Multiple sequence alignment - TraesCS2D01G417500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G417500 chr2D 100.000 2921 0 0 1 2921 531766219 531769139 0.000000e+00 5395.0
1 TraesCS2D01G417500 chr2D 87.884 1626 132 23 610 2206 448223705 448222116 0.000000e+00 1851.0
2 TraesCS2D01G417500 chr3B 93.022 2207 141 2 1 2206 27469981 27472175 0.000000e+00 3210.0
3 TraesCS2D01G417500 chr3B 87.755 1715 145 24 521 2206 525631730 525630052 0.000000e+00 1943.0
4 TraesCS2D01G417500 chr3B 86.639 1699 176 27 516 2206 528611409 528613064 0.000000e+00 1832.0
5 TraesCS2D01G417500 chr4A 92.544 2213 144 8 1 2206 627998439 628000637 0.000000e+00 3153.0
6 TraesCS2D01G417500 chr4A 89.815 324 22 7 2601 2921 736822544 736822229 3.510000e-109 405.0
7 TraesCS2D01G417500 chr4A 88.720 328 26 7 2596 2921 736425694 736426012 9.810000e-105 390.0
8 TraesCS2D01G417500 chr5A 92.020 2218 163 12 1 2206 40620897 40623112 0.000000e+00 3103.0
9 TraesCS2D01G417500 chr5A 94.462 1282 70 1 929 2209 23920845 23919564 0.000000e+00 1973.0
10 TraesCS2D01G417500 chr1B 89.864 2062 169 19 114 2173 10357505 10355482 0.000000e+00 2614.0
11 TraesCS2D01G417500 chr1B 90.373 322 30 1 2600 2921 661931914 661931594 3.480000e-114 422.0
12 TraesCS2D01G417500 chr1A 93.097 1666 101 6 1 1664 35281900 35283553 0.000000e+00 2427.0
13 TraesCS2D01G417500 chr7A 91.978 1658 98 7 550 2206 48841187 48842810 0.000000e+00 2292.0
14 TraesCS2D01G417500 chr7A 86.111 144 19 1 2445 2587 706715461 706715604 1.400000e-33 154.0
15 TraesCS2D01G417500 chr2B 88.482 1693 169 13 519 2198 123197557 123195878 0.000000e+00 2023.0
16 TraesCS2D01G417500 chr2B 88.482 1693 169 13 519 2198 123287776 123286097 0.000000e+00 2023.0
17 TraesCS2D01G417500 chr2B 94.782 1169 57 4 1040 2206 94862962 94864128 0.000000e+00 1818.0
18 TraesCS2D01G417500 chr2B 90.303 330 28 1 2592 2921 631607729 631608054 2.080000e-116 429.0
19 TraesCS2D01G417500 chr2B 93.689 206 13 0 1 206 94813044 94813249 2.830000e-80 309.0
20 TraesCS2D01G417500 chr2B 87.500 248 18 8 2205 2442 631607497 631607741 1.030000e-69 274.0
21 TraesCS2D01G417500 chr2B 90.541 74 7 0 143 216 142737319 142737392 6.660000e-17 99.0
22 TraesCS2D01G417500 chr6A 86.903 1718 160 34 521 2209 569975226 569973545 0.000000e+00 1866.0
23 TraesCS2D01G417500 chr6B 85.908 1696 187 28 519 2207 5728719 5727069 0.000000e+00 1760.0
24 TraesCS2D01G417500 chr6B 91.818 330 26 1 2592 2921 688752630 688752958 2.650000e-125 459.0
25 TraesCS2D01G417500 chr6B 89.634 328 31 3 2595 2921 27900369 27900044 5.820000e-112 414.0
26 TraesCS2D01G417500 chr6B 84.028 144 22 1 2445 2587 568880842 568880985 1.410000e-28 137.0
27 TraesCS2D01G417500 chr2A 89.819 717 56 6 2213 2921 676374429 676375136 0.000000e+00 904.0
28 TraesCS2D01G417500 chr1D 89.474 323 30 2 2599 2921 475867847 475867529 3.510000e-109 405.0
29 TraesCS2D01G417500 chr1D 84.270 89 13 1 328 415 253216690 253216602 5.190000e-13 86.1
30 TraesCS2D01G417500 chr7D 89.124 331 27 7 2592 2919 5779990 5780314 1.260000e-108 403.0
31 TraesCS2D01G417500 chr3A 84.337 249 31 7 1964 2210 466778287 466778045 1.350000e-58 237.0
32 TraesCS2D01G417500 chrUn 84.028 144 22 1 2445 2587 322258151 322258294 1.410000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G417500 chr2D 531766219 531769139 2920 False 5395.0 5395 100.0000 1 2921 1 chr2D.!!$F1 2920
1 TraesCS2D01G417500 chr2D 448222116 448223705 1589 True 1851.0 1851 87.8840 610 2206 1 chr2D.!!$R1 1596
2 TraesCS2D01G417500 chr3B 27469981 27472175 2194 False 3210.0 3210 93.0220 1 2206 1 chr3B.!!$F1 2205
3 TraesCS2D01G417500 chr3B 525630052 525631730 1678 True 1943.0 1943 87.7550 521 2206 1 chr3B.!!$R1 1685
4 TraesCS2D01G417500 chr3B 528611409 528613064 1655 False 1832.0 1832 86.6390 516 2206 1 chr3B.!!$F2 1690
5 TraesCS2D01G417500 chr4A 627998439 628000637 2198 False 3153.0 3153 92.5440 1 2206 1 chr4A.!!$F1 2205
6 TraesCS2D01G417500 chr5A 40620897 40623112 2215 False 3103.0 3103 92.0200 1 2206 1 chr5A.!!$F1 2205
7 TraesCS2D01G417500 chr5A 23919564 23920845 1281 True 1973.0 1973 94.4620 929 2209 1 chr5A.!!$R1 1280
8 TraesCS2D01G417500 chr1B 10355482 10357505 2023 True 2614.0 2614 89.8640 114 2173 1 chr1B.!!$R1 2059
9 TraesCS2D01G417500 chr1A 35281900 35283553 1653 False 2427.0 2427 93.0970 1 1664 1 chr1A.!!$F1 1663
10 TraesCS2D01G417500 chr7A 48841187 48842810 1623 False 2292.0 2292 91.9780 550 2206 1 chr7A.!!$F1 1656
11 TraesCS2D01G417500 chr2B 123195878 123197557 1679 True 2023.0 2023 88.4820 519 2198 1 chr2B.!!$R1 1679
12 TraesCS2D01G417500 chr2B 123286097 123287776 1679 True 2023.0 2023 88.4820 519 2198 1 chr2B.!!$R2 1679
13 TraesCS2D01G417500 chr2B 94862962 94864128 1166 False 1818.0 1818 94.7820 1040 2206 1 chr2B.!!$F2 1166
14 TraesCS2D01G417500 chr2B 631607497 631608054 557 False 351.5 429 88.9015 2205 2921 2 chr2B.!!$F4 716
15 TraesCS2D01G417500 chr6A 569973545 569975226 1681 True 1866.0 1866 86.9030 521 2209 1 chr6A.!!$R1 1688
16 TraesCS2D01G417500 chr6B 5727069 5728719 1650 True 1760.0 1760 85.9080 519 2207 1 chr6B.!!$R1 1688
17 TraesCS2D01G417500 chr2A 676374429 676375136 707 False 904.0 904 89.8190 2213 2921 1 chr2A.!!$F1 708


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 687 0.620556 GAGCCATCAAGGGAAGGTCA 59.379 55.0 0.0 0.0 34.35 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 2608 0.181114 TCCATACATCAGGCACCAGC 59.819 55.0 0.0 0.0 41.1 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.148825 GGCAGCATCTCCGACGGT 62.149 66.667 14.79 0.00 0.00 4.83
87 88 3.112075 CATCGCCGCGTTGTCTGT 61.112 61.111 13.39 0.00 0.00 3.41
189 190 4.687215 TGACGCTGCTCCTGCCAC 62.687 66.667 0.00 0.00 38.71 5.01
217 218 2.029844 GTCAACCTCGACTGCTGCC 61.030 63.158 0.00 0.00 32.92 4.85
369 371 1.067516 GGAAACAAAAGCTCTGCTGCA 59.932 47.619 0.88 0.88 39.62 4.41
408 411 4.512914 GCCCCTGCCCAGATGGAC 62.513 72.222 0.00 0.00 37.39 4.02
683 687 0.620556 GAGCCATCAAGGGAAGGTCA 59.379 55.000 0.00 0.00 34.35 4.02
787 791 2.098607 CGTGAGCCATTCAGATGCATTT 59.901 45.455 0.00 0.00 36.21 2.32
791 795 3.293337 AGCCATTCAGATGCATTTGCTA 58.707 40.909 12.26 3.65 42.66 3.49
794 798 4.261867 GCCATTCAGATGCATTTGCTATCA 60.262 41.667 12.26 0.00 42.66 2.15
857 882 2.160853 TTGCTTGCGATCGCTCTCG 61.161 57.895 37.01 23.27 42.51 4.04
931 977 3.461773 CGTCCGTCCAGCCATCCT 61.462 66.667 0.00 0.00 0.00 3.24
937 983 1.903877 CGTCCAGCCATCCTTCCAGT 61.904 60.000 0.00 0.00 0.00 4.00
1000 1052 2.353030 CGTCGCTGTGTGTGTCGA 60.353 61.111 0.00 0.00 39.36 4.20
1571 1625 0.176910 GCACCTAACTCTGAGGCTCC 59.823 60.000 12.86 0.00 37.63 4.70
1575 1629 2.023501 ACCTAACTCTGAGGCTCCATCT 60.024 50.000 12.86 0.00 37.63 2.90
1628 1682 1.204941 GCTAGTGGTACCTGTGACTGG 59.795 57.143 14.36 10.97 0.00 4.00
1683 1737 2.416107 CTTCAGAGCCCAACCAGCCA 62.416 60.000 0.00 0.00 0.00 4.75
1756 1811 0.035739 GACCGTTGGGCAGGTTTCTA 59.964 55.000 0.00 0.00 41.51 2.10
1759 1814 1.613255 CCGTTGGGCAGGTTTCTATGT 60.613 52.381 0.00 0.00 0.00 2.29
1883 1938 3.333804 CTCTCAGGAGCAAAGGAAAGAC 58.666 50.000 0.00 0.00 32.43 3.01
1936 1991 3.245229 TGCTTGATGGATGGTTACCAGTT 60.245 43.478 10.74 0.00 40.89 3.16
2042 2098 2.159156 TCTTCGTGTTGTAGCAGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
2070 2127 1.619827 TGGACGTTAGGTGTTGGGTAG 59.380 52.381 0.00 0.00 0.00 3.18
2199 2298 3.317150 CAAATCTTTTGCCTCCGTTTCC 58.683 45.455 0.00 0.00 0.00 3.13
2275 2374 8.996271 AGTACTTTCTCCGTTCGAATTTATTTT 58.004 29.630 0.00 0.00 0.00 1.82
2395 2502 8.255905 TGTACTAAGTAACTAGCAAAAGATCCC 58.744 37.037 0.00 0.00 0.00 3.85
2398 2505 8.041919 ACTAAGTAACTAGCAAAAGATCCCTTC 58.958 37.037 0.00 0.00 0.00 3.46
2409 2516 0.740737 GATCCCTTCCGTTGCAATGG 59.259 55.000 28.76 28.76 36.38 3.16
2442 2550 4.570772 CCACACGTCCCTAACAGAATAATG 59.429 45.833 0.00 0.00 0.00 1.90
2488 2596 0.671796 CCCGATGCATGCATGACATT 59.328 50.000 36.73 13.96 36.64 2.71
2489 2597 1.601914 CCCGATGCATGCATGACATTG 60.602 52.381 36.73 28.58 36.64 2.82
2497 2605 4.185394 GCATGCATGACATTGAAATCCAA 58.815 39.130 30.64 0.00 36.64 3.53
2500 2608 3.181397 GCATGACATTGAAATCCAACGG 58.819 45.455 0.00 0.00 37.63 4.44
2523 2631 1.227234 TGCCTGATGTATGGACGCG 60.227 57.895 3.53 3.53 0.00 6.01
2528 2636 0.815095 TGATGTATGGACGCGTGTCT 59.185 50.000 26.79 12.18 44.83 3.41
2529 2637 2.018515 TGATGTATGGACGCGTGTCTA 58.981 47.619 26.79 22.55 44.83 2.59
2531 2639 1.741528 TGTATGGACGCGTGTCTAGA 58.258 50.000 26.79 17.10 44.83 2.43
2532 2640 1.399440 TGTATGGACGCGTGTCTAGAC 59.601 52.381 26.93 26.93 44.99 2.59
2534 2642 1.989966 ATGGACGCGTGTCTAGACGG 61.990 60.000 26.79 13.03 44.83 4.79
2546 2654 5.291128 CGTGTCTAGACGGATTTTAAGCATT 59.709 40.000 17.85 0.00 35.65 3.56
2569 2677 8.830580 CATTGTCTATGAGTCGTCCATATTTTT 58.169 33.333 0.00 0.00 36.26 1.94
2597 2705 3.320826 TGTACGTATAGCATGGCTCACAT 59.679 43.478 0.00 0.00 40.44 3.21
2611 2719 7.309012 GCATGGCTCACATAATAATCATGACTT 60.309 37.037 0.00 0.00 37.84 3.01
2614 2722 9.276590 TGGCTCACATAATAATCATGACTTAAG 57.723 33.333 0.00 0.00 0.00 1.85
2706 2814 2.133553 CTCAGTGCTCACAGTCACAAG 58.866 52.381 2.63 0.00 35.76 3.16
2720 2828 1.872952 TCACAAGTCGCTTGAATGTGG 59.127 47.619 21.19 7.63 43.42 4.17
2738 2846 3.181434 TGTGGCCAATTCTAAGGTGTCTT 60.181 43.478 7.24 0.00 37.03 3.01
2765 2873 5.598416 TCTCTCCGCATAAGATGAGAAAA 57.402 39.130 0.00 0.00 33.74 2.29
2770 2878 6.096987 TCTCCGCATAAGATGAGAAAACTACT 59.903 38.462 0.00 0.00 31.26 2.57
2771 2879 6.640518 TCCGCATAAGATGAGAAAACTACTT 58.359 36.000 0.00 0.00 31.20 2.24
2772 2880 7.103641 TCCGCATAAGATGAGAAAACTACTTT 58.896 34.615 0.00 0.00 31.20 2.66
2773 2881 7.606456 TCCGCATAAGATGAGAAAACTACTTTT 59.394 33.333 0.00 0.00 31.91 2.27
2852 2963 5.710099 TCTTCTCCAAACTAATTTTGCCGAT 59.290 36.000 0.00 0.00 43.03 4.18
2906 3017 6.710597 ATGAAAGAAAGATGGATCATGTGG 57.289 37.500 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.809601 GACAGACAACGCGGCGAT 60.810 61.111 30.94 15.67 0.00 4.58
85 86 2.404186 ATGCGCGACGTCTAGGACA 61.404 57.895 12.10 5.11 32.09 4.02
87 88 2.407616 CATGCGCGACGTCTAGGA 59.592 61.111 12.10 8.85 0.00 2.94
325 327 2.829592 GTCTGAATAGGGGCCGGG 59.170 66.667 2.18 0.00 0.00 5.73
326 328 2.421739 CGTCTGAATAGGGGCCGG 59.578 66.667 0.00 0.00 0.00 6.13
356 358 2.282745 GGGGTGCAGCAGAGCTTT 60.283 61.111 19.06 0.00 36.40 3.51
459 463 0.390866 CCTCATCTGTCACAAGCGCT 60.391 55.000 2.64 2.64 0.00 5.92
617 621 4.033776 CCCGACCCACATGCACCT 62.034 66.667 0.00 0.00 0.00 4.00
683 687 2.837371 GAAGGCAAGGCTACGCTCGT 62.837 60.000 8.53 0.00 0.00 4.18
696 700 3.294493 GCCCAACGCTTGAAGGCA 61.294 61.111 0.00 0.00 43.32 4.75
715 719 1.335051 GCAACGAAAGCACCTTCCTTC 60.335 52.381 0.00 0.00 0.00 3.46
716 720 0.668535 GCAACGAAAGCACCTTCCTT 59.331 50.000 0.00 0.00 0.00 3.36
787 791 1.048160 TGACCAGGGCGATGATAGCA 61.048 55.000 0.00 0.00 36.08 3.49
791 795 1.368950 CGATGACCAGGGCGATGAT 59.631 57.895 0.00 0.00 0.00 2.45
794 798 3.550431 CCCGATGACCAGGGCGAT 61.550 66.667 0.00 0.00 41.34 4.58
880 926 0.750249 TGACGAGGAGCACAAGTGAA 59.250 50.000 4.04 0.00 0.00 3.18
916 962 2.367202 GGAAGGATGGCTGGACGGA 61.367 63.158 0.00 0.00 0.00 4.69
917 963 2.190578 GGAAGGATGGCTGGACGG 59.809 66.667 0.00 0.00 0.00 4.79
918 964 1.153289 CTGGAAGGATGGCTGGACG 60.153 63.158 0.00 0.00 0.00 4.79
919 965 0.107459 GACTGGAAGGATGGCTGGAC 60.107 60.000 0.00 0.00 39.30 4.02
920 966 0.252881 AGACTGGAAGGATGGCTGGA 60.253 55.000 0.00 0.00 39.30 3.86
921 967 0.622665 AAGACTGGAAGGATGGCTGG 59.377 55.000 0.00 0.00 39.30 4.85
922 968 1.004044 ACAAGACTGGAAGGATGGCTG 59.996 52.381 0.00 0.00 39.30 4.85
923 969 1.280421 GACAAGACTGGAAGGATGGCT 59.720 52.381 0.00 0.00 39.30 4.75
924 970 1.680249 GGACAAGACTGGAAGGATGGC 60.680 57.143 0.00 0.00 39.30 4.40
925 971 1.912043 AGGACAAGACTGGAAGGATGG 59.088 52.381 0.00 0.00 39.30 3.51
926 972 3.604582 GAAGGACAAGACTGGAAGGATG 58.395 50.000 0.00 0.00 39.30 3.51
927 973 2.234908 CGAAGGACAAGACTGGAAGGAT 59.765 50.000 0.00 0.00 39.30 3.24
931 977 1.048601 AGCGAAGGACAAGACTGGAA 58.951 50.000 0.00 0.00 0.00 3.53
937 983 2.347490 GGCCAGCGAAGGACAAGA 59.653 61.111 0.00 0.00 36.38 3.02
1000 1052 0.749454 GATTGAGACCTTGGCGGCAT 60.749 55.000 14.32 0.00 35.61 4.40
1511 1565 3.423154 CGCCACTCAAAGACGCCC 61.423 66.667 0.00 0.00 0.00 6.13
1571 1625 2.740981 GTCTCCAGTTGCTCACAAGATG 59.259 50.000 0.00 0.00 36.16 2.90
1575 1629 0.880278 GCGTCTCCAGTTGCTCACAA 60.880 55.000 0.00 0.00 0.00 3.33
1610 1664 2.158430 TCACCAGTCACAGGTACCACTA 60.158 50.000 15.94 0.00 37.23 2.74
1628 1682 0.889186 ACCAACCGCCTCAACATCAC 60.889 55.000 0.00 0.00 0.00 3.06
1683 1737 1.986757 ATGCTCCACAGAGGCGAGT 60.987 57.895 0.00 0.00 40.79 4.18
1756 1811 6.713903 AGAATCTCATTGAACTTGTCACACAT 59.286 34.615 0.00 0.00 35.39 3.21
1759 1814 6.791887 GAGAATCTCATTGAACTTGTCACA 57.208 37.500 5.22 0.00 35.39 3.58
1807 1862 2.092861 TCACCCTCTCCAAACGTTTGAA 60.093 45.455 36.20 20.78 40.55 2.69
1840 1895 0.389817 TCCTCCACAATCGTCTTGCG 60.390 55.000 1.28 0.00 43.01 4.85
1846 1901 0.616111 AGAGCCTCCTCCACAATCGT 60.616 55.000 0.00 0.00 38.96 3.73
1883 1938 1.284982 CTTTCCTGTGGCGTCACTCG 61.285 60.000 22.43 12.09 43.94 4.18
1936 1991 3.655777 AGACCATAAGGACAACCCAAGAA 59.344 43.478 0.00 0.00 38.69 2.52
2042 2098 1.055551 ACCTAACGTCCACCAACCCA 61.056 55.000 0.00 0.00 0.00 4.51
2070 2127 3.093057 ACTACTCACAGAGTGACCATCC 58.907 50.000 9.78 0.00 43.30 3.51
2152 2251 7.118971 GCCTCATCGATTAATTAAGCAGAAGAT 59.881 37.037 13.48 5.28 0.00 2.40
2275 2374 5.015817 AGTTGATCCCAAATACAAGGGGTAA 59.984 40.000 0.00 0.00 45.51 2.85
2290 2389 5.705609 TTTGCTAGTCAAAAGTTGATCCC 57.294 39.130 9.09 0.00 41.36 3.85
2370 2469 8.476447 AGGGATCTTTTGCTAGTTACTTAGTAC 58.524 37.037 0.00 0.00 0.00 2.73
2390 2497 0.740737 CCATTGCAACGGAAGGGATC 59.259 55.000 5.38 0.00 0.00 3.36
2392 2499 1.304052 CCCATTGCAACGGAAGGGA 60.304 57.895 14.36 0.00 38.60 4.20
2395 2502 2.810439 TTTTCCCATTGCAACGGAAG 57.190 45.000 22.47 5.83 37.01 3.46
2482 2590 2.228582 CAGCCGTTGGATTTCAATGTCA 59.771 45.455 0.00 0.00 39.98 3.58
2500 2608 0.181114 TCCATACATCAGGCACCAGC 59.819 55.000 0.00 0.00 41.10 4.85
2504 2612 1.490693 CGCGTCCATACATCAGGCAC 61.491 60.000 0.00 0.00 0.00 5.01
2523 2631 6.092259 ACAATGCTTAAAATCCGTCTAGACAC 59.908 38.462 22.37 0.00 0.00 3.67
2528 2636 8.201464 TCATAGACAATGCTTAAAATCCGTCTA 58.799 33.333 0.00 0.00 38.63 2.59
2529 2637 7.047891 TCATAGACAATGCTTAAAATCCGTCT 58.952 34.615 0.00 0.00 35.38 4.18
2531 2639 6.823689 ACTCATAGACAATGCTTAAAATCCGT 59.176 34.615 0.00 0.00 35.38 4.69
2532 2640 7.251704 ACTCATAGACAATGCTTAAAATCCG 57.748 36.000 0.00 0.00 35.38 4.18
2534 2642 7.910304 ACGACTCATAGACAATGCTTAAAATC 58.090 34.615 0.00 0.00 35.38 2.17
2569 2677 6.224833 AGCCATGCTATACGTACACACGAA 62.225 45.833 0.00 0.00 43.89 3.85
2576 2684 3.364889 TGTGAGCCATGCTATACGTAC 57.635 47.619 0.00 0.00 39.88 3.67
2577 2685 5.715434 TTATGTGAGCCATGCTATACGTA 57.285 39.130 0.00 0.00 39.88 3.57
2578 2686 4.600692 TTATGTGAGCCATGCTATACGT 57.399 40.909 0.00 0.00 39.88 3.57
2579 2687 7.492344 TGATTATTATGTGAGCCATGCTATACG 59.508 37.037 0.00 0.00 39.88 3.06
2588 2696 9.276590 CTTAAGTCATGATTATTATGTGAGCCA 57.723 33.333 0.00 0.00 0.00 4.75
2589 2697 9.494271 TCTTAAGTCATGATTATTATGTGAGCC 57.506 33.333 0.00 0.00 0.00 4.70
2630 2738 3.208594 GGCAACATAGATGAGATGCACA 58.791 45.455 15.87 0.00 37.24 4.57
2706 2814 0.527565 ATTGGCCACATTCAAGCGAC 59.472 50.000 3.88 0.00 0.00 5.19
2720 2828 5.966742 AAGAAAGACACCTTAGAATTGGC 57.033 39.130 0.00 0.00 31.15 4.52
2738 2846 5.360999 TCTCATCTTATGCGGAGAGAAAGAA 59.639 40.000 0.00 0.00 32.89 2.52
2852 2963 7.602644 GTGTAGATCAGGTTAGAAATCAACACA 59.397 37.037 0.00 0.00 0.00 3.72



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.