Multiple sequence alignment - TraesCS2D01G418800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G418800 chr2D 100.000 3896 0 0 1 3896 533065179 533061284 0.000000e+00 7195.0
1 TraesCS2D01G418800 chr2D 82.659 346 37 12 1208 1533 533063649 533063307 6.370000e-73 285.0
2 TraesCS2D01G418800 chr2D 82.659 346 37 11 1531 1873 533063972 533063647 6.370000e-73 285.0
3 TraesCS2D01G418800 chr2D 96.610 59 2 0 3828 3886 533061409 533061351 8.910000e-17 99.0
4 TraesCS2D01G418800 chr2B 91.913 3351 200 30 1 3331 632626528 632623229 0.000000e+00 4621.0
5 TraesCS2D01G418800 chr2B 80.058 346 37 14 1531 1873 632625341 632625025 1.090000e-55 228.0
6 TraesCS2D01G418800 chr2A 90.349 3326 199 66 64 3330 677484500 677481238 0.000000e+00 4252.0
7 TraesCS2D01G418800 chr2A 86.994 346 37 7 1531 1873 677483395 677483055 2.200000e-102 383.0
8 TraesCS2D01G418800 chr2A 83.815 346 33 15 1208 1533 677483057 677482715 1.360000e-79 307.0
9 TraesCS2D01G418800 chr2A 100.000 43 0 0 1 43 677484543 677484501 3.230000e-11 80.5
10 TraesCS2D01G418800 chr7A 90.957 376 24 9 3456 3824 564612129 564611757 7.520000e-137 497.0
11 TraesCS2D01G418800 chr7A 89.368 348 31 6 3479 3824 35678916 35679259 2.150000e-117 433.0
12 TraesCS2D01G418800 chr7A 81.437 334 52 5 1859 2191 436887189 436887513 8.300000e-67 265.0
13 TraesCS2D01G418800 chrUn 90.000 360 30 6 3470 3828 403841199 403841553 9.860000e-126 460.0
14 TraesCS2D01G418800 chrUn 89.197 361 33 6 3466 3824 8533168 8532812 2.760000e-121 446.0
15 TraesCS2D01G418800 chr1A 88.594 377 26 13 3456 3824 5659372 5659739 3.570000e-120 442.0
16 TraesCS2D01G418800 chr6A 88.649 370 31 7 3456 3824 32602234 32602593 1.280000e-119 440.0
17 TraesCS2D01G418800 chr5A 87.071 379 37 12 3456 3828 650289103 650289475 6.020000e-113 418.0
18 TraesCS2D01G418800 chr4A 87.433 374 33 14 3456 3824 609085821 609085457 6.020000e-113 418.0
19 TraesCS2D01G418800 chr3A 87.097 372 40 7 3458 3828 694971360 694971724 7.790000e-112 414.0
20 TraesCS2D01G418800 chr7D 83.191 351 46 7 1860 2206 625200336 625200677 3.780000e-80 309.0
21 TraesCS2D01G418800 chr3D 86.364 198 24 3 1860 2055 534211381 534211185 3.050000e-51 213.0
22 TraesCS2D01G418800 chr6B 92.982 57 2 2 3828 3884 632188936 632188882 8.970000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G418800 chr2D 533061284 533065179 3895 True 1966.000 7195 90.4820 1 3896 4 chr2D.!!$R1 3895
1 TraesCS2D01G418800 chr2B 632623229 632626528 3299 True 2424.500 4621 85.9855 1 3331 2 chr2B.!!$R1 3330
2 TraesCS2D01G418800 chr2A 677481238 677484543 3305 True 1255.625 4252 90.2895 1 3330 4 chr2A.!!$R1 3329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.462047 GGTAGATTCCGTGGGCTGTG 60.462 60.0 0.00 0.0 0.00 3.66 F
1048 1060 0.179197 GATCGAGAACACGACGAGCA 60.179 55.0 0.00 0.0 44.84 4.26 F
1116 1128 0.250901 ACGAGCTGGCCATTCTTTGT 60.251 50.0 5.51 7.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1092 0.386478 CGTTTGCCTTCTTGAGCAGC 60.386 55.0 0.0 0.0 40.73 5.25 R
2849 2888 0.318699 TCAGGTCAGACGAACTTGCG 60.319 55.0 0.0 0.0 36.93 4.85 R
2911 2966 1.103803 TAGCGTCTGTCAGGTCCATC 58.896 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.817229 GGAGTAGCCTGGATGCAAGC 60.817 60.000 2.25 0.00 0.00 4.01
213 214 1.067425 TGCTGCATTGTTTGAGATGCC 60.067 47.619 0.00 0.00 46.16 4.40
275 276 2.108362 CGGGTAGATTCCGTGGGC 59.892 66.667 0.00 0.00 42.33 5.36
276 277 2.432300 CGGGTAGATTCCGTGGGCT 61.432 63.158 0.00 0.00 42.33 5.19
277 278 1.146263 GGGTAGATTCCGTGGGCTG 59.854 63.158 0.00 0.00 0.00 4.85
278 279 1.623542 GGGTAGATTCCGTGGGCTGT 61.624 60.000 0.00 0.00 0.00 4.40
279 280 0.462047 GGTAGATTCCGTGGGCTGTG 60.462 60.000 0.00 0.00 0.00 3.66
280 281 1.090052 GTAGATTCCGTGGGCTGTGC 61.090 60.000 0.00 0.00 0.00 4.57
281 282 1.549243 TAGATTCCGTGGGCTGTGCA 61.549 55.000 0.00 0.00 0.00 4.57
282 283 1.750399 GATTCCGTGGGCTGTGCAT 60.750 57.895 0.00 0.00 0.00 3.96
283 284 0.463654 GATTCCGTGGGCTGTGCATA 60.464 55.000 0.00 0.00 0.00 3.14
284 285 0.748005 ATTCCGTGGGCTGTGCATAC 60.748 55.000 0.00 0.00 0.00 2.39
285 286 2.046411 CCGTGGGCTGTGCATACA 60.046 61.111 0.00 0.00 35.08 2.29
286 287 1.451927 CCGTGGGCTGTGCATACAT 60.452 57.895 0.00 0.00 35.97 2.29
287 288 1.717791 CCGTGGGCTGTGCATACATG 61.718 60.000 0.00 0.00 35.97 3.21
304 305 7.369803 CATACATGCCACAATAATAGTCTCC 57.630 40.000 0.00 0.00 0.00 3.71
312 313 5.295292 CCACAATAATAGTCTCCTTGTGCAG 59.705 44.000 7.93 0.00 43.22 4.41
314 315 4.696479 ATAATAGTCTCCTTGTGCAGGG 57.304 45.455 0.00 0.00 44.12 4.45
331 332 3.897505 GCAGGGTATTTGATTTAGGGCAT 59.102 43.478 0.00 0.00 0.00 4.40
332 333 5.076873 GCAGGGTATTTGATTTAGGGCATA 58.923 41.667 0.00 0.00 0.00 3.14
333 334 5.538433 GCAGGGTATTTGATTTAGGGCATAA 59.462 40.000 0.00 0.00 0.00 1.90
336 337 7.287696 CAGGGTATTTGATTTAGGGCATAAACT 59.712 37.037 6.48 0.00 36.20 2.66
337 338 7.287696 AGGGTATTTGATTTAGGGCATAAACTG 59.712 37.037 6.48 0.00 36.20 3.16
412 416 5.903764 TGTGTGAAATGTTTATTTGCTGC 57.096 34.783 0.00 0.00 36.66 5.25
414 418 5.990386 TGTGTGAAATGTTTATTTGCTGCAT 59.010 32.000 1.84 0.00 36.66 3.96
473 477 8.306313 TGAGAATATTAGTAGTCTTTGAGGCA 57.694 34.615 0.00 0.00 35.54 4.75
525 529 3.665971 CCCTGGCCCCTTTGCTCT 61.666 66.667 0.00 0.00 0.00 4.09
582 594 3.054802 ACAGGTAATGCCTCTCCTCTTTG 60.055 47.826 0.00 0.00 46.96 2.77
587 599 1.734655 TGCCTCTCCTCTTTGGACTT 58.265 50.000 0.00 0.00 40.56 3.01
668 680 7.840342 ACTCTTTTACTCTTCACAGCATATG 57.160 36.000 0.00 0.00 0.00 1.78
731 743 4.873259 TCATGCATTTGAAGCCATTTGATG 59.127 37.500 0.00 0.00 0.00 3.07
810 822 7.665559 TCTTTTATGACATACCTTTGCTTCTGT 59.334 33.333 0.00 0.00 0.00 3.41
839 851 3.737774 GCTTTTCAAACCATCTGCTTGAC 59.262 43.478 0.00 0.00 0.00 3.18
843 855 2.886523 TCAAACCATCTGCTTGACCTTG 59.113 45.455 0.00 0.00 0.00 3.61
912 924 6.319658 TGAAGCCATTTACTTGATTCTCATCC 59.680 38.462 0.00 0.00 0.00 3.51
924 936 4.649218 TGATTCTCATCCTGGATGAACGTA 59.351 41.667 32.67 19.76 46.51 3.57
925 937 4.655762 TTCTCATCCTGGATGAACGTAG 57.344 45.455 32.67 22.99 46.51 3.51
926 938 2.362397 TCTCATCCTGGATGAACGTAGC 59.638 50.000 32.67 0.00 46.51 3.58
927 939 1.067060 TCATCCTGGATGAACGTAGCG 59.933 52.381 31.80 7.61 44.70 4.26
928 940 1.112113 ATCCTGGATGAACGTAGCGT 58.888 50.000 8.75 0.00 43.97 5.07
953 965 3.059733 GCATCATGATTTGACGAGCTCTC 60.060 47.826 12.85 9.01 37.11 3.20
962 974 1.270826 TGACGAGCTCTCTCTGGTTTG 59.729 52.381 12.85 0.00 37.19 2.93
995 1007 3.023119 GAGAAGAGATCCACTGAGCTGA 58.977 50.000 0.00 0.00 37.36 4.26
1048 1060 0.179197 GATCGAGAACACGACGAGCA 60.179 55.000 0.00 0.00 44.84 4.26
1050 1062 1.797933 CGAGAACACGACGAGCAGG 60.798 63.158 0.00 0.00 35.09 4.85
1080 1092 3.089874 TCCAAGAGGCGGATGGGG 61.090 66.667 5.81 0.00 34.89 4.96
1116 1128 0.250901 ACGAGCTGGCCATTCTTTGT 60.251 50.000 5.51 7.00 0.00 2.83
1237 1249 5.164620 TCAACCACTGCATATTTCTCTGA 57.835 39.130 0.00 0.00 0.00 3.27
1280 1292 0.252193 TTGGCTTGAGGGGAAATGGG 60.252 55.000 0.00 0.00 0.00 4.00
1287 1299 4.225042 GCTTGAGGGGAAATGGGTATTTTT 59.775 41.667 0.00 0.00 36.66 1.94
1297 1309 9.108284 GGGAAATGGGTATTTTTGATATTGTTG 57.892 33.333 0.00 0.00 36.66 3.33
1320 1332 6.878317 TGAGGTCTCATAATGTTGTTCTAGG 58.122 40.000 0.00 0.00 34.14 3.02
1363 1391 7.013655 AGTCTTGCAGTTTTTCTCAATGTGTAT 59.986 33.333 0.00 0.00 0.00 2.29
1445 1475 7.478667 GCACGTTTTAGTAATGAAGTCAAGATG 59.521 37.037 0.00 0.00 0.00 2.90
1525 1555 0.820871 TTTTTGTGTGTGGCAGGACC 59.179 50.000 0.00 0.00 39.84 4.46
1542 1572 1.336755 GACCGCAAACACCAGTTCAAT 59.663 47.619 0.00 0.00 36.84 2.57
1549 1579 3.896648 AACACCAGTTCAATTACTGCG 57.103 42.857 3.23 0.26 43.31 5.18
1639 1669 6.307776 TGTTCAGGTCCCATAATGTTTGTTA 58.692 36.000 0.00 0.00 0.00 2.41
1666 1696 6.018994 AGAGTTGTCATGACGTTCTTTTGTAC 60.019 38.462 20.54 6.19 0.00 2.90
1681 1711 6.211515 TCTTTTGTACGTCCAGTTAGTCTTC 58.788 40.000 0.00 0.00 0.00 2.87
1758 1788 5.702670 CCAACTTCTCTTGTTGCTAATCTGA 59.297 40.000 0.00 0.00 42.25 3.27
1806 1836 9.897744 GATCAATTTGAAAGTATGTGAAGAACA 57.102 29.630 2.68 0.00 44.79 3.18
1808 1838 7.862372 TCAATTTGAAAGTATGTGAAGAACAGC 59.138 33.333 0.00 0.00 43.64 4.40
1827 1857 2.158696 AGCTGATGATCAACTAAGCCCC 60.159 50.000 14.88 0.00 0.00 5.80
1829 1859 1.230324 GATGATCAACTAAGCCCCGC 58.770 55.000 0.00 0.00 0.00 6.13
1883 1913 4.021719 AGGATTGCAAACATCTTTGACAGG 60.022 41.667 1.71 0.00 39.43 4.00
1947 1977 2.038557 CAGCAGGTACACCAGTTTAGGT 59.961 50.000 0.38 0.00 44.48 3.08
1948 1978 2.302157 AGCAGGTACACCAGTTTAGGTC 59.698 50.000 0.38 0.00 40.77 3.85
1952 1982 4.514066 CAGGTACACCAGTTTAGGTCAAAC 59.486 45.833 0.38 0.00 45.85 2.93
1968 1998 7.141100 AGGTCAAACCAATTAACATCGTTAG 57.859 36.000 0.00 0.00 41.95 2.34
1972 2005 8.898792 GTCAAACCAATTAACATCGTTAGTTTC 58.101 33.333 0.00 0.00 0.00 2.78
1984 2017 8.302965 ACATCGTTAGTTTCTACTGGTTTTAC 57.697 34.615 0.00 0.00 35.78 2.01
2046 2079 4.478206 TGAGATGACAAGGATGAAGGAC 57.522 45.455 0.00 0.00 0.00 3.85
2151 2184 0.459489 AGCAGCAGATCGAGTTCTCC 59.541 55.000 0.00 0.00 0.00 3.71
2154 2187 1.066908 CAGCAGATCGAGTTCTCCCTC 59.933 57.143 0.00 0.00 0.00 4.30
2160 2193 4.399618 CAGATCGAGTTCTCCCTCTACAAA 59.600 45.833 0.00 0.00 0.00 2.83
2221 2254 9.686683 ATGCAACAGTTCTATAGGTTCTTTTAT 57.313 29.630 0.00 0.00 0.00 1.40
2249 2282 6.763355 TCTATATGAAACTCTGCATTCCTCC 58.237 40.000 0.00 0.00 0.00 4.30
2341 2374 1.369625 CCAGAGGGTATGCGAAACAC 58.630 55.000 0.00 0.00 0.00 3.32
2359 2392 2.819019 ACACGATGCATTGATTTGTCCA 59.181 40.909 21.12 0.00 0.00 4.02
2369 2402 3.438216 TGATTTGTCCAGCATTCCTGA 57.562 42.857 0.00 0.00 44.64 3.86
2448 2481 6.457355 TGATGGAGTTTTGTGGATTTCATTG 58.543 36.000 0.00 0.00 0.00 2.82
2479 2515 0.392193 GCACATGTCAGAGGACCAGG 60.392 60.000 0.00 0.00 43.65 4.45
2528 2564 7.550906 GGTAACACATCTCAGCTTAATTTCTCT 59.449 37.037 0.00 0.00 0.00 3.10
2530 2566 7.375106 ACACATCTCAGCTTAATTTCTCTTG 57.625 36.000 0.00 0.00 0.00 3.02
2531 2567 7.164122 ACACATCTCAGCTTAATTTCTCTTGA 58.836 34.615 0.00 0.00 0.00 3.02
2532 2568 7.333921 ACACATCTCAGCTTAATTTCTCTTGAG 59.666 37.037 0.00 0.00 0.00 3.02
2533 2569 7.548427 CACATCTCAGCTTAATTTCTCTTGAGA 59.452 37.037 4.04 4.04 34.92 3.27
2534 2570 8.266473 ACATCTCAGCTTAATTTCTCTTGAGAT 58.734 33.333 7.95 7.95 40.07 2.75
2536 2572 6.538021 TCTCAGCTTAATTTCTCTTGAGATGC 59.462 38.462 0.82 1.16 30.72 3.91
2538 2574 6.883217 TCAGCTTAATTTCTCTTGAGATGCTT 59.117 34.615 0.82 0.00 30.72 3.91
2539 2575 7.392673 TCAGCTTAATTTCTCTTGAGATGCTTT 59.607 33.333 0.82 0.00 30.72 3.51
2540 2576 7.697291 CAGCTTAATTTCTCTTGAGATGCTTTC 59.303 37.037 0.82 0.00 0.00 2.62
2544 2583 3.667497 TCTCTTGAGATGCTTTCGTGT 57.333 42.857 0.00 0.00 0.00 4.49
2573 2612 9.439500 CAATTTATTCACCCTTGATGAATTTGT 57.561 29.630 5.61 0.00 42.81 2.83
2818 2857 2.228103 CGCCTCTGGTAAGCATCGTATA 59.772 50.000 0.00 0.00 0.00 1.47
2819 2858 3.119459 CGCCTCTGGTAAGCATCGTATAT 60.119 47.826 0.00 0.00 0.00 0.86
2820 2859 4.425520 GCCTCTGGTAAGCATCGTATATC 58.574 47.826 0.00 0.00 0.00 1.63
2822 2861 5.394663 GCCTCTGGTAAGCATCGTATATCAT 60.395 44.000 0.00 0.00 0.00 2.45
2823 2862 6.183360 GCCTCTGGTAAGCATCGTATATCATA 60.183 42.308 0.00 0.00 0.00 2.15
2824 2863 7.470702 GCCTCTGGTAAGCATCGTATATCATAT 60.471 40.741 0.00 0.00 0.00 1.78
2825 2864 7.864882 CCTCTGGTAAGCATCGTATATCATATG 59.135 40.741 0.00 0.00 0.00 1.78
2826 2865 7.203218 TCTGGTAAGCATCGTATATCATATGC 58.797 38.462 0.00 7.61 43.97 3.14
2849 2888 1.062525 GCGTCATTGGAATCCGTGC 59.937 57.895 0.00 0.00 0.00 5.34
2873 2912 0.667792 GTTCGTCTGACCTGACCAGC 60.668 60.000 1.55 0.00 33.70 4.85
2903 2958 2.045045 TGCCTGCAGATTTCGGGG 60.045 61.111 17.39 0.00 0.00 5.73
2909 2964 2.717485 CAGATTTCGGGGCATGCG 59.283 61.111 12.44 0.00 0.00 4.73
2911 2966 4.612536 GATTTCGGGGCATGCGCG 62.613 66.667 26.19 20.83 39.92 6.86
2927 2982 1.517257 GCGATGGACCTGACAGACG 60.517 63.158 3.32 1.56 0.00 4.18
2960 3016 1.140452 GATGATGAGCAGAGCTTCCCA 59.860 52.381 0.00 0.00 39.88 4.37
2983 3039 0.391661 TGAATCTGCTCTGGAACGGC 60.392 55.000 0.00 0.00 32.53 5.68
2991 3047 1.347320 CTCTGGAACGGCGTTCTAAC 58.653 55.000 40.71 28.92 41.70 2.34
2996 3052 0.669625 GAACGGCGTTCTAACCAGCT 60.670 55.000 37.49 9.43 39.23 4.24
2997 3053 0.250166 AACGGCGTTCTAACCAGCTT 60.250 50.000 21.19 0.00 0.00 3.74
2998 3054 0.604578 ACGGCGTTCTAACCAGCTTA 59.395 50.000 6.77 0.00 0.00 3.09
3157 3224 0.034896 GATGTGTTGTGACCCGGAGT 59.965 55.000 0.73 0.00 0.00 3.85
3167 3234 2.192175 CCCGGAGTGGTTATGCCC 59.808 66.667 0.73 0.00 36.04 5.36
3191 3258 3.681417 GCATTGCTGTTCCCAAAGAAATC 59.319 43.478 0.16 0.00 35.85 2.17
3207 3274 4.833390 AGAAATCTGTGGCAAGTAGTACC 58.167 43.478 0.00 0.00 0.00 3.34
3290 3357 4.393062 GTGGAGACATCATGTGAAATTCGT 59.607 41.667 0.00 0.00 46.14 3.85
3331 3399 4.972440 GCAGCGTGAAAAGAAATATGATCC 59.028 41.667 0.00 0.00 0.00 3.36
3332 3400 5.200454 CAGCGTGAAAAGAAATATGATCCG 58.800 41.667 0.00 0.00 0.00 4.18
3333 3401 3.968724 GCGTGAAAAGAAATATGATCCGC 59.031 43.478 0.00 0.00 0.00 5.54
3334 3402 4.495679 GCGTGAAAAGAAATATGATCCGCA 60.496 41.667 0.00 0.00 36.54 5.69
3335 3403 5.751680 CGTGAAAAGAAATATGATCCGCAT 58.248 37.500 0.00 0.00 41.08 4.73
3336 3404 5.622448 CGTGAAAAGAAATATGATCCGCATG 59.378 40.000 0.00 0.00 37.87 4.06
3337 3405 6.511605 CGTGAAAAGAAATATGATCCGCATGA 60.512 38.462 0.00 0.00 37.87 3.07
3338 3406 7.365741 GTGAAAAGAAATATGATCCGCATGAT 58.634 34.615 0.00 0.00 37.87 2.45
3339 3407 7.864379 GTGAAAAGAAATATGATCCGCATGATT 59.136 33.333 0.00 0.00 37.87 2.57
3340 3408 8.077991 TGAAAAGAAATATGATCCGCATGATTC 58.922 33.333 0.00 0.00 37.87 2.52
3341 3409 6.506500 AAGAAATATGATCCGCATGATTCC 57.493 37.500 0.00 0.00 37.87 3.01
3342 3410 5.563592 AGAAATATGATCCGCATGATTCCA 58.436 37.500 0.00 0.00 37.87 3.53
3343 3411 6.005823 AGAAATATGATCCGCATGATTCCAA 58.994 36.000 0.00 0.00 37.87 3.53
3344 3412 6.491062 AGAAATATGATCCGCATGATTCCAAA 59.509 34.615 0.00 0.00 37.87 3.28
3345 3413 5.892160 ATATGATCCGCATGATTCCAAAG 57.108 39.130 0.00 0.00 37.87 2.77
3346 3414 3.003394 TGATCCGCATGATTCCAAAGT 57.997 42.857 0.00 0.00 32.41 2.66
3347 3415 2.945008 TGATCCGCATGATTCCAAAGTC 59.055 45.455 0.00 0.00 32.41 3.01
3348 3416 1.368641 TCCGCATGATTCCAAAGTCG 58.631 50.000 0.00 0.00 0.00 4.18
3349 3417 1.086696 CCGCATGATTCCAAAGTCGT 58.913 50.000 0.00 0.00 0.00 4.34
3350 3418 2.093921 TCCGCATGATTCCAAAGTCGTA 60.094 45.455 0.00 0.00 0.00 3.43
3351 3419 2.285220 CCGCATGATTCCAAAGTCGTAG 59.715 50.000 0.00 0.00 0.00 3.51
3352 3420 2.930040 CGCATGATTCCAAAGTCGTAGT 59.070 45.455 0.00 0.00 0.00 2.73
3353 3421 4.109766 CGCATGATTCCAAAGTCGTAGTA 58.890 43.478 0.00 0.00 0.00 1.82
3354 3422 4.565166 CGCATGATTCCAAAGTCGTAGTAA 59.435 41.667 0.00 0.00 0.00 2.24
3355 3423 5.500290 CGCATGATTCCAAAGTCGTAGTAAC 60.500 44.000 0.00 0.00 0.00 2.50
3356 3424 5.350365 GCATGATTCCAAAGTCGTAGTAACA 59.650 40.000 0.00 0.00 0.00 2.41
3357 3425 6.128391 GCATGATTCCAAAGTCGTAGTAACAA 60.128 38.462 0.00 0.00 0.00 2.83
3358 3426 7.572353 GCATGATTCCAAAGTCGTAGTAACAAA 60.572 37.037 0.00 0.00 0.00 2.83
3359 3427 7.181143 TGATTCCAAAGTCGTAGTAACAAAC 57.819 36.000 0.00 0.00 0.00 2.93
3360 3428 6.762187 TGATTCCAAAGTCGTAGTAACAAACA 59.238 34.615 0.00 0.00 0.00 2.83
3361 3429 6.981762 TTCCAAAGTCGTAGTAACAAACAA 57.018 33.333 0.00 0.00 0.00 2.83
3362 3430 6.592798 TCCAAAGTCGTAGTAACAAACAAG 57.407 37.500 0.00 0.00 0.00 3.16
3363 3431 6.339730 TCCAAAGTCGTAGTAACAAACAAGA 58.660 36.000 0.00 0.00 0.00 3.02
3364 3432 6.817641 TCCAAAGTCGTAGTAACAAACAAGAA 59.182 34.615 0.00 0.00 0.00 2.52
3365 3433 7.333921 TCCAAAGTCGTAGTAACAAACAAGAAA 59.666 33.333 0.00 0.00 0.00 2.52
3366 3434 7.964011 CCAAAGTCGTAGTAACAAACAAGAAAA 59.036 33.333 0.00 0.00 0.00 2.29
3367 3435 9.498307 CAAAGTCGTAGTAACAAACAAGAAAAT 57.502 29.630 0.00 0.00 0.00 1.82
3368 3436 9.498307 AAAGTCGTAGTAACAAACAAGAAAATG 57.502 29.630 0.00 0.00 0.00 2.32
3369 3437 7.636326 AGTCGTAGTAACAAACAAGAAAATGG 58.364 34.615 0.00 0.00 0.00 3.16
3370 3438 7.496591 AGTCGTAGTAACAAACAAGAAAATGGA 59.503 33.333 0.00 0.00 0.00 3.41
3371 3439 8.124199 GTCGTAGTAACAAACAAGAAAATGGAA 58.876 33.333 0.00 0.00 0.00 3.53
3372 3440 8.842280 TCGTAGTAACAAACAAGAAAATGGAAT 58.158 29.630 0.00 0.00 0.00 3.01
3373 3441 9.458374 CGTAGTAACAAACAAGAAAATGGAATT 57.542 29.630 0.00 0.00 38.98 2.17
3390 3458 8.871686 AATGGAATTTTATTTTATGGCGAGTC 57.128 30.769 0.00 0.00 26.74 3.36
3391 3459 6.491394 TGGAATTTTATTTTATGGCGAGTCG 58.509 36.000 8.54 8.54 0.00 4.18
3392 3460 6.316640 TGGAATTTTATTTTATGGCGAGTCGA 59.683 34.615 18.61 0.00 0.00 4.20
3393 3461 7.012894 TGGAATTTTATTTTATGGCGAGTCGAT 59.987 33.333 18.61 4.15 0.00 3.59
3394 3462 7.860872 GGAATTTTATTTTATGGCGAGTCGATT 59.139 33.333 18.61 1.67 0.00 3.34
3395 3463 8.782533 AATTTTATTTTATGGCGAGTCGATTC 57.217 30.769 18.61 5.37 0.00 2.52
3396 3464 6.912203 TTTATTTTATGGCGAGTCGATTCA 57.088 33.333 18.61 11.22 0.00 2.57
3397 3465 7.490962 TTTATTTTATGGCGAGTCGATTCAT 57.509 32.000 18.61 17.24 0.00 2.57
3398 3466 8.596271 TTTATTTTATGGCGAGTCGATTCATA 57.404 30.769 18.61 16.28 0.00 2.15
3399 3467 6.712241 ATTTTATGGCGAGTCGATTCATAG 57.288 37.500 18.61 0.00 0.00 2.23
3400 3468 5.447624 TTTATGGCGAGTCGATTCATAGA 57.552 39.130 18.61 12.21 0.00 1.98
3401 3469 5.447624 TTATGGCGAGTCGATTCATAGAA 57.552 39.130 18.61 6.00 0.00 2.10
3402 3470 3.793797 TGGCGAGTCGATTCATAGAAA 57.206 42.857 18.61 0.00 0.00 2.52
3403 3471 4.118093 TGGCGAGTCGATTCATAGAAAA 57.882 40.909 18.61 0.00 0.00 2.29
3404 3472 4.693283 TGGCGAGTCGATTCATAGAAAAT 58.307 39.130 18.61 0.00 0.00 1.82
3405 3473 4.745125 TGGCGAGTCGATTCATAGAAAATC 59.255 41.667 18.61 0.00 0.00 2.17
3406 3474 4.985409 GGCGAGTCGATTCATAGAAAATCT 59.015 41.667 18.61 0.00 32.15 2.40
3407 3475 6.150318 GGCGAGTCGATTCATAGAAAATCTA 58.850 40.000 18.61 0.00 32.87 1.98
3408 3476 6.641314 GGCGAGTCGATTCATAGAAAATCTAA 59.359 38.462 18.61 0.00 31.96 2.10
3409 3477 7.169308 GGCGAGTCGATTCATAGAAAATCTAAA 59.831 37.037 18.61 0.00 31.96 1.85
3410 3478 8.704234 GCGAGTCGATTCATAGAAAATCTAAAT 58.296 33.333 18.61 0.00 31.96 1.40
3435 3503 8.906636 TCCTTATTCGAATATGTAATAGACGC 57.093 34.615 18.18 0.00 33.55 5.19
3436 3504 8.737175 TCCTTATTCGAATATGTAATAGACGCT 58.263 33.333 18.18 0.00 33.55 5.07
3437 3505 8.799091 CCTTATTCGAATATGTAATAGACGCTG 58.201 37.037 18.18 1.15 33.55 5.18
3438 3506 9.343103 CTTATTCGAATATGTAATAGACGCTGT 57.657 33.333 18.18 0.00 33.55 4.40
3439 3507 9.687210 TTATTCGAATATGTAATAGACGCTGTT 57.313 29.630 18.18 0.00 33.55 3.16
3440 3508 7.997107 TTCGAATATGTAATAGACGCTGTTT 57.003 32.000 0.00 0.00 33.55 2.83
3441 3509 7.389603 TCGAATATGTAATAGACGCTGTTTG 57.610 36.000 0.00 0.00 33.55 2.93
3442 3510 6.419710 TCGAATATGTAATAGACGCTGTTTGG 59.580 38.462 0.00 0.00 33.55 3.28
3443 3511 6.200286 CGAATATGTAATAGACGCTGTTTGGT 59.800 38.462 0.00 0.00 28.50 3.67
3444 3512 7.254319 CGAATATGTAATAGACGCTGTTTGGTT 60.254 37.037 0.00 0.00 28.50 3.67
3445 3513 5.545658 ATGTAATAGACGCTGTTTGGTTG 57.454 39.130 0.00 0.00 0.00 3.77
3446 3514 4.633175 TGTAATAGACGCTGTTTGGTTGA 58.367 39.130 0.00 0.00 0.00 3.18
3447 3515 5.057819 TGTAATAGACGCTGTTTGGTTGAA 58.942 37.500 0.00 0.00 0.00 2.69
3448 3516 5.703592 TGTAATAGACGCTGTTTGGTTGAAT 59.296 36.000 0.00 0.00 0.00 2.57
3449 3517 4.685169 ATAGACGCTGTTTGGTTGAATG 57.315 40.909 0.00 0.00 0.00 2.67
3450 3518 2.297701 AGACGCTGTTTGGTTGAATGT 58.702 42.857 0.00 0.00 0.00 2.71
3451 3519 2.033299 AGACGCTGTTTGGTTGAATGTG 59.967 45.455 0.00 0.00 0.00 3.21
3452 3520 1.066908 ACGCTGTTTGGTTGAATGTGG 59.933 47.619 0.00 0.00 0.00 4.17
3453 3521 1.501169 GCTGTTTGGTTGAATGTGGC 58.499 50.000 0.00 0.00 0.00 5.01
3454 3522 1.769733 CTGTTTGGTTGAATGTGGCG 58.230 50.000 0.00 0.00 0.00 5.69
3455 3523 1.066908 CTGTTTGGTTGAATGTGGCGT 59.933 47.619 0.00 0.00 0.00 5.68
3456 3524 1.202348 TGTTTGGTTGAATGTGGCGTG 60.202 47.619 0.00 0.00 0.00 5.34
3457 3525 0.249238 TTTGGTTGAATGTGGCGTGC 60.249 50.000 0.00 0.00 0.00 5.34
3458 3526 1.387295 TTGGTTGAATGTGGCGTGCA 61.387 50.000 0.00 0.00 0.00 4.57
3459 3527 1.361993 GGTTGAATGTGGCGTGCAA 59.638 52.632 0.00 0.00 0.00 4.08
3460 3528 0.249238 GGTTGAATGTGGCGTGCAAA 60.249 50.000 0.00 0.00 0.00 3.68
3461 3529 1.565305 GTTGAATGTGGCGTGCAAAA 58.435 45.000 0.00 0.00 0.00 2.44
3462 3530 1.929836 GTTGAATGTGGCGTGCAAAAA 59.070 42.857 0.00 0.00 0.00 1.94
3577 3645 9.833894 CGTCAACTAATTTTATTATTTGCATGC 57.166 29.630 11.82 11.82 0.00 4.06
3648 3716 9.686683 AGCCTATTTTAATCTGTGTATTTGTCT 57.313 29.630 0.00 0.00 0.00 3.41
3758 3826 8.560355 TTTTTCAGATTATTCCGAGATGTGAA 57.440 30.769 0.00 0.00 33.09 3.18
3759 3827 8.560355 TTTTCAGATTATTCCGAGATGTGAAA 57.440 30.769 4.43 4.43 39.65 2.69
3760 3828 8.560355 TTTCAGATTATTCCGAGATGTGAAAA 57.440 30.769 5.69 0.00 38.96 2.29
3761 3829 8.560355 TTCAGATTATTCCGAGATGTGAAAAA 57.440 30.769 0.00 0.00 32.33 1.94
3762 3830 8.201554 TCAGATTATTCCGAGATGTGAAAAAG 57.798 34.615 0.00 0.00 0.00 2.27
3763 3831 7.280876 TCAGATTATTCCGAGATGTGAAAAAGG 59.719 37.037 0.00 0.00 0.00 3.11
3764 3832 7.066284 CAGATTATTCCGAGATGTGAAAAAGGT 59.934 37.037 0.00 0.00 0.00 3.50
3765 3833 8.265055 AGATTATTCCGAGATGTGAAAAAGGTA 58.735 33.333 0.00 0.00 0.00 3.08
3766 3834 8.980481 ATTATTCCGAGATGTGAAAAAGGTAT 57.020 30.769 0.00 0.00 0.00 2.73
3767 3835 8.801882 TTATTCCGAGATGTGAAAAAGGTATT 57.198 30.769 0.00 0.00 0.00 1.89
3768 3836 7.703058 ATTCCGAGATGTGAAAAAGGTATTT 57.297 32.000 0.00 0.00 0.00 1.40
3769 3837 7.519032 TTCCGAGATGTGAAAAAGGTATTTT 57.481 32.000 0.00 0.00 40.37 1.82
3771 3839 7.367285 TCCGAGATGTGAAAAAGGTATTTTTG 58.633 34.615 3.60 0.00 46.18 2.44
3772 3840 6.089417 CCGAGATGTGAAAAAGGTATTTTTGC 59.911 38.462 3.60 0.00 46.18 3.68
3773 3841 6.863126 CGAGATGTGAAAAAGGTATTTTTGCT 59.137 34.615 3.60 0.00 46.18 3.91
3774 3842 7.148918 CGAGATGTGAAAAAGGTATTTTTGCTG 60.149 37.037 3.60 0.00 46.18 4.41
3775 3843 7.725251 AGATGTGAAAAAGGTATTTTTGCTGA 58.275 30.769 3.60 0.00 46.18 4.26
3776 3844 8.203485 AGATGTGAAAAAGGTATTTTTGCTGAA 58.797 29.630 3.60 0.00 46.18 3.02
3777 3845 8.729805 ATGTGAAAAAGGTATTTTTGCTGAAA 57.270 26.923 3.60 0.00 46.18 2.69
3778 3846 8.553459 TGTGAAAAAGGTATTTTTGCTGAAAA 57.447 26.923 3.60 1.95 46.18 2.29
3779 3847 9.171877 TGTGAAAAAGGTATTTTTGCTGAAAAT 57.828 25.926 13.35 13.35 46.18 1.82
3810 3878 2.791170 CTCAATGGAGCTTGGCCTC 58.209 57.895 3.32 0.00 33.67 4.70
3811 3879 0.255318 CTCAATGGAGCTTGGCCTCT 59.745 55.000 3.32 0.00 33.67 3.69
3812 3880 0.034767 TCAATGGAGCTTGGCCTCTG 60.035 55.000 3.32 0.00 32.43 3.35
3813 3881 1.379576 AATGGAGCTTGGCCTCTGC 60.380 57.895 3.32 5.63 32.43 4.26
3814 3882 2.146146 AATGGAGCTTGGCCTCTGCA 62.146 55.000 14.33 14.33 40.13 4.41
3815 3883 2.438075 GGAGCTTGGCCTCTGCAG 60.438 66.667 7.63 7.63 40.13 4.41
3816 3884 2.438075 GAGCTTGGCCTCTGCAGG 60.438 66.667 15.13 0.00 43.82 4.85
3825 3893 3.879912 CCTCTGCAGGCACTTTTTG 57.120 52.632 15.13 0.00 34.60 2.44
3849 3917 9.520204 TTGCTGCTGAAAATAATAATAAAGAGC 57.480 29.630 0.00 0.00 0.00 4.09
3850 3918 8.906867 TGCTGCTGAAAATAATAATAAAGAGCT 58.093 29.630 0.00 0.00 0.00 4.09
3851 3919 9.392021 GCTGCTGAAAATAATAATAAAGAGCTC 57.608 33.333 5.27 5.27 0.00 4.09
3869 3937 2.836262 CTCAATAGAGCTTGGCCTCTG 58.164 52.381 3.32 0.00 42.01 3.35
3870 3938 1.134280 TCAATAGAGCTTGGCCTCTGC 60.134 52.381 3.32 5.63 42.01 4.26
3871 3939 0.914644 AATAGAGCTTGGCCTCTGCA 59.085 50.000 3.32 0.00 42.01 4.41
3872 3940 0.469070 ATAGAGCTTGGCCTCTGCAG 59.531 55.000 7.63 7.63 42.01 4.41
3873 3941 1.620739 TAGAGCTTGGCCTCTGCAGG 61.621 60.000 15.13 0.00 42.01 4.85
3882 3950 1.871772 CCTCTGCAGGCACTTTTCG 59.128 57.895 15.13 0.00 34.60 3.46
3883 3951 1.208614 CTCTGCAGGCACTTTTCGC 59.791 57.895 15.13 0.00 34.60 4.70
3884 3952 1.227943 TCTGCAGGCACTTTTCGCT 60.228 52.632 15.13 0.00 34.60 4.93
3885 3953 1.081641 CTGCAGGCACTTTTCGCTG 60.082 57.895 5.57 0.00 34.60 5.18
3886 3954 1.789078 CTGCAGGCACTTTTCGCTGT 61.789 55.000 5.57 0.00 34.60 4.40
3887 3955 1.360192 GCAGGCACTTTTCGCTGTT 59.640 52.632 0.00 0.00 34.60 3.16
3888 3956 0.249031 GCAGGCACTTTTCGCTGTTT 60.249 50.000 0.00 0.00 34.60 2.83
3889 3957 1.480205 CAGGCACTTTTCGCTGTTTG 58.520 50.000 0.00 0.00 34.60 2.93
3890 3958 0.385390 AGGCACTTTTCGCTGTTTGG 59.615 50.000 0.00 0.00 27.25 3.28
3891 3959 0.102300 GGCACTTTTCGCTGTTTGGT 59.898 50.000 0.00 0.00 0.00 3.67
3892 3960 1.470805 GGCACTTTTCGCTGTTTGGTT 60.471 47.619 0.00 0.00 0.00 3.67
3893 3961 1.587946 GCACTTTTCGCTGTTTGGTTG 59.412 47.619 0.00 0.00 0.00 3.77
3894 3962 2.874849 CACTTTTCGCTGTTTGGTTGT 58.125 42.857 0.00 0.00 0.00 3.32
3895 3963 3.732471 GCACTTTTCGCTGTTTGGTTGTA 60.732 43.478 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.077212 CATGGCAAGGGAGGTGAGG 60.077 63.158 0.00 0.00 0.00 3.86
60 61 1.685224 GACATGGCAAGGGAGGTGA 59.315 57.895 0.00 0.00 0.00 4.02
213 214 1.981256 AATTAGCACCATTAGGGCGG 58.019 50.000 0.00 0.00 42.05 6.13
261 262 1.090052 GCACAGCCCACGGAATCTAC 61.090 60.000 0.00 0.00 0.00 2.59
267 268 1.909459 ATGTATGCACAGCCCACGGA 61.909 55.000 0.00 0.00 38.30 4.69
268 269 1.451927 ATGTATGCACAGCCCACGG 60.452 57.895 0.00 0.00 38.30 4.94
279 280 8.225403 AGGAGACTATTATTGTGGCATGTATGC 61.225 40.741 8.30 8.30 46.96 3.14
280 281 7.164122 AGGAGACTATTATTGTGGCATGTATG 58.836 38.462 0.00 0.00 40.61 2.39
281 282 7.321717 AGGAGACTATTATTGTGGCATGTAT 57.678 36.000 0.00 0.00 40.61 2.29
282 283 6.747414 AGGAGACTATTATTGTGGCATGTA 57.253 37.500 0.00 0.00 40.61 2.29
283 284 5.636903 AGGAGACTATTATTGTGGCATGT 57.363 39.130 0.00 0.00 40.61 3.21
284 285 5.824624 ACAAGGAGACTATTATTGTGGCATG 59.175 40.000 0.00 0.00 42.68 4.06
285 286 5.824624 CACAAGGAGACTATTATTGTGGCAT 59.175 40.000 8.17 0.00 44.32 4.40
286 287 5.185454 CACAAGGAGACTATTATTGTGGCA 58.815 41.667 8.17 0.00 44.32 4.92
287 288 4.035675 GCACAAGGAGACTATTATTGTGGC 59.964 45.833 15.67 6.72 46.75 5.01
288 289 5.185454 TGCACAAGGAGACTATTATTGTGG 58.815 41.667 15.67 1.57 46.75 4.17
303 304 4.806640 AAATCAAATACCCTGCACAAGG 57.193 40.909 0.00 0.00 46.94 3.61
304 305 5.163519 CCCTAAATCAAATACCCTGCACAAG 60.164 44.000 0.00 0.00 0.00 3.16
312 313 7.433680 CAGTTTATGCCCTAAATCAAATACCC 58.566 38.462 0.00 0.00 32.12 3.69
331 332 4.394729 CCAACTTAACCTCCTGCAGTTTA 58.605 43.478 13.81 1.81 0.00 2.01
332 333 3.222603 CCAACTTAACCTCCTGCAGTTT 58.777 45.455 13.81 2.80 0.00 2.66
333 334 2.863809 CCAACTTAACCTCCTGCAGTT 58.136 47.619 13.81 3.47 0.00 3.16
336 337 0.251165 GGCCAACTTAACCTCCTGCA 60.251 55.000 0.00 0.00 0.00 4.41
337 338 0.251165 TGGCCAACTTAACCTCCTGC 60.251 55.000 0.61 0.00 0.00 4.85
338 339 1.202879 TGTGGCCAACTTAACCTCCTG 60.203 52.381 7.24 0.00 0.00 3.86
339 340 1.145571 TGTGGCCAACTTAACCTCCT 58.854 50.000 7.24 0.00 0.00 3.69
340 341 2.215942 ATGTGGCCAACTTAACCTCC 57.784 50.000 7.24 0.00 0.00 4.30
374 378 9.918630 CATTTCACACAATAAGGAAAAGAGAAT 57.081 29.630 0.00 0.00 33.47 2.40
392 396 6.221659 TGATGCAGCAAATAAACATTTCACA 58.778 32.000 0.00 0.00 0.00 3.58
393 397 6.366877 ACTGATGCAGCAAATAAACATTTCAC 59.633 34.615 5.96 0.00 34.37 3.18
412 416 4.774726 AGGCTGTCCCACTATATACTGATG 59.225 45.833 0.00 0.00 35.39 3.07
414 418 4.141018 TCAGGCTGTCCCACTATATACTGA 60.141 45.833 15.27 0.00 35.39 3.41
473 477 8.697507 ATAAGTCTGGAAAGTTCTTGTTTCAT 57.302 30.769 0.00 0.00 35.90 2.57
525 529 1.366082 TCTTCAGAAGATGGAGGGGGA 59.634 52.381 8.95 0.00 34.91 4.81
582 594 3.130340 CAGAGCAAGAGAGGTAGAAGTCC 59.870 52.174 0.00 0.00 0.00 3.85
587 599 2.098614 CTGCAGAGCAAGAGAGGTAGA 58.901 52.381 8.42 0.00 38.41 2.59
668 680 5.023533 TGTATGCATAGACAGGAGAAACC 57.976 43.478 6.67 0.00 39.35 3.27
731 743 1.210155 GAATCCAAGCACCACGCAC 59.790 57.895 0.00 0.00 46.13 5.34
912 924 1.864435 GCCTACGCTACGTTCATCCAG 60.864 57.143 0.00 0.00 41.54 3.86
924 936 2.874701 GTCAAATCATGATGCCTACGCT 59.125 45.455 9.46 0.00 40.97 5.07
925 937 2.348872 CGTCAAATCATGATGCCTACGC 60.349 50.000 9.46 0.00 40.97 4.42
926 938 3.123050 TCGTCAAATCATGATGCCTACG 58.877 45.455 9.46 15.89 43.53 3.51
927 939 3.059325 GCTCGTCAAATCATGATGCCTAC 60.059 47.826 9.46 4.98 43.53 3.18
928 940 3.133691 GCTCGTCAAATCATGATGCCTA 58.866 45.455 9.46 0.00 43.53 3.93
953 965 3.012518 CCTCCTATGCAACAAACCAGAG 58.987 50.000 0.00 0.00 0.00 3.35
962 974 4.262420 GGATCTCTTCTCCTCCTATGCAAC 60.262 50.000 0.00 0.00 0.00 4.17
995 1007 3.521765 TTCCCACGCCCCATTGCTT 62.522 57.895 0.00 0.00 0.00 3.91
1048 1060 0.768221 TTGGAGAAGGTGACCTGCCT 60.768 55.000 4.15 5.61 38.11 4.75
1050 1062 0.687354 TCTTGGAGAAGGTGACCTGC 59.313 55.000 4.15 1.86 32.13 4.85
1080 1092 0.386478 CGTTTGCCTTCTTGAGCAGC 60.386 55.000 0.00 0.00 40.73 5.25
1116 1128 3.965258 ACCCCAACCTGCGCATCA 61.965 61.111 12.24 0.00 0.00 3.07
1237 1249 6.483405 AGAGGAGCAGAGAAAGATCAAATTT 58.517 36.000 0.00 0.00 0.00 1.82
1287 1299 9.112725 CAACATTATGAGACCTCAACAATATCA 57.887 33.333 3.62 0.00 43.58 2.15
1297 1309 6.127026 ACCCTAGAACAACATTATGAGACCTC 60.127 42.308 0.00 0.00 0.00 3.85
1320 1332 5.106908 GCAAGACTAACTGAATCTGACAACC 60.107 44.000 0.00 0.00 0.00 3.77
1402 1431 3.436704 ACGTGCAGATTATCAACAACAGG 59.563 43.478 0.00 0.00 0.00 4.00
1445 1475 9.680946 GTCGGTTCTTCGTATACTTTTAAATTC 57.319 33.333 0.56 0.00 0.00 2.17
1525 1555 3.974401 CAGTAATTGAACTGGTGTTTGCG 59.026 43.478 1.03 0.00 42.63 4.85
1542 1572 2.232756 TTGCAGAGAACACGCAGTAA 57.767 45.000 0.00 0.00 41.61 2.24
1549 1579 2.898705 AGATCGGATTGCAGAGAACAC 58.101 47.619 0.00 0.00 0.00 3.32
1639 1669 6.706270 ACAAAAGAACGTCATGACAACTCTAT 59.294 34.615 24.93 12.05 0.00 1.98
1666 1696 2.029828 ACTGCAGAAGACTAACTGGACG 60.030 50.000 23.35 0.00 35.05 4.79
1669 1699 5.529060 AGAAAAACTGCAGAAGACTAACTGG 59.471 40.000 23.35 0.00 35.05 4.00
1681 1711 7.810658 AGTATACACATTGAGAAAAACTGCAG 58.189 34.615 13.48 13.48 0.00 4.41
1743 1773 7.352739 ACTAAAACGTTCAGATTAGCAACAAG 58.647 34.615 14.48 0.00 0.00 3.16
1797 1827 4.694509 AGTTGATCATCAGCTGTTCTTCAC 59.305 41.667 14.67 4.24 36.56 3.18
1806 1836 2.158696 GGGGCTTAGTTGATCATCAGCT 60.159 50.000 9.22 9.22 40.97 4.24
1808 1838 2.487934 CGGGGCTTAGTTGATCATCAG 58.512 52.381 6.55 0.00 0.00 2.90
1839 1869 2.426738 TGCCACACACAAAAAGGAGAAG 59.573 45.455 0.00 0.00 0.00 2.85
1883 1913 1.378646 GCTGGGGGCTTTCAGGTAC 60.379 63.158 0.00 0.00 38.06 3.34
1947 1977 8.842280 AGAAACTAACGATGTTAATTGGTTTGA 58.158 29.630 5.33 0.00 37.21 2.69
1952 1982 8.388103 CCAGTAGAAACTAACGATGTTAATTGG 58.612 37.037 0.00 0.00 33.48 3.16
2151 2184 3.194968 TCCTAAGGCGAACTTTGTAGAGG 59.805 47.826 0.00 0.15 40.64 3.69
2154 2187 3.933332 CCTTCCTAAGGCGAACTTTGTAG 59.067 47.826 0.00 0.00 42.78 2.74
2221 2254 8.928448 AGGAATGCAGAGTTTCATATAGAGTAA 58.072 33.333 0.00 0.00 0.00 2.24
2223 2256 7.372260 AGGAATGCAGAGTTTCATATAGAGT 57.628 36.000 0.00 0.00 0.00 3.24
2225 2258 6.517362 CGGAGGAATGCAGAGTTTCATATAGA 60.517 42.308 0.00 0.00 0.00 1.98
2226 2259 5.636965 CGGAGGAATGCAGAGTTTCATATAG 59.363 44.000 0.00 0.00 0.00 1.31
2227 2260 5.070446 ACGGAGGAATGCAGAGTTTCATATA 59.930 40.000 0.00 0.00 0.00 0.86
2313 2346 1.476007 ATACCCTCTGGCGCATCTCC 61.476 60.000 10.83 0.00 33.59 3.71
2341 2374 2.159352 TGCTGGACAAATCAATGCATCG 60.159 45.455 0.00 0.00 0.00 3.84
2359 2392 5.128919 GTGATAAAGGATGTCAGGAATGCT 58.871 41.667 0.00 0.00 28.82 3.79
2369 2402 6.314917 AGAAAAAGGGTGTGATAAAGGATGT 58.685 36.000 0.00 0.00 0.00 3.06
2448 2481 2.005451 GACATGTGCATCTCCTGTCAC 58.995 52.381 1.15 0.00 36.94 3.67
2479 2515 0.677731 TGGAACATGTAGCTGCTGCC 60.678 55.000 13.43 3.20 40.80 4.85
2528 2564 1.946081 TGCAACACGAAAGCATCTCAA 59.054 42.857 0.00 0.00 32.55 3.02
2530 2566 2.686558 TTGCAACACGAAAGCATCTC 57.313 45.000 0.00 0.00 38.19 2.75
2531 2567 3.648339 AATTGCAACACGAAAGCATCT 57.352 38.095 0.00 0.00 38.19 2.90
2532 2568 6.089283 TGAATAAATTGCAACACGAAAGCATC 59.911 34.615 0.00 0.00 38.19 3.91
2533 2569 5.925397 TGAATAAATTGCAACACGAAAGCAT 59.075 32.000 0.00 0.00 38.19 3.79
2534 2570 5.174761 GTGAATAAATTGCAACACGAAAGCA 59.825 36.000 0.00 0.00 36.32 3.91
2536 2572 5.118510 GGGTGAATAAATTGCAACACGAAAG 59.881 40.000 0.00 0.00 0.00 2.62
2538 2574 4.279671 AGGGTGAATAAATTGCAACACGAA 59.720 37.500 0.00 0.00 0.00 3.85
2539 2575 3.823873 AGGGTGAATAAATTGCAACACGA 59.176 39.130 0.00 0.00 0.00 4.35
2540 2576 4.173036 AGGGTGAATAAATTGCAACACG 57.827 40.909 0.00 0.00 0.00 4.49
2544 2583 6.602410 TCATCAAGGGTGAATAAATTGCAA 57.398 33.333 0.00 0.00 37.30 4.08
2620 2659 3.186047 GTTCATCACGTCGGCCGG 61.186 66.667 27.83 13.23 42.24 6.13
2664 2703 2.728817 CCGTAGATCTGGTCGCCC 59.271 66.667 5.18 0.00 0.00 6.13
2818 2857 1.841302 ATGACGCCCCCGCATATGAT 61.841 55.000 6.97 0.00 38.22 2.45
2819 2858 2.050836 AATGACGCCCCCGCATATGA 62.051 55.000 6.97 0.00 38.22 2.15
2820 2859 1.600636 AATGACGCCCCCGCATATG 60.601 57.895 0.00 0.00 38.22 1.78
2822 2861 2.203139 CAATGACGCCCCCGCATA 60.203 61.111 0.00 0.00 38.22 3.14
2826 2865 2.124320 ATTCCAATGACGCCCCCG 60.124 61.111 0.00 0.00 41.14 5.73
2827 2866 1.828224 GGATTCCAATGACGCCCCC 60.828 63.158 0.00 0.00 0.00 5.40
2849 2888 0.318699 TCAGGTCAGACGAACTTGCG 60.319 55.000 0.00 0.00 36.93 4.85
2873 2912 1.521010 CAGGCAGAGACGGATGCAG 60.521 63.158 0.00 0.00 44.37 4.41
2903 2958 3.945434 CAGGTCCATCGCGCATGC 61.945 66.667 7.91 7.91 37.91 4.06
2909 2964 1.517257 CGTCTGTCAGGTCCATCGC 60.517 63.158 0.00 0.00 0.00 4.58
2911 2966 1.103803 TAGCGTCTGTCAGGTCCATC 58.896 55.000 0.00 0.00 0.00 3.51
2927 2982 3.617045 GCTCATCATCCTCCATCAGTAGC 60.617 52.174 0.00 0.00 0.00 3.58
2960 3016 2.094286 CGTTCCAGAGCAGATTCAGACT 60.094 50.000 0.00 0.00 0.00 3.24
2983 3039 9.477484 AGATAATGTAATAAGCTGGTTAGAACG 57.523 33.333 5.49 0.00 0.00 3.95
2991 3047 8.607441 TGCAGTAAGATAATGTAATAAGCTGG 57.393 34.615 0.00 0.00 0.00 4.85
3167 3234 1.614903 TCTTTGGGAACAGCAATGCAG 59.385 47.619 8.35 0.89 44.54 4.41
3191 3258 6.420913 AATATAGGGTACTACTTGCCACAG 57.579 41.667 0.00 0.00 30.59 3.66
3331 3399 2.930040 ACTACGACTTTGGAATCATGCG 59.070 45.455 0.00 0.00 0.00 4.73
3332 3400 5.350365 TGTTACTACGACTTTGGAATCATGC 59.650 40.000 0.00 0.00 0.00 4.06
3333 3401 6.961359 TGTTACTACGACTTTGGAATCATG 57.039 37.500 0.00 0.00 0.00 3.07
3334 3402 7.442969 TGTTTGTTACTACGACTTTGGAATCAT 59.557 33.333 0.00 0.00 0.00 2.45
3335 3403 6.762187 TGTTTGTTACTACGACTTTGGAATCA 59.238 34.615 0.00 0.00 0.00 2.57
3336 3404 7.181143 TGTTTGTTACTACGACTTTGGAATC 57.819 36.000 0.00 0.00 0.00 2.52
3337 3405 7.496591 TCTTGTTTGTTACTACGACTTTGGAAT 59.503 33.333 0.00 0.00 0.00 3.01
3338 3406 6.817641 TCTTGTTTGTTACTACGACTTTGGAA 59.182 34.615 0.00 0.00 0.00 3.53
3339 3407 6.339730 TCTTGTTTGTTACTACGACTTTGGA 58.660 36.000 0.00 0.00 0.00 3.53
3340 3408 6.592798 TCTTGTTTGTTACTACGACTTTGG 57.407 37.500 0.00 0.00 0.00 3.28
3341 3409 8.883789 TTTTCTTGTTTGTTACTACGACTTTG 57.116 30.769 0.00 0.00 0.00 2.77
3342 3410 9.498307 CATTTTCTTGTTTGTTACTACGACTTT 57.502 29.630 0.00 0.00 0.00 2.66
3343 3411 8.126700 CCATTTTCTTGTTTGTTACTACGACTT 58.873 33.333 0.00 0.00 0.00 3.01
3344 3412 7.496591 TCCATTTTCTTGTTTGTTACTACGACT 59.503 33.333 0.00 0.00 0.00 4.18
3345 3413 7.632721 TCCATTTTCTTGTTTGTTACTACGAC 58.367 34.615 0.00 0.00 0.00 4.34
3346 3414 7.789273 TCCATTTTCTTGTTTGTTACTACGA 57.211 32.000 0.00 0.00 0.00 3.43
3347 3415 9.458374 AATTCCATTTTCTTGTTTGTTACTACG 57.542 29.630 0.00 0.00 0.00 3.51
3361 3429 9.883142 TCGCCATAAAATAAAATTCCATTTTCT 57.117 25.926 11.27 2.92 41.26 2.52
3363 3431 9.665719 ACTCGCCATAAAATAAAATTCCATTTT 57.334 25.926 12.16 12.16 44.13 1.82
3364 3432 9.313118 GACTCGCCATAAAATAAAATTCCATTT 57.687 29.630 0.00 0.00 0.00 2.32
3365 3433 7.647715 CGACTCGCCATAAAATAAAATTCCATT 59.352 33.333 0.00 0.00 0.00 3.16
3366 3434 7.012894 TCGACTCGCCATAAAATAAAATTCCAT 59.987 33.333 0.00 0.00 0.00 3.41
3367 3435 6.316640 TCGACTCGCCATAAAATAAAATTCCA 59.683 34.615 0.00 0.00 0.00 3.53
3368 3436 6.721321 TCGACTCGCCATAAAATAAAATTCC 58.279 36.000 0.00 0.00 0.00 3.01
3369 3437 8.782533 AATCGACTCGCCATAAAATAAAATTC 57.217 30.769 0.00 0.00 0.00 2.17
3370 3438 8.402472 TGAATCGACTCGCCATAAAATAAAATT 58.598 29.630 0.00 0.00 0.00 1.82
3371 3439 7.925993 TGAATCGACTCGCCATAAAATAAAAT 58.074 30.769 0.00 0.00 0.00 1.82
3372 3440 7.310072 TGAATCGACTCGCCATAAAATAAAA 57.690 32.000 0.00 0.00 0.00 1.52
3373 3441 6.912203 TGAATCGACTCGCCATAAAATAAA 57.088 33.333 0.00 0.00 0.00 1.40
3374 3442 8.085909 TCTATGAATCGACTCGCCATAAAATAA 58.914 33.333 0.00 0.00 0.00 1.40
3375 3443 7.599171 TCTATGAATCGACTCGCCATAAAATA 58.401 34.615 0.00 0.00 0.00 1.40
3376 3444 6.455647 TCTATGAATCGACTCGCCATAAAAT 58.544 36.000 0.00 0.00 0.00 1.82
3377 3445 5.838529 TCTATGAATCGACTCGCCATAAAA 58.161 37.500 0.00 0.00 0.00 1.52
3378 3446 5.447624 TCTATGAATCGACTCGCCATAAA 57.552 39.130 0.00 0.00 0.00 1.40
3379 3447 5.447624 TTCTATGAATCGACTCGCCATAA 57.552 39.130 0.00 0.00 0.00 1.90
3380 3448 5.447624 TTTCTATGAATCGACTCGCCATA 57.552 39.130 0.00 1.64 0.00 2.74
3381 3449 4.322080 TTTCTATGAATCGACTCGCCAT 57.678 40.909 0.00 0.56 0.00 4.40
3382 3450 3.793797 TTTCTATGAATCGACTCGCCA 57.206 42.857 0.00 0.00 0.00 5.69
3383 3451 4.985409 AGATTTTCTATGAATCGACTCGCC 59.015 41.667 0.00 0.00 38.29 5.54
3384 3452 7.624706 TTAGATTTTCTATGAATCGACTCGC 57.375 36.000 0.00 0.00 38.29 5.03
3409 3477 9.517609 GCGTCTATTACATATTCGAATAAGGAT 57.482 33.333 21.05 16.03 0.00 3.24
3410 3478 8.737175 AGCGTCTATTACATATTCGAATAAGGA 58.263 33.333 21.05 11.46 0.00 3.36
3411 3479 8.799091 CAGCGTCTATTACATATTCGAATAAGG 58.201 37.037 21.05 17.55 0.00 2.69
3412 3480 9.343103 ACAGCGTCTATTACATATTCGAATAAG 57.657 33.333 21.05 18.70 0.00 1.73
3413 3481 9.687210 AACAGCGTCTATTACATATTCGAATAA 57.313 29.630 21.05 7.69 0.00 1.40
3414 3482 9.687210 AAACAGCGTCTATTACATATTCGAATA 57.313 29.630 19.63 19.63 0.00 1.75
3415 3483 8.487970 CAAACAGCGTCTATTACATATTCGAAT 58.512 33.333 16.15 16.15 0.00 3.34
3416 3484 7.042992 CCAAACAGCGTCTATTACATATTCGAA 60.043 37.037 0.00 0.00 0.00 3.71
3417 3485 6.419710 CCAAACAGCGTCTATTACATATTCGA 59.580 38.462 0.00 0.00 0.00 3.71
3418 3486 6.200286 ACCAAACAGCGTCTATTACATATTCG 59.800 38.462 0.00 0.00 0.00 3.34
3419 3487 7.478520 ACCAAACAGCGTCTATTACATATTC 57.521 36.000 0.00 0.00 0.00 1.75
3420 3488 7.551262 TCAACCAAACAGCGTCTATTACATATT 59.449 33.333 0.00 0.00 0.00 1.28
3421 3489 7.045416 TCAACCAAACAGCGTCTATTACATAT 58.955 34.615 0.00 0.00 0.00 1.78
3422 3490 6.399743 TCAACCAAACAGCGTCTATTACATA 58.600 36.000 0.00 0.00 0.00 2.29
3423 3491 5.242434 TCAACCAAACAGCGTCTATTACAT 58.758 37.500 0.00 0.00 0.00 2.29
3424 3492 4.633175 TCAACCAAACAGCGTCTATTACA 58.367 39.130 0.00 0.00 0.00 2.41
3425 3493 5.600908 TTCAACCAAACAGCGTCTATTAC 57.399 39.130 0.00 0.00 0.00 1.89
3426 3494 5.703592 ACATTCAACCAAACAGCGTCTATTA 59.296 36.000 0.00 0.00 0.00 0.98
3427 3495 4.518970 ACATTCAACCAAACAGCGTCTATT 59.481 37.500 0.00 0.00 0.00 1.73
3428 3496 4.072131 ACATTCAACCAAACAGCGTCTAT 58.928 39.130 0.00 0.00 0.00 1.98
3429 3497 3.249799 CACATTCAACCAAACAGCGTCTA 59.750 43.478 0.00 0.00 0.00 2.59
3430 3498 2.033299 CACATTCAACCAAACAGCGTCT 59.967 45.455 0.00 0.00 0.00 4.18
3431 3499 2.384382 CACATTCAACCAAACAGCGTC 58.616 47.619 0.00 0.00 0.00 5.19
3432 3500 1.066908 CCACATTCAACCAAACAGCGT 59.933 47.619 0.00 0.00 0.00 5.07
3433 3501 1.769733 CCACATTCAACCAAACAGCG 58.230 50.000 0.00 0.00 0.00 5.18
3434 3502 1.501169 GCCACATTCAACCAAACAGC 58.499 50.000 0.00 0.00 0.00 4.40
3435 3503 1.066908 ACGCCACATTCAACCAAACAG 59.933 47.619 0.00 0.00 0.00 3.16
3436 3504 1.107114 ACGCCACATTCAACCAAACA 58.893 45.000 0.00 0.00 0.00 2.83
3437 3505 1.486439 CACGCCACATTCAACCAAAC 58.514 50.000 0.00 0.00 0.00 2.93
3438 3506 0.249238 GCACGCCACATTCAACCAAA 60.249 50.000 0.00 0.00 0.00 3.28
3439 3507 1.361993 GCACGCCACATTCAACCAA 59.638 52.632 0.00 0.00 0.00 3.67
3440 3508 1.387295 TTGCACGCCACATTCAACCA 61.387 50.000 0.00 0.00 0.00 3.67
3441 3509 0.249238 TTTGCACGCCACATTCAACC 60.249 50.000 0.00 0.00 0.00 3.77
3442 3510 1.565305 TTTTGCACGCCACATTCAAC 58.435 45.000 0.00 0.00 0.00 3.18
3443 3511 2.299993 TTTTTGCACGCCACATTCAA 57.700 40.000 0.00 0.00 0.00 2.69
3551 3619 9.833894 GCATGCAAATAATAAAATTAGTTGACG 57.166 29.630 14.21 9.83 33.36 4.35
3622 3690 9.686683 AGACAAATACACAGATTAAAATAGGCT 57.313 29.630 0.00 0.00 0.00 4.58
3733 3801 8.560355 TTCACATCTCGGAATAATCTGAAAAA 57.440 30.769 0.00 0.00 40.42 1.94
3734 3802 8.560355 TTTCACATCTCGGAATAATCTGAAAA 57.440 30.769 0.00 0.00 40.42 2.29
3735 3803 8.560355 TTTTCACATCTCGGAATAATCTGAAA 57.440 30.769 0.00 0.00 40.42 2.69
3736 3804 8.560355 TTTTTCACATCTCGGAATAATCTGAA 57.440 30.769 0.00 0.00 40.42 3.02
3737 3805 7.280876 CCTTTTTCACATCTCGGAATAATCTGA 59.719 37.037 0.00 0.00 38.66 3.27
3738 3806 7.066284 ACCTTTTTCACATCTCGGAATAATCTG 59.934 37.037 0.00 0.00 0.00 2.90
3739 3807 7.112779 ACCTTTTTCACATCTCGGAATAATCT 58.887 34.615 0.00 0.00 0.00 2.40
3740 3808 7.321745 ACCTTTTTCACATCTCGGAATAATC 57.678 36.000 0.00 0.00 0.00 1.75
3741 3809 8.980481 ATACCTTTTTCACATCTCGGAATAAT 57.020 30.769 0.00 0.00 0.00 1.28
3742 3810 8.801882 AATACCTTTTTCACATCTCGGAATAA 57.198 30.769 0.00 0.00 0.00 1.40
3743 3811 8.801882 AAATACCTTTTTCACATCTCGGAATA 57.198 30.769 0.00 0.00 0.00 1.75
3744 3812 7.703058 AAATACCTTTTTCACATCTCGGAAT 57.297 32.000 0.00 0.00 0.00 3.01
3745 3813 7.519032 AAAATACCTTTTTCACATCTCGGAA 57.481 32.000 0.00 0.00 30.29 4.30
3746 3814 7.367285 CAAAAATACCTTTTTCACATCTCGGA 58.633 34.615 0.00 0.00 41.49 4.55
3747 3815 6.089417 GCAAAAATACCTTTTTCACATCTCGG 59.911 38.462 0.00 0.00 41.49 4.63
3748 3816 6.863126 AGCAAAAATACCTTTTTCACATCTCG 59.137 34.615 0.00 0.00 41.49 4.04
3749 3817 7.867403 TCAGCAAAAATACCTTTTTCACATCTC 59.133 33.333 0.00 0.00 41.49 2.75
3750 3818 7.725251 TCAGCAAAAATACCTTTTTCACATCT 58.275 30.769 0.00 0.00 41.49 2.90
3751 3819 7.945033 TCAGCAAAAATACCTTTTTCACATC 57.055 32.000 0.00 0.00 41.49 3.06
3752 3820 8.729805 TTTCAGCAAAAATACCTTTTTCACAT 57.270 26.923 0.00 0.00 41.49 3.21
3753 3821 8.553459 TTTTCAGCAAAAATACCTTTTTCACA 57.447 26.923 0.00 0.00 41.49 3.58
3792 3860 0.255318 AGAGGCCAAGCTCCATTGAG 59.745 55.000 5.01 0.00 41.84 3.02
3793 3861 0.034767 CAGAGGCCAAGCTCCATTGA 60.035 55.000 5.01 0.00 31.55 2.57
3794 3862 1.664321 GCAGAGGCCAAGCTCCATTG 61.664 60.000 5.01 0.00 0.00 2.82
3795 3863 1.379576 GCAGAGGCCAAGCTCCATT 60.380 57.895 5.01 0.00 0.00 3.16
3796 3864 2.274760 GCAGAGGCCAAGCTCCAT 59.725 61.111 5.01 0.00 0.00 3.41
3797 3865 3.251509 TGCAGAGGCCAAGCTCCA 61.252 61.111 5.01 0.00 40.13 3.86
3798 3866 2.438075 CTGCAGAGGCCAAGCTCC 60.438 66.667 8.42 0.00 40.13 4.70
3799 3867 2.438075 CCTGCAGAGGCCAAGCTC 60.438 66.667 17.39 0.00 40.13 4.09
3807 3875 3.879912 CAAAAAGTGCCTGCAGAGG 57.120 52.632 17.39 0.19 43.19 3.69
3823 3891 9.520204 GCTCTTTATTATTATTTTCAGCAGCAA 57.480 29.630 0.00 0.00 0.00 3.91
3824 3892 8.906867 AGCTCTTTATTATTATTTTCAGCAGCA 58.093 29.630 0.00 0.00 0.00 4.41
3825 3893 9.392021 GAGCTCTTTATTATTATTTTCAGCAGC 57.608 33.333 6.43 0.00 0.00 5.25
3849 3917 2.836262 CAGAGGCCAAGCTCTATTGAG 58.164 52.381 5.01 0.00 42.96 3.02
3850 3918 1.134280 GCAGAGGCCAAGCTCTATTGA 60.134 52.381 5.01 0.00 31.55 2.57
3851 3919 1.307097 GCAGAGGCCAAGCTCTATTG 58.693 55.000 5.01 0.00 0.00 1.90
3852 3920 0.914644 TGCAGAGGCCAAGCTCTATT 59.085 50.000 5.01 0.00 40.13 1.73
3853 3921 0.469070 CTGCAGAGGCCAAGCTCTAT 59.531 55.000 8.42 0.00 40.13 1.98
3854 3922 1.620739 CCTGCAGAGGCCAAGCTCTA 61.621 60.000 17.39 0.00 40.13 2.43
3855 3923 2.669849 CTGCAGAGGCCAAGCTCT 59.330 61.111 8.42 0.00 40.13 4.09
3856 3924 2.438075 CCTGCAGAGGCCAAGCTC 60.438 66.667 17.39 0.00 40.13 4.09
3864 3932 1.871772 CGAAAAGTGCCTGCAGAGG 59.128 57.895 17.39 0.19 43.19 3.69
3865 3933 1.208614 GCGAAAAGTGCCTGCAGAG 59.791 57.895 17.39 6.56 0.00 3.35
3866 3934 1.227943 AGCGAAAAGTGCCTGCAGA 60.228 52.632 17.39 0.00 0.00 4.26
3867 3935 1.081641 CAGCGAAAAGTGCCTGCAG 60.082 57.895 6.78 6.78 0.00 4.41
3868 3936 1.383456 AACAGCGAAAAGTGCCTGCA 61.383 50.000 0.00 0.00 0.00 4.41
3869 3937 0.249031 AAACAGCGAAAAGTGCCTGC 60.249 50.000 0.00 0.00 0.00 4.85
3870 3938 1.480205 CAAACAGCGAAAAGTGCCTG 58.520 50.000 0.00 0.00 0.00 4.85
3871 3939 0.385390 CCAAACAGCGAAAAGTGCCT 59.615 50.000 0.00 0.00 0.00 4.75
3872 3940 0.102300 ACCAAACAGCGAAAAGTGCC 59.898 50.000 0.00 0.00 0.00 5.01
3873 3941 1.587946 CAACCAAACAGCGAAAAGTGC 59.412 47.619 0.00 0.00 0.00 4.40
3874 3942 2.874849 ACAACCAAACAGCGAAAAGTG 58.125 42.857 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.