Multiple sequence alignment - TraesCS2D01G417400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G417400 chr2D 100.000 3090 0 0 1 3090 531710678 531713767 0.000000e+00 5707
1 TraesCS2D01G417400 chr2D 82.595 316 21 19 1008 1317 531895280 531895567 6.620000e-62 248
2 TraesCS2D01G417400 chr2A 90.721 2705 173 35 213 2884 676370478 676373137 0.000000e+00 3533
3 TraesCS2D01G417400 chr2A 83.178 321 32 13 1008 1317 676378726 676379035 1.090000e-69 274
4 TraesCS2D01G417400 chr2A 91.429 140 12 0 2951 3090 676373476 676373615 3.140000e-45 193
5 TraesCS2D01G417400 chr2B 89.840 1752 96 34 275 2014 631600979 631602660 0.000000e+00 2174
6 TraesCS2D01G417400 chr2B 88.333 780 53 19 2039 2815 631604179 631604923 0.000000e+00 902
7 TraesCS2D01G417400 chr2B 90.000 170 17 0 2921 3090 631604920 631605089 1.440000e-53 220
8 TraesCS2D01G417400 chr2B 88.000 175 15 2 1146 1317 631700583 631700754 5.220000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G417400 chr2D 531710678 531713767 3089 False 5707.000000 5707 100.000 1 3090 1 chr2D.!!$F1 3089
1 TraesCS2D01G417400 chr2A 676370478 676373615 3137 False 1863.000000 3533 91.075 213 3090 2 chr2A.!!$F2 2877
2 TraesCS2D01G417400 chr2B 631600979 631605089 4110 False 1098.666667 2174 89.391 275 3090 3 chr2B.!!$F2 2815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.030235 CGCCATGCAGTGATTCCATG 59.970 55.0 0.0 0.0 36.87 3.66 F
73 74 0.035820 GGACCGGCCAATGAACTACA 60.036 55.0 0.0 0.0 36.34 2.74 F
2007 2054 0.107410 TCGTCAGCAACCACACCTTT 60.107 50.0 0.0 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 1979 0.105194 TGGACTTGAGACCCCAGTGA 60.105 55.0 0.0 0.0 0.0 3.41 R
2066 3607 0.179040 GTCCGTGTTGTTCCCTTCCA 60.179 55.0 0.0 0.0 0.0 3.53 R
2873 4420 0.106318 GACGAGGGGCTACTTAGGGA 60.106 60.0 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.908189 CGCCATGCAGTGATTCCA 58.092 55.556 0.00 0.00 0.00 3.53
18 19 2.411535 CGCCATGCAGTGATTCCAT 58.588 52.632 0.00 0.00 0.00 3.41
19 20 0.030235 CGCCATGCAGTGATTCCATG 59.970 55.000 0.00 0.00 36.87 3.66
20 21 1.108776 GCCATGCAGTGATTCCATGT 58.891 50.000 0.00 0.00 35.70 3.21
21 22 1.479323 GCCATGCAGTGATTCCATGTT 59.521 47.619 0.00 0.00 35.70 2.71
22 23 2.737359 GCCATGCAGTGATTCCATGTTG 60.737 50.000 0.00 0.00 35.70 3.33
23 24 2.494471 CCATGCAGTGATTCCATGTTGT 59.506 45.455 0.00 0.00 35.70 3.32
24 25 3.507786 CATGCAGTGATTCCATGTTGTG 58.492 45.455 0.00 0.00 33.46 3.33
25 26 1.270274 TGCAGTGATTCCATGTTGTGC 59.730 47.619 0.00 0.00 0.00 4.57
26 27 1.730121 GCAGTGATTCCATGTTGTGCG 60.730 52.381 0.00 0.00 0.00 5.34
27 28 0.523072 AGTGATTCCATGTTGTGCGC 59.477 50.000 0.00 0.00 0.00 6.09
28 29 0.240678 GTGATTCCATGTTGTGCGCA 59.759 50.000 5.66 5.66 0.00 6.09
29 30 1.135315 GTGATTCCATGTTGTGCGCAT 60.135 47.619 15.91 0.00 0.00 4.73
30 31 1.135344 TGATTCCATGTTGTGCGCATG 60.135 47.619 15.91 7.26 42.29 4.06
33 34 2.182284 CATGTTGTGCGCATGGGG 59.818 61.111 15.91 0.00 39.82 4.96
34 35 2.283101 ATGTTGTGCGCATGGGGT 60.283 55.556 15.91 0.00 0.00 4.95
35 36 1.001517 ATGTTGTGCGCATGGGGTA 60.002 52.632 15.91 0.00 0.00 3.69
36 37 1.312371 ATGTTGTGCGCATGGGGTAC 61.312 55.000 15.91 6.47 0.00 3.34
37 38 1.969064 GTTGTGCGCATGGGGTACA 60.969 57.895 15.91 0.85 38.97 2.90
38 39 1.673993 TTGTGCGCATGGGGTACAG 60.674 57.895 15.91 0.00 41.17 2.74
39 40 2.118233 TTGTGCGCATGGGGTACAGA 62.118 55.000 15.91 0.00 41.17 3.41
40 41 1.376683 GTGCGCATGGGGTACAGAA 60.377 57.895 15.91 0.00 32.16 3.02
41 42 1.078497 TGCGCATGGGGTACAGAAG 60.078 57.895 5.66 0.00 0.00 2.85
42 43 1.220749 GCGCATGGGGTACAGAAGA 59.779 57.895 12.19 0.00 0.00 2.87
43 44 0.811616 GCGCATGGGGTACAGAAGAG 60.812 60.000 12.19 0.00 0.00 2.85
44 45 0.179073 CGCATGGGGTACAGAAGAGG 60.179 60.000 0.89 0.00 0.00 3.69
45 46 1.204146 GCATGGGGTACAGAAGAGGA 58.796 55.000 0.00 0.00 0.00 3.71
46 47 1.139853 GCATGGGGTACAGAAGAGGAG 59.860 57.143 0.00 0.00 0.00 3.69
47 48 2.752030 CATGGGGTACAGAAGAGGAGA 58.248 52.381 0.00 0.00 0.00 3.71
48 49 3.312890 CATGGGGTACAGAAGAGGAGAT 58.687 50.000 0.00 0.00 0.00 2.75
49 50 3.491766 TGGGGTACAGAAGAGGAGATT 57.508 47.619 0.00 0.00 0.00 2.40
50 51 3.375699 TGGGGTACAGAAGAGGAGATTC 58.624 50.000 0.00 0.00 0.00 2.52
51 52 3.245984 TGGGGTACAGAAGAGGAGATTCA 60.246 47.826 0.00 0.00 0.00 2.57
52 53 3.775316 GGGGTACAGAAGAGGAGATTCAA 59.225 47.826 0.00 0.00 0.00 2.69
53 54 4.141824 GGGGTACAGAAGAGGAGATTCAAG 60.142 50.000 0.00 0.00 0.00 3.02
54 55 4.141824 GGGTACAGAAGAGGAGATTCAAGG 60.142 50.000 0.00 0.00 0.00 3.61
55 56 4.141824 GGTACAGAAGAGGAGATTCAAGGG 60.142 50.000 0.00 0.00 0.00 3.95
56 57 3.796111 ACAGAAGAGGAGATTCAAGGGA 58.204 45.455 0.00 0.00 0.00 4.20
57 58 3.517500 ACAGAAGAGGAGATTCAAGGGAC 59.482 47.826 0.00 0.00 0.00 4.46
58 59 3.111484 AGAAGAGGAGATTCAAGGGACC 58.889 50.000 0.00 0.00 0.00 4.46
59 60 1.490574 AGAGGAGATTCAAGGGACCG 58.509 55.000 0.00 0.00 0.00 4.79
60 61 0.466124 GAGGAGATTCAAGGGACCGG 59.534 60.000 0.00 0.00 0.00 5.28
61 62 1.153147 GGAGATTCAAGGGACCGGC 60.153 63.158 0.00 0.00 0.00 6.13
62 63 1.153147 GAGATTCAAGGGACCGGCC 60.153 63.158 0.00 3.33 0.00 6.13
63 64 1.910580 GAGATTCAAGGGACCGGCCA 61.911 60.000 15.49 0.00 38.95 5.36
64 65 1.001393 GATTCAAGGGACCGGCCAA 60.001 57.895 15.49 3.23 38.95 4.52
65 66 0.395724 GATTCAAGGGACCGGCCAAT 60.396 55.000 15.49 7.38 38.95 3.16
66 67 0.684153 ATTCAAGGGACCGGCCAATG 60.684 55.000 15.49 12.85 38.95 2.82
67 68 1.784301 TTCAAGGGACCGGCCAATGA 61.784 55.000 15.49 14.55 38.95 2.57
68 69 1.304052 CAAGGGACCGGCCAATGAA 60.304 57.895 15.49 0.00 38.95 2.57
69 70 1.304134 AAGGGACCGGCCAATGAAC 60.304 57.895 15.49 0.00 38.95 3.18
70 71 1.789576 AAGGGACCGGCCAATGAACT 61.790 55.000 15.49 1.31 38.95 3.01
71 72 0.912487 AGGGACCGGCCAATGAACTA 60.912 55.000 15.49 0.00 38.95 2.24
72 73 0.746923 GGGACCGGCCAATGAACTAC 60.747 60.000 15.49 0.00 38.95 2.73
73 74 0.035820 GGACCGGCCAATGAACTACA 60.036 55.000 0.00 0.00 36.34 2.74
74 75 1.408266 GGACCGGCCAATGAACTACAT 60.408 52.381 0.00 0.00 41.45 2.29
75 76 1.670811 GACCGGCCAATGAACTACATG 59.329 52.381 0.00 0.00 39.39 3.21
76 77 0.381801 CCGGCCAATGAACTACATGC 59.618 55.000 2.24 0.00 39.39 4.06
77 78 1.093972 CGGCCAATGAACTACATGCA 58.906 50.000 2.24 0.00 39.39 3.96
78 79 1.064505 CGGCCAATGAACTACATGCAG 59.935 52.381 2.24 0.00 39.39 4.41
79 80 1.202336 GGCCAATGAACTACATGCAGC 60.202 52.381 0.00 0.00 39.39 5.25
80 81 1.473677 GCCAATGAACTACATGCAGCA 59.526 47.619 0.00 0.00 39.39 4.41
81 82 2.094597 GCCAATGAACTACATGCAGCAA 60.095 45.455 0.00 0.00 39.39 3.91
82 83 3.429822 GCCAATGAACTACATGCAGCAAT 60.430 43.478 0.00 0.00 39.39 3.56
83 84 4.751060 CCAATGAACTACATGCAGCAATT 58.249 39.130 0.00 0.00 39.39 2.32
84 85 5.679382 GCCAATGAACTACATGCAGCAATTA 60.679 40.000 0.00 0.00 39.39 1.40
85 86 6.331845 CCAATGAACTACATGCAGCAATTAA 58.668 36.000 0.00 0.00 39.39 1.40
86 87 6.254157 CCAATGAACTACATGCAGCAATTAAC 59.746 38.462 0.00 0.00 39.39 2.01
87 88 5.956068 TGAACTACATGCAGCAATTAACA 57.044 34.783 0.00 0.00 0.00 2.41
88 89 5.698832 TGAACTACATGCAGCAATTAACAC 58.301 37.500 0.00 0.00 0.00 3.32
89 90 5.240403 TGAACTACATGCAGCAATTAACACA 59.760 36.000 0.00 0.00 0.00 3.72
90 91 5.703978 ACTACATGCAGCAATTAACACAA 57.296 34.783 0.00 0.00 0.00 3.33
91 92 5.460646 ACTACATGCAGCAATTAACACAAC 58.539 37.500 0.00 0.00 0.00 3.32
92 93 4.319139 ACATGCAGCAATTAACACAACA 57.681 36.364 0.00 0.00 0.00 3.33
93 94 4.300803 ACATGCAGCAATTAACACAACAG 58.699 39.130 0.00 0.00 0.00 3.16
94 95 3.367992 TGCAGCAATTAACACAACAGG 57.632 42.857 0.00 0.00 0.00 4.00
95 96 2.061028 GCAGCAATTAACACAACAGGC 58.939 47.619 0.00 0.00 0.00 4.85
96 97 2.288395 GCAGCAATTAACACAACAGGCT 60.288 45.455 0.00 0.00 0.00 4.58
97 98 3.799917 GCAGCAATTAACACAACAGGCTT 60.800 43.478 0.00 0.00 0.00 4.35
98 99 3.983344 CAGCAATTAACACAACAGGCTTC 59.017 43.478 0.00 0.00 0.00 3.86
99 100 3.891366 AGCAATTAACACAACAGGCTTCT 59.109 39.130 0.00 0.00 0.00 2.85
100 101 4.342092 AGCAATTAACACAACAGGCTTCTT 59.658 37.500 0.00 0.00 0.00 2.52
101 102 5.049828 GCAATTAACACAACAGGCTTCTTT 58.950 37.500 0.00 0.00 0.00 2.52
102 103 5.175673 GCAATTAACACAACAGGCTTCTTTC 59.824 40.000 0.00 0.00 0.00 2.62
103 104 4.911514 TTAACACAACAGGCTTCTTTCC 57.088 40.909 0.00 0.00 0.00 3.13
104 105 2.435372 ACACAACAGGCTTCTTTCCA 57.565 45.000 0.00 0.00 0.00 3.53
105 106 2.949447 ACACAACAGGCTTCTTTCCAT 58.051 42.857 0.00 0.00 0.00 3.41
106 107 2.624838 ACACAACAGGCTTCTTTCCATG 59.375 45.455 0.00 0.00 0.00 3.66
107 108 1.615392 ACAACAGGCTTCTTTCCATGC 59.385 47.619 0.00 0.00 0.00 4.06
108 109 1.614903 CAACAGGCTTCTTTCCATGCA 59.385 47.619 0.00 0.00 0.00 3.96
109 110 2.226962 ACAGGCTTCTTTCCATGCAT 57.773 45.000 0.00 0.00 0.00 3.96
110 111 1.822990 ACAGGCTTCTTTCCATGCATG 59.177 47.619 20.19 20.19 41.98 4.06
121 122 3.901087 CATGCATGGACAGGGGTAA 57.099 52.632 19.40 0.00 0.00 2.85
122 123 2.142356 CATGCATGGACAGGGGTAAA 57.858 50.000 19.40 0.00 0.00 2.01
123 124 2.455557 CATGCATGGACAGGGGTAAAA 58.544 47.619 19.40 0.00 0.00 1.52
124 125 2.685106 TGCATGGACAGGGGTAAAAA 57.315 45.000 0.00 0.00 0.00 1.94
125 126 2.524306 TGCATGGACAGGGGTAAAAAG 58.476 47.619 0.00 0.00 0.00 2.27
126 127 1.824852 GCATGGACAGGGGTAAAAAGG 59.175 52.381 0.00 0.00 0.00 3.11
127 128 2.821625 GCATGGACAGGGGTAAAAAGGT 60.822 50.000 0.00 0.00 0.00 3.50
128 129 3.562609 GCATGGACAGGGGTAAAAAGGTA 60.563 47.826 0.00 0.00 0.00 3.08
129 130 4.668636 CATGGACAGGGGTAAAAAGGTAA 58.331 43.478 0.00 0.00 0.00 2.85
130 131 4.810584 TGGACAGGGGTAAAAAGGTAAA 57.189 40.909 0.00 0.00 0.00 2.01
131 132 5.140106 TGGACAGGGGTAAAAAGGTAAAA 57.860 39.130 0.00 0.00 0.00 1.52
132 133 5.526434 TGGACAGGGGTAAAAAGGTAAAAA 58.474 37.500 0.00 0.00 0.00 1.94
151 152 2.820845 AAAAACACCCAGTCAGGCC 58.179 52.632 0.00 0.00 35.39 5.19
152 153 0.759060 AAAAACACCCAGTCAGGCCC 60.759 55.000 0.00 0.00 35.39 5.80
153 154 1.655114 AAAACACCCAGTCAGGCCCT 61.655 55.000 0.00 0.00 35.39 5.19
154 155 1.655114 AAACACCCAGTCAGGCCCTT 61.655 55.000 0.00 0.00 35.39 3.95
155 156 2.069165 AACACCCAGTCAGGCCCTTC 62.069 60.000 0.00 0.00 35.39 3.46
156 157 2.208349 ACCCAGTCAGGCCCTTCT 59.792 61.111 0.00 0.00 35.39 2.85
157 158 1.464198 ACCCAGTCAGGCCCTTCTT 60.464 57.895 0.00 0.00 35.39 2.52
158 159 1.001641 CCCAGTCAGGCCCTTCTTG 60.002 63.158 0.00 0.00 35.39 3.02
159 160 1.001641 CCAGTCAGGCCCTTCTTGG 60.002 63.158 0.00 0.00 0.00 3.61
160 161 1.763770 CAGTCAGGCCCTTCTTGGT 59.236 57.895 0.00 0.00 0.00 3.67
161 162 0.984230 CAGTCAGGCCCTTCTTGGTA 59.016 55.000 0.00 0.00 0.00 3.25
162 163 1.561542 CAGTCAGGCCCTTCTTGGTAT 59.438 52.381 0.00 0.00 0.00 2.73
163 164 1.840635 AGTCAGGCCCTTCTTGGTATC 59.159 52.381 0.00 0.00 0.00 2.24
164 165 1.840635 GTCAGGCCCTTCTTGGTATCT 59.159 52.381 0.00 0.00 0.00 1.98
165 166 1.839994 TCAGGCCCTTCTTGGTATCTG 59.160 52.381 0.00 0.00 0.00 2.90
166 167 1.561542 CAGGCCCTTCTTGGTATCTGT 59.438 52.381 0.00 0.00 0.00 3.41
167 168 1.561542 AGGCCCTTCTTGGTATCTGTG 59.438 52.381 0.00 0.00 0.00 3.66
168 169 1.559682 GGCCCTTCTTGGTATCTGTGA 59.440 52.381 0.00 0.00 0.00 3.58
169 170 2.173569 GGCCCTTCTTGGTATCTGTGAT 59.826 50.000 0.00 0.00 0.00 3.06
170 171 3.209410 GCCCTTCTTGGTATCTGTGATG 58.791 50.000 0.00 0.00 0.00 3.07
171 172 3.209410 CCCTTCTTGGTATCTGTGATGC 58.791 50.000 0.00 0.00 0.00 3.91
172 173 3.118112 CCCTTCTTGGTATCTGTGATGCT 60.118 47.826 0.00 0.00 0.00 3.79
173 174 4.125703 CCTTCTTGGTATCTGTGATGCTC 58.874 47.826 0.00 0.00 0.00 4.26
174 175 3.827008 TCTTGGTATCTGTGATGCTCC 57.173 47.619 0.00 0.00 0.00 4.70
175 176 3.378512 TCTTGGTATCTGTGATGCTCCT 58.621 45.455 0.00 0.00 0.00 3.69
176 177 3.776969 TCTTGGTATCTGTGATGCTCCTT 59.223 43.478 0.00 0.00 0.00 3.36
177 178 4.962362 TCTTGGTATCTGTGATGCTCCTTA 59.038 41.667 0.00 0.00 0.00 2.69
178 179 5.604231 TCTTGGTATCTGTGATGCTCCTTAT 59.396 40.000 0.00 0.00 0.00 1.73
179 180 5.219343 TGGTATCTGTGATGCTCCTTATG 57.781 43.478 0.00 0.00 0.00 1.90
180 181 3.999663 GGTATCTGTGATGCTCCTTATGC 59.000 47.826 0.00 0.00 0.00 3.14
181 182 2.229675 TCTGTGATGCTCCTTATGCG 57.770 50.000 0.00 0.00 0.00 4.73
182 183 0.585357 CTGTGATGCTCCTTATGCGC 59.415 55.000 0.00 0.00 0.00 6.09
183 184 0.107752 TGTGATGCTCCTTATGCGCA 60.108 50.000 14.96 14.96 38.14 6.09
184 185 0.585357 GTGATGCTCCTTATGCGCAG 59.415 55.000 18.32 1.21 37.06 5.18
185 186 0.465287 TGATGCTCCTTATGCGCAGA 59.535 50.000 18.32 9.06 37.06 4.26
186 187 0.864455 GATGCTCCTTATGCGCAGAC 59.136 55.000 18.32 0.00 37.06 3.51
187 188 0.467384 ATGCTCCTTATGCGCAGACT 59.533 50.000 18.32 0.56 37.06 3.24
188 189 1.111277 TGCTCCTTATGCGCAGACTA 58.889 50.000 18.32 0.00 0.00 2.59
189 190 1.480545 TGCTCCTTATGCGCAGACTAA 59.519 47.619 18.32 9.09 0.00 2.24
190 191 2.093711 TGCTCCTTATGCGCAGACTAAA 60.094 45.455 18.32 4.04 0.00 1.85
191 192 3.134458 GCTCCTTATGCGCAGACTAAAT 58.866 45.455 18.32 0.00 0.00 1.40
192 193 4.202212 TGCTCCTTATGCGCAGACTAAATA 60.202 41.667 18.32 0.00 0.00 1.40
193 194 4.387256 GCTCCTTATGCGCAGACTAAATAG 59.613 45.833 18.32 10.47 0.00 1.73
194 195 4.883083 TCCTTATGCGCAGACTAAATAGG 58.117 43.478 18.32 14.11 0.00 2.57
195 196 4.587262 TCCTTATGCGCAGACTAAATAGGA 59.413 41.667 18.32 16.39 0.00 2.94
196 197 5.246203 TCCTTATGCGCAGACTAAATAGGAT 59.754 40.000 18.32 0.00 0.00 3.24
197 198 5.349817 CCTTATGCGCAGACTAAATAGGATG 59.650 44.000 18.32 0.00 0.00 3.51
198 199 2.483876 TGCGCAGACTAAATAGGATGC 58.516 47.619 5.66 8.34 36.29 3.91
202 203 3.321497 GCAGACTAAATAGGATGCGAGG 58.679 50.000 0.00 0.00 32.10 4.63
203 204 3.862642 GCAGACTAAATAGGATGCGAGGG 60.863 52.174 0.00 0.00 32.10 4.30
204 205 3.574396 CAGACTAAATAGGATGCGAGGGA 59.426 47.826 0.00 0.00 0.00 4.20
205 206 3.829601 AGACTAAATAGGATGCGAGGGAG 59.170 47.826 0.00 0.00 0.00 4.30
206 207 3.574826 GACTAAATAGGATGCGAGGGAGT 59.425 47.826 0.00 0.00 0.00 3.85
207 208 4.737578 ACTAAATAGGATGCGAGGGAGTA 58.262 43.478 0.00 0.00 0.00 2.59
208 209 5.334421 ACTAAATAGGATGCGAGGGAGTAT 58.666 41.667 0.00 0.00 0.00 2.12
209 210 4.810191 AAATAGGATGCGAGGGAGTATC 57.190 45.455 0.00 0.00 33.37 2.24
210 211 3.748645 ATAGGATGCGAGGGAGTATCT 57.251 47.619 0.00 0.00 34.36 1.98
211 212 1.917872 AGGATGCGAGGGAGTATCTC 58.082 55.000 0.00 0.00 34.36 2.75
225 226 7.196637 GGGAGTATCTCTTTCTTTTCCCTTA 57.803 40.000 0.00 0.00 39.90 2.69
226 227 7.631007 GGGAGTATCTCTTTCTTTTCCCTTAA 58.369 38.462 0.00 0.00 39.90 1.85
235 236 7.302184 TCTTTCTTTTCCCTTAAAATGGAGGA 58.698 34.615 0.00 0.00 36.49 3.71
238 239 8.823220 TTCTTTTCCCTTAAAATGGAGGATAG 57.177 34.615 0.00 0.00 36.49 2.08
243 244 8.814448 TTCCCTTAAAATGGAGGATAGTATCT 57.186 34.615 9.97 0.00 34.91 1.98
245 246 8.660435 TCCCTTAAAATGGAGGATAGTATCTTG 58.340 37.037 9.97 0.00 34.91 3.02
247 248 8.660435 CCTTAAAATGGAGGATAGTATCTTGGA 58.340 37.037 9.97 0.00 34.91 3.53
253 254 7.162973 TGGAGGATAGTATCTTGGAACTCTA 57.837 40.000 9.97 2.67 0.00 2.43
356 360 4.966168 TGTGCTGAAATATCCTGTAGGGTA 59.034 41.667 0.00 0.00 34.83 3.69
361 365 6.360370 TGAAATATCCTGTAGGGTAGATGC 57.640 41.667 0.00 0.00 33.62 3.91
376 380 1.940883 GATGCGTAGGTCCACGGTGA 61.941 60.000 10.28 0.00 42.18 4.02
391 395 1.605753 GGTGAGCCGAACCTTTTTCT 58.394 50.000 0.00 0.00 34.66 2.52
392 396 1.535896 GGTGAGCCGAACCTTTTTCTC 59.464 52.381 0.00 0.00 34.66 2.87
471 476 2.286418 CGCAACAAGAAGAAAAGACGCT 60.286 45.455 0.00 0.00 0.00 5.07
474 479 2.222027 ACAAGAAGAAAAGACGCTGGG 58.778 47.619 0.00 0.00 0.00 4.45
481 486 1.804748 GAAAAGACGCTGGGAAACGAT 59.195 47.619 0.00 0.00 0.00 3.73
502 507 0.251341 ATCAAAGGTGGTGAGTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
546 551 6.434018 AAAAGACTAGTGCCTACTACTACG 57.566 41.667 0.00 0.00 38.36 3.51
712 717 2.611800 AGGCCCAGCAGACATCCA 60.612 61.111 0.00 0.00 0.00 3.41
716 721 0.244721 GCCCAGCAGACATCCAAAAC 59.755 55.000 0.00 0.00 0.00 2.43
729 734 1.535204 CCAAAACGGGAAGCAGCCAT 61.535 55.000 0.00 0.00 0.00 4.40
923 929 3.128068 ACGAGTGTGTTCCCTTTGAAAAC 59.872 43.478 0.00 0.00 40.99 2.43
954 980 4.802999 ACGCGCCTAAGTAATCCTAATAC 58.197 43.478 5.73 0.00 0.00 1.89
955 981 4.522022 ACGCGCCTAAGTAATCCTAATACT 59.478 41.667 5.73 0.00 35.15 2.12
956 982 5.707298 ACGCGCCTAAGTAATCCTAATACTA 59.293 40.000 5.73 0.00 33.36 1.82
980 1006 7.769272 AATAGGACTATACTACGAGCGTATC 57.231 40.000 2.97 0.00 0.00 2.24
995 1021 1.266175 CGTATCGTATGCTCCCTCGTT 59.734 52.381 0.00 0.00 0.00 3.85
996 1022 2.662700 GTATCGTATGCTCCCTCGTTG 58.337 52.381 0.00 0.00 0.00 4.10
1001 1027 1.686325 TATGCTCCCTCGTTGGCTCC 61.686 60.000 0.00 0.00 0.00 4.70
1033 1060 1.680338 ATAAAGGGCAATGCTCCGAC 58.320 50.000 0.00 0.00 0.00 4.79
1080 1109 1.659954 GAGCGCCTCGTAGCATCAG 60.660 63.158 2.29 0.00 35.48 2.90
1086 1115 1.202417 GCCTCGTAGCATCAGCAAGTA 60.202 52.381 0.00 0.00 45.49 2.24
1088 1117 3.722147 CCTCGTAGCATCAGCAAGTATT 58.278 45.455 0.00 0.00 45.49 1.89
1112 1141 0.538287 GCCAGGTTCCTGCTTCAGTT 60.538 55.000 12.88 0.00 33.07 3.16
1118 1147 2.291741 GGTTCCTGCTTCAGTTGTTCTG 59.708 50.000 0.00 0.00 44.85 3.02
1119 1148 1.597742 TCCTGCTTCAGTTGTTCTGC 58.402 50.000 0.00 0.00 43.32 4.26
1132 1161 2.826428 TGTTCTGCTGTCTCTGTGAAC 58.174 47.619 0.00 0.00 35.68 3.18
1162 1191 1.663379 CGTCGACCATGAGCTACCCA 61.663 60.000 10.58 0.00 0.00 4.51
1392 1421 1.470285 CGCCATCTTCCCATTGCTTTG 60.470 52.381 0.00 0.00 0.00 2.77
1418 1450 5.560966 TTTGATTTCTTCTAATCCGTGGC 57.439 39.130 0.00 0.00 34.34 5.01
1500 1532 2.839486 TCACAAGTTCCTACTGCCAG 57.161 50.000 0.00 0.00 34.01 4.85
1551 1583 3.119173 ACTCAGAGCTGCTCATAGTTGAC 60.119 47.826 29.49 1.72 32.06 3.18
1713 1757 3.183754 TGGTGATGAATAACACGTAGCG 58.816 45.455 0.00 0.00 37.82 4.26
1932 1979 0.542232 AAGGAGTAGTGCGTGGGAGT 60.542 55.000 0.00 0.00 0.00 3.85
1993 2040 4.278310 TCATGTCCTATTCTTCCTCGTCA 58.722 43.478 0.00 0.00 0.00 4.35
1994 2041 4.339530 TCATGTCCTATTCTTCCTCGTCAG 59.660 45.833 0.00 0.00 0.00 3.51
2000 2047 0.756294 TTCTTCCTCGTCAGCAACCA 59.244 50.000 0.00 0.00 0.00 3.67
2007 2054 0.107410 TCGTCAGCAACCACACCTTT 60.107 50.000 0.00 0.00 0.00 3.11
2016 2063 1.589803 ACCACACCTTTACTTCACGC 58.410 50.000 0.00 0.00 0.00 5.34
2026 2073 0.800631 TACTTCACGCGTCTCATCGT 59.199 50.000 9.86 3.50 39.79 3.73
2034 2081 2.652496 GTCTCATCGTCGCCGCTC 60.652 66.667 0.00 0.00 0.00 5.03
2035 2082 3.131478 TCTCATCGTCGCCGCTCA 61.131 61.111 0.00 0.00 0.00 4.26
2037 2084 2.013483 CTCATCGTCGCCGCTCATC 61.013 63.158 0.00 0.00 0.00 2.92
2066 3607 3.774959 GATGCACCCGACGATCGCT 62.775 63.158 16.60 2.00 38.82 4.93
2087 3628 1.838568 GAAGGGAACAACACGGACGC 61.839 60.000 0.00 0.00 0.00 5.19
2171 3713 8.891671 ATCAAAATGTAACAAAATGTGCTTCT 57.108 26.923 0.00 0.00 0.00 2.85
2172 3714 9.979578 ATCAAAATGTAACAAAATGTGCTTCTA 57.020 25.926 0.00 0.00 0.00 2.10
2201 3743 5.118990 TGAAAATCATCCGGTTTGCAAAAA 58.881 33.333 14.67 0.23 0.00 1.94
2245 3787 7.591006 AAAATCTGCTTTGAATTGTATGCAG 57.409 32.000 13.78 13.78 46.21 4.41
2256 3802 3.535280 TTGTATGCAGCTACGATTGGA 57.465 42.857 0.00 0.00 0.00 3.53
2261 3807 1.510480 GCAGCTACGATTGGATGGCC 61.510 60.000 0.00 0.00 0.00 5.36
2264 3810 1.445942 CTACGATTGGATGGCCGGT 59.554 57.895 1.90 0.00 36.79 5.28
2267 3813 1.748879 CGATTGGATGGCCGGTTGT 60.749 57.895 1.90 0.00 36.79 3.32
2284 3830 1.080772 GTCGCATCAGTGTCCGTGA 60.081 57.895 0.00 0.00 0.00 4.35
2293 3839 2.069273 CAGTGTCCGTGAACTGATTCC 58.931 52.381 3.26 0.00 45.43 3.01
2299 3845 0.037697 CGTGAACTGATTCCCACCGA 60.038 55.000 0.00 0.00 33.49 4.69
2306 3852 2.224606 CTGATTCCCACCGATTCATGG 58.775 52.381 0.00 0.00 32.01 3.66
2308 3854 2.442878 TGATTCCCACCGATTCATGGAT 59.557 45.455 5.67 0.00 38.34 3.41
2318 3864 2.612721 CGATTCATGGATGGATGCGGTA 60.613 50.000 0.00 0.00 0.00 4.02
2321 3867 2.259917 TCATGGATGGATGCGGTATCT 58.740 47.619 6.05 0.00 36.03 1.98
2341 3887 3.390967 TCTGATTTGAGGGTCAGTGTTGA 59.609 43.478 2.72 0.00 41.92 3.18
2401 3947 3.434309 CAAGTCACCCCATTTCAATCCT 58.566 45.455 0.00 0.00 0.00 3.24
2402 3948 4.569653 CCAAGTCACCCCATTTCAATCCTA 60.570 45.833 0.00 0.00 0.00 2.94
2546 4093 3.072468 TCCTCCTTGGCGTACCCG 61.072 66.667 0.00 0.00 35.87 5.28
2585 4132 5.305644 ACTCAACCACTCTCTTGTCTTGTAT 59.694 40.000 0.00 0.00 0.00 2.29
2607 4154 0.548682 AGAGAACATGGGTGGAGCCT 60.549 55.000 0.00 0.00 37.43 4.58
2688 4235 0.752658 CACCATGTCTAGGCGATCCA 59.247 55.000 0.00 0.00 33.74 3.41
2745 4292 0.179081 GTTCGAGGCCCTAAATCGCT 60.179 55.000 0.00 0.00 36.43 4.93
2748 4295 0.876342 CGAGGCCCTAAATCGCTGAC 60.876 60.000 0.00 0.00 0.00 3.51
2773 4320 0.250858 TAACGTCGTCCCTGACTCCA 60.251 55.000 0.00 0.00 36.71 3.86
2778 4325 0.039764 TCGTCCCTGACTCCAGTGAT 59.960 55.000 0.00 0.00 38.74 3.06
2831 4378 1.137282 GCTCTGGTACTCCTTGTAGGC 59.863 57.143 0.00 0.00 34.61 3.93
2839 4386 4.468868 GGTACTCCTTGTAGGCTTCCTAAA 59.531 45.833 0.00 0.00 37.91 1.85
2840 4387 5.046087 GGTACTCCTTGTAGGCTTCCTAAAA 60.046 44.000 0.00 0.00 37.91 1.52
2873 4420 3.288308 CTGAAGCCTCGTGCGTCCT 62.288 63.158 11.41 0.00 46.46 3.85
2884 4431 0.102663 GTGCGTCCTCCCTAAGTAGC 59.897 60.000 0.00 0.00 0.00 3.58
2885 4432 1.041447 TGCGTCCTCCCTAAGTAGCC 61.041 60.000 0.00 0.00 0.00 3.93
2886 4433 1.746322 GCGTCCTCCCTAAGTAGCCC 61.746 65.000 0.00 0.00 0.00 5.19
2887 4434 1.114119 CGTCCTCCCTAAGTAGCCCC 61.114 65.000 0.00 0.00 0.00 5.80
2888 4435 0.265254 GTCCTCCCTAAGTAGCCCCT 59.735 60.000 0.00 0.00 0.00 4.79
2889 4436 0.561680 TCCTCCCTAAGTAGCCCCTC 59.438 60.000 0.00 0.00 0.00 4.30
2890 4437 0.828343 CCTCCCTAAGTAGCCCCTCG 60.828 65.000 0.00 0.00 0.00 4.63
2891 4438 0.106116 CTCCCTAAGTAGCCCCTCGT 60.106 60.000 0.00 0.00 0.00 4.18
2892 4439 0.106318 TCCCTAAGTAGCCCCTCGTC 60.106 60.000 0.00 0.00 0.00 4.20
2893 4440 1.114119 CCCTAAGTAGCCCCTCGTCC 61.114 65.000 0.00 0.00 0.00 4.79
2894 4441 0.106116 CCTAAGTAGCCCCTCGTCCT 60.106 60.000 0.00 0.00 0.00 3.85
2895 4442 1.320507 CTAAGTAGCCCCTCGTCCTC 58.679 60.000 0.00 0.00 0.00 3.71
2896 4443 0.627451 TAAGTAGCCCCTCGTCCTCA 59.373 55.000 0.00 0.00 0.00 3.86
2897 4444 0.252103 AAGTAGCCCCTCGTCCTCAA 60.252 55.000 0.00 0.00 0.00 3.02
2898 4445 0.684805 AGTAGCCCCTCGTCCTCAAG 60.685 60.000 0.00 0.00 0.00 3.02
2899 4446 2.058595 TAGCCCCTCGTCCTCAAGC 61.059 63.158 0.00 0.00 0.00 4.01
2900 4447 2.516048 TAGCCCCTCGTCCTCAAGCT 62.516 60.000 0.00 0.00 0.00 3.74
2901 4448 2.960688 GCCCCTCGTCCTCAAGCTT 61.961 63.158 0.00 0.00 0.00 3.74
2902 4449 1.614241 GCCCCTCGTCCTCAAGCTTA 61.614 60.000 0.00 0.00 0.00 3.09
2903 4450 0.175989 CCCCTCGTCCTCAAGCTTAC 59.824 60.000 0.00 0.00 0.00 2.34
2904 4451 0.175989 CCCTCGTCCTCAAGCTTACC 59.824 60.000 0.00 0.00 0.00 2.85
2905 4452 0.175989 CCTCGTCCTCAAGCTTACCC 59.824 60.000 0.00 0.00 0.00 3.69
2906 4453 0.175989 CTCGTCCTCAAGCTTACCCC 59.824 60.000 0.00 0.00 0.00 4.95
2907 4454 1.153628 CGTCCTCAAGCTTACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
2908 4455 1.449778 GTCCTCAAGCTTACCCCGC 60.450 63.158 0.00 0.00 0.00 6.13
2909 4456 2.124695 CCTCAAGCTTACCCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
2910 4457 2.511600 CTCAAGCTTACCCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
2911 4458 4.770874 TCAAGCTTACCCCGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
2939 4486 4.673298 TCCGCCACGCACGACATT 62.673 61.111 0.00 0.00 0.00 2.71
2941 4488 4.444024 CGCCACGCACGACATTGG 62.444 66.667 0.00 0.00 0.00 3.16
2954 4773 0.673437 ACATTGGTTTGGTGCTTCCG 59.327 50.000 0.00 0.00 39.52 4.30
2957 4776 2.010582 TTGGTTTGGTGCTTCCGTGC 62.011 55.000 0.00 0.00 39.52 5.34
2977 4796 1.419922 GCGTCCAAGCACACATACG 59.580 57.895 0.00 0.00 37.05 3.06
3041 4860 0.395724 TCCTCGTGGCATCTAGCTCA 60.396 55.000 0.00 0.00 44.79 4.26
3055 4874 4.142038 TCTAGCTCAATGTCCGCATAGTA 58.858 43.478 0.00 0.00 34.39 1.82
3065 4884 2.980476 GTCCGCATAGTATCACATGTCG 59.020 50.000 0.00 0.00 0.00 4.35
3070 4889 3.305676 GCATAGTATCACATGTCGCCTCT 60.306 47.826 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.411535 ATGGAATCACTGCATGGCG 58.588 52.632 0.00 0.00 34.26 5.69
4 5 2.094390 GCACAACATGGAATCACTGCAT 60.094 45.455 0.00 0.00 36.32 3.96
5 6 1.270274 GCACAACATGGAATCACTGCA 59.730 47.619 0.00 0.00 0.00 4.41
6 7 1.730121 CGCACAACATGGAATCACTGC 60.730 52.381 0.00 0.00 0.00 4.40
7 8 1.730121 GCGCACAACATGGAATCACTG 60.730 52.381 0.30 0.00 0.00 3.66
8 9 0.523072 GCGCACAACATGGAATCACT 59.477 50.000 0.30 0.00 0.00 3.41
9 10 0.240678 TGCGCACAACATGGAATCAC 59.759 50.000 5.66 0.00 0.00 3.06
10 11 1.135344 CATGCGCACAACATGGAATCA 60.135 47.619 14.90 0.00 40.99 2.57
11 12 1.552226 CATGCGCACAACATGGAATC 58.448 50.000 14.90 0.00 40.99 2.52
12 13 3.725485 CATGCGCACAACATGGAAT 57.275 47.368 14.90 0.00 40.99 3.01
16 17 1.311651 TACCCCATGCGCACAACATG 61.312 55.000 14.90 6.60 43.67 3.21
17 18 1.001517 TACCCCATGCGCACAACAT 60.002 52.632 14.90 0.47 0.00 2.71
18 19 1.969064 GTACCCCATGCGCACAACA 60.969 57.895 14.90 0.00 0.00 3.33
19 20 1.922135 CTGTACCCCATGCGCACAAC 61.922 60.000 14.90 5.42 0.00 3.32
20 21 1.673993 CTGTACCCCATGCGCACAA 60.674 57.895 14.90 0.00 0.00 3.33
21 22 2.046411 CTGTACCCCATGCGCACA 60.046 61.111 14.90 2.72 0.00 4.57
22 23 1.369091 CTTCTGTACCCCATGCGCAC 61.369 60.000 14.90 0.00 0.00 5.34
23 24 1.078497 CTTCTGTACCCCATGCGCA 60.078 57.895 14.96 14.96 0.00 6.09
24 25 0.811616 CTCTTCTGTACCCCATGCGC 60.812 60.000 0.00 0.00 0.00 6.09
25 26 0.179073 CCTCTTCTGTACCCCATGCG 60.179 60.000 0.00 0.00 0.00 4.73
26 27 1.139853 CTCCTCTTCTGTACCCCATGC 59.860 57.143 0.00 0.00 0.00 4.06
27 28 2.752030 TCTCCTCTTCTGTACCCCATG 58.248 52.381 0.00 0.00 0.00 3.66
28 29 3.715648 ATCTCCTCTTCTGTACCCCAT 57.284 47.619 0.00 0.00 0.00 4.00
29 30 3.245984 TGAATCTCCTCTTCTGTACCCCA 60.246 47.826 0.00 0.00 0.00 4.96
30 31 3.375699 TGAATCTCCTCTTCTGTACCCC 58.624 50.000 0.00 0.00 0.00 4.95
31 32 4.141824 CCTTGAATCTCCTCTTCTGTACCC 60.142 50.000 0.00 0.00 0.00 3.69
32 33 4.141824 CCCTTGAATCTCCTCTTCTGTACC 60.142 50.000 0.00 0.00 0.00 3.34
33 34 4.712337 TCCCTTGAATCTCCTCTTCTGTAC 59.288 45.833 0.00 0.00 0.00 2.90
34 35 4.712337 GTCCCTTGAATCTCCTCTTCTGTA 59.288 45.833 0.00 0.00 0.00 2.74
35 36 3.517500 GTCCCTTGAATCTCCTCTTCTGT 59.482 47.826 0.00 0.00 0.00 3.41
36 37 3.118445 GGTCCCTTGAATCTCCTCTTCTG 60.118 52.174 0.00 0.00 0.00 3.02
37 38 3.111484 GGTCCCTTGAATCTCCTCTTCT 58.889 50.000 0.00 0.00 0.00 2.85
38 39 2.159028 CGGTCCCTTGAATCTCCTCTTC 60.159 54.545 0.00 0.00 0.00 2.87
39 40 1.834263 CGGTCCCTTGAATCTCCTCTT 59.166 52.381 0.00 0.00 0.00 2.85
40 41 1.490574 CGGTCCCTTGAATCTCCTCT 58.509 55.000 0.00 0.00 0.00 3.69
41 42 0.466124 CCGGTCCCTTGAATCTCCTC 59.534 60.000 0.00 0.00 0.00 3.71
42 43 1.627297 GCCGGTCCCTTGAATCTCCT 61.627 60.000 1.90 0.00 0.00 3.69
43 44 1.153147 GCCGGTCCCTTGAATCTCC 60.153 63.158 1.90 0.00 0.00 3.71
44 45 1.153147 GGCCGGTCCCTTGAATCTC 60.153 63.158 1.90 0.00 0.00 2.75
45 46 1.497309 TTGGCCGGTCCCTTGAATCT 61.497 55.000 2.12 0.00 0.00 2.40
46 47 0.395724 ATTGGCCGGTCCCTTGAATC 60.396 55.000 2.12 0.00 0.00 2.52
47 48 0.684153 CATTGGCCGGTCCCTTGAAT 60.684 55.000 2.12 0.00 0.00 2.57
48 49 1.304052 CATTGGCCGGTCCCTTGAA 60.304 57.895 2.12 0.00 0.00 2.69
49 50 1.784301 TTCATTGGCCGGTCCCTTGA 61.784 55.000 2.12 8.05 0.00 3.02
50 51 1.304052 TTCATTGGCCGGTCCCTTG 60.304 57.895 2.12 5.79 0.00 3.61
51 52 1.304134 GTTCATTGGCCGGTCCCTT 60.304 57.895 2.12 0.00 0.00 3.95
52 53 0.912487 TAGTTCATTGGCCGGTCCCT 60.912 55.000 2.12 0.00 0.00 4.20
53 54 0.746923 GTAGTTCATTGGCCGGTCCC 60.747 60.000 2.12 0.00 0.00 4.46
54 55 0.035820 TGTAGTTCATTGGCCGGTCC 60.036 55.000 2.12 5.67 0.00 4.46
55 56 1.670811 CATGTAGTTCATTGGCCGGTC 59.329 52.381 0.00 0.00 34.09 4.79
56 57 1.750193 CATGTAGTTCATTGGCCGGT 58.250 50.000 1.90 0.00 34.09 5.28
57 58 0.381801 GCATGTAGTTCATTGGCCGG 59.618 55.000 0.00 0.00 34.09 6.13
58 59 1.064505 CTGCATGTAGTTCATTGGCCG 59.935 52.381 2.12 0.00 34.09 6.13
59 60 1.202336 GCTGCATGTAGTTCATTGGCC 60.202 52.381 12.66 0.00 34.09 5.36
60 61 1.473677 TGCTGCATGTAGTTCATTGGC 59.526 47.619 12.66 0.00 34.09 4.52
61 62 3.853831 TTGCTGCATGTAGTTCATTGG 57.146 42.857 12.66 0.00 34.09 3.16
62 63 6.807720 TGTTAATTGCTGCATGTAGTTCATTG 59.192 34.615 12.66 0.00 34.09 2.82
63 64 6.808212 GTGTTAATTGCTGCATGTAGTTCATT 59.192 34.615 12.66 10.14 34.09 2.57
64 65 6.072008 TGTGTTAATTGCTGCATGTAGTTCAT 60.072 34.615 12.66 0.00 37.22 2.57
65 66 5.240403 TGTGTTAATTGCTGCATGTAGTTCA 59.760 36.000 12.66 0.00 0.00 3.18
66 67 5.698832 TGTGTTAATTGCTGCATGTAGTTC 58.301 37.500 12.66 0.00 0.00 3.01
67 68 5.703978 TGTGTTAATTGCTGCATGTAGTT 57.296 34.783 12.66 1.79 0.00 2.24
68 69 5.009510 TGTTGTGTTAATTGCTGCATGTAGT 59.990 36.000 12.66 0.00 0.00 2.73
69 70 5.459768 TGTTGTGTTAATTGCTGCATGTAG 58.540 37.500 1.84 6.42 0.00 2.74
70 71 5.444663 TGTTGTGTTAATTGCTGCATGTA 57.555 34.783 1.84 0.00 0.00 2.29
71 72 4.300803 CTGTTGTGTTAATTGCTGCATGT 58.699 39.130 1.84 0.00 0.00 3.21
72 73 3.676172 CCTGTTGTGTTAATTGCTGCATG 59.324 43.478 1.84 0.00 0.00 4.06
73 74 3.861886 GCCTGTTGTGTTAATTGCTGCAT 60.862 43.478 1.84 0.00 0.00 3.96
74 75 2.545532 GCCTGTTGTGTTAATTGCTGCA 60.546 45.455 0.00 0.00 0.00 4.41
75 76 2.061028 GCCTGTTGTGTTAATTGCTGC 58.939 47.619 0.00 0.00 0.00 5.25
76 77 3.648339 AGCCTGTTGTGTTAATTGCTG 57.352 42.857 0.00 0.00 0.00 4.41
77 78 3.891366 AGAAGCCTGTTGTGTTAATTGCT 59.109 39.130 0.00 0.00 0.00 3.91
78 79 4.243007 AGAAGCCTGTTGTGTTAATTGC 57.757 40.909 0.00 0.00 0.00 3.56
79 80 5.691754 GGAAAGAAGCCTGTTGTGTTAATTG 59.308 40.000 0.00 0.00 0.00 2.32
80 81 5.362430 TGGAAAGAAGCCTGTTGTGTTAATT 59.638 36.000 0.00 0.00 0.00 1.40
81 82 4.892934 TGGAAAGAAGCCTGTTGTGTTAAT 59.107 37.500 0.00 0.00 0.00 1.40
82 83 4.274147 TGGAAAGAAGCCTGTTGTGTTAA 58.726 39.130 0.00 0.00 0.00 2.01
83 84 3.892284 TGGAAAGAAGCCTGTTGTGTTA 58.108 40.909 0.00 0.00 0.00 2.41
84 85 2.733956 TGGAAAGAAGCCTGTTGTGTT 58.266 42.857 0.00 0.00 0.00 3.32
85 86 2.435372 TGGAAAGAAGCCTGTTGTGT 57.565 45.000 0.00 0.00 0.00 3.72
86 87 2.608752 GCATGGAAAGAAGCCTGTTGTG 60.609 50.000 0.00 0.00 0.00 3.33
87 88 1.615392 GCATGGAAAGAAGCCTGTTGT 59.385 47.619 0.00 0.00 0.00 3.32
88 89 1.614903 TGCATGGAAAGAAGCCTGTTG 59.385 47.619 0.00 0.00 0.00 3.33
89 90 1.999648 TGCATGGAAAGAAGCCTGTT 58.000 45.000 0.00 0.00 0.00 3.16
90 91 1.822990 CATGCATGGAAAGAAGCCTGT 59.177 47.619 19.40 0.00 0.00 4.00
91 92 2.579207 CATGCATGGAAAGAAGCCTG 57.421 50.000 19.40 0.00 0.00 4.85
103 104 2.142356 TTTACCCCTGTCCATGCATG 57.858 50.000 20.19 20.19 0.00 4.06
104 105 2.917713 TTTTACCCCTGTCCATGCAT 57.082 45.000 0.00 0.00 0.00 3.96
105 106 2.524306 CTTTTTACCCCTGTCCATGCA 58.476 47.619 0.00 0.00 0.00 3.96
106 107 1.824852 CCTTTTTACCCCTGTCCATGC 59.175 52.381 0.00 0.00 0.00 4.06
107 108 3.169512 ACCTTTTTACCCCTGTCCATG 57.830 47.619 0.00 0.00 0.00 3.66
108 109 5.342361 TTTACCTTTTTACCCCTGTCCAT 57.658 39.130 0.00 0.00 0.00 3.41
109 110 4.810584 TTTACCTTTTTACCCCTGTCCA 57.189 40.909 0.00 0.00 0.00 4.02
133 134 0.759060 GGGCCTGACTGGGTGTTTTT 60.759 55.000 0.84 0.00 36.00 1.94
134 135 1.152546 GGGCCTGACTGGGTGTTTT 60.153 57.895 0.84 0.00 36.00 2.43
135 136 1.655114 AAGGGCCTGACTGGGTGTTT 61.655 55.000 6.92 0.00 36.00 2.83
136 137 2.069165 GAAGGGCCTGACTGGGTGTT 62.069 60.000 6.92 0.00 36.00 3.32
137 138 2.450502 AAGGGCCTGACTGGGTGT 60.451 61.111 6.92 0.00 36.00 4.16
138 139 1.783250 AAGAAGGGCCTGACTGGGTG 61.783 60.000 6.92 0.00 36.00 4.61
139 140 1.464198 AAGAAGGGCCTGACTGGGT 60.464 57.895 6.92 0.00 36.00 4.51
140 141 1.001641 CAAGAAGGGCCTGACTGGG 60.002 63.158 6.92 2.85 36.00 4.45
141 142 1.001641 CCAAGAAGGGCCTGACTGG 60.002 63.158 6.92 10.39 39.35 4.00
142 143 0.984230 TACCAAGAAGGGCCTGACTG 59.016 55.000 6.92 4.24 43.89 3.51
143 144 1.840635 GATACCAAGAAGGGCCTGACT 59.159 52.381 6.92 7.32 43.89 3.41
144 145 1.840635 AGATACCAAGAAGGGCCTGAC 59.159 52.381 6.92 4.61 43.89 3.51
145 146 1.839994 CAGATACCAAGAAGGGCCTGA 59.160 52.381 6.92 0.00 43.89 3.86
146 147 1.561542 ACAGATACCAAGAAGGGCCTG 59.438 52.381 6.92 0.00 43.89 4.85
147 148 1.561542 CACAGATACCAAGAAGGGCCT 59.438 52.381 0.00 0.00 43.89 5.19
148 149 1.559682 TCACAGATACCAAGAAGGGCC 59.440 52.381 0.00 0.00 43.89 5.80
149 150 3.209410 CATCACAGATACCAAGAAGGGC 58.791 50.000 0.00 0.00 43.89 5.19
150 151 3.118112 AGCATCACAGATACCAAGAAGGG 60.118 47.826 0.00 0.00 43.89 3.95
151 152 4.125703 GAGCATCACAGATACCAAGAAGG 58.874 47.826 0.00 0.00 38.28 3.46
152 153 4.125703 GGAGCATCACAGATACCAAGAAG 58.874 47.826 0.00 0.00 36.25 2.85
153 154 3.776969 AGGAGCATCACAGATACCAAGAA 59.223 43.478 0.00 0.00 36.25 2.52
154 155 3.378512 AGGAGCATCACAGATACCAAGA 58.621 45.455 0.00 0.00 36.25 3.02
155 156 3.834489 AGGAGCATCACAGATACCAAG 57.166 47.619 0.00 0.00 36.25 3.61
156 157 5.614308 CATAAGGAGCATCACAGATACCAA 58.386 41.667 0.00 0.00 36.25 3.67
157 158 4.503817 GCATAAGGAGCATCACAGATACCA 60.504 45.833 0.00 0.00 36.25 3.25
158 159 3.999663 GCATAAGGAGCATCACAGATACC 59.000 47.826 0.00 0.00 36.25 2.73
159 160 3.677121 CGCATAAGGAGCATCACAGATAC 59.323 47.826 0.00 0.00 36.25 2.24
160 161 3.862264 GCGCATAAGGAGCATCACAGATA 60.862 47.826 0.30 0.00 42.48 1.98
161 162 2.763933 CGCATAAGGAGCATCACAGAT 58.236 47.619 0.00 0.00 36.25 2.90
162 163 1.807755 GCGCATAAGGAGCATCACAGA 60.808 52.381 0.30 0.00 42.48 3.41
163 164 0.585357 GCGCATAAGGAGCATCACAG 59.415 55.000 0.30 0.00 42.48 3.66
164 165 2.694065 GCGCATAAGGAGCATCACA 58.306 52.632 0.30 0.00 42.48 3.58
170 171 2.225068 TTAGTCTGCGCATAAGGAGC 57.775 50.000 12.24 0.00 43.33 4.70
171 172 4.926238 CCTATTTAGTCTGCGCATAAGGAG 59.074 45.833 12.24 7.86 0.00 3.69
172 173 4.587262 TCCTATTTAGTCTGCGCATAAGGA 59.413 41.667 12.24 9.13 0.00 3.36
173 174 4.883083 TCCTATTTAGTCTGCGCATAAGG 58.117 43.478 12.24 6.58 0.00 2.69
174 175 5.163913 GCATCCTATTTAGTCTGCGCATAAG 60.164 44.000 12.24 0.00 0.00 1.73
175 176 4.690748 GCATCCTATTTAGTCTGCGCATAA 59.309 41.667 12.24 3.77 0.00 1.90
176 177 4.245660 GCATCCTATTTAGTCTGCGCATA 58.754 43.478 12.24 0.00 0.00 3.14
177 178 3.070018 GCATCCTATTTAGTCTGCGCAT 58.930 45.455 12.24 0.00 0.00 4.73
178 179 2.483876 GCATCCTATTTAGTCTGCGCA 58.516 47.619 10.98 10.98 0.00 6.09
179 180 1.457303 CGCATCCTATTTAGTCTGCGC 59.543 52.381 0.00 0.00 41.71 6.09
180 181 2.983136 CTCGCATCCTATTTAGTCTGCG 59.017 50.000 17.79 17.79 45.52 5.18
181 182 3.321497 CCTCGCATCCTATTTAGTCTGC 58.679 50.000 0.00 0.00 0.00 4.26
182 183 3.574396 TCCCTCGCATCCTATTTAGTCTG 59.426 47.826 0.00 0.00 0.00 3.51
183 184 3.829601 CTCCCTCGCATCCTATTTAGTCT 59.170 47.826 0.00 0.00 0.00 3.24
184 185 3.574826 ACTCCCTCGCATCCTATTTAGTC 59.425 47.826 0.00 0.00 0.00 2.59
185 186 3.577919 ACTCCCTCGCATCCTATTTAGT 58.422 45.455 0.00 0.00 0.00 2.24
186 187 5.654650 AGATACTCCCTCGCATCCTATTTAG 59.345 44.000 0.00 0.00 0.00 1.85
187 188 5.580998 AGATACTCCCTCGCATCCTATTTA 58.419 41.667 0.00 0.00 0.00 1.40
188 189 4.421131 AGATACTCCCTCGCATCCTATTT 58.579 43.478 0.00 0.00 0.00 1.40
189 190 4.020543 GAGATACTCCCTCGCATCCTATT 58.979 47.826 0.00 0.00 0.00 1.73
190 191 3.268334 AGAGATACTCCCTCGCATCCTAT 59.732 47.826 0.00 0.00 35.88 2.57
191 192 2.645297 AGAGATACTCCCTCGCATCCTA 59.355 50.000 0.00 0.00 35.88 2.94
192 193 1.427368 AGAGATACTCCCTCGCATCCT 59.573 52.381 0.00 0.00 35.88 3.24
193 194 1.917872 AGAGATACTCCCTCGCATCC 58.082 55.000 0.00 0.00 35.88 3.51
194 195 3.572255 AGAAAGAGATACTCCCTCGCATC 59.428 47.826 0.00 0.00 35.88 3.91
195 196 3.571590 AGAAAGAGATACTCCCTCGCAT 58.428 45.455 0.00 0.00 35.88 4.73
196 197 3.019799 AGAAAGAGATACTCCCTCGCA 57.980 47.619 0.00 0.00 35.88 5.10
197 198 4.394439 AAAGAAAGAGATACTCCCTCGC 57.606 45.455 0.00 0.00 35.88 5.03
198 199 5.353111 GGAAAAGAAAGAGATACTCCCTCG 58.647 45.833 0.00 0.00 35.88 4.63
199 200 5.427157 AGGGAAAAGAAAGAGATACTCCCTC 59.573 44.000 0.32 0.00 39.62 4.30
200 201 5.354848 AGGGAAAAGAAAGAGATACTCCCT 58.645 41.667 0.32 0.32 39.03 4.20
201 202 5.702065 AGGGAAAAGAAAGAGATACTCCC 57.298 43.478 0.00 0.00 0.00 4.30
202 203 9.516546 TTTTAAGGGAAAAGAAAGAGATACTCC 57.483 33.333 0.00 0.00 31.90 3.85
207 208 8.956446 TCCATTTTAAGGGAAAAGAAAGAGAT 57.044 30.769 0.00 0.00 40.34 2.75
208 209 7.451566 CCTCCATTTTAAGGGAAAAGAAAGAGA 59.548 37.037 0.00 0.00 40.34 3.10
209 210 7.451566 TCCTCCATTTTAAGGGAAAAGAAAGAG 59.548 37.037 0.00 0.00 40.34 2.85
210 211 7.302184 TCCTCCATTTTAAGGGAAAAGAAAGA 58.698 34.615 0.00 0.00 40.34 2.52
211 212 7.539034 TCCTCCATTTTAAGGGAAAAGAAAG 57.461 36.000 0.00 0.00 40.34 2.62
225 226 8.107196 AGTTCCAAGATACTATCCTCCATTTT 57.893 34.615 0.00 0.00 0.00 1.82
226 227 7.570607 AGAGTTCCAAGATACTATCCTCCATTT 59.429 37.037 0.00 0.00 0.00 2.32
231 232 8.644374 ATGTAGAGTTCCAAGATACTATCCTC 57.356 38.462 0.00 0.00 0.00 3.71
238 239 8.948631 TCAATTGATGTAGAGTTCCAAGATAC 57.051 34.615 3.38 0.00 0.00 2.24
333 337 3.780294 ACCCTACAGGATATTTCAGCACA 59.220 43.478 0.00 0.00 39.89 4.57
347 351 2.553172 GACCTACGCATCTACCCTACAG 59.447 54.545 0.00 0.00 0.00 2.74
356 360 1.681327 ACCGTGGACCTACGCATCT 60.681 57.895 9.99 0.00 42.44 2.90
361 365 2.181021 GCTCACCGTGGACCTACG 59.819 66.667 8.85 8.85 43.35 3.51
376 380 3.142174 CAAGAGAGAAAAAGGTTCGGCT 58.858 45.455 0.00 0.00 0.00 5.52
391 395 2.806745 CGGCTCACCTTGTTTCAAGAGA 60.807 50.000 10.54 7.46 0.00 3.10
392 396 1.532868 CGGCTCACCTTGTTTCAAGAG 59.467 52.381 10.54 2.86 0.00 2.85
471 476 3.081061 CACCTTTGATGATCGTTTCCCA 58.919 45.455 0.00 0.00 0.00 4.37
474 479 3.751175 TCACCACCTTTGATGATCGTTTC 59.249 43.478 0.00 0.00 0.00 2.78
481 486 1.545428 GGCACTCACCACCTTTGATGA 60.545 52.381 0.00 0.00 0.00 2.92
502 507 3.194861 TCGGAACTGCTCCAATAATTCG 58.805 45.455 0.00 0.00 45.74 3.34
546 551 6.072175 TGTTTTTCTAATGTGGTGCTATGGTC 60.072 38.462 0.00 0.00 0.00 4.02
708 713 1.250840 GGCTGCTTCCCGTTTTGGAT 61.251 55.000 0.00 0.00 42.00 3.41
712 717 0.539438 TGATGGCTGCTTCCCGTTTT 60.539 50.000 0.00 0.00 0.00 2.43
716 721 0.883814 GATCTGATGGCTGCTTCCCG 60.884 60.000 0.00 0.00 0.00 5.14
729 734 2.484742 ACTGCTGCACATTGATCTGA 57.515 45.000 0.00 0.00 0.00 3.27
909 915 6.419710 CGTTATCCAAAGTTTTCAAAGGGAAC 59.580 38.462 0.00 0.00 34.56 3.62
923 929 2.277084 ACTTAGGCGCGTTATCCAAAG 58.723 47.619 8.36 7.21 0.00 2.77
954 980 8.870160 ATACGCTCGTAGTATAGTCCTATTAG 57.130 38.462 8.16 0.00 33.46 1.73
955 981 7.645735 CGATACGCTCGTAGTATAGTCCTATTA 59.354 40.741 8.16 0.00 42.56 0.98
956 982 6.475076 CGATACGCTCGTAGTATAGTCCTATT 59.525 42.308 8.16 0.00 42.56 1.73
980 1006 1.883084 GCCAACGAGGGAGCATACG 60.883 63.158 0.00 0.00 38.09 3.06
981 1007 0.530870 GAGCCAACGAGGGAGCATAC 60.531 60.000 0.00 0.00 38.09 2.39
982 1008 1.686325 GGAGCCAACGAGGGAGCATA 61.686 60.000 0.00 0.00 38.09 3.14
983 1009 2.586792 GAGCCAACGAGGGAGCAT 59.413 61.111 0.00 0.00 38.09 3.79
984 1010 3.706373 GGAGCCAACGAGGGAGCA 61.706 66.667 0.00 0.00 38.09 4.26
995 1021 2.430248 TATAGTGACACGAGGAGCCA 57.570 50.000 0.00 0.00 0.00 4.75
996 1022 5.449107 TTTATATAGTGACACGAGGAGCC 57.551 43.478 0.00 0.00 0.00 4.70
1001 1027 5.196341 TGCCCTTTATATAGTGACACGAG 57.804 43.478 0.00 0.00 0.00 4.18
1033 1060 4.984785 TCTCGACTTTGTGATGTTCTTCTG 59.015 41.667 0.00 0.00 0.00 3.02
1112 1141 2.432146 AGTTCACAGAGACAGCAGAACA 59.568 45.455 0.00 0.00 38.18 3.18
1118 1147 1.667467 GGTCGAGTTCACAGAGACAGC 60.667 57.143 0.00 0.00 33.84 4.40
1119 1148 1.400371 CGGTCGAGTTCACAGAGACAG 60.400 57.143 0.00 0.00 33.84 3.51
1392 1421 6.801862 CCACGGATTAGAAGAAATCAAAACAC 59.198 38.462 0.00 0.00 37.56 3.32
1418 1450 2.539274 CACAACTGCAAATGAAAACGGG 59.461 45.455 5.47 0.00 0.00 5.28
1500 1532 3.869272 CGTCGGATTGCCTGCTGC 61.869 66.667 0.00 0.00 41.77 5.25
1503 1535 0.882042 ATCATCGTCGGATTGCCTGC 60.882 55.000 0.00 0.00 0.00 4.85
1713 1757 3.001736 GTCAAGAATTCTCGCATGCTACC 59.998 47.826 17.13 0.00 0.00 3.18
1913 1960 0.542232 ACTCCCACGCACTACTCCTT 60.542 55.000 0.00 0.00 0.00 3.36
1914 1961 0.966370 GACTCCCACGCACTACTCCT 60.966 60.000 0.00 0.00 0.00 3.69
1915 1962 1.248785 TGACTCCCACGCACTACTCC 61.249 60.000 0.00 0.00 0.00 3.85
1932 1979 0.105194 TGGACTTGAGACCCCAGTGA 60.105 55.000 0.00 0.00 0.00 3.41
1993 2040 2.949644 GTGAAGTAAAGGTGTGGTTGCT 59.050 45.455 0.00 0.00 0.00 3.91
1994 2041 2.286772 CGTGAAGTAAAGGTGTGGTTGC 60.287 50.000 0.00 0.00 0.00 4.17
2000 2047 1.068127 AGACGCGTGAAGTAAAGGTGT 59.932 47.619 20.70 0.00 0.00 4.16
2007 2054 0.800631 ACGATGAGACGCGTGAAGTA 59.199 50.000 20.70 0.00 39.56 2.24
2034 2081 1.953138 GCATCTCACCGCCTCGATG 60.953 63.158 0.00 0.00 37.05 3.84
2035 2082 2.419198 GCATCTCACCGCCTCGAT 59.581 61.111 0.00 0.00 0.00 3.59
2037 2084 2.887568 GTGCATCTCACCGCCTCG 60.888 66.667 0.00 0.00 39.79 4.63
2058 3599 1.218316 GTTCCCTTCCAGCGATCGT 59.782 57.895 17.81 0.26 0.00 3.73
2066 3607 0.179040 GTCCGTGTTGTTCCCTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
2164 3706 9.979270 CGGATGATTTTCATATAATAGAAGCAC 57.021 33.333 0.00 0.00 37.20 4.40
2165 3707 9.166173 CCGGATGATTTTCATATAATAGAAGCA 57.834 33.333 0.00 0.00 37.20 3.91
2166 3708 9.167311 ACCGGATGATTTTCATATAATAGAAGC 57.833 33.333 9.46 0.00 37.20 3.86
2170 3712 9.559958 GCAAACCGGATGATTTTCATATAATAG 57.440 33.333 9.46 0.00 37.20 1.73
2171 3713 9.072375 TGCAAACCGGATGATTTTCATATAATA 57.928 29.630 9.46 0.00 37.20 0.98
2172 3714 7.950512 TGCAAACCGGATGATTTTCATATAAT 58.049 30.769 9.46 0.00 37.20 1.28
2207 3749 7.425577 AAGCAGATTTTAACAAGCCAAATTC 57.574 32.000 0.00 0.00 0.00 2.17
2208 3750 7.498570 TCAAAGCAGATTTTAACAAGCCAAATT 59.501 29.630 0.00 0.00 0.00 1.82
2209 3751 6.991531 TCAAAGCAGATTTTAACAAGCCAAAT 59.008 30.769 0.00 0.00 0.00 2.32
2210 3752 6.344500 TCAAAGCAGATTTTAACAAGCCAAA 58.656 32.000 0.00 0.00 0.00 3.28
2211 3753 5.911752 TCAAAGCAGATTTTAACAAGCCAA 58.088 33.333 0.00 0.00 0.00 4.52
2245 3787 1.961277 CCGGCCATCCAATCGTAGC 60.961 63.158 2.24 0.00 0.00 3.58
2256 3802 2.824041 GATGCGACAACCGGCCAT 60.824 61.111 0.00 0.00 39.04 4.40
2261 3807 1.626654 GGACACTGATGCGACAACCG 61.627 60.000 0.00 0.00 42.21 4.44
2264 3810 0.943835 CACGGACACTGATGCGACAA 60.944 55.000 4.87 0.00 0.00 3.18
2267 3813 0.666274 GTTCACGGACACTGATGCGA 60.666 55.000 4.87 0.00 0.00 5.10
2284 3830 3.282021 CATGAATCGGTGGGAATCAGTT 58.718 45.455 0.00 0.00 37.95 3.16
2289 3835 2.489619 CCATCCATGAATCGGTGGGAAT 60.490 50.000 0.00 0.00 36.15 3.01
2293 3839 2.156917 CATCCATCCATGAATCGGTGG 58.843 52.381 0.00 0.00 36.82 4.61
2299 3845 3.265221 AGATACCGCATCCATCCATGAAT 59.735 43.478 0.00 0.00 33.75 2.57
2306 3852 4.318332 TCAAATCAGATACCGCATCCATC 58.682 43.478 0.00 0.00 33.75 3.51
2308 3854 3.494924 CCTCAAATCAGATACCGCATCCA 60.495 47.826 0.00 0.00 33.75 3.41
2318 3864 4.042062 TCAACACTGACCCTCAAATCAGAT 59.958 41.667 8.18 0.00 44.32 2.90
2321 3867 3.855255 TCAACACTGACCCTCAAATCA 57.145 42.857 0.00 0.00 0.00 2.57
2341 3887 1.379576 GCAAGCATGAGGGCCTCTT 60.380 57.895 32.28 24.30 0.00 2.85
2401 3947 2.303600 ACAAATCACAACGCTAGGGGTA 59.696 45.455 11.95 0.00 0.00 3.69
2402 3948 1.073284 ACAAATCACAACGCTAGGGGT 59.927 47.619 11.95 0.49 0.00 4.95
2452 3999 1.389106 GTACGAACGGTCTCAATGTGC 59.611 52.381 0.00 0.00 0.00 4.57
2536 4083 3.766691 GAGAAGCCGGGTACGCCA 61.767 66.667 6.57 0.00 39.22 5.69
2585 4132 2.111384 GCTCCACCCATGTTCTCTCTA 58.889 52.381 0.00 0.00 0.00 2.43
2592 4139 2.036256 GCAGGCTCCACCCATGTT 59.964 61.111 0.00 0.00 40.58 2.71
2595 4142 2.233566 TGAAGCAGGCTCCACCCAT 61.234 57.895 0.00 0.00 40.58 4.00
2688 4235 3.975168 AGTTTACTATGACGGCAAGGT 57.025 42.857 0.00 0.00 0.00 3.50
2713 4260 4.501058 GGGCCTCGAACGTAGATTATTTCT 60.501 45.833 0.84 0.00 38.57 2.52
2729 4276 0.876342 GTCAGCGATTTAGGGCCTCG 60.876 60.000 10.74 9.30 35.57 4.63
2748 4295 1.153901 AGGGACGACGTTATGTGCG 60.154 57.895 0.13 0.00 0.00 5.34
2773 4320 2.236146 TCAAGGCACGGTGATTATCACT 59.764 45.455 22.48 3.45 46.19 3.41
2778 4325 2.627945 GTGATCAAGGCACGGTGATTA 58.372 47.619 13.29 0.00 37.92 1.75
2831 4378 4.860022 AGGACCACATGGATTTTAGGAAG 58.140 43.478 4.53 0.00 38.94 3.46
2839 4386 3.370953 GCTTCAGTAGGACCACATGGATT 60.371 47.826 4.53 0.00 38.94 3.01
2840 4387 2.171448 GCTTCAGTAGGACCACATGGAT 59.829 50.000 4.53 0.00 38.94 3.41
2873 4420 0.106318 GACGAGGGGCTACTTAGGGA 60.106 60.000 0.00 0.00 0.00 4.20
2884 4431 0.175989 GTAAGCTTGAGGACGAGGGG 59.824 60.000 9.86 0.00 0.00 4.79
2885 4432 0.175989 GGTAAGCTTGAGGACGAGGG 59.824 60.000 9.86 0.00 0.00 4.30
2886 4433 0.175989 GGGTAAGCTTGAGGACGAGG 59.824 60.000 9.86 0.00 0.00 4.63
2887 4434 0.175989 GGGGTAAGCTTGAGGACGAG 59.824 60.000 9.86 0.00 0.00 4.18
2888 4435 1.601419 CGGGGTAAGCTTGAGGACGA 61.601 60.000 9.86 0.00 0.00 4.20
2889 4436 1.153628 CGGGGTAAGCTTGAGGACG 60.154 63.158 9.86 3.66 0.00 4.79
2890 4437 1.449778 GCGGGGTAAGCTTGAGGAC 60.450 63.158 9.86 0.00 0.00 3.85
2891 4438 2.666098 GGCGGGGTAAGCTTGAGGA 61.666 63.158 9.86 0.00 34.52 3.71
2892 4439 2.124695 GGCGGGGTAAGCTTGAGG 60.125 66.667 9.86 0.00 34.52 3.86
2893 4440 2.511600 CGGCGGGGTAAGCTTGAG 60.512 66.667 9.86 0.00 34.52 3.02
2894 4441 4.770874 GCGGCGGGGTAAGCTTGA 62.771 66.667 9.86 0.00 34.52 3.02
2922 4469 4.673298 AATGTCGTGCGTGGCGGA 62.673 61.111 0.00 0.00 0.00 5.54
2923 4470 4.444024 CAATGTCGTGCGTGGCGG 62.444 66.667 0.00 0.00 0.00 6.13
2924 4471 4.444024 CCAATGTCGTGCGTGGCG 62.444 66.667 0.00 0.00 0.00 5.69
2925 4472 2.400896 AAACCAATGTCGTGCGTGGC 62.401 55.000 0.00 0.00 0.00 5.01
2926 4473 0.660005 CAAACCAATGTCGTGCGTGG 60.660 55.000 0.00 0.00 0.00 4.94
2927 4474 0.660005 CCAAACCAATGTCGTGCGTG 60.660 55.000 0.00 0.00 0.00 5.34
2928 4475 1.098712 ACCAAACCAATGTCGTGCGT 61.099 50.000 0.00 0.00 0.00 5.24
2929 4476 0.660005 CACCAAACCAATGTCGTGCG 60.660 55.000 0.00 0.00 0.00 5.34
2930 4477 0.939106 GCACCAAACCAATGTCGTGC 60.939 55.000 0.00 0.00 35.86 5.34
2931 4478 0.667993 AGCACCAAACCAATGTCGTG 59.332 50.000 0.00 0.00 0.00 4.35
2932 4479 1.336755 GAAGCACCAAACCAATGTCGT 59.663 47.619 0.00 0.00 0.00 4.34
2933 4480 1.335872 GGAAGCACCAAACCAATGTCG 60.336 52.381 0.00 0.00 38.79 4.35
2934 4481 1.335872 CGGAAGCACCAAACCAATGTC 60.336 52.381 1.20 0.00 38.90 3.06
2939 4486 2.485795 GCACGGAAGCACCAAACCA 61.486 57.895 1.20 0.00 38.90 3.67
2941 4488 2.335011 GGCACGGAAGCACCAAAC 59.665 61.111 1.20 0.00 38.90 2.93
2957 4776 1.739929 TATGTGTGCTTGGACGCGG 60.740 57.895 12.47 0.00 0.00 6.46
3041 4860 4.960938 ACATGTGATACTATGCGGACATT 58.039 39.130 0.00 0.00 37.74 2.71
3055 4874 4.528674 GCAGAGGCGACATGTGAT 57.471 55.556 1.15 0.00 0.00 3.06
3065 4884 0.540923 AGATGACTTCCAGCAGAGGC 59.459 55.000 0.00 0.00 41.61 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.