668 41.667 0.00 0.00 33.44 4.44
913 931 5.521010 CCGATCTGTAAAAATGCTACGGTTA 59.479 40.000 0.00 0.00 33.44 2.85
914 932 6.036300 CCGATCTGTAAAAATGCTACGGTTAA 59.964 38.462 0.00 0.00 33.44 2.01
915 933 7.254658 CCGATCTGTAAAAATGCTACGGTTAAT 60.255 37.037 0.00 0.00 33.44 1.40
916 934 8.757789 CGATCTGTAAAAATGCTACGGTTAATA 58.242 33.333 0.00 0.00 0.00 0.98
949 967 3.620785 GATCCTCCATCGCCGCCT 61.621 66.667 0.00 0.00 0.00 5.52
950 968 2.203640 ATCCTCCATCGCCGCCTA 60.204 61.111 0.00 0.00 0.00 3.93
951 969 2.493907 GATCCTCCATCGCCGCCTAC 62.494 65.000 0.00 0.00 0.00 3.18
952 970 4.647615 CCTCCATCGCCGCCTACG 62.648 72.222 0.00 0.00 39.67 3.51
1112 1196 6.280643 TGTACAGATTGATTTATCCTGACCG 58.719 40.000 0.00 0.00 0.00 4.79
1242 1385 2.461300 TCCTGACGGAGGATCTCATT 57.539 50.000 1.40 0.00 46.96 2.57
1702 1861 0.813821 GGCTTTTGATCCAGCAGTCC 59.186 55.000 10.00 0.00 37.81 3.85
1854 2014 1.447140 CGCTGGCCTTACAAGCGTA 60.447 57.895 22.47 0.00 43.00 4.42
1860 2020 3.267483 TGGCCTTACAAGCGTATTCTTC 58.733 45.455 3.32 0.00 0.00 2.87
1963 2130 2.159085 GGGAAGGTGTGGAAGACTATCG 60.159 54.545 0.00 0.00 0.00 2.92
1993 2160 3.436243 TCAGGTGGTTTGAGTTTTGGTT 58.564 40.909 0.00 0.00 0.00 3.67
2011 2178 1.461127 GTTTGATCGGAGTGTCACAGC 59.539 52.381 5.62 0.00 0.00 4.40
2053 2221 2.407428 CCGCTAGCTCCTGACGACA 61.407 63.158 13.93 0.00 0.00 4.35
2054 2222 1.506718 CGCTAGCTCCTGACGACAA 59.493 57.895 13.93 0.00 0.00 3.18
2055 2223 0.524392 CGCTAGCTCCTGACGACAAG 60.524 60.000 13.93 0.00 0.00 3.16
2086 2254 5.301555 AGAAGAAGAGGAAGAAGAAAACGG 58.698 41.667 0.00 0.00 0.00 4.44
2205 2390 3.408853 GGGGAGTACAGGGTGGCC 61.409 72.222 0.00 0.00 0.00 5.36
2263 2506 3.322369 TCGTTTGATGCTGATACGTTGT 58.678 40.909 0.00 0.00 34.15 3.32
2380 4821 3.873952 GGACTCATTTGCAGGTGTAGATC 59.126 47.826 0.00 0.00 0.00 2.75
2400 4852 2.823747 TCGACAGTAGTGTTACCTGCAT 59.176 45.455 4.32 0.00 36.88 3.96
2427 4879 2.094854 GCTTGTGCTTCCTCCAAGAATG 60.095 50.000 0.00 0.00 38.23 2.67
2449 4901 2.634940 TGCTCTTCTTCTGTAGGTGCTT 59.365 45.455 0.00 0.00 0.00 3.91
2455 4907 7.159322 TCTTCTTCTGTAGGTGCTTTACTAG 57.841 40.000 0.00 0.00 0.00 2.57
2470 4925 8.770828 GTGCTTTACTAGTTTTGTCTGTTGATA 58.229 33.333 0.00 0.00 0.00 2.15
2505 4970 7.545265 TGCTTAAATTATGTCATTCAACTTGCC 59.455 33.333 0.00 0.00 0.00 4.52
2509 4974 1.234821 TGTCATTCAACTTGCCGGTC 58.765 50.000 1.90 0.00 0.00 4.79
2523 4988 2.753029 GGTCCTTGTGCTCCTGCT 59.247 61.111 0.00 0.00 40.48 4.24
2524 4989 1.888436 CGGTCCTTGTGCTCCTGCTA 61.888 60.000 0.00 0.00 40.48 3.49
2630 5099 4.085357 TCTTGTGTGTCCAGCTATTGTT 57.915 40.909 0.00 0.00 0.00 2.83
2634 5103 1.621317 TGTGTCCAGCTATTGTTCCGA 59.379 47.619 0.00 0.00 0.00 4.55
2638 5107 5.057149 GTGTCCAGCTATTGTTCCGAATAT 58.943 41.667 0.00 0.00 0.00 1.28
2721 5199 5.948992 GGATTATGTGTCCTAAATCCTGC 57.051 43.478 5.83 0.00 42.66 4.85
2728 5208 6.614694 TGTGTCCTAAATCCTGCTTACTAA 57.385 37.500 0.00 0.00 0.00 2.24
2729 5209 7.195374 TGTGTCCTAAATCCTGCTTACTAAT 57.805 36.000 0.00 0.00 0.00 1.73
2837 5322 1.264141 GATTTCGGCGATGCATTGCG 61.264 55.000 28.41 23.15 38.09 4.85
2890 5383 3.015327 AGCCAATGAATTCAGTCTGCTC 58.985 45.455 18.64 9.14 27.28 4.26
2909 5402 4.202315 TGCTCCAGTTTAACTTCTGCTACA 60.202 41.667 0.00 0.00 0.00 2.74
2927 5426 4.093850 GCTACATAACCTGTTAACCCAACG 59.906 45.833 2.48 0.00 40.26 4.10
2933 5432 4.579647 ACCTGTTAACCCAACGGAATAT 57.420 40.909 2.48 0.00 45.05 1.28
2942 5441 3.960102 ACCCAACGGAATATTTGCATCAT 59.040 39.130 0.00 0.00 0.00 2.45
2945 5444 4.746115 CCAACGGAATATTTGCATCATTGG 59.254 41.667 0.00 0.00 0.00 3.16
2946 5445 5.350633 CAACGGAATATTTGCATCATTGGT 58.649 37.500 0.00 0.00 0.00 3.67
2956 5455 6.847956 TTTGCATCATTGGTGAAAGAAAAG 57.152 33.333 0.00 0.00 38.01 2.27
2972 5471 7.502226 TGAAAGAAAAGACCAGCTTTCATAAGA 59.498 33.333 11.50 0.00 46.47 2.10
2975 5616 7.227156 AGAAAAGACCAGCTTTCATAAGAAGA 58.773 34.615 0.00 0.00 45.85 2.87
2995 5637 5.702349 AGATTTCTTGCTGGTGAGAAAAG 57.298 39.130 3.05 0.00 42.99 2.27
3001 5643 2.224606 TGCTGGTGAGAAAAGCAAGAG 58.775 47.619 0.00 0.00 43.65 2.85
3004 5646 3.119919 GCTGGTGAGAAAAGCAAGAGATG 60.120 47.826 0.00 0.00 36.91 2.90
3005 5647 4.070716 CTGGTGAGAAAAGCAAGAGATGT 58.929 43.478 0.00 0.00 0.00 3.06
3006 5648 4.067896 TGGTGAGAAAAGCAAGAGATGTC 58.932 43.478 0.00 0.00 0.00 3.06
3007 5649 3.438434 GGTGAGAAAAGCAAGAGATGTCC 59.562 47.826 0.00 0.00 0.00 4.02
3008 5650 4.067896 GTGAGAAAAGCAAGAGATGTCCA 58.932 43.478 0.00 0.00 0.00 4.02
3009 5651 4.699257 GTGAGAAAAGCAAGAGATGTCCAT 59.301 41.667 0.00 0.00 0.00 3.41
3010 5652 5.182760 GTGAGAAAAGCAAGAGATGTCCATT 59.817 40.000 0.00 0.00 0.00 3.16
3011 5653 5.771666 TGAGAAAAGCAAGAGATGTCCATTT 59.228 36.000 0.00 0.00 0.00 2.32
3012 5654 6.072286 TGAGAAAAGCAAGAGATGTCCATTTC 60.072 38.462 0.00 0.00 0.00 2.17
3013 5655 6.008960 AGAAAAGCAAGAGATGTCCATTTCT 58.991 36.000 0.00 0.00 34.19 2.52
3014 5656 7.170965 AGAAAAGCAAGAGATGTCCATTTCTA 58.829 34.615 1.22 0.00 34.03 2.10
3015 5657 6.749923 AAAGCAAGAGATGTCCATTTCTAC 57.250 37.500 1.22 0.00 31.88 2.59
3016 5658 4.775236 AGCAAGAGATGTCCATTTCTACC 58.225 43.478 1.22 0.00 31.88 3.18
3017 5659 3.879892 GCAAGAGATGTCCATTTCTACCC 59.120 47.826 1.22 0.00 31.88 3.69
3018 5660 4.384647 GCAAGAGATGTCCATTTCTACCCT 60.385 45.833 1.22 0.00 31.88 4.34
3019 5661 5.121811 CAAGAGATGTCCATTTCTACCCTG 58.878 45.833 1.22 0.00 31.88 4.45
3020 5662 4.366267 AGAGATGTCCATTTCTACCCTGT 58.634 43.478 0.00 0.00 31.39 4.00
3021 5663 4.163078 AGAGATGTCCATTTCTACCCTGTG 59.837 45.833 0.00 0.00 31.39 3.66
3022 5664 3.846588 AGATGTCCATTTCTACCCTGTGT 59.153 43.478 0.00 0.00 0.00 3.72
3023 5665 4.289672 AGATGTCCATTTCTACCCTGTGTT 59.710 41.667 0.00 0.00 0.00 3.32
3024 5666 4.015872 TGTCCATTTCTACCCTGTGTTC 57.984 45.455 0.00 0.00 0.00 3.18
3025 5667 3.244770 TGTCCATTTCTACCCTGTGTTCC 60.245 47.826 0.00 0.00 0.00 3.62
3026 5668 3.009143 GTCCATTTCTACCCTGTGTTCCT 59.991 47.826 0.00 0.00 0.00 3.36
3027 5669 3.263425 TCCATTTCTACCCTGTGTTCCTC 59.737 47.826 0.00 0.00 0.00 3.71
3028 5670 3.264450 CCATTTCTACCCTGTGTTCCTCT 59.736 47.826 0.00 0.00 0.00 3.69
3029 5671 4.256920 CATTTCTACCCTGTGTTCCTCTG 58.743 47.826 0.00 0.00 0.00 3.35
3030 5672 2.696526 TCTACCCTGTGTTCCTCTGT 57.303 50.000 0.00 0.00 0.00 3.41
3031 5673 2.972348 TCTACCCTGTGTTCCTCTGTT 58.028 47.619 0.00 0.00 0.00 3.16
3032 5674 2.897969 TCTACCCTGTGTTCCTCTGTTC 59.102 50.000 0.00 0.00 0.00 3.18
3033 5675 1.807814 ACCCTGTGTTCCTCTGTTCT 58.192 50.000 0.00 0.00 0.00 3.01
3034 5676 1.417890 ACCCTGTGTTCCTCTGTTCTG 59.582 52.381 0.00 0.00 0.00 3.02
3035 5677 1.271054 CCCTGTGTTCCTCTGTTCTGG 60.271 57.143 0.00 0.00 0.00 3.86
3036 5678 1.271054 CCTGTGTTCCTCTGTTCTGGG 60.271 57.143 0.00 0.00 0.00 4.45
3037 5679 1.694150 CTGTGTTCCTCTGTTCTGGGA 59.306 52.381 0.00 0.00 0.00 4.37
3038 5680 1.694150 TGTGTTCCTCTGTTCTGGGAG 59.306 52.381 0.00 0.00 0.00 4.30
3040 5682 0.035915 GTTCCTCTGTTCTGGGAGGC 60.036 60.000 4.31 0.00 46.22 4.70
3041 5683 0.473694 TTCCTCTGTTCTGGGAGGCA 60.474 55.000 4.31 0.00 46.22 4.75
3042 5684 0.252881 TCCTCTGTTCTGGGAGGCAT 60.253 55.000 4.31 0.00 46.22 4.40
3043 5685 0.622665 CCTCTGTTCTGGGAGGCATT 59.377 55.000 0.00 0.00 41.92 3.56
3044 5686 1.839994 CCTCTGTTCTGGGAGGCATTA 59.160 52.381 0.00 0.00 41.92 1.90
3045 5687 2.239654 CCTCTGTTCTGGGAGGCATTAA 59.760 50.000 0.00 0.00 41.92 1.40
3046 5688 3.539604 CTCTGTTCTGGGAGGCATTAAG 58.460 50.000 0.00 0.00 0.00 1.85
3047 5689 2.019984 CTGTTCTGGGAGGCATTAAGC 58.980 52.381 0.00 0.00 44.65 3.09
3057 5699 1.005215 AGGCATTAAGCAGTGCTTCCT 59.995 47.619 32.77 27.49 46.77 3.36
3058 5700 1.403323 GGCATTAAGCAGTGCTTCCTC 59.597 52.381 32.77 19.18 46.77 3.71
3061 5703 2.185004 TTAAGCAGTGCTTCCTCCAC 57.815 50.000 32.77 0.00 46.77 4.02
3084 5726 6.001460 ACGTTTGTGATTCCTCCAAAGATTA 58.999 36.000 0.00 0.00 0.00 1.75
3090 5732 4.723789 TGATTCCTCCAAAGATTAGGCTCT 59.276 41.667 0.00 0.00 0.00 4.09
3096 5738 3.689649 TCCAAAGATTAGGCTCTTTTCGC 59.310 43.478 0.00 0.00 41.55 4.70
3102 5744 1.836999 TAGGCTCTTTTCGCAGGCCA 61.837 55.000 5.01 0.00 44.60 5.36
3146 5789 8.107399 TCTGAATTGATCTAAATGATGCCATC 57.893 34.615 0.00 0.00 35.14 3.51
3156 5799 1.977056 TGATGCCATCCAATCTGCTC 58.023 50.000 1.49 0.00 0.00 4.26
3238 5889 9.740239 ACAGATTAAGCATATTGTAATTGCAAG 57.260 29.630 14.39 2.80 38.84 4.01
3240 5891 9.135189 AGATTAAGCATATTGTAATTGCAAGGA 57.865 29.630 14.39 5.73 38.84 3.36
3241 5892 9.748708 GATTAAGCATATTGTAATTGCAAGGAA 57.251 29.630 14.39 3.61 38.84 3.36
3253 5904 9.311916 TGTAATTGCAAGGAATAACATTATTGC 57.688 29.630 4.94 7.57 40.47 3.56
3257 5908 9.918630 ATTGCAAGGAATAACATTATTGCTATC 57.081 29.630 15.99 11.93 46.65 2.08
3258 5909 7.584108 TGCAAGGAATAACATTATTGCTATCG 58.416 34.615 15.99 10.38 46.65 2.92
3259 5910 7.228507 TGCAAGGAATAACATTATTGCTATCGT 59.771 33.333 15.99 1.69 46.65 3.73
3260 5911 8.076178 GCAAGGAATAACATTATTGCTATCGTT 58.924 33.333 15.99 1.39 46.65 3.85
3261 5912 9.385902 CAAGGAATAACATTATTGCTATCGTTG 57.614 33.333 15.99 8.66 46.65 4.10
3262 5913 8.677148 AGGAATAACATTATTGCTATCGTTGT 57.323 30.769 14.58 0.00 45.89 3.32
3263 5914 9.120538 AGGAATAACATTATTGCTATCGTTGTT 57.879 29.630 14.58 0.00 45.89 2.83
3264 5915 9.730420 GGAATAACATTATTGCTATCGTTGTTT 57.270 29.630 8.22 1.12 38.13 2.83
3267 5918 7.795431 AACATTATTGCTATCGTTGTTTGTG 57.205 32.000 0.00 0.00 0.00 3.33
3268 5919 6.908825 ACATTATTGCTATCGTTGTTTGTGT 58.091 32.000 0.00 0.00 0.00 3.72
3269 5920 8.035165 ACATTATTGCTATCGTTGTTTGTGTA 57.965 30.769 0.00 0.00 0.00 2.90
3270 5921 8.175069 ACATTATTGCTATCGTTGTTTGTGTAG 58.825 33.333 0.00 0.00 0.00 2.74
3271 5922 4.398549 TTGCTATCGTTGTTTGTGTAGC 57.601 40.909 0.00 0.00 36.11 3.58
3272 5923 2.739913 TGCTATCGTTGTTTGTGTAGCC 59.260 45.455 0.00 0.00 35.02 3.93
3273 5924 2.739913 GCTATCGTTGTTTGTGTAGCCA 59.260 45.455 0.00 0.00 30.93 4.75
3274 5925 3.374058 GCTATCGTTGTTTGTGTAGCCAT 59.626 43.478 0.00 0.00 30.93 4.40
3275 5926 4.142687 GCTATCGTTGTTTGTGTAGCCATT 60.143 41.667 0.00 0.00 30.93 3.16
3276 5927 3.617540 TCGTTGTTTGTGTAGCCATTG 57.382 42.857 0.00 0.00 0.00 2.82
3277 5928 2.050691 CGTTGTTTGTGTAGCCATTGC 58.949 47.619 0.00 0.00 37.95 3.56
3278 5929 2.542618 CGTTGTTTGTGTAGCCATTGCA 60.543 45.455 0.00 0.00 41.13 4.08
3279 5930 2.791383 TGTTTGTGTAGCCATTGCAC 57.209 45.000 0.00 0.00 42.12 4.57
3280 5931 2.305928 TGTTTGTGTAGCCATTGCACT 58.694 42.857 0.00 0.00 42.25 4.40
3281 5932 2.034432 TGTTTGTGTAGCCATTGCACTG 59.966 45.455 0.00 0.00 42.25 3.66
3282 5933 0.597568 TTGTGTAGCCATTGCACTGC 59.402 50.000 0.00 0.00 42.25 4.40
3283 5934 0.536915 TGTGTAGCCATTGCACTGCA 60.537 50.000 0.00 0.00 42.25 4.41
3284 5935 0.109597 GTGTAGCCATTGCACTGCAC 60.110 55.000 2.26 7.36 41.24 4.57
3285 5936 0.536915 TGTAGCCATTGCACTGCACA 60.537 50.000 2.26 0.00 38.71 4.57
3286 5937 0.109597 GTAGCCATTGCACTGCACAC 60.110 55.000 2.26 0.00 38.71 3.82
3287 5938 1.576451 TAGCCATTGCACTGCACACG 61.576 55.000 2.26 0.00 38.71 4.49
3288 5939 2.906939 GCCATTGCACTGCACACGA 61.907 57.895 2.26 0.00 38.71 4.35
3289 5940 1.653667 CCATTGCACTGCACACGAA 59.346 52.632 2.26 0.00 38.71 3.85
3290 5941 0.386352 CCATTGCACTGCACACGAAG 60.386 55.000 2.26 0.00 38.71 3.79
3291 5942 0.308684 CATTGCACTGCACACGAAGT 59.691 50.000 2.26 0.00 38.71 3.01
3303 5954 3.322514 ACGAAGTGGTTCCATGTGG 57.677 52.632 0.00 0.00 42.51 4.17
3304 5955 0.889186 ACGAAGTGGTTCCATGTGGC 60.889 55.000 0.00 0.00 42.51 5.01
3305 5956 0.606401 CGAAGTGGTTCCATGTGGCT 60.606 55.000 0.00 0.00 34.44 4.75
3306 5957 1.338674 CGAAGTGGTTCCATGTGGCTA 60.339 52.381 0.00 0.00 34.44 3.93
3307 5958 2.790433 GAAGTGGTTCCATGTGGCTAA 58.210 47.619 0.00 0.00 34.44 3.09
3308 5959 2.969821 AGTGGTTCCATGTGGCTAAA 57.030 45.000 0.00 0.00 34.44 1.85
3309 5960 3.456380 AGTGGTTCCATGTGGCTAAAT 57.544 42.857 0.00 0.00 34.44 1.40
3310 5961 3.778265 AGTGGTTCCATGTGGCTAAATT 58.222 40.909 0.00 0.00 34.44 1.82
3311 5962 4.929479 AGTGGTTCCATGTGGCTAAATTA 58.071 39.130 0.00 0.00 34.44 1.40
3312 5963 5.518865 AGTGGTTCCATGTGGCTAAATTAT 58.481 37.500 0.00 0.00 34.44 1.28
3313 5964 5.360714 AGTGGTTCCATGTGGCTAAATTATG 59.639 40.000 0.00 0.00 34.44 1.90
3314 5965 4.099266 TGGTTCCATGTGGCTAAATTATGC 59.901 41.667 0.00 0.00 34.44 3.14
3315 5966 4.342092 GGTTCCATGTGGCTAAATTATGCT 59.658 41.667 0.00 0.00 34.44 3.79
3316 5967 5.284079 GTTCCATGTGGCTAAATTATGCTG 58.716 41.667 0.00 0.00 34.44 4.41
3317 5968 3.318839 TCCATGTGGCTAAATTATGCTGC 59.681 43.478 0.00 0.00 34.44 5.25
3318 5969 3.319972 CCATGTGGCTAAATTATGCTGCT 59.680 43.478 0.00 0.00 0.00 4.24
3319 5970 4.295870 CATGTGGCTAAATTATGCTGCTG 58.704 43.478 0.00 0.00 0.00 4.41
3320 5971 3.355378 TGTGGCTAAATTATGCTGCTGT 58.645 40.909 0.00 0.00 0.00 4.40
3321 5972 4.522114 TGTGGCTAAATTATGCTGCTGTA 58.478 39.130 0.00 0.00 0.00 2.74
3322 5973 4.946772 TGTGGCTAAATTATGCTGCTGTAA 59.053 37.500 0.00 0.88 0.00 2.41
3323 5974 5.593909 TGTGGCTAAATTATGCTGCTGTAAT 59.406 36.000 0.00 3.32 0.00 1.89
3324 5975 6.145535 GTGGCTAAATTATGCTGCTGTAATC 58.854 40.000 0.00 0.00 0.00 1.75
3325 5976 6.016777 GTGGCTAAATTATGCTGCTGTAATCT 60.017 38.462 0.00 0.00 0.00 2.40
3326 5977 6.016860 TGGCTAAATTATGCTGCTGTAATCTG 60.017 38.462 0.00 2.35 0.00 2.90
3327 5978 6.376978 GCTAAATTATGCTGCTGTAATCTGG 58.623 40.000 0.00 0.00 0.00 3.86
3328 5979 4.843220 AATTATGCTGCTGTAATCTGGC 57.157 40.909 0.00 0.00 0.00 4.85
3329 5980 3.565764 TTATGCTGCTGTAATCTGGCT 57.434 42.857 0.00 0.00 0.00 4.75
3330 5981 2.431954 ATGCTGCTGTAATCTGGCTT 57.568 45.000 0.00 0.00 0.00 4.35
3331 5982 2.205022 TGCTGCTGTAATCTGGCTTT 57.795 45.000 0.00 0.00 0.00 3.51
3332 5983 2.086869 TGCTGCTGTAATCTGGCTTTC 58.913 47.619 0.00 0.00 0.00 2.62
3333 5984 2.290514 TGCTGCTGTAATCTGGCTTTCT 60.291 45.455 0.00 0.00 0.00 2.52
3334 5985 2.751806 GCTGCTGTAATCTGGCTTTCTT 59.248 45.455 0.00 0.00 0.00 2.52
3335 5986 3.941483 GCTGCTGTAATCTGGCTTTCTTA 59.059 43.478 0.00 0.00 0.00 2.10
3336 5987 4.034975 GCTGCTGTAATCTGGCTTTCTTAG 59.965 45.833 0.00 0.00 0.00 2.18
3361 6012 8.820831 AGCCATATCTAAGTTATATTGCTGAGT 58.179 33.333 4.29 0.00 37.09 3.41
3362 6013 8.877779 GCCATATCTAAGTTATATTGCTGAGTG 58.122 37.037 0.00 0.00 29.65 3.51
3363 6014 8.877779 CCATATCTAAGTTATATTGCTGAGTGC 58.122 37.037 0.00 0.00 43.25 4.40
3380 6031 3.806651 CACCTTGTGCACGTGTCA 58.193 55.556 18.38 12.78 0.00 3.58
3381 6032 1.643292 CACCTTGTGCACGTGTCAG 59.357 57.895 18.38 7.82 0.00 3.51
3382 6033 1.089481 CACCTTGTGCACGTGTCAGT 61.089 55.000 18.38 9.19 0.00 3.41
3383 6034 1.089481 ACCTTGTGCACGTGTCAGTG 61.089 55.000 18.38 12.87 44.47 3.66
3384 6035 1.089481 CCTTGTGCACGTGTCAGTGT 61.089 55.000 18.38 0.00 43.61 3.55
3385 6036 1.566404 CTTGTGCACGTGTCAGTGTA 58.434 50.000 18.38 1.73 43.61 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.808411 GCCGAAAAGAGACCATCACA 58.192 50.000 0.00 0.00 0.00 3.58
150 152 3.802418 AACGCAACGGCCGAGAAGT 62.802 57.895 35.90 22.43 36.38 3.01
158 160 2.117941 AAGAGAAGCAACGCAACGGC 62.118 55.000 0.00 0.00 0.00 5.68
241 245 7.622502 TTAAACTTATGGGTAGGATAGGGTC 57.377 40.000 0.00 0.00 0.00 4.46
261 268 5.047847 CCCGCGAGATCAAGACTATTTAAA 58.952 41.667 8.23 0.00 0.00 1.52
354 362 2.029073 CTCGGTTGCGTCACCTGT 59.971 61.111 3.97 0.00 34.22 4.00
398 407 4.091945 GGAAACGAAACATAGTAACGACCC 59.908 45.833 0.00 0.00 0.00 4.46
544 556 5.446709 CACTTCACACTTCACACAATGATC 58.553 41.667 0.00 0.00 37.11 2.92
547 559 3.793129 GCCACTTCACACTTCACACAATG 60.793 47.826 0.00 0.00 0.00 2.82
548 560 2.358898 GCCACTTCACACTTCACACAAT 59.641 45.455 0.00 0.00 0.00 2.71
549 561 1.742831 GCCACTTCACACTTCACACAA 59.257 47.619 0.00 0.00 0.00 3.33
551 563 0.304705 CGCCACTTCACACTTCACAC 59.695 55.000 0.00 0.00 0.00 3.82
552 564 0.176910 TCGCCACTTCACACTTCACA 59.823 50.000 0.00 0.00 0.00 3.58
553 565 1.512926 ATCGCCACTTCACACTTCAC 58.487 50.000 0.00 0.00 0.00 3.18
554 566 1.872952 CAATCGCCACTTCACACTTCA 59.127 47.619 0.00 0.00 0.00 3.02
555 567 1.873591 ACAATCGCCACTTCACACTTC 59.126 47.619 0.00 0.00 0.00 3.01
556 568 1.967319 ACAATCGCCACTTCACACTT 58.033 45.000 0.00 0.00 0.00 3.16
557 569 2.612972 CCTACAATCGCCACTTCACACT 60.613 50.000 0.00 0.00 0.00 3.55
577 589 3.365472 ACAATGGGATAAAGAGTTGGCC 58.635 45.455 0.00 0.00 0.00 5.36
645 663 0.254462 TTGGAGGCATAACCGCATGA 59.746 50.000 0.00 0.00 46.52 3.07
716 734 1.503818 GCAAACGTCCGTGGACACAT 61.504 55.000 18.54 1.08 44.77 3.21
717 735 2.174969 GCAAACGTCCGTGGACACA 61.175 57.895 18.54 0.00 44.77 3.72
718 736 1.433837 AAGCAAACGTCCGTGGACAC 61.434 55.000 18.54 2.98 44.77 3.67
719 737 1.153329 AAGCAAACGTCCGTGGACA 60.153 52.632 18.54 0.00 44.77 4.02
720 738 1.278637 CAAGCAAACGTCCGTGGAC 59.721 57.895 9.04 9.04 41.40 4.02
721 739 1.890041 CCAAGCAAACGTCCGTGGA 60.890 57.895 9.17 0.00 33.21 4.02
722 740 2.637025 CCAAGCAAACGTCCGTGG 59.363 61.111 0.00 0.00 0.00 4.94
723 741 2.184167 ACCCAAGCAAACGTCCGTG 61.184 57.895 0.00 0.00 0.00 4.94
724 742 2.184167 CACCCAAGCAAACGTCCGT 61.184 57.895 0.00 0.00 0.00 4.69
725 743 2.637025 CACCCAAGCAAACGTCCG 59.363 61.111 0.00 0.00 0.00 4.79
726 744 2.335011 GCACCCAAGCAAACGTCC 59.665 61.111 0.00 0.00 0.00 4.79
727 745 2.051345 CGCACCCAAGCAAACGTC 60.051 61.111 0.00 0.00 0.00 4.34
728 746 4.264638 GCGCACCCAAGCAAACGT 62.265 61.111 0.30 0.00 0.00 3.99
729 747 4.999939 GGCGCACCCAAGCAAACG 63.000 66.667 10.83 0.00 34.54 3.60
730 748 2.200170 CTAGGCGCACCCAAGCAAAC 62.200 60.000 10.83 0.00 36.11 2.93
731 749 1.971167 CTAGGCGCACCCAAGCAAA 60.971 57.895 10.83 0.00 36.11 3.68
732 750 2.359850 CTAGGCGCACCCAAGCAA 60.360 61.111 10.83 0.00 36.11 3.91
733 751 2.404566 TTTCTAGGCGCACCCAAGCA 62.405 55.000 10.83 0.00 36.11 3.91
734 752 1.241315 TTTTCTAGGCGCACCCAAGC 61.241 55.000 10.83 0.00 36.11 4.01
735 753 0.804989 CTTTTCTAGGCGCACCCAAG 59.195 55.000 10.83 0.00 36.11 3.61
736 754 0.398696 TCTTTTCTAGGCGCACCCAA 59.601 50.000 10.83 0.00 36.11 4.12
737 755 0.618458 ATCTTTTCTAGGCGCACCCA 59.382 50.000 10.83 0.00 36.11 4.51
738 756 2.614829 TATCTTTTCTAGGCGCACCC 57.385 50.000 10.83 0.00 36.11 4.61
739 757 3.877508 ACATTATCTTTTCTAGGCGCACC 59.122 43.478 10.83 0.00 0.00 5.01
740 758 5.266242 CAACATTATCTTTTCTAGGCGCAC 58.734 41.667 10.83 0.00 0.00 5.34
741 759 4.335315 CCAACATTATCTTTTCTAGGCGCA 59.665 41.667 10.83 0.00 0.00 6.09
742 760 4.574828 TCCAACATTATCTTTTCTAGGCGC 59.425 41.667 0.00 0.00 0.00 6.53
743 761 6.867662 ATCCAACATTATCTTTTCTAGGCG 57.132 37.500 0.00 0.00 0.00 5.52
779 797 9.724839 GCGGTGAATATATTTCTCTATCTCTAC 57.275 37.037 0.00 0.00 0.00 2.59
780 798 9.462606 TGCGGTGAATATATTTCTCTATCTCTA 57.537 33.333 0.00 0.00 0.00 2.43
781 799 8.354711 TGCGGTGAATATATTTCTCTATCTCT 57.645 34.615 0.00 0.00 0.00 3.10
782 800 9.593134 AATGCGGTGAATATATTTCTCTATCTC 57.407 33.333 0.00 0.00 0.00 2.75
783 801 9.950496 AAATGCGGTGAATATATTTCTCTATCT 57.050 29.630 0.00 0.00 0.00 1.98
785 803 9.167311 GGAAATGCGGTGAATATATTTCTCTAT 57.833 33.333 0.00 0.00 37.69 1.98
786 804 8.154203 TGGAAATGCGGTGAATATATTTCTCTA 58.846 33.333 0.00 0.00 37.69 2.43
787 805 6.998074 TGGAAATGCGGTGAATATATTTCTCT 59.002 34.615 0.00 0.00 37.69 3.10
788 806 7.202016 TGGAAATGCGGTGAATATATTTCTC 57.798 36.000 0.00 0.00 37.69 2.87
789 807 7.581213 TTGGAAATGCGGTGAATATATTTCT 57.419 32.000 0.00 0.00 37.69 2.52
790 808 8.641499 TTTTGGAAATGCGGTGAATATATTTC 57.359 30.769 0.00 0.00 37.14 2.17
791 809 9.612066 ATTTTTGGAAATGCGGTGAATATATTT 57.388 25.926 0.00 0.00 34.26 1.40
792 810 9.612066 AATTTTTGGAAATGCGGTGAATATATT 57.388 25.926 0.00 0.00 35.69 1.28
795 813 9.612066 ATTAATTTTTGGAAATGCGGTGAATAT 57.388 25.926 0.00 0.00 35.69 1.28
797 815 7.920160 ATTAATTTTTGGAAATGCGGTGAAT 57.080 28.000 0.00 0.00 35.69 2.57
798 816 8.833231 TTATTAATTTTTGGAAATGCGGTGAA 57.167 26.923 0.00 0.00 35.69 3.18
801 819 9.877178 TGTATTATTAATTTTTGGAAATGCGGT 57.123 25.926 0.00 0.00 35.69 5.68
819 837 9.923143 TGCTGCGTCTAATATTACTGTATTATT 57.077 29.630 15.36 15.36 0.00 1.40
821 839 9.923143 AATGCTGCGTCTAATATTACTGTATTA 57.077 29.630 0.00 0.00 0.00 0.98
822 840 8.833231 AATGCTGCGTCTAATATTACTGTATT 57.167 30.769 0.00 0.00 0.00 1.89
823 841 8.833231 AAATGCTGCGTCTAATATTACTGTAT 57.167 30.769 0.00 0.00 0.00 2.29
824 842 7.114388 CGAAATGCTGCGTCTAATATTACTGTA 59.886 37.037 0.00 0.00 0.00 2.74
825 843 6.074302 CGAAATGCTGCGTCTAATATTACTGT 60.074 38.462 0.00 0.00 0.00 3.55
826 844 6.292129 CGAAATGCTGCGTCTAATATTACTG 58.708 40.000 0.00 0.00 0.00 2.74
827 845 5.107453 GCGAAATGCTGCGTCTAATATTACT 60.107 40.000 0.00 0.00 41.73 2.24
828 846 5.073478 GCGAAATGCTGCGTCTAATATTAC 58.927 41.667 0.00 0.00 41.73 1.89
829 847 4.151689 GGCGAAATGCTGCGTCTAATATTA 59.848 41.667 0.00 0.00 45.43 0.98
830 848 3.058914 GGCGAAATGCTGCGTCTAATATT 60.059 43.478 0.00 0.00 45.43 1.28
831 849 2.480419 GGCGAAATGCTGCGTCTAATAT 59.520 45.455 0.00 0.00 45.43 1.28
832 850 1.864711 GGCGAAATGCTGCGTCTAATA 59.135 47.619 0.00 0.00 45.43 0.98
866 884 4.655921 GGGGATGATGTTCGCCAA 57.344 55.556 2.97 0.00 45.52 4.52
884 902 3.002656 AGCATTTTTACAGATCGGCGATG 59.997 43.478 29.20 18.25 0.00 3.84
886 904 2.627945 AGCATTTTTACAGATCGGCGA 58.372 42.857 13.87 13.87 0.00 5.54
887 905 3.601586 CGTAGCATTTTTACAGATCGGCG 60.602 47.826 0.00 0.00 0.00 6.46
888 906 3.303132 CCGTAGCATTTTTACAGATCGGC 60.303 47.826 0.00 0.00 0.00 5.54
889 907 3.869246 ACCGTAGCATTTTTACAGATCGG 59.131 43.478 0.00 0.00 40.00 4.18
890 908 5.464965 AACCGTAGCATTTTTACAGATCG 57.535 39.130 0.00 0.00 0.00 3.69
892 910 9.052759 CCTATTAACCGTAGCATTTTTACAGAT 57.947 33.333 0.00 0.00 0.00 2.90
893 911 8.042515 ACCTATTAACCGTAGCATTTTTACAGA 58.957 33.333 0.00 0.00 0.00 3.41
894 912 8.205131 ACCTATTAACCGTAGCATTTTTACAG 57.795 34.615 0.00 0.00 0.00 2.74
895 913 8.564509 AACCTATTAACCGTAGCATTTTTACA 57.435 30.769 0.00 0.00 0.00 2.41
909 927 9.645059 GATCGGTAACCTATTAACCTATTAACC 57.355 37.037 0.00 0.00 33.09 2.85
910 928 9.645059 GGATCGGTAACCTATTAACCTATTAAC 57.355 37.037 0.00 0.00 33.09 2.01
911 929 9.605951 AGGATCGGTAACCTATTAACCTATTAA 57.394 33.333 0.00 0.00 34.47 1.40
912 930 9.247861 GAGGATCGGTAACCTATTAACCTATTA 57.752 37.037 0.00 0.00 36.57 0.98
913 931 7.179872 GGAGGATCGGTAACCTATTAACCTATT 59.820 40.741 0.00 0.00 36.57 1.73
914 932 6.666980 GGAGGATCGGTAACCTATTAACCTAT 59.333 42.308 0.00 0.00 36.57 2.57
915 933 6.012745 GGAGGATCGGTAACCTATTAACCTA 58.987 44.000 0.00 0.00 36.57 3.08
916 934 4.837298 GGAGGATCGGTAACCTATTAACCT 59.163 45.833 0.00 0.00 36.57 3.50
1112 1196 0.664466 GCCGCTGAAAGGAACAAAGC 60.664 55.000 0.00 0.00 0.00 3.51
1191 1325 3.695606 GCCGTCACTGCCTCCTCA 61.696 66.667 0.00 0.00 0.00 3.86
1578 1730 4.055360 CGATGTAATGGTATTCAAGCGGA 58.945 43.478 0.00 0.00 0.00 5.54
1677 1836 1.701704 CTGGATCAAAAGCCAAACGC 58.298 50.000 0.00 0.00 41.34 4.84
1702 1861 0.321298 AGAACGTGGAAATGGGACGG 60.321 55.000 0.00 0.00 37.42 4.79
1993 2160 0.388520 CGCTGTGACACTCCGATCAA 60.389 55.000 7.20 0.00 0.00 2.57
2053 2221 7.610580 TCTTCCTCTTCTTCTTCTTCTTCTT 57.389 36.000 0.00 0.00 0.00 2.52
2054 2222 7.508977 TCTTCTTCCTCTTCTTCTTCTTCTTCT 59.491 37.037 0.00 0.00 0.00 2.85
2055 2223 7.666623 TCTTCTTCCTCTTCTTCTTCTTCTTC 58.333 38.462 0.00 0.00 0.00 2.87
2086 2254 4.872691 CCAGACTGTTGTTGTATCCTCATC 59.127 45.833 0.93 0.00 0.00 2.92
2205 2390 0.095935 CGCAGTCTGGATGAAAAGCG 59.904 55.000 1.14 0.00 36.01 4.68
2263 2506 4.107622 CGATGCTGCATATCGTATGATGA 58.892 43.478 16.23 0.00 41.71 2.92
2380 4821 2.717580 TGCAGGTAACACTACTGTCG 57.282 50.000 0.00 0.00 41.41 4.35
2427 4879 2.028567 AGCACCTACAGAAGAAGAGCAC 60.029 50.000 0.00 0.00 0.00 4.40
2455 4907 8.642020 GCAAATTCAGATATCAACAGACAAAAC 58.358 33.333 5.32 0.00 0.00 2.43
2505 4970 1.888436 TAGCAGGAGCACAAGGACCG 61.888 60.000 0.00 0.00 45.49 4.79
2509 4974 1.415659 AGCTATAGCAGGAGCACAAGG 59.584 52.381 26.07 0.00 45.49 3.61
2523 4988 5.523916 GCTCCGAACAGAAAATCAAGCTATA 59.476 40.000 0.00 0.00 0.00 1.31
2524 4989 4.333926 GCTCCGAACAGAAAATCAAGCTAT 59.666 41.667 0.00 0.00 0.00 2.97
2741 5221 9.762933 AATACACTAAAGGTTTACGAACTACAA 57.237 29.630 0.00 0.00 36.03 2.41
2742 5222 9.410556 GAATACACTAAAGGTTTACGAACTACA 57.589 33.333 0.00 0.00 36.03 2.74
2865 5358 4.337555 GCAGACTGAATTCATTGGCTACAT 59.662 41.667 8.96 0.00 0.00 2.29
2872 5365 4.008330 ACTGGAGCAGACTGAATTCATTG 58.992 43.478 8.96 9.15 35.18 2.82
2890 5383 6.879458 AGGTTATGTAGCAGAAGTTAAACTGG 59.121 38.462 0.00 0.00 35.05 4.00
2909 5402 4.370094 TTCCGTTGGGTTAACAGGTTAT 57.630 40.909 8.10 0.00 39.30 1.89
2927 5426 7.267128 TCTTTCACCAATGATGCAAATATTCC 58.733 34.615 0.00 0.00 33.85 3.01
2933 5432 6.479660 GTCTTTTCTTTCACCAATGATGCAAA 59.520 34.615 0.00 0.00 33.85 3.68
2942 5441 3.631250 AGCTGGTCTTTTCTTTCACCAA 58.369 40.909 0.00 0.00 38.47 3.67
2945 5444 5.248870 TGAAAGCTGGTCTTTTCTTTCAC 57.751 39.130 10.95 0.00 45.23 3.18
2956 5455 7.622893 AGAAATCTTCTTATGAAAGCTGGTC 57.377 36.000 0.00 0.00 36.36 4.02
2972 5471 5.508657 GCTTTTCTCACCAGCAAGAAATCTT 60.509 40.000 0.00 0.00 40.25 2.40
2975 5616 3.638160 TGCTTTTCTCACCAGCAAGAAAT 59.362 39.130 0.00 0.00 40.61 2.17
2995 5637 3.879892 GGGTAGAAATGGACATCTCTTGC 59.120 47.826 0.00 0.00 0.00 4.01
3001 5643 4.222124 ACACAGGGTAGAAATGGACATC 57.778 45.455 0.00 0.00 0.00 3.06
3004 5646 3.009143 AGGAACACAGGGTAGAAATGGAC 59.991 47.826 0.00 0.00 0.00 4.02
3005 5647 3.256704 AGGAACACAGGGTAGAAATGGA 58.743 45.455 0.00 0.00 0.00 3.41
3006 5648 3.264450 AGAGGAACACAGGGTAGAAATGG 59.736 47.826 0.00 0.00 0.00 3.16
3007 5649 4.256920 CAGAGGAACACAGGGTAGAAATG 58.743 47.826 0.00 0.00 0.00 2.32
3008 5650 3.910627 ACAGAGGAACACAGGGTAGAAAT 59.089 43.478 0.00 0.00 0.00 2.17
3009 5651 3.314693 ACAGAGGAACACAGGGTAGAAA 58.685 45.455 0.00 0.00 0.00 2.52
3010 5652 2.972348 ACAGAGGAACACAGGGTAGAA 58.028 47.619 0.00 0.00 0.00 2.10
3011 5653 2.696526 ACAGAGGAACACAGGGTAGA 57.303 50.000 0.00 0.00 0.00 2.59
3012 5654 2.900546 AGAACAGAGGAACACAGGGTAG 59.099 50.000 0.00 0.00 0.00 3.18
3013 5655 2.632996 CAGAACAGAGGAACACAGGGTA 59.367 50.000 0.00 0.00 0.00 3.69
3014 5656 1.417890 CAGAACAGAGGAACACAGGGT 59.582 52.381 0.00 0.00 0.00 4.34
3015 5657 1.271054 CCAGAACAGAGGAACACAGGG 60.271 57.143 0.00 0.00 0.00 4.45
3016 5658 1.271054 CCCAGAACAGAGGAACACAGG 60.271 57.143 0.00 0.00 0.00 4.00
3017 5659 1.694150 TCCCAGAACAGAGGAACACAG 59.306 52.381 0.00 0.00 0.00 3.66
3018 5660 1.694150 CTCCCAGAACAGAGGAACACA 59.306 52.381 0.00 0.00 0.00 3.72
3019 5661 2.464157 CTCCCAGAACAGAGGAACAC 57.536 55.000 0.00 0.00 0.00 3.32
3025 5667 3.539604 CTTAATGCCTCCCAGAACAGAG 58.460 50.000 0.00 0.00 0.00 3.35
3026 5668 2.356125 GCTTAATGCCTCCCAGAACAGA 60.356 50.000 0.00 0.00 35.15 3.41
3027 5669 2.019984 GCTTAATGCCTCCCAGAACAG 58.980 52.381 0.00 0.00 35.15 3.16
3028 5670 1.354031 TGCTTAATGCCTCCCAGAACA 59.646 47.619 0.00 0.00 42.00 3.18
3029 5671 2.019984 CTGCTTAATGCCTCCCAGAAC 58.980 52.381 0.00 0.00 42.00 3.01
3030 5672 1.635487 ACTGCTTAATGCCTCCCAGAA 59.365 47.619 0.00 0.00 42.00 3.02
3031 5673 1.065199 CACTGCTTAATGCCTCCCAGA 60.065 52.381 0.00 0.00 42.00 3.86
3032 5674 1.386533 CACTGCTTAATGCCTCCCAG 58.613 55.000 0.00 0.00 42.00 4.45
3033 5675 0.680921 GCACTGCTTAATGCCTCCCA 60.681 55.000 0.00 0.00 42.00 4.37
3034 5676 0.394899 AGCACTGCTTAATGCCTCCC 60.395 55.000 0.00 0.00 43.12 4.30
3035 5677 3.181526 AGCACTGCTTAATGCCTCC 57.818 52.632 0.00 0.00 43.12 4.30
3045 5687 2.044806 AACGTGGAGGAAGCACTGCT 62.045 55.000 0.00 0.00 42.56 4.24
3046 5688 1.166531 AAACGTGGAGGAAGCACTGC 61.167 55.000 0.00 0.00 0.00 4.40
3047 5689 0.588252 CAAACGTGGAGGAAGCACTG 59.412 55.000 0.00 0.00 0.00 3.66
3048 5690 0.180406 ACAAACGTGGAGGAAGCACT 59.820 50.000 0.00 0.00 0.00 4.40
3049 5691 0.307760 CACAAACGTGGAGGAAGCAC 59.692 55.000 0.00 0.00 0.00 4.40
3053 5695 2.105821 AGGAATCACAAACGTGGAGGAA 59.894 45.455 0.00 0.00 34.98 3.36
3057 5699 1.418264 TGGAGGAATCACAAACGTGGA 59.582 47.619 0.00 0.00 34.98 4.02
3058 5700 1.890876 TGGAGGAATCACAAACGTGG 58.109 50.000 0.00 0.00 34.98 4.94
3061 5703 5.376854 AATCTTTGGAGGAATCACAAACG 57.623 39.130 0.00 0.00 31.51 3.60
3084 5726 2.360475 GGCCTGCGAAAAGAGCCT 60.360 61.111 0.00 0.00 40.57 4.58
3090 5732 4.636249 ACAAATAATTTGGCCTGCGAAAA 58.364 34.783 3.32 0.00 44.81 2.29
3131 5774 4.521639 GCAGATTGGATGGCATCATTTAGA 59.478 41.667 27.39 7.78 32.98 2.10
3146 5789 1.725641 TGTAAGCACGAGCAGATTGG 58.274 50.000 7.77 0.00 45.49 3.16
3156 5799 1.594862 GCTAGCTGGAATGTAAGCACG 59.405 52.381 7.70 0.00 42.06 5.34
3238 5889 9.730420 AAACAACGATAGCAATAATGTTATTCC 57.270 29.630 0.00 0.00 33.65 3.01
3241 5892 9.502145 CACAAACAACGATAGCAATAATGTTAT 57.498 29.630 0.00 0.00 35.88 1.89
3248 5899 5.064198 GGCTACACAAACAACGATAGCAATA 59.936 40.000 0.00 0.00 37.39 1.90
3249 5900 4.142687 GGCTACACAAACAACGATAGCAAT 60.143 41.667 0.00 0.00 37.39 3.56
3250 5901 3.187637 GGCTACACAAACAACGATAGCAA 59.812 43.478 0.00 0.00 37.39 3.91
3251 5902 2.739913 GGCTACACAAACAACGATAGCA 59.260 45.455 0.00 0.00 37.39 3.49
3252 5903 2.739913 TGGCTACACAAACAACGATAGC 59.260 45.455 0.00 0.00 42.67 2.97
3253 5904 5.323900 CAATGGCTACACAAACAACGATAG 58.676 41.667 0.00 0.00 46.19 2.08
3254 5905 4.378978 GCAATGGCTACACAAACAACGATA 60.379 41.667 0.00 0.00 36.96 2.92
3255 5906 3.611530 GCAATGGCTACACAAACAACGAT 60.612 43.478 0.00 0.00 36.96 3.73
3256 5907 2.287308 GCAATGGCTACACAAACAACGA 60.287 45.455 0.00 0.00 36.96 3.85
3257 5908 2.050691 GCAATGGCTACACAAACAACG 58.949 47.619 0.00 0.00 36.96 4.10
3258 5909 2.794350 GTGCAATGGCTACACAAACAAC 59.206 45.455 0.00 0.00 41.91 3.32
3259 5910 2.692557 AGTGCAATGGCTACACAAACAA 59.307 40.909 0.00 0.00 41.91 2.83
3260 5911 2.034432 CAGTGCAATGGCTACACAAACA 59.966 45.455 6.18 0.00 41.91 2.83
3261 5912 2.664916 CAGTGCAATGGCTACACAAAC 58.335 47.619 6.18 0.00 41.91 2.93
3262 5913 1.000385 GCAGTGCAATGGCTACACAAA 60.000 47.619 16.93 0.00 41.91 2.83
3263 5914 0.597568 GCAGTGCAATGGCTACACAA 59.402 50.000 16.93 0.00 41.91 3.33
3264 5915 0.536915 TGCAGTGCAATGGCTACACA 60.537 50.000 17.26 0.75 41.91 3.72
3265 5916 0.109597 GTGCAGTGCAATGGCTACAC 60.110 55.000 21.67 11.24 41.47 2.90
3266 5917 0.536915 TGTGCAGTGCAATGGCTACA 60.537 50.000 21.67 8.91 41.47 2.74
3267 5918 0.109597 GTGTGCAGTGCAATGGCTAC 60.110 55.000 21.67 5.99 41.47 3.58
3268 5919 1.576451 CGTGTGCAGTGCAATGGCTA 61.576 55.000 21.67 0.00 41.47 3.93
3269 5920 2.911484 CGTGTGCAGTGCAATGGCT 61.911 57.895 21.67 0.00 41.47 4.75
3270 5921 2.405061 TTCGTGTGCAGTGCAATGGC 62.405 55.000 21.67 8.03 41.47 4.40
3271 5922 0.386352 CTTCGTGTGCAGTGCAATGG 60.386 55.000 21.67 11.66 41.47 3.16
3272 5923 0.308684 ACTTCGTGTGCAGTGCAATG 59.691 50.000 21.67 10.38 41.47 2.82
3273 5924 0.308684 CACTTCGTGTGCAGTGCAAT 59.691 50.000 21.67 0.00 41.47 3.56
3274 5925 1.713937 CCACTTCGTGTGCAGTGCAA 61.714 55.000 21.67 7.65 44.92 4.08
3275 5926 2.179547 CCACTTCGTGTGCAGTGCA 61.180 57.895 15.37 15.37 44.92 4.57
3276 5927 1.714899 AACCACTTCGTGTGCAGTGC 61.715 55.000 8.58 8.58 44.92 4.40
3277 5928 0.304705 GAACCACTTCGTGTGCAGTG 59.695 55.000 0.00 0.00 44.92 3.66
3278 5929 0.814010 GGAACCACTTCGTGTGCAGT 60.814 55.000 0.00 0.00 44.92 4.40
3279 5930 0.813610 TGGAACCACTTCGTGTGCAG 60.814 55.000 0.00 0.00 44.92 4.41
3280 5931 0.179032 ATGGAACCACTTCGTGTGCA 60.179 50.000 0.00 0.00 44.92 4.57
3281 5932 0.238289 CATGGAACCACTTCGTGTGC 59.762 55.000 0.00 0.00 44.92 4.57
3282 5933 1.264020 CACATGGAACCACTTCGTGTG 59.736 52.381 9.19 9.19 45.80 3.82
3283 5934 1.593196 CACATGGAACCACTTCGTGT 58.407 50.000 0.00 0.00 0.00 4.49
3284 5935 0.874390 CCACATGGAACCACTTCGTG 59.126 55.000 0.00 2.23 37.39 4.35
3285 5936 0.889186 GCCACATGGAACCACTTCGT 60.889 55.000 0.87 0.00 37.39 3.85
3286 5937 0.606401 AGCCACATGGAACCACTTCG 60.606 55.000 0.87 0.00 37.39 3.79
3287 5938 2.489938 TAGCCACATGGAACCACTTC 57.510 50.000 0.87 0.00 37.39 3.01
3288 5939 2.969821 TTAGCCACATGGAACCACTT 57.030 45.000 0.87 0.00 37.39 3.16
3289 5940 2.969821 TTTAGCCACATGGAACCACT 57.030 45.000 0.87 0.00 37.39 4.00
3290 5941 5.591099 CATAATTTAGCCACATGGAACCAC 58.409 41.667 0.87 0.00 37.39 4.16
3291 5942 4.099266 GCATAATTTAGCCACATGGAACCA 59.901 41.667 0.87 0.00 37.39 3.67
3292 5943 4.342092 AGCATAATTTAGCCACATGGAACC 59.658 41.667 0.87 0.00 37.39 3.62
3293 5944 5.284079 CAGCATAATTTAGCCACATGGAAC 58.716 41.667 0.87 0.00 37.39 3.62
3294 5945 4.202141 GCAGCATAATTTAGCCACATGGAA 60.202 41.667 0.87 0.00 37.39 3.53
3295 5946 3.318839 GCAGCATAATTTAGCCACATGGA 59.681 43.478 0.87 0.00 37.39 3.41
3296 5947 3.319972 AGCAGCATAATTTAGCCACATGG 59.680 43.478 0.00 0.00 38.53 3.66
3297 5948 4.202080 ACAGCAGCATAATTTAGCCACATG 60.202 41.667 0.00 0.00 0.00 3.21
3298 5949 3.956199 ACAGCAGCATAATTTAGCCACAT 59.044 39.130 0.00 0.00 0.00 3.21
3299 5950 3.355378 ACAGCAGCATAATTTAGCCACA 58.645 40.909 0.00 0.00 0.00 4.17
3300 5951 5.499139 TTACAGCAGCATAATTTAGCCAC 57.501 39.130 0.00 0.00 0.00 5.01
3301 5952 6.016860 CAGATTACAGCAGCATAATTTAGCCA 60.017 38.462 0.00 0.00 0.00 4.75
3302 5953 6.376978 CAGATTACAGCAGCATAATTTAGCC 58.623 40.000 0.00 0.00 0.00 3.93
3303 5954 6.376978 CCAGATTACAGCAGCATAATTTAGC 58.623 40.000 0.00 0.00 0.00 3.09
3304 5955 6.206243 AGCCAGATTACAGCAGCATAATTTAG 59.794 38.462 0.00 0.00 0.00 1.85
3305 5956 6.064060 AGCCAGATTACAGCAGCATAATTTA 58.936 36.000 0.00 0.00 0.00 1.40
3306 5957 4.891756 AGCCAGATTACAGCAGCATAATTT 59.108 37.500 0.00 0.00 0.00 1.82
3307 5958 4.467769 AGCCAGATTACAGCAGCATAATT 58.532 39.130 0.00 0.00 0.00 1.40
3308 5959 4.096190 AGCCAGATTACAGCAGCATAAT 57.904 40.909 0.00 0.00 0.00 1.28
3309 5960 3.565764 AGCCAGATTACAGCAGCATAA 57.434 42.857 0.00 0.00 0.00 1.90
3310 5961 3.565764 AAGCCAGATTACAGCAGCATA 57.434 42.857 0.00 0.00 0.00 3.14
3311 5962 2.431954 AAGCCAGATTACAGCAGCAT 57.568 45.000 0.00 0.00 0.00 3.79
3312 5963 2.086869 GAAAGCCAGATTACAGCAGCA 58.913 47.619 0.00 0.00 0.00 4.41
3313 5964 2.363683 AGAAAGCCAGATTACAGCAGC 58.636 47.619 0.00 0.00 0.00 5.25
3314 5965 4.034975 GCTAAGAAAGCCAGATTACAGCAG 59.965 45.833 0.00 0.00 46.25 4.24
3315 5966 3.941483 GCTAAGAAAGCCAGATTACAGCA 59.059 43.478 0.00 0.00 46.25 4.41
3316 5967 4.544242 GCTAAGAAAGCCAGATTACAGC 57.456 45.455 0.00 0.00 46.25 4.40
3335 5986 8.820831 ACTCAGCAATATAACTTAGATATGGCT 58.179 33.333 0.00 0.00 44.16 4.75
3336 5987 8.877779 CACTCAGCAATATAACTTAGATATGGC 58.122 37.037 0.00 0.00 36.73 4.40
3337 5988 8.877779 GCACTCAGCAATATAACTTAGATATGG 58.122 37.037 0.00 0.00 44.79 2.74
3364 6015 1.089481 CACTGACACGTGCACAAGGT 61.089 55.000 17.22 11.20 0.00 3.50
3365 6016 1.089481 ACACTGACACGTGCACAAGG 61.089 55.000 17.22 12.60 38.45 3.61
3366 6017 1.257936 GTACACTGACACGTGCACAAG 59.742 52.381 17.22 10.85 38.45 3.16
3367 6018 1.134936 AGTACACTGACACGTGCACAA 60.135 47.619 17.22 0.00 38.45 3.33
3368 6019 0.458260 AGTACACTGACACGTGCACA 59.542 50.000 17.22 15.13 38.45 4.57
3369 6020 1.567504 AAGTACACTGACACGTGCAC 58.432 50.000 17.22 6.82 38.45 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.