Multiple sequence alignment - TraesCS2D01G417300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G417300 chr2D 100.000 4201 0 0 1 4201 531680019 531675819 0.000000e+00 7758.0
1 TraesCS2D01G417300 chr2A 95.352 2668 104 8 1400 4048 676269276 676266610 0.000000e+00 4222.0
2 TraesCS2D01G417300 chr2A 88.952 706 43 18 741 1417 676270894 676270195 0.000000e+00 839.0
3 TraesCS2D01G417300 chr2A 92.333 300 19 3 239 535 677920858 677920560 1.400000e-114 424.0
4 TraesCS2D01G417300 chr2A 87.437 199 16 5 535 729 676271146 676270953 1.970000e-53 220.0
5 TraesCS2D01G417300 chr2A 91.558 154 11 1 36 187 663656429 663656582 1.180000e-50 211.0
6 TraesCS2D01G417300 chr2A 87.143 70 4 2 186 251 676271213 676271145 1.620000e-09 75.0
7 TraesCS2D01G417300 chr2A 97.561 41 1 0 4161 4201 676266612 676266572 2.100000e-08 71.3
8 TraesCS2D01G417300 chr2A 97.059 34 1 0 1 34 549767477 549767444 1.630000e-04 58.4
9 TraesCS2D01G417300 chr2B 96.057 2232 82 1 1823 4048 631442556 631440325 0.000000e+00 3629.0
10 TraesCS2D01G417300 chr2B 86.368 1137 78 33 741 1824 631443698 631442586 0.000000e+00 1170.0
11 TraesCS2D01G417300 chr2B 93.750 288 16 2 251 537 402035036 402034750 8.340000e-117 431.0
12 TraesCS2D01G417300 chr2B 93.711 159 8 1 577 735 631443911 631443755 1.950000e-58 237.0
13 TraesCS2D01G417300 chr2B 92.414 145 9 1 36 178 157579063 157579207 5.510000e-49 206.0
14 TraesCS2D01G417300 chr2B 100.000 41 0 0 4161 4201 631440327 631440287 4.500000e-10 76.8
15 TraesCS2D01G417300 chr7A 94.792 288 13 2 251 537 6084263 6084549 8.290000e-122 448.0
16 TraesCS2D01G417300 chr5D 94.483 290 14 2 247 535 549921561 549921273 2.980000e-121 446.0
17 TraesCS2D01G417300 chr5D 95.726 117 5 0 4046 4162 352456283 352456399 5.540000e-44 189.0
18 TraesCS2D01G417300 chr7D 94.056 286 14 3 251 535 530408076 530408359 8.340000e-117 431.0
19 TraesCS2D01G417300 chr7D 92.593 297 18 4 245 538 254194161 254193866 1.400000e-114 424.0
20 TraesCS2D01G417300 chr7D 91.667 156 10 2 29 182 583472932 583473086 3.290000e-51 213.0
21 TraesCS2D01G417300 chr7D 91.503 153 12 1 36 187 376090514 376090666 4.260000e-50 209.0
22 TraesCS2D01G417300 chr7D 92.000 150 8 3 29 175 419122437 419122289 1.530000e-49 207.0
23 TraesCS2D01G417300 chr7D 92.414 145 9 1 36 178 45837490 45837346 5.510000e-49 206.0
24 TraesCS2D01G417300 chr7D 94.958 119 6 0 4046 4164 192019152 192019270 1.990000e-43 187.0
25 TraesCS2D01G417300 chr5A 92.905 296 17 4 244 537 59194291 59194584 1.080000e-115 427.0
26 TraesCS2D01G417300 chr3D 93.706 286 16 2 251 535 1267823 1267539 1.080000e-115 427.0
27 TraesCS2D01G417300 chr1A 93.151 292 18 2 247 537 485094256 485094546 1.080000e-115 427.0
28 TraesCS2D01G417300 chr1A 91.603 131 8 3 4043 4171 86576673 86576544 1.200000e-40 178.0
29 TraesCS2D01G417300 chr4D 92.414 145 9 1 36 178 75782193 75782049 5.510000e-49 206.0
30 TraesCS2D01G417300 chr6B 91.837 147 10 1 36 180 685981467 685981613 1.980000e-48 204.0
31 TraesCS2D01G417300 chr1D 90.446 157 11 3 29 181 180851722 180851566 1.980000e-48 204.0
32 TraesCS2D01G417300 chr1D 93.130 131 7 2 4033 4163 25454504 25454376 1.540000e-44 191.0
33 TraesCS2D01G417300 chr1D 94.915 118 6 0 4046 4163 469813401 469813518 7.170000e-43 185.0
34 TraesCS2D01G417300 chr1D 92.126 127 10 0 4046 4172 31029195 31029069 3.340000e-41 180.0
35 TraesCS2D01G417300 chrUn 95.726 117 5 0 4046 4162 22143707 22143591 5.540000e-44 189.0
36 TraesCS2D01G417300 chrUn 100.000 31 0 0 3 33 16239852 16239882 1.630000e-04 58.4
37 TraesCS2D01G417300 chrUn 100.000 31 0 0 3 33 34148293 34148323 1.630000e-04 58.4
38 TraesCS2D01G417300 chrUn 100.000 31 0 0 3 33 282032599 282032629 1.630000e-04 58.4
39 TraesCS2D01G417300 chr3B 94.958 119 6 0 4046 4164 40227229 40227111 1.990000e-43 187.0
40 TraesCS2D01G417300 chr6D 91.603 131 9 2 4039 4169 430998459 430998587 3.340000e-41 180.0
41 TraesCS2D01G417300 chr6D 100.000 31 0 0 3 33 11323102 11323072 1.630000e-04 58.4
42 TraesCS2D01G417300 chr6D 100.000 31 0 0 3 33 29193356 29193386 1.630000e-04 58.4
43 TraesCS2D01G417300 chr6D 100.000 31 0 0 3 33 81307149 81307119 1.630000e-04 58.4
44 TraesCS2D01G417300 chr6D 100.000 31 0 0 3 33 99567550 99567580 1.630000e-04 58.4
45 TraesCS2D01G417300 chr6D 100.000 31 0 0 3 33 103982686 103982656 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G417300 chr2D 531675819 531680019 4200 True 7758.00 7758 100.000 1 4201 1 chr2D.!!$R1 4200
1 TraesCS2D01G417300 chr2A 676266572 676271213 4641 True 1085.46 4222 91.289 186 4201 5 chr2A.!!$R3 4015
2 TraesCS2D01G417300 chr2B 631440287 631443911 3624 True 1278.20 3629 94.034 577 4201 4 chr2B.!!$R2 3624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1076 0.250727 TAGCAGCGCTCTTTTTGGGT 60.251 50.0 7.13 2.13 40.44 4.51 F
1235 1331 0.179127 TCGATTCCTTGCTCTCGCTG 60.179 55.0 0.00 0.00 36.97 5.18 F
1718 2773 0.250814 TATTGACGGCCCGTTGGTTT 60.251 50.0 11.54 0.00 41.37 3.27 F
1724 2780 0.384669 CGGCCCGTTGGTTTGTTTTA 59.615 50.0 0.00 0.00 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2642 3739 0.035152 TCTTGCCAATCATCCGCACT 60.035 50.0 0.0 0.0 30.84 4.40 R
3092 4189 0.108662 CCTGCACACATAGCTCGACA 60.109 55.0 0.0 0.0 0.00 4.35 R
3176 4273 0.179065 CAGCCATCCGAGCTTCATCA 60.179 55.0 0.0 0.0 38.95 3.07 R
3255 4352 0.475044 TCCGGGTAACAAGCACCTTT 59.525 50.0 0.0 0.0 36.25 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.807921 TGAAATCTCTAAAAAGACAAATAGGGT 57.192 29.630 0.00 0.00 0.00 4.34
49 50 8.616799 AGACAAATAGGGTCTTTCTAGAGATT 57.383 34.615 0.00 0.00 42.77 2.40
50 51 9.052365 AGACAAATAGGGTCTTTCTAGAGATTT 57.948 33.333 0.00 0.00 42.77 2.17
51 52 9.320352 GACAAATAGGGTCTTTCTAGAGATTTC 57.680 37.037 0.00 0.00 32.54 2.17
52 53 8.826765 ACAAATAGGGTCTTTCTAGAGATTTCA 58.173 33.333 0.00 0.00 0.00 2.69
53 54 9.672673 CAAATAGGGTCTTTCTAGAGATTTCAA 57.327 33.333 0.00 0.00 0.00 2.69
54 55 9.674068 AAATAGGGTCTTTCTAGAGATTTCAAC 57.326 33.333 0.00 0.00 0.00 3.18
55 56 6.688073 AGGGTCTTTCTAGAGATTTCAACA 57.312 37.500 0.00 0.00 0.00 3.33
56 57 7.079451 AGGGTCTTTCTAGAGATTTCAACAA 57.921 36.000 0.00 0.00 0.00 2.83
57 58 7.518188 AGGGTCTTTCTAGAGATTTCAACAAA 58.482 34.615 0.00 0.00 0.00 2.83
58 59 8.166726 AGGGTCTTTCTAGAGATTTCAACAAAT 58.833 33.333 0.00 0.00 34.70 2.32
59 60 8.239998 GGGTCTTTCTAGAGATTTCAACAAATG 58.760 37.037 0.00 0.00 31.94 2.32
60 61 9.003658 GGTCTTTCTAGAGATTTCAACAAATGA 57.996 33.333 0.00 0.00 31.94 2.57
61 62 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
62 63 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
65 66 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
69 70 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
70 71 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
71 72 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
72 73 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
73 74 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
74 75 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
75 76 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
76 77 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
77 78 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
78 79 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
79 80 7.551262 ACAAATGACTACATACGGAGCAAAATA 59.449 33.333 0.00 0.00 35.50 1.40
80 81 8.394877 CAAATGACTACATACGGAGCAAAATAA 58.605 33.333 0.00 0.00 35.50 1.40
81 82 8.500753 AATGACTACATACGGAGCAAAATAAA 57.499 30.769 0.00 0.00 35.50 1.40
82 83 8.677148 ATGACTACATACGGAGCAAAATAAAT 57.323 30.769 0.00 0.00 34.71 1.40
83 84 7.915508 TGACTACATACGGAGCAAAATAAATG 58.084 34.615 0.00 0.00 0.00 2.32
84 85 7.766738 TGACTACATACGGAGCAAAATAAATGA 59.233 33.333 0.00 0.00 0.00 2.57
85 86 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
86 87 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
87 88 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
88 89 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
89 90 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
90 91 9.599322 CATACGGAGCAAAATAAATGAATCTAC 57.401 33.333 0.00 0.00 0.00 2.59
91 92 7.624360 ACGGAGCAAAATAAATGAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
92 93 8.225603 ACGGAGCAAAATAAATGAATCTACAT 57.774 30.769 0.00 0.00 0.00 2.29
93 94 8.686334 ACGGAGCAAAATAAATGAATCTACATT 58.314 29.630 0.00 0.00 41.43 2.71
94 95 9.173939 CGGAGCAAAATAAATGAATCTACATTC 57.826 33.333 0.00 0.00 39.19 2.67
133 134 7.991084 ACATCCATATGTGATAGTCCATTTG 57.009 36.000 1.24 0.00 44.79 2.32
134 135 7.748677 ACATCCATATGTGATAGTCCATTTGA 58.251 34.615 1.24 0.00 44.79 2.69
135 136 8.219868 ACATCCATATGTGATAGTCCATTTGAA 58.780 33.333 1.24 0.00 44.79 2.69
136 137 9.070179 CATCCATATGTGATAGTCCATTTGAAA 57.930 33.333 1.24 0.00 0.00 2.69
137 138 9.818270 ATCCATATGTGATAGTCCATTTGAAAT 57.182 29.630 1.24 0.00 0.00 2.17
138 139 9.288576 TCCATATGTGATAGTCCATTTGAAATC 57.711 33.333 1.24 0.00 0.00 2.17
139 140 9.293404 CCATATGTGATAGTCCATTTGAAATCT 57.707 33.333 1.24 0.00 0.00 2.40
143 144 9.775854 ATGTGATAGTCCATTTGAAATCTCTAG 57.224 33.333 0.00 0.00 0.00 2.43
144 145 8.206867 TGTGATAGTCCATTTGAAATCTCTAGG 58.793 37.037 0.00 0.00 0.00 3.02
145 146 8.424918 GTGATAGTCCATTTGAAATCTCTAGGA 58.575 37.037 0.00 0.00 0.00 2.94
146 147 8.992349 TGATAGTCCATTTGAAATCTCTAGGAA 58.008 33.333 0.00 0.00 0.00 3.36
147 148 9.838339 GATAGTCCATTTGAAATCTCTAGGAAA 57.162 33.333 0.00 0.00 0.00 3.13
149 150 8.341892 AGTCCATTTGAAATCTCTAGGAAAAC 57.658 34.615 0.00 0.00 0.00 2.43
150 151 7.944554 AGTCCATTTGAAATCTCTAGGAAAACA 59.055 33.333 0.00 0.00 0.00 2.83
151 152 8.576442 GTCCATTTGAAATCTCTAGGAAAACAA 58.424 33.333 0.00 0.00 0.00 2.83
152 153 9.142014 TCCATTTGAAATCTCTAGGAAAACAAA 57.858 29.630 0.00 0.00 32.59 2.83
153 154 9.933723 CCATTTGAAATCTCTAGGAAAACAAAT 57.066 29.630 0.00 0.00 35.94 2.32
165 166 9.169592 TCTAGGAAAACAAATATTTAGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
166 167 9.169592 CTAGGAAAACAAATATTTAGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
167 168 8.051901 AGGAAAACAAATATTTAGGAACGGAG 57.948 34.615 0.00 0.00 0.00 4.63
168 169 7.122204 AGGAAAACAAATATTTAGGAACGGAGG 59.878 37.037 0.00 0.00 0.00 4.30
169 170 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
170 171 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
171 172 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
172 173 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
173 174 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
174 175 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
175 176 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
176 177 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
177 178 8.731591 ATATTTAGGAACGGAGGGAGTATTTA 57.268 34.615 0.00 0.00 0.00 1.40
178 179 6.475596 TTTAGGAACGGAGGGAGTATTTAG 57.524 41.667 0.00 0.00 0.00 1.85
179 180 3.306613 AGGAACGGAGGGAGTATTTAGG 58.693 50.000 0.00 0.00 0.00 2.69
180 181 3.052338 AGGAACGGAGGGAGTATTTAGGA 60.052 47.826 0.00 0.00 0.00 2.94
181 182 3.708121 GGAACGGAGGGAGTATTTAGGAA 59.292 47.826 0.00 0.00 0.00 3.36
182 183 4.442612 GGAACGGAGGGAGTATTTAGGAAC 60.443 50.000 0.00 0.00 0.00 3.62
183 184 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
184 185 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
191 192 5.163332 GGGAGTATTTAGGAACGGAGTGATT 60.163 44.000 0.00 0.00 45.00 2.57
195 196 3.947910 TTAGGAACGGAGTGATTTCGT 57.052 42.857 0.00 0.00 45.00 3.85
197 198 1.343465 AGGAACGGAGTGATTTCGTGT 59.657 47.619 0.00 0.00 45.00 4.49
204 205 5.107133 ACGGAGTGATTTCGTGTAAATAGG 58.893 41.667 0.00 0.00 42.51 2.57
205 206 4.506654 CGGAGTGATTTCGTGTAAATAGGG 59.493 45.833 0.00 0.00 37.93 3.53
249 254 2.560105 GGAACAGCCATGCTCTTTCTTT 59.440 45.455 6.82 0.00 36.40 2.52
250 255 3.758554 GGAACAGCCATGCTCTTTCTTTA 59.241 43.478 6.82 0.00 36.40 1.85
251 256 4.142513 GGAACAGCCATGCTCTTTCTTTAG 60.143 45.833 6.82 0.00 36.40 1.85
252 257 4.292186 ACAGCCATGCTCTTTCTTTAGA 57.708 40.909 0.00 0.00 36.40 2.10
253 258 4.006319 ACAGCCATGCTCTTTCTTTAGAC 58.994 43.478 0.00 0.00 36.40 2.59
254 259 4.260170 CAGCCATGCTCTTTCTTTAGACT 58.740 43.478 0.00 0.00 36.40 3.24
255 260 5.046304 ACAGCCATGCTCTTTCTTTAGACTA 60.046 40.000 0.00 0.00 36.40 2.59
256 261 5.523188 CAGCCATGCTCTTTCTTTAGACTAG 59.477 44.000 0.00 0.00 36.40 2.57
257 262 5.188751 AGCCATGCTCTTTCTTTAGACTAGT 59.811 40.000 0.00 0.00 30.62 2.57
258 263 5.522097 GCCATGCTCTTTCTTTAGACTAGTC 59.478 44.000 15.41 15.41 0.00 2.59
259 264 6.634805 CCATGCTCTTTCTTTAGACTAGTCA 58.365 40.000 24.44 8.16 0.00 3.41
260 265 6.533367 CCATGCTCTTTCTTTAGACTAGTCAC 59.467 42.308 24.44 0.00 0.00 3.67
261 266 6.650427 TGCTCTTTCTTTAGACTAGTCACA 57.350 37.500 24.44 9.25 0.00 3.58
262 267 7.050970 TGCTCTTTCTTTAGACTAGTCACAA 57.949 36.000 24.44 14.60 0.00 3.33
263 268 7.671302 TGCTCTTTCTTTAGACTAGTCACAAT 58.329 34.615 24.44 6.62 0.00 2.71
264 269 7.600375 TGCTCTTTCTTTAGACTAGTCACAATG 59.400 37.037 24.44 17.56 0.00 2.82
265 270 7.064016 GCTCTTTCTTTAGACTAGTCACAATGG 59.936 40.741 24.44 12.72 0.00 3.16
266 271 7.386851 TCTTTCTTTAGACTAGTCACAATGGG 58.613 38.462 24.44 8.41 0.00 4.00
267 272 6.681729 TTCTTTAGACTAGTCACAATGGGT 57.318 37.500 24.44 4.04 0.00 4.51
268 273 7.786046 TTCTTTAGACTAGTCACAATGGGTA 57.214 36.000 24.44 3.05 0.00 3.69
269 274 7.406031 TCTTTAGACTAGTCACAATGGGTAG 57.594 40.000 24.44 11.21 0.00 3.18
270 275 6.952358 TCTTTAGACTAGTCACAATGGGTAGT 59.048 38.462 24.44 2.07 0.00 2.73
271 276 8.111545 TCTTTAGACTAGTCACAATGGGTAGTA 58.888 37.037 24.44 1.11 0.00 1.82
272 277 8.654485 TTTAGACTAGTCACAATGGGTAGTAA 57.346 34.615 24.44 7.10 0.00 2.24
273 278 6.527057 AGACTAGTCACAATGGGTAGTAAC 57.473 41.667 24.44 0.00 0.00 2.50
274 279 6.014647 AGACTAGTCACAATGGGTAGTAACA 58.985 40.000 24.44 0.00 0.00 2.41
275 280 6.668283 AGACTAGTCACAATGGGTAGTAACAT 59.332 38.462 24.44 0.00 0.00 2.71
276 281 7.837689 AGACTAGTCACAATGGGTAGTAACATA 59.162 37.037 24.44 0.00 0.00 2.29
277 282 8.008513 ACTAGTCACAATGGGTAGTAACATAG 57.991 38.462 0.00 0.00 0.00 2.23
278 283 7.837689 ACTAGTCACAATGGGTAGTAACATAGA 59.162 37.037 0.00 0.00 0.00 1.98
279 284 7.113658 AGTCACAATGGGTAGTAACATAGAG 57.886 40.000 0.00 0.00 0.00 2.43
280 285 6.668283 AGTCACAATGGGTAGTAACATAGAGT 59.332 38.462 0.00 0.00 0.00 3.24
281 286 7.837689 AGTCACAATGGGTAGTAACATAGAGTA 59.162 37.037 0.00 0.00 0.00 2.59
282 287 8.136165 GTCACAATGGGTAGTAACATAGAGTAG 58.864 40.741 0.00 0.00 0.00 2.57
283 288 7.837689 TCACAATGGGTAGTAACATAGAGTAGT 59.162 37.037 0.00 0.00 0.00 2.73
284 289 9.128404 CACAATGGGTAGTAACATAGAGTAGTA 57.872 37.037 0.00 0.00 0.00 1.82
285 290 9.705103 ACAATGGGTAGTAACATAGAGTAGTAA 57.295 33.333 0.00 0.00 0.00 2.24
286 291 9.962783 CAATGGGTAGTAACATAGAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
287 292 9.705103 AATGGGTAGTAACATAGAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
288 293 9.878737 ATGGGTAGTAACATAGAGTAGTAACAT 57.121 33.333 0.00 0.00 0.00 2.71
289 294 9.128404 TGGGTAGTAACATAGAGTAGTAACATG 57.872 37.037 0.00 0.00 0.00 3.21
290 295 8.574737 GGGTAGTAACATAGAGTAGTAACATGG 58.425 40.741 0.00 0.00 0.00 3.66
291 296 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
292 297 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
293 298 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
294 299 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
295 300 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
308 313 5.428496 CATGGGCATGTTACTGTTCTATG 57.572 43.478 0.00 0.00 34.23 2.23
309 314 4.568072 TGGGCATGTTACTGTTCTATGT 57.432 40.909 0.00 0.00 0.00 2.29
310 315 4.917385 TGGGCATGTTACTGTTCTATGTT 58.083 39.130 0.00 0.00 0.00 2.71
311 316 6.056090 TGGGCATGTTACTGTTCTATGTTA 57.944 37.500 0.00 0.00 0.00 2.41
312 317 5.878116 TGGGCATGTTACTGTTCTATGTTAC 59.122 40.000 0.00 0.00 0.00 2.50
313 318 6.113411 GGGCATGTTACTGTTCTATGTTACT 58.887 40.000 0.00 0.00 0.00 2.24
314 319 7.093245 TGGGCATGTTACTGTTCTATGTTACTA 60.093 37.037 0.00 0.00 0.00 1.82
315 320 7.224167 GGGCATGTTACTGTTCTATGTTACTAC 59.776 40.741 0.00 0.00 0.00 2.73
316 321 7.224167 GGCATGTTACTGTTCTATGTTACTACC 59.776 40.741 0.00 0.00 0.00 3.18
317 322 7.980099 GCATGTTACTGTTCTATGTTACTACCT 59.020 37.037 0.00 0.00 0.00 3.08
318 323 9.517609 CATGTTACTGTTCTATGTTACTACCTC 57.482 37.037 0.00 0.00 0.00 3.85
319 324 8.874744 TGTTACTGTTCTATGTTACTACCTCT 57.125 34.615 0.00 0.00 0.00 3.69
320 325 9.964354 TGTTACTGTTCTATGTTACTACCTCTA 57.036 33.333 0.00 0.00 0.00 2.43
326 331 9.570468 TGTTCTATGTTACTACCTCTATAGTGG 57.430 37.037 17.49 17.49 36.09 4.00
327 332 9.012161 GTTCTATGTTACTACCTCTATAGTGGG 57.988 40.741 21.82 16.23 36.09 4.61
328 333 8.515927 TCTATGTTACTACCTCTATAGTGGGA 57.484 38.462 21.82 14.49 36.09 4.37
329 334 8.952602 TCTATGTTACTACCTCTATAGTGGGAA 58.047 37.037 21.82 10.70 36.09 3.97
330 335 9.233649 CTATGTTACTACCTCTATAGTGGGAAG 57.766 40.741 21.82 19.36 36.09 3.46
331 336 6.978261 TGTTACTACCTCTATAGTGGGAAGT 58.022 40.000 23.48 23.48 36.09 3.01
332 337 8.106017 TGTTACTACCTCTATAGTGGGAAGTA 57.894 38.462 21.82 22.01 36.09 2.24
333 338 8.560039 TGTTACTACCTCTATAGTGGGAAGTAA 58.440 37.037 27.07 27.07 38.04 2.24
334 339 8.845227 GTTACTACCTCTATAGTGGGAAGTAAC 58.155 40.741 33.17 33.17 43.99 2.50
335 340 6.978261 ACTACCTCTATAGTGGGAAGTAACA 58.022 40.000 21.82 0.29 34.02 2.41
336 341 7.593653 ACTACCTCTATAGTGGGAAGTAACAT 58.406 38.462 21.82 3.60 34.02 2.71
337 342 8.730948 ACTACCTCTATAGTGGGAAGTAACATA 58.269 37.037 21.82 4.45 34.02 2.29
338 343 9.756571 CTACCTCTATAGTGGGAAGTAACATAT 57.243 37.037 21.82 2.54 33.22 1.78
339 344 8.423906 ACCTCTATAGTGGGAAGTAACATATG 57.576 38.462 21.82 0.00 33.22 1.78
340 345 8.011290 ACCTCTATAGTGGGAAGTAACATATGT 58.989 37.037 21.82 1.41 33.22 2.29
341 346 8.307483 CCTCTATAGTGGGAAGTAACATATGTG 58.693 40.741 9.63 0.00 0.00 3.21
342 347 8.777578 TCTATAGTGGGAAGTAACATATGTGT 57.222 34.615 9.63 2.63 41.28 3.72
343 348 8.638873 TCTATAGTGGGAAGTAACATATGTGTG 58.361 37.037 9.63 0.00 38.92 3.82
344 349 4.843728 AGTGGGAAGTAACATATGTGTGG 58.156 43.478 9.63 0.00 38.92 4.17
345 350 4.288626 AGTGGGAAGTAACATATGTGTGGT 59.711 41.667 9.63 0.00 38.92 4.16
346 351 5.486063 AGTGGGAAGTAACATATGTGTGGTA 59.514 40.000 9.63 0.00 38.92 3.25
347 352 6.013206 AGTGGGAAGTAACATATGTGTGGTAA 60.013 38.462 9.63 0.00 38.92 2.85
348 353 6.093082 GTGGGAAGTAACATATGTGTGGTAAC 59.907 42.308 9.63 1.91 38.92 2.50
364 369 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
365 370 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
366 371 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
367 372 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
368 373 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
369 374 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
370 375 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
371 376 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
372 377 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
373 378 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
374 379 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
375 380 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
376 381 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
377 382 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
387 392 9.883142 ATTTATTAGGCTATAGACTCATCTTGC 57.117 33.333 12.64 0.00 36.29 4.01
388 393 5.730296 TTAGGCTATAGACTCATCTTGCC 57.270 43.478 12.64 0.00 41.26 4.52
389 394 3.855668 AGGCTATAGACTCATCTTGCCT 58.144 45.455 0.83 0.00 43.78 4.75
390 395 4.230455 AGGCTATAGACTCATCTTGCCTT 58.770 43.478 0.83 0.00 45.01 4.35
391 396 4.040217 AGGCTATAGACTCATCTTGCCTTG 59.960 45.833 0.83 0.00 45.01 3.61
392 397 4.039730 GGCTATAGACTCATCTTGCCTTGA 59.960 45.833 3.21 0.00 39.50 3.02
393 398 5.279910 GGCTATAGACTCATCTTGCCTTGAT 60.280 44.000 3.21 0.00 39.50 2.57
394 399 6.071108 GGCTATAGACTCATCTTGCCTTGATA 60.071 42.308 3.21 0.00 39.50 2.15
395 400 7.364585 GGCTATAGACTCATCTTGCCTTGATAT 60.365 40.741 3.21 0.00 39.50 1.63
396 401 7.492020 GCTATAGACTCATCTTGCCTTGATATG 59.508 40.741 3.21 0.00 36.29 1.78
397 402 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
398 403 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
399 404 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
400 405 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
401 406 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
402 407 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
403 408 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
404 409 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
405 410 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
406 411 5.711506 TCTTGCCTTGATATGTGTGATGTTT 59.288 36.000 0.00 0.00 0.00 2.83
407 412 6.883756 TCTTGCCTTGATATGTGTGATGTTTA 59.116 34.615 0.00 0.00 0.00 2.01
408 413 6.435430 TGCCTTGATATGTGTGATGTTTAC 57.565 37.500 0.00 0.00 0.00 2.01
409 414 6.179756 TGCCTTGATATGTGTGATGTTTACT 58.820 36.000 0.00 0.00 0.00 2.24
410 415 6.316140 TGCCTTGATATGTGTGATGTTTACTC 59.684 38.462 0.00 0.00 0.00 2.59
411 416 6.316140 GCCTTGATATGTGTGATGTTTACTCA 59.684 38.462 0.00 0.00 0.00 3.41
412 417 7.012704 GCCTTGATATGTGTGATGTTTACTCAT 59.987 37.037 0.00 0.00 36.54 2.90
413 418 9.546428 CCTTGATATGTGTGATGTTTACTCATA 57.454 33.333 0.00 0.00 38.26 2.15
442 447 9.982651 AGTAATAACTAGCTATGTTACCACATG 57.017 33.333 14.19 0.00 37.98 3.21
443 448 7.730364 AATAACTAGCTATGTTACCACATGC 57.270 36.000 14.19 1.01 43.92 4.06
444 449 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
445 450 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
446 451 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
447 452 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
448 453 3.134458 GCTATGTTACCACATGCCTCTC 58.866 50.000 0.00 0.00 43.92 3.20
449 454 3.181461 GCTATGTTACCACATGCCTCTCT 60.181 47.826 0.00 0.00 43.92 3.10
450 455 4.684485 GCTATGTTACCACATGCCTCTCTT 60.684 45.833 0.00 0.00 43.92 2.85
451 456 3.788227 TGTTACCACATGCCTCTCTTT 57.212 42.857 0.00 0.00 0.00 2.52
452 457 3.674997 TGTTACCACATGCCTCTCTTTC 58.325 45.455 0.00 0.00 0.00 2.62
453 458 3.327757 TGTTACCACATGCCTCTCTTTCT 59.672 43.478 0.00 0.00 0.00 2.52
454 459 4.202461 TGTTACCACATGCCTCTCTTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
455 460 3.064900 ACCACATGCCTCTCTTTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
456 461 2.373169 ACCACATGCCTCTCTTTCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
457 462 3.009916 ACCACATGCCTCTCTTTCTTCAT 59.990 43.478 0.00 0.00 0.00 2.57
458 463 4.015084 CCACATGCCTCTCTTTCTTCATT 58.985 43.478 0.00 0.00 0.00 2.57
459 464 4.461781 CCACATGCCTCTCTTTCTTCATTT 59.538 41.667 0.00 0.00 0.00 2.32
460 465 5.649395 CCACATGCCTCTCTTTCTTCATTTA 59.351 40.000 0.00 0.00 0.00 1.40
461 466 6.320672 CCACATGCCTCTCTTTCTTCATTTAT 59.679 38.462 0.00 0.00 0.00 1.40
462 467 7.147949 CCACATGCCTCTCTTTCTTCATTTATT 60.148 37.037 0.00 0.00 0.00 1.40
463 468 8.896744 CACATGCCTCTCTTTCTTCATTTATTA 58.103 33.333 0.00 0.00 0.00 0.98
464 469 8.897752 ACATGCCTCTCTTTCTTCATTTATTAC 58.102 33.333 0.00 0.00 0.00 1.89
465 470 9.118300 CATGCCTCTCTTTCTTCATTTATTACT 57.882 33.333 0.00 0.00 0.00 2.24
466 471 9.692325 ATGCCTCTCTTTCTTCATTTATTACTT 57.308 29.630 0.00 0.00 0.00 2.24
467 472 8.950210 TGCCTCTCTTTCTTCATTTATTACTTG 58.050 33.333 0.00 0.00 0.00 3.16
468 473 7.912773 GCCTCTCTTTCTTCATTTATTACTTGC 59.087 37.037 0.00 0.00 0.00 4.01
469 474 8.401709 CCTCTCTTTCTTCATTTATTACTTGCC 58.598 37.037 0.00 0.00 0.00 4.52
470 475 8.862325 TCTCTTTCTTCATTTATTACTTGCCA 57.138 30.769 0.00 0.00 0.00 4.92
471 476 8.730680 TCTCTTTCTTCATTTATTACTTGCCAC 58.269 33.333 0.00 0.00 0.00 5.01
472 477 8.402798 TCTTTCTTCATTTATTACTTGCCACA 57.597 30.769 0.00 0.00 0.00 4.17
473 478 9.023962 TCTTTCTTCATTTATTACTTGCCACAT 57.976 29.630 0.00 0.00 0.00 3.21
474 479 9.294030 CTTTCTTCATTTATTACTTGCCACATC 57.706 33.333 0.00 0.00 0.00 3.06
475 480 7.936496 TCTTCATTTATTACTTGCCACATCA 57.064 32.000 0.00 0.00 0.00 3.07
476 481 8.523915 TCTTCATTTATTACTTGCCACATCAT 57.476 30.769 0.00 0.00 0.00 2.45
477 482 8.970020 TCTTCATTTATTACTTGCCACATCATT 58.030 29.630 0.00 0.00 0.00 2.57
478 483 9.590451 CTTCATTTATTACTTGCCACATCATTT 57.410 29.630 0.00 0.00 0.00 2.32
521 526 9.027202 TGTGATGTTACTAACTATGTTACTCCA 57.973 33.333 0.71 0.00 0.00 3.86
527 532 9.477484 GTTACTAACTATGTTACTCCATCATGG 57.523 37.037 0.00 0.00 39.43 3.66
528 533 7.067496 ACTAACTATGTTACTCCATCATGGG 57.933 40.000 3.05 0.00 38.32 4.00
529 534 5.975988 AACTATGTTACTCCATCATGGGT 57.024 39.130 3.05 3.38 38.32 4.51
530 535 7.787904 ACTAACTATGTTACTCCATCATGGGTA 59.212 37.037 3.05 2.33 38.32 3.69
531 536 6.672266 ACTATGTTACTCCATCATGGGTAG 57.328 41.667 3.05 0.00 38.32 3.18
532 537 6.143915 ACTATGTTACTCCATCATGGGTAGT 58.856 40.000 3.05 3.37 38.32 2.73
533 538 5.552870 ATGTTACTCCATCATGGGTAGTC 57.447 43.478 3.05 3.92 38.32 2.59
547 552 2.821969 GGGTAGTCTAACCGAGTGTTCA 59.178 50.000 0.00 0.00 40.73 3.18
559 564 2.680805 CGAGTGTTCAGGCCCAATACAT 60.681 50.000 12.71 1.02 0.00 2.29
567 576 0.740737 GGCCCAATACATGTGCACTC 59.259 55.000 19.41 0.00 33.59 3.51
570 579 2.940971 GCCCAATACATGTGCACTCTCA 60.941 50.000 19.41 0.00 32.03 3.27
572 581 3.314357 CCCAATACATGTGCACTCTCATG 59.686 47.826 19.41 15.26 45.05 3.07
590 599 3.514706 TCATGCACATTACAGCCCATTTT 59.485 39.130 0.00 0.00 0.00 1.82
635 644 3.782443 CAGACCTACGGGGCCCAC 61.782 72.222 26.86 12.50 43.15 4.61
649 658 1.068816 GGCCCACGTGTGAATAACAAC 60.069 52.381 15.65 0.00 41.57 3.32
651 660 1.538075 CCCACGTGTGAATAACAACCC 59.462 52.381 15.65 0.00 41.57 4.11
665 674 6.937436 ATAACAACCCGAGATATTTTCACC 57.063 37.500 0.00 0.00 0.00 4.02
843 907 3.844090 GGCTCGGTCTCTCCCTGC 61.844 72.222 0.00 0.00 0.00 4.85
930 994 1.456705 ATCGTCTGCTCCTCCTCCC 60.457 63.158 0.00 0.00 0.00 4.30
983 1073 4.229096 TGAATTTAGCAGCGCTCTTTTTG 58.771 39.130 7.13 0.00 40.44 2.44
986 1076 0.250727 TAGCAGCGCTCTTTTTGGGT 60.251 50.000 7.13 2.13 40.44 4.51
988 1078 1.372128 CAGCGCTCTTTTTGGGTGC 60.372 57.895 7.13 0.00 36.82 5.01
989 1079 1.529244 AGCGCTCTTTTTGGGTGCT 60.529 52.632 2.64 0.00 41.18 4.40
990 1080 1.372128 GCGCTCTTTTTGGGTGCTG 60.372 57.895 0.00 0.00 34.21 4.41
991 1081 1.286880 CGCTCTTTTTGGGTGCTGG 59.713 57.895 0.00 0.00 0.00 4.85
992 1082 1.455383 CGCTCTTTTTGGGTGCTGGT 61.455 55.000 0.00 0.00 0.00 4.00
993 1083 0.752658 GCTCTTTTTGGGTGCTGGTT 59.247 50.000 0.00 0.00 0.00 3.67
994 1084 1.138859 GCTCTTTTTGGGTGCTGGTTT 59.861 47.619 0.00 0.00 0.00 3.27
997 1087 3.366396 TCTTTTTGGGTGCTGGTTTGTA 58.634 40.909 0.00 0.00 0.00 2.41
998 1088 3.964031 TCTTTTTGGGTGCTGGTTTGTAT 59.036 39.130 0.00 0.00 0.00 2.29
1033 1126 6.729569 ACTTAACTGTAAGGGTAGGTTCTCAT 59.270 38.462 0.00 0.00 41.03 2.90
1036 1129 4.192317 CTGTAAGGGTAGGTTCTCATTGC 58.808 47.826 0.00 0.00 0.00 3.56
1042 1135 2.436417 GTAGGTTCTCATTGCCAAGCA 58.564 47.619 0.00 0.00 36.47 3.91
1066 1162 0.322816 TCCTCATTGCCTTCCACAGC 60.323 55.000 0.00 0.00 0.00 4.40
1071 1167 0.610232 ATTGCCTTCCACAGCTCCAC 60.610 55.000 0.00 0.00 0.00 4.02
1235 1331 0.179127 TCGATTCCTTGCTCTCGCTG 60.179 55.000 0.00 0.00 36.97 5.18
1244 1340 2.967599 TGCTCTCGCTGTACAATCAT 57.032 45.000 0.00 0.00 36.97 2.45
1300 1397 7.521748 GCTTGAATGGATTCTTATGTCATCTGG 60.522 40.741 1.26 0.00 37.67 3.86
1322 1419 6.533730 TGGAGGTTAGCCAATTGAGTATATG 58.466 40.000 7.12 0.00 37.19 1.78
1373 1471 6.019318 GTCAAAATGGATGTTTATGATGCTGC 60.019 38.462 0.00 0.00 0.00 5.25
1406 1504 8.712363 CGTATGAATGGTAATCATTAGAAGTGG 58.288 37.037 0.00 0.00 45.36 4.00
1414 2446 3.071874 TCATTAGAAGTGGGGTTGCTG 57.928 47.619 0.00 0.00 0.00 4.41
1437 2469 6.872920 TGTTCCATAGCAAAACTTTTTCAGT 58.127 32.000 0.00 0.00 37.30 3.41
1441 2473 6.015772 TCCATAGCAAAACTTTTTCAGTACCC 60.016 38.462 0.00 0.00 32.94 3.69
1446 2478 2.632987 ACTTTTTCAGTACCCGTGCT 57.367 45.000 0.00 0.00 31.97 4.40
1449 2481 1.225376 TTTTCAGTACCCGTGCTGCG 61.225 55.000 7.94 0.00 42.03 5.18
1469 2502 2.159379 CGCTTTAACTCCCATGCCTTTC 60.159 50.000 0.00 0.00 0.00 2.62
1486 2519 5.824624 TGCCTTTCTCTAGCTTATTGATTGG 59.175 40.000 0.00 0.00 0.00 3.16
1510 2556 6.644592 GGCAAATTGCTGTAACATTAAAGACA 59.355 34.615 18.04 0.00 44.28 3.41
1566 2612 9.226345 GCTAGGAACAAAAATTATTCAGATTCG 57.774 33.333 0.00 0.00 0.00 3.34
1607 2654 4.214971 CAGTTGTGGATATCTTATGCAGCC 59.785 45.833 2.05 0.00 0.00 4.85
1646 2701 8.598075 GTGCCATTTTACATTGAATTTGAGATC 58.402 33.333 0.00 0.00 0.00 2.75
1659 2714 6.215431 TGAATTTGAGATCCCCTTTCAGTCTA 59.785 38.462 0.00 0.00 0.00 2.59
1669 2724 5.491078 TCCCCTTTCAGTCTACACCATTATT 59.509 40.000 0.00 0.00 0.00 1.40
1670 2725 5.823045 CCCCTTTCAGTCTACACCATTATTC 59.177 44.000 0.00 0.00 0.00 1.75
1671 2726 5.823045 CCCTTTCAGTCTACACCATTATTCC 59.177 44.000 0.00 0.00 0.00 3.01
1699 2754 7.928706 GTGATTACATTCTGGCAGATAACTACT 59.071 37.037 19.50 0.81 0.00 2.57
1703 2758 9.764363 TTACATTCTGGCAGATAACTACTATTG 57.236 33.333 19.50 0.69 0.00 1.90
1717 2772 0.675522 CTATTGACGGCCCGTTGGTT 60.676 55.000 11.54 0.00 41.37 3.67
1718 2773 0.250814 TATTGACGGCCCGTTGGTTT 60.251 50.000 11.54 0.00 41.37 3.27
1724 2780 0.384669 CGGCCCGTTGGTTTGTTTTA 59.615 50.000 0.00 0.00 0.00 1.52
1752 2808 5.242838 TCATTTTGGTTTCGGTAGAATGCTT 59.757 36.000 0.00 0.00 36.09 3.91
1817 2873 1.599071 CGCTCACTCTCTGTTTGCAAA 59.401 47.619 8.05 8.05 0.00 3.68
1828 2922 6.264832 TCTCTGTTTGCAAACACTGTTTATG 58.735 36.000 35.10 23.94 43.45 1.90
1879 2973 1.200519 TAGGATCCCAACCTCAACGG 58.799 55.000 8.55 0.00 38.76 4.44
1887 2981 3.063197 AACCTCAACGGGTTGGCCA 62.063 57.895 0.00 0.00 46.51 5.36
1963 3057 2.271800 GAGAGGTATCAGCAACAACCG 58.728 52.381 0.00 0.00 37.09 4.44
2038 3132 5.779771 TCCTGTCCCAATTAAAAAGATGCTT 59.220 36.000 0.00 0.00 0.00 3.91
2131 3225 3.988379 TTGCTTTTACCAGAGCTTGTG 57.012 42.857 0.00 0.00 39.60 3.33
2157 3251 3.795623 TGCCTACGAAGTCCTTGATAC 57.204 47.619 0.00 0.00 43.93 2.24
2225 3319 6.546403 TGTTACAGTTTATGGTTGCAGGTAAA 59.454 34.615 0.00 0.00 0.00 2.01
2245 3339 7.119846 AGGTAAACACTAAATTCTGATCTGTGC 59.880 37.037 0.00 0.00 0.00 4.57
2296 3390 3.450904 TCAAGACCCTTGTATAGGCACT 58.549 45.455 6.59 0.00 43.27 4.40
2328 3425 3.080319 TCATGTGACATGATTCGGCAAA 58.920 40.909 23.25 0.00 0.00 3.68
2486 3583 1.600957 GGATCCATCAACGATGTGCTG 59.399 52.381 6.95 0.00 38.28 4.41
2487 3584 1.003116 GATCCATCAACGATGTGCTGC 60.003 52.381 3.47 0.00 38.28 5.25
2577 3674 2.632377 TCGACAGGATTCCAGCAATTC 58.368 47.619 5.29 0.00 0.00 2.17
2846 3943 4.947147 GTCCGGCAGGGTGTTGCA 62.947 66.667 2.05 0.00 45.86 4.08
3005 4102 2.093711 TGTTGTGGATGAGGTCATACCG 60.094 50.000 0.00 0.00 44.90 4.02
3176 4273 4.102598 CTGATATCATCATCCCAGACCCT 58.897 47.826 5.72 0.00 38.85 4.34
3255 4352 0.322456 CGGAGTCCAAATTCCAGCCA 60.322 55.000 10.49 0.00 30.77 4.75
3439 4542 1.208293 GATCCCCGAATATCCTGCCTC 59.792 57.143 0.00 0.00 0.00 4.70
3476 4579 7.507277 TCTTCCTAGTGATACTATGCATCTTGT 59.493 37.037 0.19 3.70 29.08 3.16
3499 4602 2.256174 CCATTTGATCACTGCTTTGCG 58.744 47.619 0.00 0.00 0.00 4.85
3555 4658 2.484417 GGATGTCCTCTGCTATGGTGTG 60.484 54.545 0.00 0.00 0.00 3.82
3561 4664 5.602561 TGTCCTCTGCTATGGTGTGTATAAT 59.397 40.000 0.00 0.00 0.00 1.28
3584 4687 2.710377 TGTTTAATGGCGTGAGATGCT 58.290 42.857 0.00 0.00 0.00 3.79
3585 4688 3.867857 TGTTTAATGGCGTGAGATGCTA 58.132 40.909 0.00 0.00 0.00 3.49
3652 4755 0.850883 AGATGGCTTCCCCCTTTCCA 60.851 55.000 0.00 0.00 0.00 3.53
3707 4810 5.433526 TCTTGGGATTAAACTAATCACCGG 58.566 41.667 0.00 0.00 45.76 5.28
3932 5035 4.345257 GGATGGTTAGAGAGCCATGAAGTA 59.655 45.833 0.36 0.00 44.73 2.24
3965 5068 9.884465 GTATATTTGTTTCTGAAGGATGTATGC 57.116 33.333 0.00 0.00 0.00 3.14
3996 5099 1.213678 AGCCAGCCTGATCAATGCTTA 59.786 47.619 14.93 0.00 31.77 3.09
4046 5149 8.352201 GCAGATATCATAAACCATTTGCAGTTA 58.648 33.333 5.32 0.00 30.98 2.24
4047 5150 9.669353 CAGATATCATAAACCATTTGCAGTTAC 57.331 33.333 5.32 0.00 0.00 2.50
4048 5151 9.632638 AGATATCATAAACCATTTGCAGTTACT 57.367 29.630 5.32 0.00 0.00 2.24
4049 5152 9.884465 GATATCATAAACCATTTGCAGTTACTC 57.116 33.333 0.00 0.00 0.00 2.59
4050 5153 6.509418 TCATAAACCATTTGCAGTTACTCC 57.491 37.500 0.00 0.00 0.00 3.85
4051 5154 5.417580 TCATAAACCATTTGCAGTTACTCCC 59.582 40.000 0.00 0.00 0.00 4.30
4052 5155 3.525800 AACCATTTGCAGTTACTCCCT 57.474 42.857 0.00 0.00 0.00 4.20
4053 5156 3.073274 ACCATTTGCAGTTACTCCCTC 57.927 47.619 0.00 0.00 0.00 4.30
4054 5157 2.290960 ACCATTTGCAGTTACTCCCTCC 60.291 50.000 0.00 0.00 0.00 4.30
4055 5158 2.009774 CATTTGCAGTTACTCCCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
4056 5159 1.053424 TTTGCAGTTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
4057 5160 0.606604 TTGCAGTTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
4058 5161 1.255667 TGCAGTTACTCCCTCCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
4059 5162 1.807886 CAGTTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
4060 5163 1.379576 AGTTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
4061 5164 1.379044 GTTACTCCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
4062 5165 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
4063 5166 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4064 5167 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4065 5168 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4066 5169 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4067 5170 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4068 5171 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4069 5172 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4070 5173 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4071 5174 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4072 5175 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4073 5176 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
4074 5177 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
4075 5178 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
4076 5179 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
4077 5180 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
4078 5181 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
4079 5182 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
4080 5183 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
4081 5184 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
4082 5185 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
4083 5186 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
4084 5187 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
4085 5188 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
4086 5189 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
4087 5190 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
4088 5191 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
4089 5192 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
4090 5193 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
4091 5194 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
4092 5195 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
4093 5196 6.721668 TGTCGGAGAAATGGATGTATCTAGAT 59.278 38.462 10.73 10.73 39.69 1.98
4094 5197 7.032580 GTCGGAGAAATGGATGTATCTAGATG 58.967 42.308 15.79 0.00 39.69 2.90
4095 5198 6.721668 TCGGAGAAATGGATGTATCTAGATGT 59.278 38.462 15.79 1.25 0.00 3.06
4096 5199 7.888546 TCGGAGAAATGGATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
4097 5200 8.690884 CGGAGAAATGGATGTATCTAGATGTAT 58.309 37.037 15.79 9.11 0.00 2.29
4150 5253 9.332502 TCCATTTCTTCGATAAATATTTTCGGA 57.667 29.630 21.59 16.58 33.82 4.55
4151 5254 9.382244 CCATTTCTTCGATAAATATTTTCGGAC 57.618 33.333 21.59 6.42 33.82 4.79
4152 5255 9.092322 CATTTCTTCGATAAATATTTTCGGACG 57.908 33.333 21.59 14.25 33.82 4.79
4153 5256 6.758593 TCTTCGATAAATATTTTCGGACGG 57.241 37.500 21.59 10.63 33.82 4.79
4154 5257 6.506147 TCTTCGATAAATATTTTCGGACGGA 58.494 36.000 21.59 12.01 33.82 4.69
4155 5258 6.639686 TCTTCGATAAATATTTTCGGACGGAG 59.360 38.462 21.59 16.31 33.82 4.63
4156 5259 5.224888 TCGATAAATATTTTCGGACGGAGG 58.775 41.667 21.59 3.88 33.82 4.30
4157 5260 4.387862 CGATAAATATTTTCGGACGGAGGG 59.612 45.833 5.91 0.00 0.00 4.30
4158 5261 3.918294 AAATATTTTCGGACGGAGGGA 57.082 42.857 0.00 0.00 0.00 4.20
4159 5262 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
4160 5263 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.807921 ACCCTATTTGTCTTTTTAGAGATTTCA 57.192 29.630 0.00 0.00 0.00 2.69
24 25 8.616799 AATCTCTAGAAAGACCCTATTTGTCT 57.383 34.615 0.00 0.00 44.75 3.41
25 26 9.320352 GAAATCTCTAGAAAGACCCTATTTGTC 57.680 37.037 0.00 0.00 0.00 3.18
26 27 8.826765 TGAAATCTCTAGAAAGACCCTATTTGT 58.173 33.333 0.00 0.00 0.00 2.83
27 28 9.672673 TTGAAATCTCTAGAAAGACCCTATTTG 57.327 33.333 0.00 0.00 0.00 2.32
28 29 9.674068 GTTGAAATCTCTAGAAAGACCCTATTT 57.326 33.333 0.00 0.00 0.00 1.40
29 30 8.826765 TGTTGAAATCTCTAGAAAGACCCTATT 58.173 33.333 0.00 0.00 0.00 1.73
30 31 8.380742 TGTTGAAATCTCTAGAAAGACCCTAT 57.619 34.615 0.00 0.00 0.00 2.57
31 32 7.792364 TGTTGAAATCTCTAGAAAGACCCTA 57.208 36.000 0.00 0.00 0.00 3.53
32 33 6.688073 TGTTGAAATCTCTAGAAAGACCCT 57.312 37.500 0.00 0.00 0.00 4.34
33 34 7.745620 TTTGTTGAAATCTCTAGAAAGACCC 57.254 36.000 0.00 0.00 0.00 4.46
34 35 9.003658 TCATTTGTTGAAATCTCTAGAAAGACC 57.996 33.333 0.00 0.00 28.65 3.85
35 36 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
36 37 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
39 40 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
43 44 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
44 45 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
45 46 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
46 47 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
47 48 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
48 49 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
49 50 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
50 51 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
51 52 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
52 53 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
53 54 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
54 55 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
55 56 8.500753 TTATTTTGCTCCGTATGTAGTCATTT 57.499 30.769 0.00 0.00 35.70 2.32
56 57 8.500753 TTTATTTTGCTCCGTATGTAGTCATT 57.499 30.769 0.00 0.00 35.70 2.57
57 58 8.559536 CATTTATTTTGCTCCGTATGTAGTCAT 58.440 33.333 0.00 0.00 38.00 3.06
58 59 7.766738 TCATTTATTTTGCTCCGTATGTAGTCA 59.233 33.333 0.00 0.00 0.00 3.41
59 60 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
60 61 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
61 62 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
62 63 9.337396 AGATTCATTTATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
63 64 8.225603 AGATTCATTTATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
64 65 9.599322 GTAGATTCATTTATTTTGCTCCGTATG 57.401 33.333 0.00 0.00 0.00 2.39
65 66 9.337396 TGTAGATTCATTTATTTTGCTCCGTAT 57.663 29.630 0.00 0.00 0.00 3.06
66 67 8.725405 TGTAGATTCATTTATTTTGCTCCGTA 57.275 30.769 0.00 0.00 0.00 4.02
67 68 7.624360 TGTAGATTCATTTATTTTGCTCCGT 57.376 32.000 0.00 0.00 0.00 4.69
68 69 9.173939 GAATGTAGATTCATTTATTTTGCTCCG 57.826 33.333 7.69 0.00 38.33 4.63
107 108 9.676861 CAAATGGACTATCACATATGGATGTAT 57.323 33.333 7.80 0.00 44.82 2.29
108 109 8.879227 TCAAATGGACTATCACATATGGATGTA 58.121 33.333 7.80 0.00 44.82 2.29
110 111 8.625786 TTCAAATGGACTATCACATATGGATG 57.374 34.615 7.80 0.00 39.16 3.51
111 112 9.818270 ATTTCAAATGGACTATCACATATGGAT 57.182 29.630 7.80 9.38 0.00 3.41
112 113 9.288576 GATTTCAAATGGACTATCACATATGGA 57.711 33.333 7.80 2.05 0.00 3.41
113 114 9.293404 AGATTTCAAATGGACTATCACATATGG 57.707 33.333 7.80 0.00 0.00 2.74
117 118 9.775854 CTAGAGATTTCAAATGGACTATCACAT 57.224 33.333 0.00 0.00 0.00 3.21
118 119 8.206867 CCTAGAGATTTCAAATGGACTATCACA 58.793 37.037 0.00 0.00 0.00 3.58
119 120 8.424918 TCCTAGAGATTTCAAATGGACTATCAC 58.575 37.037 0.00 0.00 0.00 3.06
120 121 8.553085 TCCTAGAGATTTCAAATGGACTATCA 57.447 34.615 0.00 0.00 0.00 2.15
121 122 9.838339 TTTCCTAGAGATTTCAAATGGACTATC 57.162 33.333 0.00 0.00 0.00 2.08
123 124 9.449719 GTTTTCCTAGAGATTTCAAATGGACTA 57.550 33.333 0.00 0.00 0.00 2.59
124 125 7.944554 TGTTTTCCTAGAGATTTCAAATGGACT 59.055 33.333 0.00 0.00 0.00 3.85
125 126 8.110860 TGTTTTCCTAGAGATTTCAAATGGAC 57.889 34.615 0.00 0.00 0.00 4.02
126 127 8.704849 TTGTTTTCCTAGAGATTTCAAATGGA 57.295 30.769 0.00 0.00 0.00 3.41
127 128 9.933723 ATTTGTTTTCCTAGAGATTTCAAATGG 57.066 29.630 0.00 0.00 32.33 3.16
139 140 9.169592 CCGTTCCTAAATATTTGTTTTCCTAGA 57.830 33.333 11.05 0.00 0.00 2.43
140 141 9.169592 TCCGTTCCTAAATATTTGTTTTCCTAG 57.830 33.333 11.05 0.00 0.00 3.02
141 142 9.169592 CTCCGTTCCTAAATATTTGTTTTCCTA 57.830 33.333 11.05 0.00 0.00 2.94
142 143 7.122204 CCTCCGTTCCTAAATATTTGTTTTCCT 59.878 37.037 11.05 0.00 0.00 3.36
143 144 7.255569 CCTCCGTTCCTAAATATTTGTTTTCC 58.744 38.462 11.05 0.00 0.00 3.13
144 145 7.121611 TCCCTCCGTTCCTAAATATTTGTTTTC 59.878 37.037 11.05 0.00 0.00 2.29
145 146 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
146 147 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
147 148 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
148 149 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
149 150 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
150 151 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
151 152 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
152 153 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
153 154 7.234166 CCTAAATACTCCCTCCGTTCCTAAATA 59.766 40.741 0.00 0.00 0.00 1.40
154 155 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
155 156 5.364735 CCTAAATACTCCCTCCGTTCCTAAA 59.635 44.000 0.00 0.00 0.00 1.85
156 157 4.897670 CCTAAATACTCCCTCCGTTCCTAA 59.102 45.833 0.00 0.00 0.00 2.69
157 158 4.168675 TCCTAAATACTCCCTCCGTTCCTA 59.831 45.833 0.00 0.00 0.00 2.94
158 159 3.052338 TCCTAAATACTCCCTCCGTTCCT 60.052 47.826 0.00 0.00 0.00 3.36
159 160 3.303049 TCCTAAATACTCCCTCCGTTCC 58.697 50.000 0.00 0.00 0.00 3.62
160 161 4.691175 GTTCCTAAATACTCCCTCCGTTC 58.309 47.826 0.00 0.00 0.00 3.95
161 162 3.131755 CGTTCCTAAATACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
162 163 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
163 164 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
164 165 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
165 166 3.959449 ACTCCGTTCCTAAATACTCCCTC 59.041 47.826 0.00 0.00 0.00 4.30
166 167 3.705072 CACTCCGTTCCTAAATACTCCCT 59.295 47.826 0.00 0.00 0.00 4.20
167 168 3.703052 TCACTCCGTTCCTAAATACTCCC 59.297 47.826 0.00 0.00 0.00 4.30
168 169 4.996788 TCACTCCGTTCCTAAATACTCC 57.003 45.455 0.00 0.00 0.00 3.85
169 170 6.198591 CGAAATCACTCCGTTCCTAAATACTC 59.801 42.308 0.00 0.00 0.00 2.59
170 171 6.040878 CGAAATCACTCCGTTCCTAAATACT 58.959 40.000 0.00 0.00 0.00 2.12
171 172 5.809051 ACGAAATCACTCCGTTCCTAAATAC 59.191 40.000 0.00 0.00 32.03 1.89
172 173 5.808540 CACGAAATCACTCCGTTCCTAAATA 59.191 40.000 0.00 0.00 33.96 1.40
173 174 4.630069 CACGAAATCACTCCGTTCCTAAAT 59.370 41.667 0.00 0.00 33.96 1.40
174 175 3.991773 CACGAAATCACTCCGTTCCTAAA 59.008 43.478 0.00 0.00 33.96 1.85
175 176 3.006110 ACACGAAATCACTCCGTTCCTAA 59.994 43.478 0.00 0.00 33.96 2.69
176 177 2.559668 ACACGAAATCACTCCGTTCCTA 59.440 45.455 0.00 0.00 33.96 2.94
177 178 1.343465 ACACGAAATCACTCCGTTCCT 59.657 47.619 0.00 0.00 33.96 3.36
178 179 1.792006 ACACGAAATCACTCCGTTCC 58.208 50.000 0.00 0.00 33.96 3.62
179 180 4.977741 TTTACACGAAATCACTCCGTTC 57.022 40.909 0.00 0.00 33.96 3.95
180 181 5.579511 CCTATTTACACGAAATCACTCCGTT 59.420 40.000 0.00 0.00 38.70 4.44
181 182 5.107133 CCTATTTACACGAAATCACTCCGT 58.893 41.667 0.00 0.00 38.70 4.69
182 183 4.506654 CCCTATTTACACGAAATCACTCCG 59.493 45.833 0.00 0.00 38.70 4.63
183 184 5.667466 TCCCTATTTACACGAAATCACTCC 58.333 41.667 0.00 0.00 38.70 3.85
184 185 7.787725 ATTCCCTATTTACACGAAATCACTC 57.212 36.000 0.00 0.00 38.70 3.51
204 205 5.008331 ACTCGGTTAAAGAAAGGGAATTCC 58.992 41.667 16.74 16.74 0.00 3.01
205 206 5.106277 CCACTCGGTTAAAGAAAGGGAATTC 60.106 44.000 0.00 0.00 0.00 2.17
249 254 7.177184 TGTTACTACCCATTGTGACTAGTCTA 58.823 38.462 23.01 10.02 0.00 2.59
250 255 6.014647 TGTTACTACCCATTGTGACTAGTCT 58.985 40.000 23.01 0.19 0.00 3.24
251 256 6.276832 TGTTACTACCCATTGTGACTAGTC 57.723 41.667 16.32 16.32 0.00 2.59
252 257 6.869206 ATGTTACTACCCATTGTGACTAGT 57.131 37.500 0.00 0.00 0.00 2.57
253 258 8.234136 TCTATGTTACTACCCATTGTGACTAG 57.766 38.462 0.00 0.00 0.00 2.57
254 259 7.837689 ACTCTATGTTACTACCCATTGTGACTA 59.162 37.037 0.00 0.00 0.00 2.59
255 260 6.668283 ACTCTATGTTACTACCCATTGTGACT 59.332 38.462 0.00 0.00 0.00 3.41
256 261 6.875076 ACTCTATGTTACTACCCATTGTGAC 58.125 40.000 0.00 0.00 0.00 3.67
257 262 7.837689 ACTACTCTATGTTACTACCCATTGTGA 59.162 37.037 0.00 0.00 0.00 3.58
258 263 8.008513 ACTACTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
259 264 9.705103 TTACTACTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
260 265 9.962783 GTTACTACTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
261 266 9.705103 TGTTACTACTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
262 267 9.878737 ATGTTACTACTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
263 268 9.128404 CATGTTACTACTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
264 269 8.574737 CCATGTTACTACTCTATGTTACTACCC 58.425 40.741 0.00 0.00 0.00 3.69
265 270 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
266 271 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
267 272 7.781219 TGCCCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
268 273 6.610020 TGCCCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
269 274 6.812998 TGCCCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
270 275 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
271 276 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
272 277 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
286 291 4.883585 ACATAGAACAGTAACATGCCCATG 59.116 41.667 6.71 6.71 44.15 3.66
287 292 5.116084 ACATAGAACAGTAACATGCCCAT 57.884 39.130 0.00 0.00 0.00 4.00
288 293 4.568072 ACATAGAACAGTAACATGCCCA 57.432 40.909 0.00 0.00 0.00 5.36
289 294 6.113411 AGTAACATAGAACAGTAACATGCCC 58.887 40.000 0.00 0.00 0.00 5.36
290 295 7.224167 GGTAGTAACATAGAACAGTAACATGCC 59.776 40.741 0.00 0.00 0.00 4.40
291 296 7.980099 AGGTAGTAACATAGAACAGTAACATGC 59.020 37.037 0.00 0.00 0.00 4.06
292 297 9.517609 GAGGTAGTAACATAGAACAGTAACATG 57.482 37.037 0.00 0.00 0.00 3.21
293 298 9.476928 AGAGGTAGTAACATAGAACAGTAACAT 57.523 33.333 0.00 0.00 0.00 2.71
294 299 8.874744 AGAGGTAGTAACATAGAACAGTAACA 57.125 34.615 0.00 0.00 0.00 2.41
300 305 9.570468 CCACTATAGAGGTAGTAACATAGAACA 57.430 37.037 6.78 0.00 33.29 3.18
301 306 9.012161 CCCACTATAGAGGTAGTAACATAGAAC 57.988 40.741 14.29 0.00 33.29 3.01
302 307 8.952602 TCCCACTATAGAGGTAGTAACATAGAA 58.047 37.037 14.29 0.00 33.29 2.10
303 308 8.515927 TCCCACTATAGAGGTAGTAACATAGA 57.484 38.462 14.29 0.00 33.29 1.98
304 309 9.233649 CTTCCCACTATAGAGGTAGTAACATAG 57.766 40.741 14.29 0.00 33.29 2.23
305 310 8.730948 ACTTCCCACTATAGAGGTAGTAACATA 58.269 37.037 17.73 0.00 33.29 2.29
306 311 7.593653 ACTTCCCACTATAGAGGTAGTAACAT 58.406 38.462 17.73 1.67 33.29 2.71
307 312 6.978261 ACTTCCCACTATAGAGGTAGTAACA 58.022 40.000 17.73 0.00 33.29 2.41
308 313 8.845227 GTTACTTCCCACTATAGAGGTAGTAAC 58.155 40.741 31.13 31.13 40.31 2.50
309 314 8.560039 TGTTACTTCCCACTATAGAGGTAGTAA 58.440 37.037 24.67 24.67 33.29 2.24
310 315 8.106017 TGTTACTTCCCACTATAGAGGTAGTA 57.894 38.462 19.39 19.39 33.29 1.82
311 316 6.978261 TGTTACTTCCCACTATAGAGGTAGT 58.022 40.000 20.74 20.74 35.34 2.73
312 317 9.756571 ATATGTTACTTCCCACTATAGAGGTAG 57.243 37.037 14.29 14.29 0.00 3.18
313 318 9.529823 CATATGTTACTTCCCACTATAGAGGTA 57.470 37.037 14.29 0.00 0.00 3.08
314 319 8.011290 ACATATGTTACTTCCCACTATAGAGGT 58.989 37.037 14.29 0.00 0.00 3.85
315 320 8.307483 CACATATGTTACTTCCCACTATAGAGG 58.693 40.741 5.37 8.10 0.00 3.69
316 321 8.861086 ACACATATGTTACTTCCCACTATAGAG 58.139 37.037 5.37 0.00 34.46 2.43
317 322 8.638873 CACACATATGTTACTTCCCACTATAGA 58.361 37.037 5.37 0.00 36.72 1.98
318 323 7.872993 CCACACATATGTTACTTCCCACTATAG 59.127 40.741 5.37 0.00 36.72 1.31
319 324 7.346175 ACCACACATATGTTACTTCCCACTATA 59.654 37.037 5.37 0.00 36.72 1.31
320 325 6.157994 ACCACACATATGTTACTTCCCACTAT 59.842 38.462 5.37 0.00 36.72 2.12
321 326 5.486063 ACCACACATATGTTACTTCCCACTA 59.514 40.000 5.37 0.00 36.72 2.74
322 327 4.288626 ACCACACATATGTTACTTCCCACT 59.711 41.667 5.37 0.00 36.72 4.00
323 328 4.585879 ACCACACATATGTTACTTCCCAC 58.414 43.478 5.37 0.00 36.72 4.61
324 329 4.919774 ACCACACATATGTTACTTCCCA 57.080 40.909 5.37 0.00 36.72 4.37
325 330 6.174760 TGTTACCACACATATGTTACTTCCC 58.825 40.000 5.37 0.00 36.72 3.97
326 331 7.678690 GCATGTTACCACACATATGTTACTTCC 60.679 40.741 5.37 0.00 36.72 3.46
327 332 7.148323 TGCATGTTACCACACATATGTTACTTC 60.148 37.037 5.37 0.00 36.72 3.01
328 333 6.657117 TGCATGTTACCACACATATGTTACTT 59.343 34.615 5.37 0.00 36.72 2.24
329 334 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
330 335 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
331 336 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
332 337 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
333 338 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
334 339 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
335 340 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
336 341 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
337 342 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
338 343 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
339 344 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
340 345 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
341 346 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
342 347 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
343 348 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
344 349 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
345 350 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
346 351 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
347 352 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
348 353 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
349 354 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
350 355 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
351 356 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
361 366 9.883142 GCAAGATGAGTCTATAGCCTAATAAAT 57.117 33.333 0.00 0.00 33.30 1.40
362 367 8.314751 GGCAAGATGAGTCTATAGCCTAATAAA 58.685 37.037 0.00 0.00 40.78 1.40
363 368 7.676043 AGGCAAGATGAGTCTATAGCCTAATAA 59.324 37.037 13.74 0.00 46.63 1.40
364 369 7.185565 AGGCAAGATGAGTCTATAGCCTAATA 58.814 38.462 13.74 0.00 46.63 0.98
365 370 6.022315 AGGCAAGATGAGTCTATAGCCTAAT 58.978 40.000 13.74 0.00 46.63 1.73
366 371 5.398236 AGGCAAGATGAGTCTATAGCCTAA 58.602 41.667 13.74 0.00 46.63 2.69
367 372 5.004361 AGGCAAGATGAGTCTATAGCCTA 57.996 43.478 13.74 0.00 46.63 3.93
368 373 3.855668 AGGCAAGATGAGTCTATAGCCT 58.144 45.455 11.05 11.05 45.15 4.58
369 374 4.039730 TCAAGGCAAGATGAGTCTATAGCC 59.960 45.833 0.00 0.00 42.62 3.93
370 375 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
371 376 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
372 377 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
373 378 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
374 379 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
375 380 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
376 381 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
377 382 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
378 383 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
379 384 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
380 385 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
381 386 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
382 387 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
383 388 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
384 389 5.981088 AAACATCACACATATCAAGGCAA 57.019 34.783 0.00 0.00 0.00 4.52
385 390 6.179756 AGTAAACATCACACATATCAAGGCA 58.820 36.000 0.00 0.00 0.00 4.75
386 391 6.316140 TGAGTAAACATCACACATATCAAGGC 59.684 38.462 0.00 0.00 0.00 4.35
387 392 7.848223 TGAGTAAACATCACACATATCAAGG 57.152 36.000 0.00 0.00 0.00 3.61
432 437 3.944087 AGAAAGAGAGGCATGTGGTAAC 58.056 45.455 0.00 0.00 0.00 2.50
433 438 4.041567 TGAAGAAAGAGAGGCATGTGGTAA 59.958 41.667 0.00 0.00 0.00 2.85
434 439 3.582647 TGAAGAAAGAGAGGCATGTGGTA 59.417 43.478 0.00 0.00 0.00 3.25
435 440 2.373169 TGAAGAAAGAGAGGCATGTGGT 59.627 45.455 0.00 0.00 0.00 4.16
436 441 3.063510 TGAAGAAAGAGAGGCATGTGG 57.936 47.619 0.00 0.00 0.00 4.17
437 442 5.640189 AAATGAAGAAAGAGAGGCATGTG 57.360 39.130 0.00 0.00 0.00 3.21
438 443 7.951347 AATAAATGAAGAAAGAGAGGCATGT 57.049 32.000 0.00 0.00 0.00 3.21
439 444 9.118300 AGTAATAAATGAAGAAAGAGAGGCATG 57.882 33.333 0.00 0.00 0.00 4.06
440 445 9.692325 AAGTAATAAATGAAGAAAGAGAGGCAT 57.308 29.630 0.00 0.00 0.00 4.40
441 446 8.950210 CAAGTAATAAATGAAGAAAGAGAGGCA 58.050 33.333 0.00 0.00 0.00 4.75
442 447 7.912773 GCAAGTAATAAATGAAGAAAGAGAGGC 59.087 37.037 0.00 0.00 0.00 4.70
443 448 8.401709 GGCAAGTAATAAATGAAGAAAGAGAGG 58.598 37.037 0.00 0.00 0.00 3.69
444 449 8.950210 TGGCAAGTAATAAATGAAGAAAGAGAG 58.050 33.333 0.00 0.00 0.00 3.20
445 450 8.730680 GTGGCAAGTAATAAATGAAGAAAGAGA 58.269 33.333 0.00 0.00 0.00 3.10
446 451 8.514594 TGTGGCAAGTAATAAATGAAGAAAGAG 58.485 33.333 0.00 0.00 0.00 2.85
447 452 8.402798 TGTGGCAAGTAATAAATGAAGAAAGA 57.597 30.769 0.00 0.00 0.00 2.52
448 453 9.294030 GATGTGGCAAGTAATAAATGAAGAAAG 57.706 33.333 0.00 0.00 0.00 2.62
449 454 8.801299 TGATGTGGCAAGTAATAAATGAAGAAA 58.199 29.630 0.00 0.00 0.00 2.52
450 455 8.347004 TGATGTGGCAAGTAATAAATGAAGAA 57.653 30.769 0.00 0.00 0.00 2.52
451 456 7.936496 TGATGTGGCAAGTAATAAATGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
452 457 9.590451 AAATGATGTGGCAAGTAATAAATGAAG 57.410 29.630 0.00 0.00 0.00 3.02
495 500 9.027202 TGGAGTAACATAGTTAGTAACATCACA 57.973 33.333 15.28 0.00 0.00 3.58
501 506 9.477484 CCATGATGGAGTAACATAGTTAGTAAC 57.523 37.037 5.27 4.78 40.96 2.50
502 507 8.647796 CCCATGATGGAGTAACATAGTTAGTAA 58.352 37.037 14.26 0.00 40.96 2.24
503 508 7.787904 ACCCATGATGGAGTAACATAGTTAGTA 59.212 37.037 14.26 0.00 40.96 1.82
504 509 6.615726 ACCCATGATGGAGTAACATAGTTAGT 59.384 38.462 14.26 0.00 40.96 2.24
505 510 7.067496 ACCCATGATGGAGTAACATAGTTAG 57.933 40.000 14.26 0.00 40.96 2.34
506 511 7.787904 ACTACCCATGATGGAGTAACATAGTTA 59.212 37.037 14.26 0.00 40.96 2.24
507 512 5.975988 ACCCATGATGGAGTAACATAGTT 57.024 39.130 14.26 0.00 40.96 2.24
508 513 6.143915 ACTACCCATGATGGAGTAACATAGT 58.856 40.000 14.26 6.37 40.96 2.12
509 514 6.495181 AGACTACCCATGATGGAGTAACATAG 59.505 42.308 14.26 5.79 40.96 2.23
510 515 6.382087 AGACTACCCATGATGGAGTAACATA 58.618 40.000 14.26 0.00 40.96 2.29
511 516 5.219739 AGACTACCCATGATGGAGTAACAT 58.780 41.667 14.26 2.65 40.96 2.71
512 517 4.620723 AGACTACCCATGATGGAGTAACA 58.379 43.478 14.26 0.00 40.96 2.41
513 518 6.462628 GGTTAGACTACCCATGATGGAGTAAC 60.463 46.154 14.26 10.88 40.96 2.50
514 519 5.601313 GGTTAGACTACCCATGATGGAGTAA 59.399 44.000 14.26 0.00 40.96 2.24
515 520 5.145564 GGTTAGACTACCCATGATGGAGTA 58.854 45.833 14.26 12.13 40.96 2.59
516 521 3.967987 GGTTAGACTACCCATGATGGAGT 59.032 47.826 14.26 9.42 40.96 3.85
517 522 3.005897 CGGTTAGACTACCCATGATGGAG 59.994 52.174 14.26 5.79 40.96 3.86
518 523 2.963101 CGGTTAGACTACCCATGATGGA 59.037 50.000 14.26 0.00 40.96 3.41
519 524 2.963101 TCGGTTAGACTACCCATGATGG 59.037 50.000 3.98 3.98 37.25 3.51
520 525 3.637229 ACTCGGTTAGACTACCCATGATG 59.363 47.826 0.00 0.00 34.56 3.07
521 526 3.637229 CACTCGGTTAGACTACCCATGAT 59.363 47.826 0.00 0.00 34.56 2.45
522 527 3.021695 CACTCGGTTAGACTACCCATGA 58.978 50.000 0.00 0.00 34.56 3.07
523 528 2.758979 ACACTCGGTTAGACTACCCATG 59.241 50.000 0.00 0.00 34.56 3.66
524 529 3.097342 ACACTCGGTTAGACTACCCAT 57.903 47.619 0.00 0.00 34.56 4.00
525 530 2.592102 ACACTCGGTTAGACTACCCA 57.408 50.000 0.00 0.00 34.56 4.51
526 531 2.821969 TGAACACTCGGTTAGACTACCC 59.178 50.000 0.00 0.00 40.63 3.69
527 532 3.119566 CCTGAACACTCGGTTAGACTACC 60.120 52.174 0.00 0.00 40.63 3.18
528 533 3.672781 GCCTGAACACTCGGTTAGACTAC 60.673 52.174 0.00 0.00 40.63 2.73
529 534 2.490903 GCCTGAACACTCGGTTAGACTA 59.509 50.000 0.00 0.00 40.63 2.59
530 535 1.272769 GCCTGAACACTCGGTTAGACT 59.727 52.381 0.00 0.00 40.63 3.24
531 536 1.672145 GGCCTGAACACTCGGTTAGAC 60.672 57.143 0.00 0.00 40.63 2.59
532 537 0.606604 GGCCTGAACACTCGGTTAGA 59.393 55.000 0.00 0.00 40.63 2.10
533 538 0.391263 GGGCCTGAACACTCGGTTAG 60.391 60.000 0.84 0.00 40.63 2.34
567 576 1.753930 TGGGCTGTAATGTGCATGAG 58.246 50.000 0.00 0.00 0.00 2.90
570 579 3.118665 GGAAAATGGGCTGTAATGTGCAT 60.119 43.478 0.00 0.00 0.00 3.96
572 581 2.418609 GGGAAAATGGGCTGTAATGTGC 60.419 50.000 0.00 0.00 0.00 4.57
590 599 0.112995 ACAGGCTCAGCAATTTGGGA 59.887 50.000 0.00 0.00 0.00 4.37
630 639 1.068816 GGTTGTTATTCACACGTGGGC 60.069 52.381 21.57 2.62 33.98 5.36
631 640 1.538075 GGGTTGTTATTCACACGTGGG 59.462 52.381 21.57 17.59 33.98 4.61
635 644 2.679450 TCTCGGGTTGTTATTCACACG 58.321 47.619 0.00 0.00 33.98 4.49
649 658 2.618709 GCAAGGGTGAAAATATCTCGGG 59.381 50.000 0.00 0.00 0.00 5.14
651 660 3.941483 ACAGCAAGGGTGAAAATATCTCG 59.059 43.478 2.05 0.00 34.87 4.04
665 674 4.692228 GGAGAGAGATAAGAACAGCAAGG 58.308 47.826 0.00 0.00 0.00 3.61
939 1003 3.165058 CAGATACTGCTGCTTCGGTTA 57.835 47.619 0.00 0.00 0.00 2.85
976 1066 2.183679 ACAAACCAGCACCCAAAAAGA 58.816 42.857 0.00 0.00 0.00 2.52
978 1068 3.706594 TGATACAAACCAGCACCCAAAAA 59.293 39.130 0.00 0.00 0.00 1.94
983 1073 1.750778 CCATGATACAAACCAGCACCC 59.249 52.381 0.00 0.00 0.00 4.61
986 1076 3.998913 TCTCCATGATACAAACCAGCA 57.001 42.857 0.00 0.00 0.00 4.41
997 1087 7.569111 ACCCTTACAGTTAAGTATCTCCATGAT 59.431 37.037 0.00 0.00 33.92 2.45
998 1088 6.901300 ACCCTTACAGTTAAGTATCTCCATGA 59.099 38.462 0.00 0.00 33.92 3.07
1042 1135 4.870636 TGTGGAAGGCAATGAGGATTATT 58.129 39.130 0.00 0.00 0.00 1.40
1043 1136 4.467769 CTGTGGAAGGCAATGAGGATTAT 58.532 43.478 0.00 0.00 0.00 1.28
1044 1137 3.889815 CTGTGGAAGGCAATGAGGATTA 58.110 45.455 0.00 0.00 0.00 1.75
1066 1162 4.530875 AGGATATTGAAAAGGCAGTGGAG 58.469 43.478 0.00 0.00 0.00 3.86
1071 1167 7.872113 AAGAGTTAGGATATTGAAAAGGCAG 57.128 36.000 0.00 0.00 0.00 4.85
1235 1331 6.150976 TGTGATTGACTGGGAAATGATTGTAC 59.849 38.462 0.00 0.00 0.00 2.90
1244 1340 2.441375 TGTCCTGTGATTGACTGGGAAA 59.559 45.455 0.00 0.00 42.63 3.13
1300 1397 7.934120 ACTTCATATACTCAATTGGCTAACCTC 59.066 37.037 5.42 0.00 36.63 3.85
1322 1419 1.177401 GAATGGTTGGAGGGCACTTC 58.823 55.000 0.00 0.00 0.00 3.01
1373 1471 5.177511 ATGATTACCATTCATACGAGCAACG 59.822 40.000 0.00 1.99 39.16 4.10
1414 2446 7.381408 GGTACTGAAAAAGTTTTGCTATGGAAC 59.619 37.037 7.83 0.00 40.56 3.62
1446 2478 1.312371 GGCATGGGAGTTAAAGCGCA 61.312 55.000 11.47 0.00 0.00 6.09
1449 2481 3.092301 AGAAAGGCATGGGAGTTAAAGC 58.908 45.455 0.00 0.00 0.00 3.51
1469 2502 6.420008 GCAATTTGCCAATCAATAAGCTAGAG 59.580 38.462 10.34 0.00 37.42 2.43
1486 2519 7.636259 TGTCTTTAATGTTACAGCAATTTGC 57.364 32.000 13.55 13.55 45.46 3.68
1566 2612 5.652452 ACAACTGAAAAATGATAGGCCCTAC 59.348 40.000 0.00 0.00 0.00 3.18
1646 2701 3.721087 AATGGTGTAGACTGAAAGGGG 57.279 47.619 0.00 0.00 39.30 4.79
1659 2714 8.055181 AGAATGTAATCACAGGAATAATGGTGT 58.945 33.333 0.00 0.00 38.30 4.16
1669 2724 3.519107 TCTGCCAGAATGTAATCACAGGA 59.481 43.478 0.00 0.00 38.30 3.86
1670 2725 3.877559 TCTGCCAGAATGTAATCACAGG 58.122 45.455 0.00 0.00 38.30 4.00
1671 2726 6.765036 AGTTATCTGCCAGAATGTAATCACAG 59.235 38.462 0.00 0.00 38.30 3.66
1699 2754 0.250814 AAACCAACGGGCCGTCAATA 60.251 50.000 34.23 0.00 39.99 1.90
1703 2758 2.007113 AAACAAACCAACGGGCCGTC 62.007 55.000 34.23 0.00 39.99 4.79
1717 2772 6.531948 CCGAAACCAAAATGACAGTAAAACAA 59.468 34.615 0.00 0.00 0.00 2.83
1718 2773 6.037098 CCGAAACCAAAATGACAGTAAAACA 58.963 36.000 0.00 0.00 0.00 2.83
1724 2780 4.710324 TCTACCGAAACCAAAATGACAGT 58.290 39.130 0.00 0.00 0.00 3.55
1752 2808 5.302568 AGCACTCCATCACAAATTCTTTTCA 59.697 36.000 0.00 0.00 0.00 2.69
1785 2841 5.062809 CAGAGAGTGAGCGTAAAATTCTTCC 59.937 44.000 0.00 0.00 0.00 3.46
1791 2847 4.083802 GCAAACAGAGAGTGAGCGTAAAAT 60.084 41.667 0.00 0.00 0.00 1.82
1817 2873 6.493458 ACAAAAGGGATAAGCATAAACAGTGT 59.507 34.615 0.00 0.00 0.00 3.55
1879 2973 2.991540 GACCTTGCCTGGCCAACC 60.992 66.667 17.53 0.22 0.00 3.77
1887 2981 1.352352 AGCATGTTACTGACCTTGCCT 59.648 47.619 0.00 0.00 37.19 4.75
1963 3057 4.789012 TTCTGGGAGATCAACATTTTGC 57.211 40.909 0.00 0.00 32.17 3.68
2131 3225 1.019805 GGACTTCGTAGGCAACAGGC 61.020 60.000 0.00 0.00 43.74 4.85
2157 3251 2.630158 CTCTGATGAGCACTTTCCAGG 58.370 52.381 0.00 0.00 33.12 4.45
2225 3319 4.910195 TGGCACAGATCAGAATTTAGTGT 58.090 39.130 0.00 0.00 0.00 3.55
2356 3453 7.093945 GGACTTGAGGGCATTTTCTACAAAATA 60.094 37.037 0.00 0.00 39.75 1.40
2486 3583 1.340248 TGGTAAGATTCGATCGGGAGC 59.660 52.381 16.41 7.41 0.00 4.70
2487 3584 3.508012 AGATGGTAAGATTCGATCGGGAG 59.492 47.826 16.41 0.00 0.00 4.30
2577 3674 2.290916 CAGCCTGAATGCATAGCTCAAG 59.709 50.000 0.00 0.00 32.90 3.02
2642 3739 0.035152 TCTTGCCAATCATCCGCACT 60.035 50.000 0.00 0.00 30.84 4.40
3005 4102 0.378257 CATGCCACACATAGTTCGGC 59.622 55.000 0.00 0.00 39.21 5.54
3092 4189 0.108662 CCTGCACACATAGCTCGACA 60.109 55.000 0.00 0.00 0.00 4.35
3176 4273 0.179065 CAGCCATCCGAGCTTCATCA 60.179 55.000 0.00 0.00 38.95 3.07
3255 4352 0.475044 TCCGGGTAACAAGCACCTTT 59.525 50.000 0.00 0.00 36.25 3.11
3348 4451 2.224843 TGTCTGGTCATGGTTCAGCATT 60.225 45.455 0.00 0.00 0.00 3.56
3439 4542 2.343163 CTAGGAAGACAGGCGAGCGG 62.343 65.000 0.00 0.00 0.00 5.52
3476 4579 3.305539 GCAAAGCAGTGATCAAATGGTCA 60.306 43.478 12.72 0.00 0.00 4.02
3499 4602 1.881973 TCTTCAAGTTGTGCATCTGCC 59.118 47.619 2.11 0.00 41.18 4.85
3555 4658 8.138365 TCTCACGCCATTAAACAAGATTATAC 57.862 34.615 0.00 0.00 0.00 1.47
3561 4664 3.126858 GCATCTCACGCCATTAAACAAGA 59.873 43.478 0.00 0.00 0.00 3.02
3584 4687 6.153510 CACAGTCTAGCATAGGGAAGCATATA 59.846 42.308 0.00 0.00 39.78 0.86
3585 4688 5.046735 CACAGTCTAGCATAGGGAAGCATAT 60.047 44.000 0.00 0.00 39.78 1.78
3652 4755 3.282021 CATTAAGCATGGTACCAGCAGT 58.718 45.455 27.34 20.04 0.00 4.40
3707 4810 3.507786 GCACAAATACCCGAACAAATCC 58.492 45.455 0.00 0.00 0.00 3.01
3900 5003 6.044754 TGGCTCTCTAACCATCCATTTGATAT 59.955 38.462 0.00 0.00 30.56 1.63
4046 5149 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4047 5150 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4048 5151 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4049 5152 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4050 5153 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4051 5154 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4052 5155 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4053 5156 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4054 5157 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
4055 5158 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
4056 5159 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
4057 5160 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
4058 5161 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4059 5162 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
4060 5163 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
4061 5164 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
4062 5165 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
4063 5166 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
4064 5167 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4065 5168 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4066 5169 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4067 5170 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4068 5171 6.068670 TCTAGATACATCCATTTCTCCGACA 58.931 40.000 0.00 0.00 0.00 4.35
4069 5172 6.576662 TCTAGATACATCCATTTCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
4070 5173 6.721668 ACATCTAGATACATCCATTTCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
4071 5174 6.929625 ACATCTAGATACATCCATTTCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
4124 5227 9.332502 TCCGAAAATATTTATCGAAGAAATGGA 57.667 29.630 22.84 10.67 43.58 3.41
4125 5228 9.382244 GTCCGAAAATATTTATCGAAGAAATGG 57.618 33.333 22.84 9.07 43.58 3.16
4126 5229 9.092322 CGTCCGAAAATATTTATCGAAGAAATG 57.908 33.333 22.84 11.71 43.58 2.32
4127 5230 8.280497 CCGTCCGAAAATATTTATCGAAGAAAT 58.720 33.333 22.84 11.91 43.58 2.17
4128 5231 7.492020 TCCGTCCGAAAATATTTATCGAAGAAA 59.508 33.333 22.84 0.00 43.58 2.52
4129 5232 6.979817 TCCGTCCGAAAATATTTATCGAAGAA 59.020 34.615 22.84 10.61 43.58 2.52
4130 5233 6.506147 TCCGTCCGAAAATATTTATCGAAGA 58.494 36.000 22.84 14.83 45.75 2.87
4131 5234 6.128902 CCTCCGTCCGAAAATATTTATCGAAG 60.129 42.308 22.84 16.26 38.82 3.79
4132 5235 5.693104 CCTCCGTCCGAAAATATTTATCGAA 59.307 40.000 22.84 9.58 38.82 3.71
4133 5236 5.224888 CCTCCGTCCGAAAATATTTATCGA 58.775 41.667 22.84 9.38 38.82 3.59
4134 5237 4.387862 CCCTCCGTCCGAAAATATTTATCG 59.612 45.833 18.06 18.06 36.39 2.92
4135 5238 5.544650 TCCCTCCGTCCGAAAATATTTATC 58.455 41.667 0.01 1.40 0.00 1.75
4136 5239 5.071384 ACTCCCTCCGTCCGAAAATATTTAT 59.929 40.000 0.01 0.00 0.00 1.40
4137 5240 4.406649 ACTCCCTCCGTCCGAAAATATTTA 59.593 41.667 0.01 0.00 0.00 1.40
4138 5241 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
4139 5242 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
4140 5243 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
4141 5244 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4142 5245 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
4143 5246 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4144 5247 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
4145 5248 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
4146 5249 0.962356 GTTGTACTCCCTCCGTCCGA 60.962 60.000 0.00 0.00 0.00 4.55
4147 5250 0.964358 AGTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
4148 5251 1.264295 AAGTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
4149 5252 2.036862 ACAAAGTTGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 40.16 4.79
4150 5253 2.044758 ACAAAGTTGTACTCCCTCCGT 58.955 47.619 0.00 0.00 40.16 4.69
4151 5254 2.833631 ACAAAGTTGTACTCCCTCCG 57.166 50.000 0.00 0.00 40.16 4.63
4152 5255 6.596888 GGTTTATACAAAGTTGTACTCCCTCC 59.403 42.308 6.05 2.39 45.47 4.30
4153 5256 7.163441 TGGTTTATACAAAGTTGTACTCCCTC 58.837 38.462 6.05 0.00 45.47 4.30
4154 5257 7.081857 TGGTTTATACAAAGTTGTACTCCCT 57.918 36.000 6.05 0.00 45.47 4.20
4155 5258 7.392393 ACATGGTTTATACAAAGTTGTACTCCC 59.608 37.037 6.05 5.41 45.47 4.30
4156 5259 8.331730 ACATGGTTTATACAAAGTTGTACTCC 57.668 34.615 6.05 7.23 45.47 3.85
4157 5260 8.448615 GGACATGGTTTATACAAAGTTGTACTC 58.551 37.037 6.05 0.00 45.47 2.59
4158 5261 7.392393 GGGACATGGTTTATACAAAGTTGTACT 59.608 37.037 6.05 0.17 45.47 2.73
4159 5262 7.175293 TGGGACATGGTTTATACAAAGTTGTAC 59.825 37.037 6.05 0.00 45.47 2.90
4160 5263 7.232188 TGGGACATGGTTTATACAAAGTTGTA 58.768 34.615 6.37 6.37 46.55 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.