Multiple sequence alignment - TraesCS2D01G417900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G417900 chr2D 100.000 5766 0 0 1 5766 531941028 531935263 0.000000e+00 10648
1 TraesCS2D01G417900 chr2D 89.091 110 12 0 5657 5766 558377715 558377606 2.800000e-28 137
2 TraesCS2D01G417900 chr2D 88.393 112 12 1 5654 5765 222600004 222599894 3.620000e-27 134
3 TraesCS2D01G417900 chr2B 97.307 2265 52 6 4 2266 631805505 631803248 0.000000e+00 3836
4 TraesCS2D01G417900 chr2B 95.050 1010 45 4 4067 5074 631801764 631800758 0.000000e+00 1583
5 TraesCS2D01G417900 chr2B 96.570 933 23 5 3054 3979 631802702 631801772 0.000000e+00 1537
6 TraesCS2D01G417900 chr2B 97.459 551 11 2 2395 2942 631803249 631802699 0.000000e+00 937
7 TraesCS2D01G417900 chr2A 94.729 2049 68 12 1 2043 676393804 676391790 0.000000e+00 3149
8 TraesCS2D01G417900 chr2A 96.307 1083 33 4 4057 5134 676390026 676388946 0.000000e+00 1772
9 TraesCS2D01G417900 chr2A 97.672 902 19 2 3054 3954 676390924 676390024 0.000000e+00 1548
10 TraesCS2D01G417900 chr2A 96.892 547 14 2 2399 2942 676391467 676390921 0.000000e+00 913
11 TraesCS2D01G417900 chr2A 88.868 530 26 18 5147 5651 676388960 676388439 6.350000e-174 621
12 TraesCS2D01G417900 chr2A 92.857 224 14 2 2042 2265 676391685 676391464 2.000000e-84 324
13 TraesCS2D01G417900 chr6A 93.662 142 7 1 4933 5074 378253997 378253858 1.630000e-50 211
14 TraesCS2D01G417900 chr6A 90.845 142 11 1 4933 5074 349888610 349888471 7.630000e-44 189
15 TraesCS2D01G417900 chr6A 89.423 104 7 4 3978 4078 502715133 502715235 1.690000e-25 128
16 TraesCS2D01G417900 chr3A 92.958 142 8 1 4933 5074 702415807 702415946 7.570000e-49 206
17 TraesCS2D01G417900 chr3D 92.254 142 9 1 4933 5074 551129586 551129725 3.520000e-47 200
18 TraesCS2D01G417900 chr3D 92.562 121 8 1 2937 3057 65452443 65452562 7.680000e-39 172
19 TraesCS2D01G417900 chr3D 90.226 133 10 3 2937 3068 527127434 527127304 2.760000e-38 171
20 TraesCS2D01G417900 chr3D 95.349 86 4 0 3978 4063 436676900 436676985 2.800000e-28 137
21 TraesCS2D01G417900 chr3D 91.919 99 5 3 3975 4072 22679057 22679153 1.010000e-27 135
22 TraesCS2D01G417900 chr3D 92.708 96 4 3 3978 4072 22767898 22767805 1.010000e-27 135
23 TraesCS2D01G417900 chr7D 95.000 120 6 0 2941 3060 155295420 155295539 7.630000e-44 189
24 TraesCS2D01G417900 chr7D 90.076 131 13 0 2936 3066 50726734 50726604 2.760000e-38 171
25 TraesCS2D01G417900 chr7D 100.000 75 0 0 2265 2339 382072692 382072618 7.790000e-29 139
26 TraesCS2D01G417900 chr7D 100.000 75 0 0 2265 2339 626630900 626630974 7.790000e-29 139
27 TraesCS2D01G417900 chr7D 100.000 75 0 0 2265 2339 626725152 626725226 7.790000e-29 139
28 TraesCS2D01G417900 chr5D 90.698 129 11 1 2933 3060 240084466 240084594 2.760000e-38 171
29 TraesCS2D01G417900 chr5D 84.375 160 19 5 2938 3093 542310160 542310317 1.000000e-32 152
30 TraesCS2D01G417900 chr1D 90.625 128 12 0 2937 3064 469813521 469813394 2.760000e-38 171
31 TraesCS2D01G417900 chr1D 88.489 139 14 2 2919 3057 207187145 207187281 3.570000e-37 167
32 TraesCS2D01G417900 chr1D 100.000 58 0 0 2339 2396 180355743 180355800 2.200000e-19 108
33 TraesCS2D01G417900 chr1D 100.000 58 0 0 2339 2396 254477148 254477091 2.200000e-19 108
34 TraesCS2D01G417900 chr4A 91.129 124 11 0 2941 3064 286746797 286746920 9.940000e-38 169
35 TraesCS2D01G417900 chrUn 100.000 75 0 0 2265 2339 473501283 473501357 7.790000e-29 139
36 TraesCS2D01G417900 chrUn 100.000 58 0 0 2339 2396 426380235 426380292 2.200000e-19 108
37 TraesCS2D01G417900 chrUn 100.000 58 0 0 2339 2396 447482781 447482838 2.200000e-19 108
38 TraesCS2D01G417900 chrUn 100.000 58 0 0 2339 2396 457255200 457255143 2.200000e-19 108
39 TraesCS2D01G417900 chrUn 100.000 58 0 0 2339 2396 462819274 462819331 2.200000e-19 108
40 TraesCS2D01G417900 chrUn 100.000 58 0 0 2339 2396 465171612 465171555 2.200000e-19 108
41 TraesCS2D01G417900 chr7B 100.000 75 0 0 2265 2339 644447099 644447173 7.790000e-29 139
42 TraesCS2D01G417900 chr7B 100.000 75 0 0 2265 2339 743096562 743096636 7.790000e-29 139
43 TraesCS2D01G417900 chr7B 91.667 96 8 0 3978 4073 107127483 107127388 3.620000e-27 134
44 TraesCS2D01G417900 chr1B 100.000 75 0 0 2265 2339 672527296 672527222 7.790000e-29 139
45 TraesCS2D01G417900 chr1B 92.708 96 6 1 3978 4073 510799094 510799188 2.800000e-28 137
46 TraesCS2D01G417900 chr1A 100.000 75 0 0 2265 2339 94566323 94566249 7.790000e-29 139
47 TraesCS2D01G417900 chr1A 100.000 75 0 0 2265 2339 115861730 115861804 7.790000e-29 139
48 TraesCS2D01G417900 chr4B 93.478 92 6 0 3971 4062 20800598 20800507 2.800000e-28 137
49 TraesCS2D01G417900 chr3B 93.407 91 6 0 3972 4062 199558005 199557915 1.010000e-27 135
50 TraesCS2D01G417900 chr3B 93.407 91 6 0 3972 4062 199613685 199613595 1.010000e-27 135
51 TraesCS2D01G417900 chr6B 96.923 65 1 1 2339 2402 450090200 450090136 2.200000e-19 108
52 TraesCS2D01G417900 chr4D 100.000 58 0 0 2339 2396 4108253 4108310 2.200000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G417900 chr2D 531935263 531941028 5765 True 10648.000000 10648 100.000000 1 5766 1 chr2D.!!$R2 5765
1 TraesCS2D01G417900 chr2B 631800758 631805505 4747 True 1973.250000 3836 96.596500 4 5074 4 chr2B.!!$R1 5070
2 TraesCS2D01G417900 chr2A 676388439 676393804 5365 True 1387.833333 3149 94.554167 1 5651 6 chr2A.!!$R1 5650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 188 0.523335 GCCAAATGCTACGGAAAGCG 60.523 55.0 2.82 0.00 45.85 4.68 F
1687 1709 0.252103 TACAGGGTCCAGGAGGTGTC 60.252 60.0 0.00 0.00 35.89 3.67 F
2316 2445 0.320374 TATAGGTATGGCGTGCAGGC 59.680 55.0 22.81 22.81 46.95 4.85 F
2959 3091 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.0 5.23 0.00 44.66 2.17 F
2962 3094 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.0 5.23 0.00 44.66 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2200 0.533032 GGCAGGACTTCTAGTCGCTT 59.467 55.000 1.12 0.0 45.96 4.68 R
2940 3072 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R
3430 3569 1.406180 TCAGCAAATGGGATGAATGCG 59.594 47.619 0.00 0.0 41.72 4.73 R
4354 4518 0.802607 GACGCTCTTCCATGTCGGAC 60.803 60.000 0.00 0.0 46.36 4.79 R
4799 4963 1.003580 ACTCACTTTGATCGCCCACAT 59.996 47.619 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 0.590195 CACAGCAACAGCTTCAGGTC 59.410 55.000 0.00 0.00 36.19 3.85
132 135 5.815222 GCTTCAGGTCTTCCTCTTCTTATTC 59.185 44.000 0.00 0.00 43.07 1.75
175 178 2.362889 CTTCCGGGGCCAAATGCT 60.363 61.111 4.39 0.00 40.92 3.79
185 188 0.523335 GCCAAATGCTACGGAAAGCG 60.523 55.000 2.82 0.00 45.85 4.68
206 210 2.665000 CAGCTCGCCCTCCAAGAA 59.335 61.111 0.00 0.00 0.00 2.52
255 259 4.636249 CTCTGTTCTTCCTACAAGCAACT 58.364 43.478 0.00 0.00 0.00 3.16
384 388 1.001860 AGGAGAGAGTGCTTGCTGTTC 59.998 52.381 0.00 0.00 0.00 3.18
546 550 4.496673 GCGCCGGTATTTTTGTTATCATCA 60.497 41.667 1.90 0.00 0.00 3.07
547 551 4.967575 CGCCGGTATTTTTGTTATCATCAC 59.032 41.667 1.90 0.00 0.00 3.06
979 985 5.004922 GTCTCCTGACATCTTTACCTGAG 57.995 47.826 0.00 0.00 42.48 3.35
980 986 4.026744 TCTCCTGACATCTTTACCTGAGG 58.973 47.826 0.00 0.00 0.00 3.86
981 987 3.107601 TCCTGACATCTTTACCTGAGGG 58.892 50.000 2.38 0.00 38.88 4.30
982 988 2.420687 CCTGACATCTTTACCTGAGGGC 60.421 54.545 2.38 0.00 35.63 5.19
983 989 2.237143 CTGACATCTTTACCTGAGGGCA 59.763 50.000 2.38 0.00 32.08 5.36
984 990 2.846206 TGACATCTTTACCTGAGGGCAT 59.154 45.455 2.38 0.00 35.63 4.40
985 991 3.266772 TGACATCTTTACCTGAGGGCATT 59.733 43.478 2.38 0.00 35.63 3.56
986 992 3.624777 ACATCTTTACCTGAGGGCATTG 58.375 45.455 2.38 0.00 35.63 2.82
987 993 2.806945 TCTTTACCTGAGGGCATTGG 57.193 50.000 2.38 0.00 35.63 3.16
988 994 1.106285 CTTTACCTGAGGGCATTGGC 58.894 55.000 2.38 0.70 40.13 4.52
1075 1096 0.439985 CATCTGTCAACTGTTCGGCG 59.560 55.000 0.00 0.00 0.00 6.46
1533 1554 5.047377 GGTTCACAAGAAATGGCTTAATCCA 60.047 40.000 0.00 0.00 40.97 3.41
1687 1709 0.252103 TACAGGGTCCAGGAGGTGTC 60.252 60.000 0.00 0.00 35.89 3.67
1778 1800 7.880195 AGATGTTCAGTGAGCTTGTTAATAAGT 59.120 33.333 12.82 1.24 0.00 2.24
1792 1814 5.767665 TGTTAATAAGTTGTGTGGCAGTGAT 59.232 36.000 0.00 0.00 0.00 3.06
1881 1903 8.432013 TGCCTAGATATCATCTTCTTTAAGCAA 58.568 33.333 5.32 0.00 40.76 3.91
2032 2054 3.070446 CCATAAGGTTATGACACGGGCTA 59.930 47.826 10.71 0.00 42.38 3.93
2054 2182 7.378995 GGCTAATAGTTACTATGTCAGTTCACG 59.621 40.741 5.58 0.00 38.80 4.35
2113 2241 5.650543 CCAGTGCTAACTTTGTTCTTGTTT 58.349 37.500 0.00 0.00 32.98 2.83
2229 2358 6.426328 CAGCAATCAGAAGTAACTTTCTCACT 59.574 38.462 0.00 0.00 35.28 3.41
2251 2380 3.872182 TGATAGTCTCTAGAGTGTCGTGC 59.128 47.826 19.21 5.48 38.12 5.34
2266 2395 5.880332 AGTGTCGTGCCATTTAATGACTAAT 59.120 36.000 6.50 0.00 34.15 1.73
2267 2396 5.965334 GTGTCGTGCCATTTAATGACTAATG 59.035 40.000 6.50 0.00 34.15 1.90
2268 2397 5.877564 TGTCGTGCCATTTAATGACTAATGA 59.122 36.000 6.50 0.00 34.44 2.57
2269 2398 6.037062 TGTCGTGCCATTTAATGACTAATGAG 59.963 38.462 6.50 0.00 34.44 2.90
2270 2399 6.037172 GTCGTGCCATTTAATGACTAATGAGT 59.963 38.462 6.50 0.00 39.20 3.41
2278 2407 3.364277 GACTAATGAGTCCACCGCC 57.636 57.895 0.00 0.00 45.61 6.13
2279 2408 0.824759 GACTAATGAGTCCACCGCCT 59.175 55.000 0.00 0.00 45.61 5.52
2280 2409 0.537188 ACTAATGAGTCCACCGCCTG 59.463 55.000 0.00 0.00 0.00 4.85
2281 2410 0.811616 CTAATGAGTCCACCGCCTGC 60.812 60.000 0.00 0.00 0.00 4.85
2282 2411 2.252072 TAATGAGTCCACCGCCTGCC 62.252 60.000 0.00 0.00 0.00 4.85
2284 2413 4.767255 GAGTCCACCGCCTGCCTG 62.767 72.222 0.00 0.00 0.00 4.85
2294 2423 4.230603 CCTGCCTGGCACTGTATG 57.769 61.111 19.30 6.84 33.79 2.39
2295 2424 1.452651 CCTGCCTGGCACTGTATGG 60.453 63.158 19.30 12.77 33.79 2.74
2296 2425 1.452651 CTGCCTGGCACTGTATGGG 60.453 63.158 19.30 1.01 33.79 4.00
2297 2426 2.202236 CTGCCTGGCACTGTATGGGT 62.202 60.000 19.30 0.00 33.79 4.51
2298 2427 0.912006 TGCCTGGCACTGTATGGGTA 60.912 55.000 19.30 0.00 31.71 3.69
2299 2428 0.474184 GCCTGGCACTGTATGGGTAT 59.526 55.000 15.17 0.00 0.00 2.73
2300 2429 1.697432 GCCTGGCACTGTATGGGTATA 59.303 52.381 15.17 0.00 0.00 1.47
2301 2430 2.289694 GCCTGGCACTGTATGGGTATAG 60.290 54.545 15.17 0.00 0.00 1.31
2302 2431 2.303022 CCTGGCACTGTATGGGTATAGG 59.697 54.545 0.00 0.00 0.00 2.57
2303 2432 2.972713 CTGGCACTGTATGGGTATAGGT 59.027 50.000 0.00 0.00 0.00 3.08
2304 2433 4.157246 CTGGCACTGTATGGGTATAGGTA 58.843 47.826 0.00 0.00 0.00 3.08
2305 2434 4.758822 TGGCACTGTATGGGTATAGGTAT 58.241 43.478 0.00 0.00 0.00 2.73
2306 2435 4.530553 TGGCACTGTATGGGTATAGGTATG 59.469 45.833 0.00 0.00 0.00 2.39
2307 2436 4.081087 GGCACTGTATGGGTATAGGTATGG 60.081 50.000 0.00 0.00 0.00 2.74
2308 2437 4.623171 GCACTGTATGGGTATAGGTATGGC 60.623 50.000 0.00 0.00 0.00 4.40
2309 2438 3.767673 ACTGTATGGGTATAGGTATGGCG 59.232 47.826 0.00 0.00 0.00 5.69
2310 2439 3.767673 CTGTATGGGTATAGGTATGGCGT 59.232 47.826 0.00 0.00 0.00 5.68
2311 2440 3.512329 TGTATGGGTATAGGTATGGCGTG 59.488 47.826 0.00 0.00 0.00 5.34
2312 2441 0.682852 TGGGTATAGGTATGGCGTGC 59.317 55.000 0.00 0.00 0.00 5.34
2313 2442 0.682852 GGGTATAGGTATGGCGTGCA 59.317 55.000 0.00 0.00 0.00 4.57
2314 2443 1.337823 GGGTATAGGTATGGCGTGCAG 60.338 57.143 0.00 0.00 0.00 4.41
2315 2444 1.337823 GGTATAGGTATGGCGTGCAGG 60.338 57.143 1.01 1.01 0.00 4.85
2316 2445 0.320374 TATAGGTATGGCGTGCAGGC 59.680 55.000 22.81 22.81 46.95 4.85
2329 2458 4.437587 CAGGCCAGCCTCCCTTGG 62.438 72.222 8.61 0.00 46.28 3.61
2330 2459 4.682714 AGGCCAGCCTCCCTTGGA 62.683 66.667 5.04 0.00 44.43 3.53
2331 2460 3.424105 GGCCAGCCTCCCTTGGAT 61.424 66.667 0.00 0.00 0.00 3.41
2332 2461 2.685999 GCCAGCCTCCCTTGGATT 59.314 61.111 0.00 0.00 0.00 3.01
2333 2462 1.000866 GCCAGCCTCCCTTGGATTT 59.999 57.895 0.00 0.00 0.00 2.17
2334 2463 0.615827 GCCAGCCTCCCTTGGATTTT 60.616 55.000 0.00 0.00 0.00 1.82
2335 2464 1.341976 GCCAGCCTCCCTTGGATTTTA 60.342 52.381 0.00 0.00 0.00 1.52
2336 2465 2.659428 CCAGCCTCCCTTGGATTTTAG 58.341 52.381 0.00 0.00 0.00 1.85
2337 2466 2.659428 CAGCCTCCCTTGGATTTTAGG 58.341 52.381 0.00 0.00 0.00 2.69
2338 2467 2.024941 CAGCCTCCCTTGGATTTTAGGT 60.025 50.000 0.00 0.00 0.00 3.08
2339 2468 2.242452 AGCCTCCCTTGGATTTTAGGTC 59.758 50.000 0.00 0.00 0.00 3.85
2340 2469 2.242452 GCCTCCCTTGGATTTTAGGTCT 59.758 50.000 0.00 0.00 0.00 3.85
2341 2470 3.309193 GCCTCCCTTGGATTTTAGGTCTT 60.309 47.826 0.00 0.00 0.00 3.01
2342 2471 4.273318 CCTCCCTTGGATTTTAGGTCTTG 58.727 47.826 0.00 0.00 0.00 3.02
2343 2472 4.263949 CCTCCCTTGGATTTTAGGTCTTGT 60.264 45.833 0.00 0.00 0.00 3.16
2344 2473 5.325239 CTCCCTTGGATTTTAGGTCTTGTT 58.675 41.667 0.00 0.00 0.00 2.83
2345 2474 5.711698 TCCCTTGGATTTTAGGTCTTGTTT 58.288 37.500 0.00 0.00 0.00 2.83
2346 2475 5.773176 TCCCTTGGATTTTAGGTCTTGTTTC 59.227 40.000 0.00 0.00 0.00 2.78
2347 2476 5.538433 CCCTTGGATTTTAGGTCTTGTTTCA 59.462 40.000 0.00 0.00 0.00 2.69
2348 2477 6.447162 CCTTGGATTTTAGGTCTTGTTTCAC 58.553 40.000 0.00 0.00 0.00 3.18
2349 2478 6.399639 TTGGATTTTAGGTCTTGTTTCACC 57.600 37.500 0.00 0.00 0.00 4.02
2350 2479 4.517453 TGGATTTTAGGTCTTGTTTCACCG 59.483 41.667 0.00 0.00 37.79 4.94
2351 2480 4.758165 GGATTTTAGGTCTTGTTTCACCGA 59.242 41.667 0.00 0.00 37.79 4.69
2352 2481 5.106673 GGATTTTAGGTCTTGTTTCACCGAG 60.107 44.000 0.00 0.00 37.79 4.63
2353 2482 3.396260 TTAGGTCTTGTTTCACCGAGG 57.604 47.619 0.00 0.00 37.79 4.63
2354 2483 1.420430 AGGTCTTGTTTCACCGAGGA 58.580 50.000 0.00 0.00 37.79 3.71
2355 2484 1.766496 AGGTCTTGTTTCACCGAGGAA 59.234 47.619 0.00 0.00 37.79 3.36
2356 2485 2.171870 AGGTCTTGTTTCACCGAGGAAA 59.828 45.455 0.00 0.00 37.79 3.13
2357 2486 2.946990 GGTCTTGTTTCACCGAGGAAAA 59.053 45.455 0.00 0.00 38.41 2.29
2358 2487 3.003378 GGTCTTGTTTCACCGAGGAAAAG 59.997 47.826 0.00 0.38 38.41 2.27
2359 2488 3.875134 GTCTTGTTTCACCGAGGAAAAGA 59.125 43.478 0.00 2.37 38.41 2.52
2360 2489 4.024809 GTCTTGTTTCACCGAGGAAAAGAG 60.025 45.833 0.00 5.24 38.41 2.85
2361 2490 3.830744 TGTTTCACCGAGGAAAAGAGA 57.169 42.857 0.00 0.00 38.41 3.10
2362 2491 3.728845 TGTTTCACCGAGGAAAAGAGAG 58.271 45.455 0.00 0.00 38.41 3.20
2363 2492 3.386726 TGTTTCACCGAGGAAAAGAGAGA 59.613 43.478 0.00 0.00 38.41 3.10
2364 2493 4.141801 TGTTTCACCGAGGAAAAGAGAGAA 60.142 41.667 0.00 0.00 38.41 2.87
2365 2494 3.944055 TCACCGAGGAAAAGAGAGAAG 57.056 47.619 0.00 0.00 0.00 2.85
2366 2495 3.231818 TCACCGAGGAAAAGAGAGAAGT 58.768 45.455 0.00 0.00 0.00 3.01
2367 2496 3.641906 TCACCGAGGAAAAGAGAGAAGTT 59.358 43.478 0.00 0.00 0.00 2.66
2368 2497 3.991121 CACCGAGGAAAAGAGAGAAGTTC 59.009 47.826 0.00 0.00 0.00 3.01
2369 2498 3.898741 ACCGAGGAAAAGAGAGAAGTTCT 59.101 43.478 4.68 4.68 39.43 3.01
2370 2499 4.241681 CCGAGGAAAAGAGAGAAGTTCTG 58.758 47.826 10.90 0.00 35.87 3.02
2371 2500 4.241681 CGAGGAAAAGAGAGAAGTTCTGG 58.758 47.826 10.90 0.00 35.87 3.86
2372 2501 4.021894 CGAGGAAAAGAGAGAAGTTCTGGA 60.022 45.833 10.90 0.00 35.87 3.86
2373 2502 5.337169 CGAGGAAAAGAGAGAAGTTCTGGAT 60.337 44.000 10.90 0.00 35.87 3.41
2374 2503 6.127591 CGAGGAAAAGAGAGAAGTTCTGGATA 60.128 42.308 10.90 0.00 35.87 2.59
2375 2504 7.560796 AGGAAAAGAGAGAAGTTCTGGATAA 57.439 36.000 10.90 0.00 35.87 1.75
2376 2505 7.978925 AGGAAAAGAGAGAAGTTCTGGATAAA 58.021 34.615 10.90 0.00 35.87 1.40
2377 2506 8.610369 AGGAAAAGAGAGAAGTTCTGGATAAAT 58.390 33.333 10.90 0.00 35.87 1.40
2378 2507 9.237187 GGAAAAGAGAGAAGTTCTGGATAAATT 57.763 33.333 10.90 0.00 35.87 1.82
2380 2509 9.799106 AAAAGAGAGAAGTTCTGGATAAATTGA 57.201 29.630 10.90 0.00 35.87 2.57
2381 2510 8.785329 AAGAGAGAAGTTCTGGATAAATTGAC 57.215 34.615 10.90 0.00 35.87 3.18
2382 2511 7.911651 AGAGAGAAGTTCTGGATAAATTGACA 58.088 34.615 10.90 0.00 35.87 3.58
2383 2512 8.378565 AGAGAGAAGTTCTGGATAAATTGACAA 58.621 33.333 10.90 0.00 35.87 3.18
2384 2513 9.171877 GAGAGAAGTTCTGGATAAATTGACAAT 57.828 33.333 10.90 0.00 35.87 2.71
2385 2514 8.954350 AGAGAAGTTCTGGATAAATTGACAATG 58.046 33.333 10.90 0.00 33.93 2.82
2386 2515 7.542025 AGAAGTTCTGGATAAATTGACAATGC 58.458 34.615 4.10 0.00 0.00 3.56
2387 2516 7.395489 AGAAGTTCTGGATAAATTGACAATGCT 59.605 33.333 4.10 0.00 0.00 3.79
2388 2517 6.860080 AGTTCTGGATAAATTGACAATGCTG 58.140 36.000 0.34 0.00 0.00 4.41
2389 2518 6.660521 AGTTCTGGATAAATTGACAATGCTGA 59.339 34.615 0.34 0.00 0.00 4.26
2390 2519 7.177216 AGTTCTGGATAAATTGACAATGCTGAA 59.823 33.333 0.34 0.00 30.45 3.02
2391 2520 7.649533 TCTGGATAAATTGACAATGCTGAAT 57.350 32.000 0.34 0.00 0.00 2.57
2392 2521 8.070034 TCTGGATAAATTGACAATGCTGAATT 57.930 30.769 0.34 0.00 0.00 2.17
2438 2567 9.123902 AGTTATCATATGCAGCTTAACAATTGA 57.876 29.630 13.59 0.00 0.00 2.57
2458 2587 2.170607 GAGCCCCTGCACAAATCTAGTA 59.829 50.000 0.00 0.00 41.13 1.82
2472 2601 8.070171 CACAAATCTAGTAACCACTTGTCTTTG 58.930 37.037 0.00 11.30 37.32 2.77
2915 3047 8.375506 TCTGGTTGATATAGGGAATTCATGTAC 58.624 37.037 7.93 0.00 0.00 2.90
2940 3072 9.125026 ACTATTCACAGAATTGAACTTCAAAGT 57.875 29.630 8.28 0.09 40.12 2.66
2943 3075 8.506168 TTCACAGAATTGAACTTCAAAGTACT 57.494 30.769 8.28 0.00 40.12 2.73
2944 3076 8.142994 TCACAGAATTGAACTTCAAAGTACTC 57.857 34.615 8.28 1.85 40.12 2.59
2945 3077 7.226720 TCACAGAATTGAACTTCAAAGTACTCC 59.773 37.037 8.28 0.00 40.12 3.85
2946 3078 6.486993 ACAGAATTGAACTTCAAAGTACTCCC 59.513 38.462 8.28 0.00 40.12 4.30
2947 3079 6.712547 CAGAATTGAACTTCAAAGTACTCCCT 59.287 38.462 8.28 0.00 40.12 4.20
2948 3080 6.937465 AGAATTGAACTTCAAAGTACTCCCTC 59.063 38.462 8.28 0.00 40.12 4.30
2949 3081 4.618920 TGAACTTCAAAGTACTCCCTCC 57.381 45.455 0.00 0.00 38.57 4.30
2950 3082 3.006537 TGAACTTCAAAGTACTCCCTCCG 59.993 47.826 0.00 0.00 38.57 4.63
2951 3083 2.606378 ACTTCAAAGTACTCCCTCCGT 58.394 47.619 0.00 0.00 37.52 4.69
2952 3084 2.561858 ACTTCAAAGTACTCCCTCCGTC 59.438 50.000 0.00 0.00 37.52 4.79
2953 3085 1.553706 TCAAAGTACTCCCTCCGTCC 58.446 55.000 0.00 0.00 0.00 4.79
2954 3086 0.172803 CAAAGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
2955 3087 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2956 3088 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2957 3089 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2958 3090 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
2959 3091 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
2960 3092 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
2961 3093 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
2962 3094 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
2963 3095 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
2964 3096 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2965 3097 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2966 3098 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2967 3099 2.165845 CTCCGTCCGGAATTACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
2968 3100 2.564062 TCCGTCCGGAATTACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
2969 3101 3.763360 TCCGTCCGGAATTACTTGTCTTA 59.237 43.478 5.23 0.00 42.05 2.10
2970 3102 4.220382 TCCGTCCGGAATTACTTGTCTTAA 59.780 41.667 5.23 0.00 42.05 1.85
2971 3103 4.931002 CCGTCCGGAATTACTTGTCTTAAA 59.069 41.667 5.23 0.00 37.50 1.52
2972 3104 5.409214 CCGTCCGGAATTACTTGTCTTAAAA 59.591 40.000 5.23 0.00 37.50 1.52
2973 3105 6.073112 CCGTCCGGAATTACTTGTCTTAAAAA 60.073 38.462 5.23 0.00 37.50 1.94
2974 3106 7.361457 CCGTCCGGAATTACTTGTCTTAAAAAT 60.361 37.037 5.23 0.00 37.50 1.82
2975 3107 7.480542 CGTCCGGAATTACTTGTCTTAAAAATG 59.519 37.037 5.23 0.00 0.00 2.32
2976 3108 8.508875 GTCCGGAATTACTTGTCTTAAAAATGA 58.491 33.333 5.23 0.00 0.00 2.57
2977 3109 9.069082 TCCGGAATTACTTGTCTTAAAAATGAA 57.931 29.630 0.00 0.00 0.00 2.57
2978 3110 9.855021 CCGGAATTACTTGTCTTAAAAATGAAT 57.145 29.630 0.00 0.00 0.00 2.57
3031 3163 8.637196 ACATCTAGATACATACATTTCTCCGA 57.363 34.615 4.54 0.00 0.00 4.55
3032 3164 8.516234 ACATCTAGATACATACATTTCTCCGAC 58.484 37.037 4.54 0.00 0.00 4.79
3033 3165 8.515414 CATCTAGATACATACATTTCTCCGACA 58.485 37.037 4.54 0.00 0.00 4.35
3034 3166 8.459911 TCTAGATACATACATTTCTCCGACAA 57.540 34.615 0.00 0.00 0.00 3.18
3035 3167 8.568794 TCTAGATACATACATTTCTCCGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
3036 3168 7.113658 AGATACATACATTTCTCCGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
3037 3169 8.234136 AGATACATACATTTCTCCGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
3038 3170 8.692710 AGATACATACATTTCTCCGACAAGTAA 58.307 33.333 0.00 0.00 0.00 2.24
3039 3171 9.477484 GATACATACATTTCTCCGACAAGTAAT 57.523 33.333 0.00 0.00 0.00 1.89
3040 3172 9.832445 ATACATACATTTCTCCGACAAGTAATT 57.168 29.630 0.00 0.00 0.00 1.40
3041 3173 8.197988 ACATACATTTCTCCGACAAGTAATTC 57.802 34.615 0.00 0.00 0.00 2.17
3042 3174 7.280205 ACATACATTTCTCCGACAAGTAATTCC 59.720 37.037 0.00 0.00 0.00 3.01
3043 3175 4.630069 ACATTTCTCCGACAAGTAATTCCG 59.370 41.667 0.00 0.00 0.00 4.30
3044 3176 4.524316 TTTCTCCGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3045 3177 4.524316 TTCTCCGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3046 3178 3.841643 TCTCCGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3047 3179 2.597305 CTCCGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3048 3180 1.657094 CCGACAAGTAATTCCGAACGG 59.343 52.381 6.94 6.94 0.00 4.44
3049 3181 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3050 3182 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3051 3183 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3052 3184 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3152 3285 2.995466 ATGCATTCCACGAACACAAG 57.005 45.000 0.00 0.00 0.00 3.16
3209 3342 4.196193 TGTACCAGTTTTTGTCAGTCAGG 58.804 43.478 0.00 0.00 0.00 3.86
3401 3540 1.626356 TATGCTGCCCCTCTGTGGAC 61.626 60.000 0.00 0.00 38.35 4.02
3424 3563 1.661112 GCAGAGACATTTGTACGAGCC 59.339 52.381 0.00 0.00 0.00 4.70
3697 3836 5.010112 TGAGAACCGCCAAACATTTGATTTA 59.990 36.000 5.91 0.00 40.55 1.40
3901 4040 8.865590 TTGATCTTATCATAAACGACGAATCA 57.134 30.769 0.00 0.00 39.39 2.57
3951 4090 2.849942 TCATGTTCCAGTGTTGTCCTG 58.150 47.619 0.00 0.00 0.00 3.86
3961 4100 5.964958 CAGTGTTGTCCTGGAAATACATT 57.035 39.130 0.00 0.00 0.00 2.71
3962 4101 6.331369 CAGTGTTGTCCTGGAAATACATTT 57.669 37.500 0.00 0.00 0.00 2.32
3963 4102 6.151691 CAGTGTTGTCCTGGAAATACATTTG 58.848 40.000 0.00 3.28 0.00 2.32
3964 4103 6.016360 CAGTGTTGTCCTGGAAATACATTTGA 60.016 38.462 0.00 0.00 0.00 2.69
3965 4104 6.016276 AGTGTTGTCCTGGAAATACATTTGAC 60.016 38.462 0.00 0.00 0.00 3.18
3966 4105 5.830457 TGTTGTCCTGGAAATACATTTGACA 59.170 36.000 0.00 0.00 31.41 3.58
3967 4106 6.493115 TGTTGTCCTGGAAATACATTTGACAT 59.507 34.615 0.00 0.00 32.59 3.06
3968 4107 6.513806 TGTCCTGGAAATACATTTGACATG 57.486 37.500 0.00 0.00 29.58 3.21
3969 4108 5.105797 TGTCCTGGAAATACATTTGACATGC 60.106 40.000 0.00 0.00 29.58 4.06
3970 4109 5.015515 TCCTGGAAATACATTTGACATGCA 58.984 37.500 0.00 0.00 0.00 3.96
3971 4110 5.479724 TCCTGGAAATACATTTGACATGCAA 59.520 36.000 0.00 0.00 33.88 4.08
3984 4123 7.716799 TTTGACATGCAAAATTATACTCCCT 57.283 32.000 11.32 0.00 43.18 4.20
3985 4124 6.942532 TGACATGCAAAATTATACTCCCTC 57.057 37.500 0.00 0.00 0.00 4.30
3986 4125 5.827797 TGACATGCAAAATTATACTCCCTCC 59.172 40.000 0.00 0.00 0.00 4.30
3987 4126 4.821805 ACATGCAAAATTATACTCCCTCCG 59.178 41.667 0.00 0.00 0.00 4.63
3988 4127 4.497291 TGCAAAATTATACTCCCTCCGT 57.503 40.909 0.00 0.00 0.00 4.69
3989 4128 5.617528 TGCAAAATTATACTCCCTCCGTA 57.382 39.130 0.00 0.00 0.00 4.02
3990 4129 5.991861 TGCAAAATTATACTCCCTCCGTAA 58.008 37.500 0.00 0.00 0.00 3.18
3991 4130 6.416415 TGCAAAATTATACTCCCTCCGTAAA 58.584 36.000 0.00 0.00 0.00 2.01
3992 4131 6.540914 TGCAAAATTATACTCCCTCCGTAAAG 59.459 38.462 0.00 0.00 0.00 1.85
3993 4132 6.764560 GCAAAATTATACTCCCTCCGTAAAGA 59.235 38.462 0.00 0.00 0.00 2.52
3994 4133 7.281549 GCAAAATTATACTCCCTCCGTAAAGAA 59.718 37.037 0.00 0.00 0.00 2.52
3995 4134 9.169592 CAAAATTATACTCCCTCCGTAAAGAAA 57.830 33.333 0.00 0.00 0.00 2.52
3996 4135 9.916360 AAAATTATACTCCCTCCGTAAAGAAAT 57.084 29.630 0.00 0.00 0.00 2.17
4002 4141 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4003 4142 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4004 4143 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4005 4144 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4006 4145 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4007 4146 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4008 4147 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4009 4148 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4010 4149 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4011 4150 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4015 4154 8.421673 AAGAAATATAAGAGCGTTTAGACCAC 57.578 34.615 0.00 0.00 0.00 4.16
4016 4155 7.783042 AGAAATATAAGAGCGTTTAGACCACT 58.217 34.615 0.00 0.00 0.00 4.00
4017 4156 8.910944 AGAAATATAAGAGCGTTTAGACCACTA 58.089 33.333 0.00 0.00 0.00 2.74
4018 4157 8.868635 AAATATAAGAGCGTTTAGACCACTAC 57.131 34.615 0.00 0.00 0.00 2.73
4019 4158 7.820578 ATATAAGAGCGTTTAGACCACTACT 57.179 36.000 0.00 0.00 0.00 2.57
4020 4159 4.868314 AAGAGCGTTTAGACCACTACTT 57.132 40.909 0.00 0.00 0.00 2.24
4021 4160 4.868314 AGAGCGTTTAGACCACTACTTT 57.132 40.909 0.00 0.00 0.00 2.66
4022 4161 5.972107 AGAGCGTTTAGACCACTACTTTA 57.028 39.130 0.00 0.00 0.00 1.85
4023 4162 5.952033 AGAGCGTTTAGACCACTACTTTAG 58.048 41.667 0.00 0.00 0.00 1.85
4024 4163 5.476254 AGAGCGTTTAGACCACTACTTTAGT 59.524 40.000 0.00 0.00 40.28 2.24
4025 4164 6.656693 AGAGCGTTTAGACCACTACTTTAGTA 59.343 38.462 0.00 0.00 37.23 1.82
4073 4236 5.615289 ACAGAGGGAGTATCATGTTATTGC 58.385 41.667 0.00 0.00 36.25 3.56
4191 4355 3.809279 GCTTTTGTGGCTGCAATTAACTT 59.191 39.130 0.50 0.00 0.00 2.66
4498 4662 3.760035 CTGCACCTAGGCGACCGT 61.760 66.667 9.30 0.00 36.28 4.83
4519 4683 3.458163 CCCAAGCGGCTCCGTCTA 61.458 66.667 1.45 0.00 42.09 2.59
4561 4725 2.892852 CCTTGAAAAACAGCCTCATCCA 59.107 45.455 0.00 0.00 0.00 3.41
4777 4941 1.601430 GAGAAATGAAGCGCTGATCCC 59.399 52.381 12.58 0.00 0.00 3.85
4788 4952 2.618241 GCGCTGATCCCAATGACATTTA 59.382 45.455 0.00 0.00 0.00 1.40
4799 4963 4.585581 CCAATGACATTTATGGGATGAGCA 59.414 41.667 0.00 0.00 0.00 4.26
4805 4974 2.662535 TTATGGGATGAGCATGTGGG 57.337 50.000 0.00 0.00 0.00 4.61
4815 4984 0.322816 AGCATGTGGGCGATCAAAGT 60.323 50.000 0.00 0.00 39.27 2.66
4915 5085 4.703093 TCGTGGGAAGCATATCGTATCATA 59.297 41.667 0.00 0.00 0.00 2.15
4918 5088 6.460261 CGTGGGAAGCATATCGTATCATATCT 60.460 42.308 0.00 0.00 0.00 1.98
5055 5225 1.815003 CTTGGAGAAGACAATGTGCCC 59.185 52.381 0.00 0.00 0.00 5.36
5056 5226 0.038166 TGGAGAAGACAATGTGCCCC 59.962 55.000 0.00 0.00 0.00 5.80
5088 5258 0.690762 TCTGGTTCACCCCTTGTAGC 59.309 55.000 0.00 0.00 34.29 3.58
5113 5283 7.468220 GCATGTTGCTAGATGATTGATCTTTCA 60.468 37.037 9.41 0.00 38.12 2.69
5207 5377 6.150318 TGTTCACTCGTTACTCAGATTTCTC 58.850 40.000 0.00 0.00 0.00 2.87
5297 5467 3.636300 TGGATTGTAGCACTGCAGTTTTT 59.364 39.130 18.94 8.19 0.00 1.94
5324 5494 6.857956 TGTTCCCATAAAATTTGACGGTATG 58.142 36.000 0.00 0.00 0.00 2.39
5356 5526 6.239543 GCTGGATCTGAATCTCTTCTATTGGA 60.240 42.308 0.00 0.00 32.29 3.53
5406 5576 7.915930 AGAACCTGGGATGATTGATCTTATAG 58.084 38.462 0.00 0.00 0.00 1.31
5452 5631 4.706962 GTCTTAAAAGGACATGGAAGCCAT 59.293 41.667 0.00 0.00 46.37 4.40
5462 5641 2.286365 TGGAAGCCATTTTCGAGGTT 57.714 45.000 0.00 0.00 0.00 3.50
5464 5643 1.202348 GGAAGCCATTTTCGAGGTTGG 59.798 52.381 5.49 5.49 0.00 3.77
5480 5659 2.501316 GGTTGGAAGAATCCCCAATTGG 59.499 50.000 18.21 18.21 45.95 3.16
5585 5780 9.678941 CATATGACATTGAAAGATCTCAAATGG 57.321 33.333 20.44 9.62 38.75 3.16
5590 5785 7.729116 ACATTGAAAGATCTCAAATGGTGTTT 58.271 30.769 20.44 0.72 38.75 2.83
5619 5814 9.846248 AATTGTAAATGTTTGACTGAAGCTATC 57.154 29.630 0.00 0.00 0.00 2.08
5625 5820 5.297547 TGTTTGACTGAAGCTATCGAAAGT 58.702 37.500 0.00 0.00 0.00 2.66
5652 5847 4.519906 GGAATCTTCCACCCCTTATTCA 57.480 45.455 4.05 0.00 46.76 2.57
5653 5848 4.867086 GGAATCTTCCACCCCTTATTCAA 58.133 43.478 4.05 0.00 46.76 2.69
5654 5849 4.889995 GGAATCTTCCACCCCTTATTCAAG 59.110 45.833 4.05 0.00 46.76 3.02
5655 5850 5.510430 GAATCTTCCACCCCTTATTCAAGT 58.490 41.667 0.00 0.00 0.00 3.16
5656 5851 4.301072 TCTTCCACCCCTTATTCAAGTG 57.699 45.455 0.00 0.00 0.00 3.16
5657 5852 3.913799 TCTTCCACCCCTTATTCAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
5658 5853 4.540099 TCTTCCACCCCTTATTCAAGTGAT 59.460 41.667 0.00 0.00 0.00 3.06
5659 5854 4.235079 TCCACCCCTTATTCAAGTGATG 57.765 45.455 0.00 0.00 0.00 3.07
5660 5855 2.689983 CCACCCCTTATTCAAGTGATGC 59.310 50.000 0.00 0.00 0.00 3.91
5661 5856 3.355378 CACCCCTTATTCAAGTGATGCA 58.645 45.455 0.00 0.00 0.00 3.96
5662 5857 3.763360 CACCCCTTATTCAAGTGATGCAA 59.237 43.478 0.00 0.00 0.00 4.08
5663 5858 4.220382 CACCCCTTATTCAAGTGATGCAAA 59.780 41.667 0.00 0.00 0.00 3.68
5664 5859 4.463891 ACCCCTTATTCAAGTGATGCAAAG 59.536 41.667 0.00 0.00 0.00 2.77
5665 5860 4.142093 CCCCTTATTCAAGTGATGCAAAGG 60.142 45.833 0.00 0.00 34.37 3.11
5666 5861 4.463891 CCCTTATTCAAGTGATGCAAAGGT 59.536 41.667 0.00 0.00 33.51 3.50
5667 5862 5.404946 CCTTATTCAAGTGATGCAAAGGTG 58.595 41.667 0.00 0.00 32.05 4.00
5668 5863 5.183713 CCTTATTCAAGTGATGCAAAGGTGA 59.816 40.000 0.00 0.00 32.05 4.02
5669 5864 3.988379 TTCAAGTGATGCAAAGGTGAC 57.012 42.857 0.00 0.00 0.00 3.67
5670 5865 1.872952 TCAAGTGATGCAAAGGTGACG 59.127 47.619 0.00 0.00 0.00 4.35
5671 5866 1.872952 CAAGTGATGCAAAGGTGACGA 59.127 47.619 0.00 0.00 0.00 4.20
5672 5867 2.479566 AGTGATGCAAAGGTGACGAT 57.520 45.000 0.00 0.00 0.00 3.73
5673 5868 2.350522 AGTGATGCAAAGGTGACGATC 58.649 47.619 0.00 0.00 0.00 3.69
5674 5869 2.076100 GTGATGCAAAGGTGACGATCA 58.924 47.619 0.00 0.00 0.00 2.92
5675 5870 2.483877 GTGATGCAAAGGTGACGATCAA 59.516 45.455 0.00 0.00 0.00 2.57
5676 5871 2.743664 TGATGCAAAGGTGACGATCAAG 59.256 45.455 0.00 0.00 0.00 3.02
5677 5872 0.874390 TGCAAAGGTGACGATCAAGC 59.126 50.000 0.00 0.00 0.00 4.01
5678 5873 0.179215 GCAAAGGTGACGATCAAGCG 60.179 55.000 0.00 0.00 37.29 4.68
5679 5874 1.428448 CAAAGGTGACGATCAAGCGA 58.572 50.000 0.00 0.00 34.83 4.93
5680 5875 1.126846 CAAAGGTGACGATCAAGCGAC 59.873 52.381 0.00 0.00 34.83 5.19
5681 5876 0.317160 AAGGTGACGATCAAGCGACA 59.683 50.000 0.00 0.00 33.94 4.35
5682 5877 0.532573 AGGTGACGATCAAGCGACAT 59.467 50.000 0.00 0.00 38.12 3.06
5683 5878 0.647410 GGTGACGATCAAGCGACATG 59.353 55.000 0.00 0.00 38.12 3.21
5684 5879 0.647410 GTGACGATCAAGCGACATGG 59.353 55.000 0.00 0.00 38.12 3.66
5685 5880 1.083806 TGACGATCAAGCGACATGGC 61.084 55.000 0.00 0.00 31.64 4.40
5687 5882 0.459899 ACGATCAAGCGACATGGCTA 59.540 50.000 0.00 0.00 43.93 3.93
5688 5883 1.135046 CGATCAAGCGACATGGCTAG 58.865 55.000 0.00 0.00 43.93 3.42
5689 5884 1.506493 GATCAAGCGACATGGCTAGG 58.494 55.000 0.00 0.00 43.93 3.02
5690 5885 1.069204 GATCAAGCGACATGGCTAGGA 59.931 52.381 0.00 0.00 43.93 2.94
5691 5886 0.901827 TCAAGCGACATGGCTAGGAA 59.098 50.000 0.00 0.00 43.93 3.36
5692 5887 1.277842 TCAAGCGACATGGCTAGGAAA 59.722 47.619 0.00 0.00 43.93 3.13
5693 5888 1.667724 CAAGCGACATGGCTAGGAAAG 59.332 52.381 0.00 0.00 43.93 2.62
5694 5889 1.195115 AGCGACATGGCTAGGAAAGA 58.805 50.000 0.00 0.00 42.62 2.52
5695 5890 1.134670 AGCGACATGGCTAGGAAAGAC 60.135 52.381 0.00 0.00 42.62 3.01
5696 5891 1.941325 CGACATGGCTAGGAAAGACC 58.059 55.000 0.00 0.00 39.35 3.85
5697 5892 1.207089 CGACATGGCTAGGAAAGACCA 59.793 52.381 0.00 0.00 42.04 4.02
5698 5893 2.354704 CGACATGGCTAGGAAAGACCAA 60.355 50.000 0.00 0.00 42.04 3.67
5699 5894 3.686016 GACATGGCTAGGAAAGACCAAA 58.314 45.455 0.00 0.00 42.04 3.28
5700 5895 3.690460 ACATGGCTAGGAAAGACCAAAG 58.310 45.455 0.00 0.00 42.04 2.77
5701 5896 2.879103 TGGCTAGGAAAGACCAAAGG 57.121 50.000 0.00 0.00 42.04 3.11
5702 5897 1.354368 TGGCTAGGAAAGACCAAAGGG 59.646 52.381 0.00 0.00 42.04 3.95
5703 5898 1.464734 GCTAGGAAAGACCAAAGGGC 58.535 55.000 0.00 0.00 42.04 5.19
5704 5899 1.271926 GCTAGGAAAGACCAAAGGGCA 60.272 52.381 0.00 0.00 42.04 5.36
5705 5900 2.817839 GCTAGGAAAGACCAAAGGGCAA 60.818 50.000 0.00 0.00 42.04 4.52
5706 5901 1.704641 AGGAAAGACCAAAGGGCAAC 58.295 50.000 0.00 0.00 42.04 4.17
5707 5902 1.217942 AGGAAAGACCAAAGGGCAACT 59.782 47.619 0.00 0.00 42.04 3.16
5708 5903 2.445525 AGGAAAGACCAAAGGGCAACTA 59.554 45.455 0.00 0.00 42.04 2.24
5709 5904 3.076032 AGGAAAGACCAAAGGGCAACTAT 59.924 43.478 0.00 0.00 42.04 2.12
5710 5905 3.193479 GGAAAGACCAAAGGGCAACTATG 59.807 47.826 0.00 0.00 37.90 2.23
5711 5906 3.525800 AAGACCAAAGGGCAACTATGT 57.474 42.857 0.00 0.00 37.90 2.29
5712 5907 2.795329 AGACCAAAGGGCAACTATGTG 58.205 47.619 0.00 0.00 37.90 3.21
5713 5908 2.375174 AGACCAAAGGGCAACTATGTGA 59.625 45.455 0.00 0.00 37.90 3.58
5714 5909 3.153919 GACCAAAGGGCAACTATGTGAA 58.846 45.455 0.00 0.00 37.90 3.18
5715 5910 3.157087 ACCAAAGGGCAACTATGTGAAG 58.843 45.455 0.00 0.00 37.90 3.02
5716 5911 2.493278 CCAAAGGGCAACTATGTGAAGG 59.507 50.000 0.00 0.00 0.00 3.46
5717 5912 3.157087 CAAAGGGCAACTATGTGAAGGT 58.843 45.455 0.00 0.00 0.00 3.50
5718 5913 4.331968 CAAAGGGCAACTATGTGAAGGTA 58.668 43.478 0.00 0.00 0.00 3.08
5719 5914 4.650972 AAGGGCAACTATGTGAAGGTAA 57.349 40.909 0.00 0.00 0.00 2.85
5720 5915 4.222124 AGGGCAACTATGTGAAGGTAAG 57.778 45.455 0.00 0.00 0.00 2.34
5721 5916 2.683362 GGGCAACTATGTGAAGGTAAGC 59.317 50.000 0.00 0.00 0.00 3.09
5722 5917 2.351726 GGCAACTATGTGAAGGTAAGCG 59.648 50.000 0.00 0.00 0.00 4.68
5723 5918 3.000727 GCAACTATGTGAAGGTAAGCGT 58.999 45.455 0.00 0.00 0.00 5.07
5724 5919 3.181520 GCAACTATGTGAAGGTAAGCGTG 60.182 47.826 0.00 0.00 0.00 5.34
5725 5920 3.247006 ACTATGTGAAGGTAAGCGTGG 57.753 47.619 0.00 0.00 0.00 4.94
5726 5921 2.829720 ACTATGTGAAGGTAAGCGTGGA 59.170 45.455 0.00 0.00 0.00 4.02
5727 5922 3.451178 ACTATGTGAAGGTAAGCGTGGAT 59.549 43.478 0.00 0.00 0.00 3.41
5728 5923 2.093306 TGTGAAGGTAAGCGTGGATG 57.907 50.000 0.00 0.00 0.00 3.51
5729 5924 1.338674 TGTGAAGGTAAGCGTGGATGG 60.339 52.381 0.00 0.00 0.00 3.51
5730 5925 0.251916 TGAAGGTAAGCGTGGATGGG 59.748 55.000 0.00 0.00 0.00 4.00
5731 5926 0.463833 GAAGGTAAGCGTGGATGGGG 60.464 60.000 0.00 0.00 0.00 4.96
5732 5927 2.516225 GGTAAGCGTGGATGGGGC 60.516 66.667 0.00 0.00 0.00 5.80
5733 5928 2.590092 GTAAGCGTGGATGGGGCT 59.410 61.111 0.00 0.00 39.01 5.19
5735 5930 0.679960 GTAAGCGTGGATGGGGCTTT 60.680 55.000 2.62 0.00 44.03 3.51
5736 5931 0.039035 TAAGCGTGGATGGGGCTTTT 59.961 50.000 2.62 0.00 44.03 2.27
5737 5932 0.039035 AAGCGTGGATGGGGCTTTTA 59.961 50.000 0.00 0.00 44.03 1.52
5738 5933 0.039035 AGCGTGGATGGGGCTTTTAA 59.961 50.000 0.00 0.00 31.91 1.52
5739 5934 0.172578 GCGTGGATGGGGCTTTTAAC 59.827 55.000 0.00 0.00 0.00 2.01
5740 5935 0.815095 CGTGGATGGGGCTTTTAACC 59.185 55.000 0.00 0.00 0.00 2.85
5741 5936 1.615919 CGTGGATGGGGCTTTTAACCT 60.616 52.381 0.00 0.00 0.00 3.50
5742 5937 2.356330 CGTGGATGGGGCTTTTAACCTA 60.356 50.000 0.00 0.00 0.00 3.08
5743 5938 3.288092 GTGGATGGGGCTTTTAACCTAG 58.712 50.000 0.00 0.00 0.00 3.02
5744 5939 3.053917 GTGGATGGGGCTTTTAACCTAGA 60.054 47.826 0.00 0.00 0.00 2.43
5745 5940 3.791545 TGGATGGGGCTTTTAACCTAGAT 59.208 43.478 0.00 0.00 0.00 1.98
5746 5941 4.231890 TGGATGGGGCTTTTAACCTAGATT 59.768 41.667 0.00 0.00 0.00 2.40
5747 5942 5.208890 GGATGGGGCTTTTAACCTAGATTT 58.791 41.667 0.00 0.00 0.00 2.17
5748 5943 6.068735 TGGATGGGGCTTTTAACCTAGATTTA 60.069 38.462 0.00 0.00 0.00 1.40
5749 5944 6.264744 GGATGGGGCTTTTAACCTAGATTTAC 59.735 42.308 0.00 0.00 0.00 2.01
5750 5945 6.397217 TGGGGCTTTTAACCTAGATTTACT 57.603 37.500 0.00 0.00 0.00 2.24
5751 5946 6.420638 TGGGGCTTTTAACCTAGATTTACTC 58.579 40.000 0.00 0.00 0.00 2.59
5752 5947 6.012333 TGGGGCTTTTAACCTAGATTTACTCA 60.012 38.462 0.00 0.00 0.00 3.41
5753 5948 6.888088 GGGGCTTTTAACCTAGATTTACTCAA 59.112 38.462 0.00 0.00 0.00 3.02
5754 5949 7.067129 GGGGCTTTTAACCTAGATTTACTCAAG 59.933 40.741 0.00 0.00 0.00 3.02
5755 5950 7.067129 GGGCTTTTAACCTAGATTTACTCAAGG 59.933 40.741 0.00 0.00 32.26 3.61
5756 5951 7.067129 GGCTTTTAACCTAGATTTACTCAAGGG 59.933 40.741 0.00 0.00 30.71 3.95
5757 5952 7.415318 GCTTTTAACCTAGATTTACTCAAGGGC 60.415 40.741 0.00 0.00 30.71 5.19
5758 5953 6.886178 TTAACCTAGATTTACTCAAGGGCT 57.114 37.500 0.00 0.00 30.71 5.19
5759 5954 5.360649 AACCTAGATTTACTCAAGGGCTC 57.639 43.478 0.00 0.00 30.71 4.70
5760 5955 3.385111 ACCTAGATTTACTCAAGGGCTCG 59.615 47.826 0.00 0.00 30.71 5.03
5761 5956 3.385111 CCTAGATTTACTCAAGGGCTCGT 59.615 47.826 0.00 0.00 0.00 4.18
5762 5957 4.583489 CCTAGATTTACTCAAGGGCTCGTA 59.417 45.833 0.00 0.00 0.00 3.43
5763 5958 5.244178 CCTAGATTTACTCAAGGGCTCGTAT 59.756 44.000 0.00 0.00 0.00 3.06
5764 5959 4.950050 AGATTTACTCAAGGGCTCGTATG 58.050 43.478 0.00 0.00 0.00 2.39
5765 5960 4.649674 AGATTTACTCAAGGGCTCGTATGA 59.350 41.667 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 4.698575 CGGAAGGGAATAAGAAGAGGAAG 58.301 47.826 0.00 0.00 0.00 3.46
132 135 2.751837 GCAAGGAAGGCGGAAGGG 60.752 66.667 0.00 0.00 0.00 3.95
185 188 2.914777 CTTGGAGGGCGAGCTGCTAC 62.915 65.000 0.15 0.00 45.43 3.58
196 199 0.181114 TGGCGATGATTCTTGGAGGG 59.819 55.000 0.00 0.00 0.00 4.30
206 210 1.144057 GAACTCCGGTGGCGATGAT 59.856 57.895 8.63 0.00 0.00 2.45
255 259 1.153369 GCGAGCTGGATTGGTGCTA 60.153 57.895 0.00 0.00 37.16 3.49
360 364 1.001860 AGCAAGCACTCTCTCCTTGTC 59.998 52.381 0.00 0.00 38.50 3.18
399 403 3.249973 GAAGCAACCCGCCGACAAC 62.250 63.158 0.00 0.00 44.04 3.32
981 987 5.014808 ACATAATCTTTCAAGGCCAATGC 57.985 39.130 5.01 0.00 0.00 3.56
982 988 6.870769 AGAACATAATCTTTCAAGGCCAATG 58.129 36.000 5.01 3.36 0.00 2.82
983 989 6.664816 TGAGAACATAATCTTTCAAGGCCAAT 59.335 34.615 5.01 0.00 0.00 3.16
984 990 6.009589 TGAGAACATAATCTTTCAAGGCCAA 58.990 36.000 5.01 0.00 0.00 4.52
985 991 5.569355 TGAGAACATAATCTTTCAAGGCCA 58.431 37.500 5.01 0.00 0.00 5.36
986 992 5.882557 TCTGAGAACATAATCTTTCAAGGCC 59.117 40.000 0.00 0.00 0.00 5.19
987 993 6.597280 AGTCTGAGAACATAATCTTTCAAGGC 59.403 38.462 0.00 0.00 0.00 4.35
988 994 8.449397 CAAGTCTGAGAACATAATCTTTCAAGG 58.551 37.037 0.00 0.00 0.00 3.61
989 995 8.997323 ACAAGTCTGAGAACATAATCTTTCAAG 58.003 33.333 0.00 0.00 0.00 3.02
1075 1096 2.751259 TGTCATCTGAAGGCTTCATTGC 59.249 45.455 28.67 21.57 39.30 3.56
1482 1503 1.266718 GCAACGAAGACAAGAATGGCA 59.733 47.619 0.00 0.00 36.86 4.92
1533 1554 1.422531 TTGCAGGAAGGCATTGGTTT 58.577 45.000 0.00 0.00 44.48 3.27
1564 1585 7.911651 AGACAAGAGATAAAATGAGGTTCTCA 58.088 34.615 0.00 0.00 44.99 3.27
1687 1709 1.271876 CGACATCGACATCACACCAG 58.728 55.000 0.00 0.00 43.02 4.00
1759 1781 6.852853 CACACAACTTATTAACAAGCTCACTG 59.147 38.462 0.00 0.00 0.00 3.66
1778 1800 6.039605 CCAATATATTCATCACTGCCACACAA 59.960 38.462 0.00 0.00 0.00 3.33
1792 1814 6.464892 CCTGAGAGCCTGAACCAATATATTCA 60.465 42.308 0.00 0.00 33.82 2.57
1881 1903 6.659745 ATTTATACACATGGCAGCATTCAT 57.340 33.333 0.00 0.00 0.00 2.57
2032 2054 6.752351 CAGCGTGAACTGACATAGTAACTATT 59.248 38.462 0.00 0.00 39.18 1.73
2072 2200 0.533032 GGCAGGACTTCTAGTCGCTT 59.467 55.000 1.12 0.00 45.96 4.68
2139 2268 3.829601 ACTCTAGAGACCACCACAAGAAG 59.170 47.826 26.57 0.00 0.00 2.85
2229 2358 3.872182 GCACGACACTCTAGAGACTATCA 59.128 47.826 26.57 0.00 0.00 2.15
2267 2396 4.767255 CAGGCAGGCGGTGGACTC 62.767 72.222 0.00 0.00 0.00 3.36
2277 2406 1.452651 CCATACAGTGCCAGGCAGG 60.453 63.158 16.83 13.24 40.08 4.85
2278 2407 1.452651 CCCATACAGTGCCAGGCAG 60.453 63.158 16.83 6.78 40.08 4.85
2279 2408 0.912006 TACCCATACAGTGCCAGGCA 60.912 55.000 11.22 11.22 35.60 4.75
2280 2409 0.474184 ATACCCATACAGTGCCAGGC 59.526 55.000 3.66 3.66 0.00 4.85
2281 2410 2.303022 CCTATACCCATACAGTGCCAGG 59.697 54.545 0.00 0.00 0.00 4.45
2282 2411 2.972713 ACCTATACCCATACAGTGCCAG 59.027 50.000 0.00 0.00 0.00 4.85
2283 2412 3.054779 ACCTATACCCATACAGTGCCA 57.945 47.619 0.00 0.00 0.00 4.92
2284 2413 4.081087 CCATACCTATACCCATACAGTGCC 60.081 50.000 0.00 0.00 0.00 5.01
2285 2414 4.623171 GCCATACCTATACCCATACAGTGC 60.623 50.000 0.00 0.00 0.00 4.40
2286 2415 4.381612 CGCCATACCTATACCCATACAGTG 60.382 50.000 0.00 0.00 0.00 3.66
2287 2416 3.767673 CGCCATACCTATACCCATACAGT 59.232 47.826 0.00 0.00 0.00 3.55
2288 2417 3.767673 ACGCCATACCTATACCCATACAG 59.232 47.826 0.00 0.00 0.00 2.74
2289 2418 3.512329 CACGCCATACCTATACCCATACA 59.488 47.826 0.00 0.00 0.00 2.29
2290 2419 3.677976 GCACGCCATACCTATACCCATAC 60.678 52.174 0.00 0.00 0.00 2.39
2291 2420 2.498481 GCACGCCATACCTATACCCATA 59.502 50.000 0.00 0.00 0.00 2.74
2292 2421 1.278127 GCACGCCATACCTATACCCAT 59.722 52.381 0.00 0.00 0.00 4.00
2293 2422 0.682852 GCACGCCATACCTATACCCA 59.317 55.000 0.00 0.00 0.00 4.51
2294 2423 0.682852 TGCACGCCATACCTATACCC 59.317 55.000 0.00 0.00 0.00 3.69
2295 2424 1.337823 CCTGCACGCCATACCTATACC 60.338 57.143 0.00 0.00 0.00 2.73
2296 2425 1.939838 GCCTGCACGCCATACCTATAC 60.940 57.143 0.00 0.00 0.00 1.47
2297 2426 0.320374 GCCTGCACGCCATACCTATA 59.680 55.000 0.00 0.00 0.00 1.31
2298 2427 1.071471 GCCTGCACGCCATACCTAT 59.929 57.895 0.00 0.00 0.00 2.57
2299 2428 2.504032 GCCTGCACGCCATACCTA 59.496 61.111 0.00 0.00 0.00 3.08
2314 2443 2.520657 AAATCCAAGGGAGGCTGGCC 62.521 60.000 3.00 3.00 34.05 5.36
2315 2444 0.615827 AAAATCCAAGGGAGGCTGGC 60.616 55.000 0.00 0.00 34.05 4.85
2316 2445 2.659428 CTAAAATCCAAGGGAGGCTGG 58.341 52.381 0.00 0.00 34.05 4.85
2317 2446 2.024941 ACCTAAAATCCAAGGGAGGCTG 60.025 50.000 0.00 0.00 37.18 4.85
2318 2447 2.242452 GACCTAAAATCCAAGGGAGGCT 59.758 50.000 0.00 0.00 37.18 4.58
2319 2448 2.242452 AGACCTAAAATCCAAGGGAGGC 59.758 50.000 0.00 0.00 37.18 4.70
2320 2449 4.263949 ACAAGACCTAAAATCCAAGGGAGG 60.264 45.833 0.00 0.00 37.18 4.30
2321 2450 4.923415 ACAAGACCTAAAATCCAAGGGAG 58.077 43.478 0.00 0.00 37.18 4.30
2322 2451 5.333566 AACAAGACCTAAAATCCAAGGGA 57.666 39.130 0.00 0.00 37.18 4.20
2323 2452 5.538433 TGAAACAAGACCTAAAATCCAAGGG 59.462 40.000 0.00 0.00 37.18 3.95
2324 2453 6.447162 GTGAAACAAGACCTAAAATCCAAGG 58.553 40.000 0.00 0.00 36.32 3.61
2325 2454 6.447162 GGTGAAACAAGACCTAAAATCCAAG 58.553 40.000 0.00 0.00 39.98 3.61
2326 2455 5.009210 CGGTGAAACAAGACCTAAAATCCAA 59.991 40.000 0.00 0.00 39.98 3.53
2327 2456 4.517453 CGGTGAAACAAGACCTAAAATCCA 59.483 41.667 0.00 0.00 39.98 3.41
2328 2457 4.758165 TCGGTGAAACAAGACCTAAAATCC 59.242 41.667 0.00 0.00 39.98 3.01
2329 2458 5.106673 CCTCGGTGAAACAAGACCTAAAATC 60.107 44.000 0.00 0.00 39.98 2.17
2330 2459 4.760204 CCTCGGTGAAACAAGACCTAAAAT 59.240 41.667 0.00 0.00 39.98 1.82
2331 2460 4.131596 CCTCGGTGAAACAAGACCTAAAA 58.868 43.478 0.00 0.00 39.98 1.52
2332 2461 3.388676 TCCTCGGTGAAACAAGACCTAAA 59.611 43.478 0.00 0.00 39.98 1.85
2333 2462 2.967201 TCCTCGGTGAAACAAGACCTAA 59.033 45.455 0.00 0.00 39.98 2.69
2334 2463 2.600790 TCCTCGGTGAAACAAGACCTA 58.399 47.619 0.00 0.00 39.98 3.08
2335 2464 1.420430 TCCTCGGTGAAACAAGACCT 58.580 50.000 0.00 0.00 39.98 3.85
2336 2465 2.249844 TTCCTCGGTGAAACAAGACC 57.750 50.000 0.00 0.00 39.98 3.85
2337 2466 3.875134 TCTTTTCCTCGGTGAAACAAGAC 59.125 43.478 0.61 0.00 39.98 3.01
2338 2467 4.127171 CTCTTTTCCTCGGTGAAACAAGA 58.873 43.478 0.61 2.33 39.98 3.02
2339 2468 4.127171 TCTCTTTTCCTCGGTGAAACAAG 58.873 43.478 0.61 2.50 39.98 3.16
2340 2469 4.127171 CTCTCTTTTCCTCGGTGAAACAA 58.873 43.478 0.61 0.00 39.98 2.83
2341 2470 3.386726 TCTCTCTTTTCCTCGGTGAAACA 59.613 43.478 0.61 0.00 39.98 2.83
2342 2471 3.991367 TCTCTCTTTTCCTCGGTGAAAC 58.009 45.455 0.61 0.00 34.13 2.78
2343 2472 4.101119 ACTTCTCTCTTTTCCTCGGTGAAA 59.899 41.667 0.00 0.00 32.60 2.69
2344 2473 3.641906 ACTTCTCTCTTTTCCTCGGTGAA 59.358 43.478 0.00 0.00 0.00 3.18
2345 2474 3.231818 ACTTCTCTCTTTTCCTCGGTGA 58.768 45.455 0.00 0.00 0.00 4.02
2346 2475 3.669251 ACTTCTCTCTTTTCCTCGGTG 57.331 47.619 0.00 0.00 0.00 4.94
2347 2476 3.898741 AGAACTTCTCTCTTTTCCTCGGT 59.101 43.478 0.00 0.00 0.00 4.69
2348 2477 4.241681 CAGAACTTCTCTCTTTTCCTCGG 58.758 47.826 0.00 0.00 29.07 4.63
2349 2478 4.021894 TCCAGAACTTCTCTCTTTTCCTCG 60.022 45.833 0.00 0.00 29.07 4.63
2350 2479 5.476091 TCCAGAACTTCTCTCTTTTCCTC 57.524 43.478 0.00 0.00 29.07 3.71
2351 2480 7.560796 TTATCCAGAACTTCTCTCTTTTCCT 57.439 36.000 0.00 0.00 29.07 3.36
2352 2481 8.800370 ATTTATCCAGAACTTCTCTCTTTTCC 57.200 34.615 0.00 0.00 29.07 3.13
2354 2483 9.799106 TCAATTTATCCAGAACTTCTCTCTTTT 57.201 29.630 0.00 0.00 29.07 2.27
2355 2484 9.225436 GTCAATTTATCCAGAACTTCTCTCTTT 57.775 33.333 0.00 0.00 29.07 2.52
2356 2485 8.378565 TGTCAATTTATCCAGAACTTCTCTCTT 58.621 33.333 0.00 0.00 29.07 2.85
2357 2486 7.911651 TGTCAATTTATCCAGAACTTCTCTCT 58.088 34.615 0.00 0.00 29.07 3.10
2358 2487 8.553459 TTGTCAATTTATCCAGAACTTCTCTC 57.447 34.615 0.00 0.00 29.07 3.20
2359 2488 8.954350 CATTGTCAATTTATCCAGAACTTCTCT 58.046 33.333 0.00 0.00 33.23 3.10
2360 2489 7.699812 GCATTGTCAATTTATCCAGAACTTCTC 59.300 37.037 0.00 0.00 0.00 2.87
2361 2490 7.395489 AGCATTGTCAATTTATCCAGAACTTCT 59.605 33.333 0.00 0.00 0.00 2.85
2362 2491 7.487189 CAGCATTGTCAATTTATCCAGAACTTC 59.513 37.037 0.00 0.00 0.00 3.01
2363 2492 7.177216 TCAGCATTGTCAATTTATCCAGAACTT 59.823 33.333 0.00 0.00 0.00 2.66
2364 2493 6.660521 TCAGCATTGTCAATTTATCCAGAACT 59.339 34.615 0.00 0.00 0.00 3.01
2365 2494 6.855836 TCAGCATTGTCAATTTATCCAGAAC 58.144 36.000 0.00 0.00 0.00 3.01
2366 2495 7.465353 TTCAGCATTGTCAATTTATCCAGAA 57.535 32.000 0.00 0.00 0.00 3.02
2367 2496 7.649533 ATTCAGCATTGTCAATTTATCCAGA 57.350 32.000 0.00 0.00 0.00 3.86
2368 2497 7.977293 TCAATTCAGCATTGTCAATTTATCCAG 59.023 33.333 0.00 0.00 42.79 3.86
2369 2498 7.838884 TCAATTCAGCATTGTCAATTTATCCA 58.161 30.769 0.00 0.00 42.79 3.41
2370 2499 8.706492 TTCAATTCAGCATTGTCAATTTATCC 57.294 30.769 0.00 0.00 42.79 2.59
2371 2500 9.362539 ACTTCAATTCAGCATTGTCAATTTATC 57.637 29.630 0.00 0.00 42.79 1.75
2373 2502 9.624697 GTACTTCAATTCAGCATTGTCAATTTA 57.375 29.630 0.00 0.00 42.79 1.40
2374 2503 8.362639 AGTACTTCAATTCAGCATTGTCAATTT 58.637 29.630 0.00 0.00 42.79 1.82
2375 2504 7.889469 AGTACTTCAATTCAGCATTGTCAATT 58.111 30.769 0.00 0.00 42.79 2.32
2376 2505 7.458409 AGTACTTCAATTCAGCATTGTCAAT 57.542 32.000 0.00 0.00 42.79 2.57
2377 2506 6.882610 AGTACTTCAATTCAGCATTGTCAA 57.117 33.333 0.00 0.00 42.79 3.18
2378 2507 6.486320 TCAAGTACTTCAATTCAGCATTGTCA 59.514 34.615 4.77 0.00 42.79 3.58
2379 2508 6.902341 TCAAGTACTTCAATTCAGCATTGTC 58.098 36.000 4.77 0.00 42.79 3.18
2380 2509 6.882610 TCAAGTACTTCAATTCAGCATTGT 57.117 33.333 4.77 0.00 42.79 2.71
2381 2510 7.274904 CCATTCAAGTACTTCAATTCAGCATTG 59.725 37.037 4.77 0.00 43.51 2.82
2382 2511 7.039504 ACCATTCAAGTACTTCAATTCAGCATT 60.040 33.333 4.77 0.00 0.00 3.56
2383 2512 6.435277 ACCATTCAAGTACTTCAATTCAGCAT 59.565 34.615 4.77 0.00 0.00 3.79
2384 2513 5.769662 ACCATTCAAGTACTTCAATTCAGCA 59.230 36.000 4.77 0.00 0.00 4.41
2385 2514 6.150140 AGACCATTCAAGTACTTCAATTCAGC 59.850 38.462 4.77 0.00 0.00 4.26
2386 2515 7.678947 AGACCATTCAAGTACTTCAATTCAG 57.321 36.000 4.77 0.00 0.00 3.02
2387 2516 9.219603 CTTAGACCATTCAAGTACTTCAATTCA 57.780 33.333 4.77 0.00 0.00 2.57
2388 2517 9.220767 ACTTAGACCATTCAAGTACTTCAATTC 57.779 33.333 4.77 0.43 30.89 2.17
2389 2518 9.574516 AACTTAGACCATTCAAGTACTTCAATT 57.425 29.630 4.77 0.00 32.35 2.32
2392 2521 9.871238 GATAACTTAGACCATTCAAGTACTTCA 57.129 33.333 4.77 0.00 32.35 3.02
2393 2522 9.871238 TGATAACTTAGACCATTCAAGTACTTC 57.129 33.333 4.77 0.00 32.35 3.01
2438 2567 0.995024 ACTAGATTTGTGCAGGGGCT 59.005 50.000 0.00 0.00 41.91 5.19
2458 2587 4.142687 CGTGAGTTTCAAAGACAAGTGGTT 60.143 41.667 0.00 0.00 0.00 3.67
2563 2695 3.144506 AGAAGCATGCCCTATTGAATCG 58.855 45.455 15.66 0.00 0.00 3.34
2938 3070 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2939 3071 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
2940 3072 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2941 3073 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
2942 3074 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2943 3075 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
2944 3076 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2945 3077 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2946 3078 2.165845 AGACAAGTAATTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
2947 3079 2.173519 AGACAAGTAATTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
2948 3080 2.667473 AGACAAGTAATTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
2949 3081 6.470557 TTTTAAGACAAGTAATTCCGGACG 57.529 37.500 1.83 0.00 0.00 4.79
2950 3082 8.508875 TCATTTTTAAGACAAGTAATTCCGGAC 58.491 33.333 1.83 0.00 0.00 4.79
2951 3083 8.624367 TCATTTTTAAGACAAGTAATTCCGGA 57.376 30.769 0.00 0.00 0.00 5.14
2952 3084 9.855021 ATTCATTTTTAAGACAAGTAATTCCGG 57.145 29.630 0.00 0.00 0.00 5.14
3005 3137 9.734984 TCGGAGAAATGTATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
3006 3138 8.516234 GTCGGAGAAATGTATGTATCTAGATGT 58.484 37.037 15.79 4.15 39.69 3.06
3007 3139 8.515414 TGTCGGAGAAATGTATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
3008 3140 8.637196 TGTCGGAGAAATGTATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
3009 3141 8.459911 TTGTCGGAGAAATGTATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
3010 3142 8.353684 ACTTGTCGGAGAAATGTATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
3011 3143 8.234136 ACTTGTCGGAGAAATGTATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
3012 3144 7.113658 ACTTGTCGGAGAAATGTATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
3013 3145 8.867112 TTACTTGTCGGAGAAATGTATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
3014 3146 9.832445 AATTACTTGTCGGAGAAATGTATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
3015 3147 9.309516 GAATTACTTGTCGGAGAAATGTATGTA 57.690 33.333 0.00 0.00 39.69 2.29
3016 3148 7.280205 GGAATTACTTGTCGGAGAAATGTATGT 59.720 37.037 0.00 0.00 39.69 2.29
3017 3149 7.516785 CGGAATTACTTGTCGGAGAAATGTATG 60.517 40.741 0.00 0.00 39.69 2.39
3018 3150 6.479001 CGGAATTACTTGTCGGAGAAATGTAT 59.521 38.462 0.00 0.00 39.69 2.29
3019 3151 5.808540 CGGAATTACTTGTCGGAGAAATGTA 59.191 40.000 0.00 0.00 39.69 2.29
3020 3152 4.630069 CGGAATTACTTGTCGGAGAAATGT 59.370 41.667 0.00 0.00 39.69 2.71
3021 3153 4.868171 TCGGAATTACTTGTCGGAGAAATG 59.132 41.667 0.00 0.00 39.69 2.32
3022 3154 5.080969 TCGGAATTACTTGTCGGAGAAAT 57.919 39.130 0.00 0.00 39.69 2.17
3023 3155 4.524316 TCGGAATTACTTGTCGGAGAAA 57.476 40.909 0.00 0.00 39.69 2.52
3024 3156 4.240096 GTTCGGAATTACTTGTCGGAGAA 58.760 43.478 0.00 0.00 39.69 2.87
3025 3157 3.671433 CGTTCGGAATTACTTGTCGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
3026 3158 2.597305 CGTTCGGAATTACTTGTCGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3027 3159 2.598589 CGTTCGGAATTACTTGTCGGA 58.401 47.619 0.00 0.00 0.00 4.55
3028 3160 1.657094 CCGTTCGGAATTACTTGTCGG 59.343 52.381 5.19 0.00 0.00 4.79
3029 3161 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3030 3162 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3031 3163 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3032 3164 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3033 3165 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3034 3166 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3035 3167 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3036 3168 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3037 3169 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3038 3170 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3039 3171 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3040 3172 2.158564 ACATATACTCCCTCCGTTCGGA 60.159 50.000 13.34 13.34 0.00 4.55
3041 3173 2.236766 ACATATACTCCCTCCGTTCGG 58.763 52.381 4.74 4.74 0.00 4.30
3042 3174 5.640189 ATAACATATACTCCCTCCGTTCG 57.360 43.478 0.00 0.00 0.00 3.95
3043 3175 7.828223 TCTCTATAACATATACTCCCTCCGTTC 59.172 40.741 0.00 0.00 0.00 3.95
3044 3176 7.696981 TCTCTATAACATATACTCCCTCCGTT 58.303 38.462 0.00 0.00 0.00 4.44
3045 3177 7.268212 TCTCTATAACATATACTCCCTCCGT 57.732 40.000 0.00 0.00 0.00 4.69
3046 3178 8.577048 TTTCTCTATAACATATACTCCCTCCG 57.423 38.462 0.00 0.00 0.00 4.63
3048 3180 9.810545 GCATTTCTCTATAACATATACTCCCTC 57.189 37.037 0.00 0.00 0.00 4.30
3049 3181 8.763601 GGCATTTCTCTATAACATATACTCCCT 58.236 37.037 0.00 0.00 0.00 4.20
3050 3182 8.763601 AGGCATTTCTCTATAACATATACTCCC 58.236 37.037 0.00 0.00 0.00 4.30
3152 3285 6.039382 ACAAGTCCTGTTTCACAAACTTATCC 59.961 38.462 1.11 0.00 41.90 2.59
3167 3300 5.041191 ACAATCAGAAAGACAAGTCCTGT 57.959 39.130 0.00 0.00 42.61 4.00
3353 3492 6.508030 TTGGGGATTAGAACAGCACATATA 57.492 37.500 0.00 0.00 0.00 0.86
3401 3540 2.926200 CTCGTACAAATGTCTCTGCAGG 59.074 50.000 15.13 4.77 0.00 4.85
3424 3563 3.640000 GGGATGAATGCGCCGTCG 61.640 66.667 4.18 0.00 39.07 5.12
3430 3569 1.406180 TCAGCAAATGGGATGAATGCG 59.594 47.619 0.00 0.00 41.72 4.73
3697 3836 2.948720 GCTTCCGCTGTCACCCTCT 61.949 63.158 0.00 0.00 0.00 3.69
3957 4096 7.981225 GGGAGTATAATTTTGCATGTCAAATGT 59.019 33.333 13.57 8.81 43.53 2.71
3958 4097 8.199449 AGGGAGTATAATTTTGCATGTCAAATG 58.801 33.333 13.57 0.00 43.53 2.32
3959 4098 8.310122 AGGGAGTATAATTTTGCATGTCAAAT 57.690 30.769 13.57 7.12 43.53 2.32
3960 4099 7.147915 GGAGGGAGTATAATTTTGCATGTCAAA 60.148 37.037 10.11 10.11 42.50 2.69
3961 4100 6.321181 GGAGGGAGTATAATTTTGCATGTCAA 59.679 38.462 0.00 0.00 0.00 3.18
3962 4101 5.827797 GGAGGGAGTATAATTTTGCATGTCA 59.172 40.000 0.00 0.00 0.00 3.58
3963 4102 5.049405 CGGAGGGAGTATAATTTTGCATGTC 60.049 44.000 0.00 0.00 0.00 3.06
3964 4103 4.821805 CGGAGGGAGTATAATTTTGCATGT 59.178 41.667 0.00 0.00 0.00 3.21
3965 4104 4.821805 ACGGAGGGAGTATAATTTTGCATG 59.178 41.667 0.00 0.00 0.00 4.06
3966 4105 5.048846 ACGGAGGGAGTATAATTTTGCAT 57.951 39.130 0.00 0.00 0.00 3.96
3967 4106 4.497291 ACGGAGGGAGTATAATTTTGCA 57.503 40.909 0.00 0.00 0.00 4.08
3968 4107 6.764560 TCTTTACGGAGGGAGTATAATTTTGC 59.235 38.462 0.00 0.00 0.00 3.68
3969 4108 8.726870 TTCTTTACGGAGGGAGTATAATTTTG 57.273 34.615 0.00 0.00 0.00 2.44
3970 4109 9.916360 ATTTCTTTACGGAGGGAGTATAATTTT 57.084 29.630 0.00 0.00 0.00 1.82
3976 4115 9.597681 TCTTATATTTCTTTACGGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
3977 4116 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
3978 4117 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
3979 4118 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3980 4119 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3981 4120 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3982 4121 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3983 4122 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3984 4123 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3985 4124 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3989 4128 8.880750 GTGGTCTAAACGCTCTTATATTTCTTT 58.119 33.333 0.00 0.00 0.00 2.52
3990 4129 8.258708 AGTGGTCTAAACGCTCTTATATTTCTT 58.741 33.333 0.00 0.00 0.00 2.52
3991 4130 7.783042 AGTGGTCTAAACGCTCTTATATTTCT 58.217 34.615 0.00 0.00 0.00 2.52
3992 4131 8.966194 GTAGTGGTCTAAACGCTCTTATATTTC 58.034 37.037 0.00 0.00 0.00 2.17
3993 4132 8.693625 AGTAGTGGTCTAAACGCTCTTATATTT 58.306 33.333 0.00 0.00 0.00 1.40
3994 4133 8.235359 AGTAGTGGTCTAAACGCTCTTATATT 57.765 34.615 0.00 0.00 0.00 1.28
3995 4134 7.820578 AGTAGTGGTCTAAACGCTCTTATAT 57.179 36.000 0.00 0.00 0.00 0.86
3996 4135 7.636150 AAGTAGTGGTCTAAACGCTCTTATA 57.364 36.000 0.00 0.00 0.00 0.98
3997 4136 6.527057 AAGTAGTGGTCTAAACGCTCTTAT 57.473 37.500 0.00 0.00 0.00 1.73
3998 4137 5.972107 AAGTAGTGGTCTAAACGCTCTTA 57.028 39.130 0.00 0.00 0.00 2.10
3999 4138 4.868314 AAGTAGTGGTCTAAACGCTCTT 57.132 40.909 0.00 0.00 0.00 2.85
4000 4139 4.868314 AAAGTAGTGGTCTAAACGCTCT 57.132 40.909 0.00 0.00 0.00 4.09
4001 4140 5.707931 ACTAAAGTAGTGGTCTAAACGCTC 58.292 41.667 0.00 0.00 37.69 5.03
4002 4141 5.718724 ACTAAAGTAGTGGTCTAAACGCT 57.281 39.130 0.00 0.00 37.69 5.07
4041 4180 9.213777 ACATGATACTCCCTCTGTAAAGAAATA 57.786 33.333 0.00 0.00 0.00 1.40
4042 4181 8.095452 ACATGATACTCCCTCTGTAAAGAAAT 57.905 34.615 0.00 0.00 0.00 2.17
4043 4182 7.496346 ACATGATACTCCCTCTGTAAAGAAA 57.504 36.000 0.00 0.00 0.00 2.52
4044 4183 7.496346 AACATGATACTCCCTCTGTAAAGAA 57.504 36.000 0.00 0.00 0.00 2.52
4045 4184 8.783660 ATAACATGATACTCCCTCTGTAAAGA 57.216 34.615 0.00 0.00 0.00 2.52
4046 4185 9.265901 CAATAACATGATACTCCCTCTGTAAAG 57.734 37.037 0.00 0.00 0.00 1.85
4047 4186 7.715249 GCAATAACATGATACTCCCTCTGTAAA 59.285 37.037 0.00 0.00 0.00 2.01
4048 4187 7.217200 GCAATAACATGATACTCCCTCTGTAA 58.783 38.462 0.00 0.00 0.00 2.41
4049 4188 6.239600 GGCAATAACATGATACTCCCTCTGTA 60.240 42.308 0.00 0.00 0.00 2.74
4050 4189 5.455326 GGCAATAACATGATACTCCCTCTGT 60.455 44.000 0.00 0.00 0.00 3.41
4051 4190 4.999950 GGCAATAACATGATACTCCCTCTG 59.000 45.833 0.00 0.00 0.00 3.35
4052 4191 4.660303 TGGCAATAACATGATACTCCCTCT 59.340 41.667 0.00 0.00 0.00 3.69
4053 4192 4.973168 TGGCAATAACATGATACTCCCTC 58.027 43.478 0.00 0.00 0.00 4.30
4054 4193 5.589367 ATGGCAATAACATGATACTCCCT 57.411 39.130 0.00 0.00 0.00 4.20
4055 4194 6.265196 TGAAATGGCAATAACATGATACTCCC 59.735 38.462 0.00 0.00 0.00 4.30
4073 4236 9.559958 GTAATTCAACAGTGAAGTATGAAATGG 57.440 33.333 0.00 0.00 46.75 3.16
4191 4355 1.839994 CAGAGGACTCCCCAATAGCAA 59.160 52.381 0.00 0.00 37.41 3.91
4351 4515 1.519455 CTCTTCCATGTCGGACGGC 60.519 63.158 3.34 0.00 46.36 5.68
4354 4518 0.802607 GACGCTCTTCCATGTCGGAC 60.803 60.000 0.00 0.00 46.36 4.79
4519 4683 3.999285 AGGCTGGACTCCGGGTCT 61.999 66.667 18.67 0.00 43.97 3.85
4561 4725 4.698625 AGGCTCGGTTCCGGGTCT 62.699 66.667 12.71 12.71 40.30 3.85
4599 4763 3.434739 GCTCATCATTTCTGGGTCTGGAT 60.435 47.826 0.00 0.00 0.00 3.41
4663 4827 2.069776 CTGCCTTTCCAGGTCCAGA 58.930 57.895 0.00 0.00 43.18 3.86
4703 4867 2.596851 GCTTCTCCAGGTCCAGGCA 61.597 63.158 0.00 0.00 0.00 4.75
4777 4941 5.777850 TGCTCATCCCATAAATGTCATTG 57.222 39.130 0.00 0.00 0.00 2.82
4788 4952 1.152610 GCCCACATGCTCATCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
4799 4963 1.003580 ACTCACTTTGATCGCCCACAT 59.996 47.619 0.00 0.00 0.00 3.21
4805 4974 4.046938 TCCATCTACTCACTTTGATCGC 57.953 45.455 0.00 0.00 0.00 4.58
4815 4984 3.107601 CAGGGGTTCTTCCATCTACTCA 58.892 50.000 0.00 0.00 38.11 3.41
4915 5085 6.791867 TCAAGTGCCATAGTAGTACAAGAT 57.208 37.500 2.52 0.00 0.00 2.40
4918 5088 6.941857 TGAATCAAGTGCCATAGTAGTACAA 58.058 36.000 2.52 0.00 0.00 2.41
5055 5225 1.468985 ACCAGAGTCTCATCTGTCGG 58.531 55.000 1.94 0.00 44.35 4.79
5056 5226 2.489722 TGAACCAGAGTCTCATCTGTCG 59.510 50.000 1.94 0.00 44.35 4.35
5088 5258 7.927048 TGAAAGATCAATCATCTAGCAACATG 58.073 34.615 0.00 0.00 41.47 3.21
5135 5305 7.716799 ATGATAATTAGCACTCCCACAAAAA 57.283 32.000 5.38 0.00 0.00 1.94
5136 5306 7.716799 AATGATAATTAGCACTCCCACAAAA 57.283 32.000 5.38 0.00 0.00 2.44
5137 5307 8.815565 TTAATGATAATTAGCACTCCCACAAA 57.184 30.769 5.38 0.00 0.00 2.83
5138 5308 8.815565 TTTAATGATAATTAGCACTCCCACAA 57.184 30.769 5.38 0.00 0.00 3.33
5139 5309 8.995027 ATTTAATGATAATTAGCACTCCCACA 57.005 30.769 5.38 0.00 0.00 4.17
5140 5310 9.289782 AGATTTAATGATAATTAGCACTCCCAC 57.710 33.333 5.38 0.00 0.00 4.61
5141 5311 9.866655 AAGATTTAATGATAATTAGCACTCCCA 57.133 29.630 5.38 0.00 0.00 4.37
5181 5351 5.707242 AATCTGAGTAACGAGTGAACAGA 57.293 39.130 0.00 0.00 37.33 3.41
5182 5352 6.153067 AGAAATCTGAGTAACGAGTGAACAG 58.847 40.000 0.00 0.00 0.00 3.16
5183 5353 6.016192 AGAGAAATCTGAGTAACGAGTGAACA 60.016 38.462 0.00 0.00 0.00 3.18
5265 5435 5.877012 CAGTGCTACAATCCAACATCTAACT 59.123 40.000 0.00 0.00 0.00 2.24
5307 5477 8.519492 GCATTATGCATACCGTCAAATTTTAT 57.481 30.769 12.80 0.00 44.26 1.40
5324 5494 5.247084 AGAGATTCAGATCCAGCATTATGC 58.753 41.667 9.46 9.46 36.96 3.14
5377 5547 5.848369 AGATCAATCATCCCAGGTTCTCATA 59.152 40.000 0.00 0.00 30.71 2.15
5423 5593 4.039973 TCCATGTCCTTTTAAGACACGTCT 59.960 41.667 0.00 0.00 46.43 4.18
5424 5594 4.312443 TCCATGTCCTTTTAAGACACGTC 58.688 43.478 0.00 0.00 46.43 4.34
5425 5595 4.345859 TCCATGTCCTTTTAAGACACGT 57.654 40.909 0.00 0.00 46.43 4.49
5426 5596 4.378459 GCTTCCATGTCCTTTTAAGACACG 60.378 45.833 0.00 0.00 46.43 4.49
5427 5597 4.082733 GGCTTCCATGTCCTTTTAAGACAC 60.083 45.833 0.00 0.00 46.43 3.67
5428 5598 7.201691 AATGGCTTCCATGTCCTTTTAAGACA 61.202 38.462 0.00 0.00 44.40 3.41
5452 5631 3.418047 GGGATTCTTCCAACCTCGAAAA 58.582 45.455 0.00 0.00 44.60 2.29
5462 5641 3.077391 ACTTCCAATTGGGGATTCTTCCA 59.923 43.478 24.29 0.00 44.60 3.53
5464 5643 5.245977 TCAAACTTCCAATTGGGGATTCTTC 59.754 40.000 24.29 0.00 36.67 2.87
5605 5800 6.268825 ACTACTTTCGATAGCTTCAGTCAA 57.731 37.500 2.50 0.00 0.00 3.18
5606 5801 5.899120 ACTACTTTCGATAGCTTCAGTCA 57.101 39.130 2.50 0.00 0.00 3.41
5643 5838 4.463891 ACCTTTGCATCACTTGAATAAGGG 59.536 41.667 10.38 7.81 38.73 3.95
5645 5840 6.088824 GTCACCTTTGCATCACTTGAATAAG 58.911 40.000 0.00 0.00 39.86 1.73
5647 5842 4.154015 CGTCACCTTTGCATCACTTGAATA 59.846 41.667 0.00 0.00 0.00 1.75
5648 5843 3.058016 CGTCACCTTTGCATCACTTGAAT 60.058 43.478 0.00 0.00 0.00 2.57
5650 5845 1.872952 CGTCACCTTTGCATCACTTGA 59.127 47.619 0.00 0.00 0.00 3.02
5651 5846 1.872952 TCGTCACCTTTGCATCACTTG 59.127 47.619 0.00 0.00 0.00 3.16
5652 5847 2.254546 TCGTCACCTTTGCATCACTT 57.745 45.000 0.00 0.00 0.00 3.16
5653 5848 2.289631 TGATCGTCACCTTTGCATCACT 60.290 45.455 0.00 0.00 0.00 3.41
5654 5849 2.076100 TGATCGTCACCTTTGCATCAC 58.924 47.619 0.00 0.00 0.00 3.06
5655 5850 2.470983 TGATCGTCACCTTTGCATCA 57.529 45.000 0.00 0.00 0.00 3.07
5656 5851 2.476854 GCTTGATCGTCACCTTTGCATC 60.477 50.000 0.00 0.00 0.00 3.91
5657 5852 1.470098 GCTTGATCGTCACCTTTGCAT 59.530 47.619 0.00 0.00 0.00 3.96
5658 5853 0.874390 GCTTGATCGTCACCTTTGCA 59.126 50.000 0.00 0.00 0.00 4.08
5659 5854 0.179215 CGCTTGATCGTCACCTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
5660 5855 1.126846 GTCGCTTGATCGTCACCTTTG 59.873 52.381 0.00 0.00 0.00 2.77
5661 5856 1.270094 TGTCGCTTGATCGTCACCTTT 60.270 47.619 0.00 0.00 0.00 3.11
5662 5857 0.317160 TGTCGCTTGATCGTCACCTT 59.683 50.000 0.00 0.00 0.00 3.50
5663 5858 0.532573 ATGTCGCTTGATCGTCACCT 59.467 50.000 0.00 0.00 31.24 4.00
5664 5859 0.647410 CATGTCGCTTGATCGTCACC 59.353 55.000 0.00 0.00 31.24 4.02
5665 5860 0.647410 CCATGTCGCTTGATCGTCAC 59.353 55.000 0.00 0.00 31.24 3.67
5666 5861 1.083806 GCCATGTCGCTTGATCGTCA 61.084 55.000 0.00 0.00 32.78 4.35
5667 5862 0.807667 AGCCATGTCGCTTGATCGTC 60.808 55.000 0.00 0.00 34.73 4.20
5668 5863 0.459899 TAGCCATGTCGCTTGATCGT 59.540 50.000 1.62 0.00 40.39 3.73
5669 5864 1.135046 CTAGCCATGTCGCTTGATCG 58.865 55.000 1.62 0.00 40.39 3.69
5670 5865 1.069204 TCCTAGCCATGTCGCTTGATC 59.931 52.381 1.62 0.00 40.39 2.92
5671 5866 1.123077 TCCTAGCCATGTCGCTTGAT 58.877 50.000 1.62 0.00 40.39 2.57
5672 5867 0.901827 TTCCTAGCCATGTCGCTTGA 59.098 50.000 1.62 0.00 40.39 3.02
5673 5868 1.667724 CTTTCCTAGCCATGTCGCTTG 59.332 52.381 1.62 0.62 40.39 4.01
5674 5869 1.555075 TCTTTCCTAGCCATGTCGCTT 59.445 47.619 1.62 0.00 40.39 4.68
5675 5870 1.134670 GTCTTTCCTAGCCATGTCGCT 60.135 52.381 1.96 1.96 43.09 4.93
5676 5871 1.291132 GTCTTTCCTAGCCATGTCGC 58.709 55.000 0.00 0.00 0.00 5.19
5677 5872 1.207089 TGGTCTTTCCTAGCCATGTCG 59.793 52.381 0.00 0.00 37.07 4.35
5678 5873 3.350219 TTGGTCTTTCCTAGCCATGTC 57.650 47.619 0.00 0.00 37.07 3.06
5679 5874 3.562176 CCTTTGGTCTTTCCTAGCCATGT 60.562 47.826 0.00 0.00 37.07 3.21
5680 5875 3.019564 CCTTTGGTCTTTCCTAGCCATG 58.980 50.000 0.00 0.00 37.07 3.66
5681 5876 2.024941 CCCTTTGGTCTTTCCTAGCCAT 60.025 50.000 0.00 0.00 37.07 4.40
5682 5877 1.354368 CCCTTTGGTCTTTCCTAGCCA 59.646 52.381 0.00 0.00 37.07 4.75
5683 5878 1.955683 GCCCTTTGGTCTTTCCTAGCC 60.956 57.143 0.00 0.00 37.07 3.93
5684 5879 1.271926 TGCCCTTTGGTCTTTCCTAGC 60.272 52.381 0.00 0.00 37.07 3.42
5685 5880 2.820197 GTTGCCCTTTGGTCTTTCCTAG 59.180 50.000 0.00 0.00 37.07 3.02
5686 5881 2.445525 AGTTGCCCTTTGGTCTTTCCTA 59.554 45.455 0.00 0.00 37.07 2.94
5687 5882 1.217942 AGTTGCCCTTTGGTCTTTCCT 59.782 47.619 0.00 0.00 37.07 3.36
5688 5883 1.704641 AGTTGCCCTTTGGTCTTTCC 58.295 50.000 0.00 0.00 0.00 3.13
5689 5884 3.826729 ACATAGTTGCCCTTTGGTCTTTC 59.173 43.478 0.00 0.00 0.00 2.62
5690 5885 3.573967 CACATAGTTGCCCTTTGGTCTTT 59.426 43.478 0.00 0.00 0.00 2.52
5691 5886 3.157087 CACATAGTTGCCCTTTGGTCTT 58.843 45.455 0.00 0.00 0.00 3.01
5692 5887 2.375174 TCACATAGTTGCCCTTTGGTCT 59.625 45.455 0.00 0.00 0.00 3.85
5693 5888 2.790433 TCACATAGTTGCCCTTTGGTC 58.210 47.619 0.00 0.00 0.00 4.02
5694 5889 2.969821 TCACATAGTTGCCCTTTGGT 57.030 45.000 0.00 0.00 0.00 3.67
5695 5890 2.493278 CCTTCACATAGTTGCCCTTTGG 59.507 50.000 0.00 0.00 0.00 3.28
5696 5891 3.157087 ACCTTCACATAGTTGCCCTTTG 58.843 45.455 0.00 0.00 0.00 2.77
5697 5892 3.525800 ACCTTCACATAGTTGCCCTTT 57.474 42.857 0.00 0.00 0.00 3.11
5698 5893 4.589908 CTTACCTTCACATAGTTGCCCTT 58.410 43.478 0.00 0.00 0.00 3.95
5699 5894 3.622455 GCTTACCTTCACATAGTTGCCCT 60.622 47.826 0.00 0.00 0.00 5.19
5700 5895 2.683362 GCTTACCTTCACATAGTTGCCC 59.317 50.000 0.00 0.00 0.00 5.36
5701 5896 2.351726 CGCTTACCTTCACATAGTTGCC 59.648 50.000 0.00 0.00 0.00 4.52
5702 5897 3.000727 ACGCTTACCTTCACATAGTTGC 58.999 45.455 0.00 0.00 0.00 4.17
5703 5898 3.370978 CCACGCTTACCTTCACATAGTTG 59.629 47.826 0.00 0.00 0.00 3.16
5704 5899 3.259876 TCCACGCTTACCTTCACATAGTT 59.740 43.478 0.00 0.00 0.00 2.24
5705 5900 2.829720 TCCACGCTTACCTTCACATAGT 59.170 45.455 0.00 0.00 0.00 2.12
5706 5901 3.520290 TCCACGCTTACCTTCACATAG 57.480 47.619 0.00 0.00 0.00 2.23
5707 5902 3.431626 CCATCCACGCTTACCTTCACATA 60.432 47.826 0.00 0.00 0.00 2.29
5708 5903 2.632377 CATCCACGCTTACCTTCACAT 58.368 47.619 0.00 0.00 0.00 3.21
5709 5904 1.338674 CCATCCACGCTTACCTTCACA 60.339 52.381 0.00 0.00 0.00 3.58
5710 5905 1.369625 CCATCCACGCTTACCTTCAC 58.630 55.000 0.00 0.00 0.00 3.18
5711 5906 0.251916 CCCATCCACGCTTACCTTCA 59.748 55.000 0.00 0.00 0.00 3.02
5712 5907 0.463833 CCCCATCCACGCTTACCTTC 60.464 60.000 0.00 0.00 0.00 3.46
5713 5908 1.607612 CCCCATCCACGCTTACCTT 59.392 57.895 0.00 0.00 0.00 3.50
5714 5909 3.043999 GCCCCATCCACGCTTACCT 62.044 63.158 0.00 0.00 0.00 3.08
5715 5910 2.516225 GCCCCATCCACGCTTACC 60.516 66.667 0.00 0.00 0.00 2.85
5716 5911 0.679960 AAAGCCCCATCCACGCTTAC 60.680 55.000 0.00 0.00 41.86 2.34
5717 5912 0.039035 AAAAGCCCCATCCACGCTTA 59.961 50.000 0.00 0.00 41.86 3.09
5718 5913 0.039035 TAAAAGCCCCATCCACGCTT 59.961 50.000 0.00 0.00 44.51 4.68
5719 5914 0.039035 TTAAAAGCCCCATCCACGCT 59.961 50.000 0.00 0.00 0.00 5.07
5720 5915 0.172578 GTTAAAAGCCCCATCCACGC 59.827 55.000 0.00 0.00 0.00 5.34
5721 5916 0.815095 GGTTAAAAGCCCCATCCACG 59.185 55.000 0.00 0.00 0.00 4.94
5722 5917 2.231716 AGGTTAAAAGCCCCATCCAC 57.768 50.000 0.00 0.00 0.00 4.02
5723 5918 3.194620 TCTAGGTTAAAAGCCCCATCCA 58.805 45.455 0.00 0.00 0.00 3.41
5724 5919 3.945640 TCTAGGTTAAAAGCCCCATCC 57.054 47.619 0.00 0.00 0.00 3.51
5725 5920 7.061054 AGTAAATCTAGGTTAAAAGCCCCATC 58.939 38.462 0.00 0.00 0.00 3.51
5726 5921 6.981737 AGTAAATCTAGGTTAAAAGCCCCAT 58.018 36.000 0.00 0.00 0.00 4.00
5727 5922 6.012333 TGAGTAAATCTAGGTTAAAAGCCCCA 60.012 38.462 0.00 0.00 0.00 4.96
5728 5923 6.420638 TGAGTAAATCTAGGTTAAAAGCCCC 58.579 40.000 0.00 0.00 0.00 5.80
5729 5924 7.067129 CCTTGAGTAAATCTAGGTTAAAAGCCC 59.933 40.741 0.00 0.00 43.61 5.19
5730 5925 7.067129 CCCTTGAGTAAATCTAGGTTAAAAGCC 59.933 40.741 5.56 0.00 46.21 4.35
5731 5926 7.415318 GCCCTTGAGTAAATCTAGGTTAAAAGC 60.415 40.741 5.56 0.00 46.21 3.51
5732 5927 7.829706 AGCCCTTGAGTAAATCTAGGTTAAAAG 59.170 37.037 5.56 0.00 46.21 2.27
5733 5928 7.696017 AGCCCTTGAGTAAATCTAGGTTAAAA 58.304 34.615 5.56 0.00 46.21 1.52
5734 5929 7.266905 AGCCCTTGAGTAAATCTAGGTTAAA 57.733 36.000 5.56 0.00 46.21 1.52
5735 5930 6.406624 CGAGCCCTTGAGTAAATCTAGGTTAA 60.407 42.308 5.56 0.00 46.21 2.01
5736 5931 5.068723 CGAGCCCTTGAGTAAATCTAGGTTA 59.931 44.000 5.56 0.00 46.21 2.85
5737 5932 4.141914 CGAGCCCTTGAGTAAATCTAGGTT 60.142 45.833 5.56 0.00 46.21 3.50
5738 5933 3.385111 CGAGCCCTTGAGTAAATCTAGGT 59.615 47.826 5.56 0.00 46.21 3.08
5739 5934 3.385111 ACGAGCCCTTGAGTAAATCTAGG 59.615 47.826 0.00 0.00 46.92 3.02
5740 5935 4.657436 ACGAGCCCTTGAGTAAATCTAG 57.343 45.455 0.00 0.00 0.00 2.43
5741 5936 5.831525 TCATACGAGCCCTTGAGTAAATCTA 59.168 40.000 0.00 0.00 0.00 1.98
5742 5937 4.649674 TCATACGAGCCCTTGAGTAAATCT 59.350 41.667 0.00 0.00 0.00 2.40
5743 5938 4.945246 TCATACGAGCCCTTGAGTAAATC 58.055 43.478 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.