Multiple sequence alignment - TraesCS2D01G417000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G417000 chr2D 100.000 7393 0 0 1 7393 531353766 531346374 0.000000e+00 13653.0
1 TraesCS2D01G417000 chr2D 78.571 1050 189 30 4692 5720 530260034 530259000 0.000000e+00 660.0
2 TraesCS2D01G417000 chr2D 91.781 73 5 1 3862 3934 85925894 85925965 4.720000e-17 100.0
3 TraesCS2D01G417000 chr2D 100.000 30 0 0 3848 3877 531349799 531349770 1.000000e-03 56.5
4 TraesCS2D01G417000 chr2D 100.000 30 0 0 3968 3997 531349919 531349890 1.000000e-03 56.5
5 TraesCS2D01G417000 chr2A 96.863 3347 53 13 3968 7281 675898239 675894912 0.000000e+00 5552.0
6 TraesCS2D01G417000 chr2A 94.618 1765 66 11 721 2476 675901373 675899629 0.000000e+00 2706.0
7 TraesCS2D01G417000 chr2A 97.584 1407 26 5 2558 3956 675899630 675898224 0.000000e+00 2403.0
8 TraesCS2D01G417000 chr2A 96.602 412 14 0 6982 7393 675894471 675894060 0.000000e+00 684.0
9 TraesCS2D01G417000 chr2A 78.337 1034 180 37 4692 5700 675081136 675080122 4.870000e-176 628.0
10 TraesCS2D01G417000 chr2A 99.035 311 3 0 6982 7292 675894895 675894585 6.480000e-155 558.0
11 TraesCS2D01G417000 chr2A 89.111 450 19 7 8 428 604859478 604859926 3.930000e-147 532.0
12 TraesCS2D01G417000 chr2A 98.969 97 1 0 7185 7281 675894584 675894488 2.740000e-39 174.0
13 TraesCS2D01G417000 chr2A 100.000 41 0 0 3837 3877 675898250 675898210 7.950000e-10 76.8
14 TraesCS2D01G417000 chr2A 86.885 61 5 3 4079 4139 645315696 645315639 1.720000e-06 65.8
15 TraesCS2D01G417000 chr2A 100.000 30 0 0 3968 3997 675898332 675898303 1.000000e-03 56.5
16 TraesCS2D01G417000 chr2B 97.232 3287 65 7 4020 7301 631204498 631201233 0.000000e+00 5542.0
17 TraesCS2D01G417000 chr2B 92.326 2072 70 39 429 2476 631208292 631206286 0.000000e+00 2863.0
18 TraesCS2D01G417000 chr2B 97.228 1407 31 5 2558 3956 631206287 631204881 0.000000e+00 2375.0
19 TraesCS2D01G417000 chr2B 92.986 442 17 7 1 428 121648777 121648336 3.760000e-177 632.0
20 TraesCS2D01G417000 chr2B 77.355 1051 203 29 4692 5720 630136909 630135872 2.300000e-164 590.0
21 TraesCS2D01G417000 chr2B 80.186 323 50 13 6710 7026 796786548 796786234 5.770000e-56 230.0
22 TraesCS2D01G417000 chr2B 95.833 96 4 0 3837 3932 631204907 631204812 9.930000e-34 156.0
23 TraesCS2D01G417000 chr2B 95.652 92 4 0 6054 6145 793961397 793961306 1.660000e-31 148.0
24 TraesCS2D01G417000 chr2B 100.000 30 0 0 3968 3997 631204896 631204867 1.000000e-03 56.5
25 TraesCS2D01G417000 chr2B 100.000 30 0 0 3968 3997 631204989 631204960 1.000000e-03 56.5
26 TraesCS2D01G417000 chr5A 92.213 1053 44 11 1436 2476 546803335 546804361 0.000000e+00 1456.0
27 TraesCS2D01G417000 chr5A 96.394 832 23 4 2558 3383 546804360 546805190 0.000000e+00 1363.0
28 TraesCS2D01G417000 chr5A 93.388 484 26 4 6790 7270 672832659 672833139 0.000000e+00 712.0
29 TraesCS2D01G417000 chr5A 78.979 333 48 14 6710 7026 70422882 70422556 2.700000e-49 207.0
30 TraesCS2D01G417000 chr5A 94.231 52 1 2 4089 4139 169297868 169297918 2.210000e-10 78.7
31 TraesCS2D01G417000 chr7A 93.628 565 27 6 6710 7270 731007956 731008515 0.000000e+00 835.0
32 TraesCS2D01G417000 chr7A 90.351 570 43 5 6710 7270 159421499 159420933 0.000000e+00 737.0
33 TraesCS2D01G417000 chr7A 86.667 465 18 15 8 429 48971356 48970893 6.710000e-130 475.0
34 TraesCS2D01G417000 chr5D 90.741 432 25 9 2 428 454017916 454018337 5.010000e-156 562.0
35 TraesCS2D01G417000 chr5D 88.083 386 25 9 6899 7270 478878742 478878364 8.810000e-119 438.0
36 TraesCS2D01G417000 chr5D 95.556 225 6 4 210 432 2085772 2085550 2.540000e-94 357.0
37 TraesCS2D01G417000 chr5D 96.226 212 6 2 219 428 454011406 454011195 5.490000e-91 346.0
38 TraesCS2D01G417000 chr5D 95.455 66 2 1 3873 3937 275149066 275149001 3.650000e-18 104.0
39 TraesCS2D01G417000 chr4B 89.569 441 32 5 2 429 630534825 630535264 1.400000e-151 547.0
40 TraesCS2D01G417000 chr4B 97.849 93 0 2 2472 2563 631442110 631442201 7.680000e-35 159.0
41 TraesCS2D01G417000 chr4B 96.923 65 2 0 3870 3934 106975949 106975885 7.840000e-20 110.0
42 TraesCS2D01G417000 chr4B 73.203 306 69 10 5394 5697 40222628 40222922 1.700000e-16 99.0
43 TraesCS2D01G417000 chr4A 88.182 440 30 11 7 428 577889012 577889447 8.560000e-139 505.0
44 TraesCS2D01G417000 chr4A 97.143 210 6 0 221 430 14845960 14846169 9.120000e-94 355.0
45 TraesCS2D01G417000 chr4A 94.118 102 3 3 2475 2574 615436882 615436782 1.280000e-32 152.0
46 TraesCS2D01G417000 chr3A 87.773 458 18 15 8 429 648161571 648161116 1.110000e-137 501.0
47 TraesCS2D01G417000 chr3A 79.394 330 46 14 6710 7023 682000680 682001003 5.810000e-51 213.0
48 TraesCS2D01G417000 chr3A 93.204 103 5 2 2459 2560 488042647 488042546 4.620000e-32 150.0
49 TraesCS2D01G417000 chr3A 100.000 42 0 0 4091 4132 564934766 564934807 2.210000e-10 78.7
50 TraesCS2D01G417000 chr6A 87.207 469 21 15 8 438 464978751 464979218 1.430000e-136 497.0
51 TraesCS2D01G417000 chr1A 86.192 449 40 13 7 438 582355704 582356147 4.040000e-127 466.0
52 TraesCS2D01G417000 chr1A 85.470 468 21 23 7 428 486390184 486389718 1.890000e-120 444.0
53 TraesCS2D01G417000 chr1A 95.556 45 1 1 4089 4132 330766898 330766942 3.700000e-08 71.3
54 TraesCS2D01G417000 chr5B 86.517 445 33 15 2 428 403752611 403752176 1.450000e-126 464.0
55 TraesCS2D01G417000 chr5B 97.849 93 0 2 2473 2564 82872434 82872343 7.680000e-35 159.0
56 TraesCS2D01G417000 chr5B 88.421 95 8 2 7178 7270 114642285 114642378 2.180000e-20 111.0
57 TraesCS2D01G417000 chr5B 89.041 73 7 1 569 640 368491444 368491372 1.020000e-13 89.8
58 TraesCS2D01G417000 chr1B 89.583 336 20 8 107 429 641873660 641873327 5.340000e-111 412.0
59 TraesCS2D01G417000 chr1B 96.842 95 1 2 2470 2563 149606480 149606573 2.760000e-34 158.0
60 TraesCS2D01G417000 chr1B 95.349 43 2 0 4087 4129 472472564 472472522 1.330000e-07 69.4
61 TraesCS2D01G417000 chr7D 97.630 211 4 1 219 428 587896493 587896703 1.960000e-95 361.0
62 TraesCS2D01G417000 chr7D 95.385 65 2 1 3868 3932 58784356 58784419 1.310000e-17 102.0
63 TraesCS2D01G417000 chr7D 89.041 73 7 1 7110 7182 87367301 87367372 1.020000e-13 89.8
64 TraesCS2D01G417000 chr7B 80.606 330 44 16 6710 7026 117650492 117650170 3.450000e-58 237.0
65 TraesCS2D01G417000 chr7B 96.739 92 1 2 2474 2564 201496475 201496565 1.280000e-32 152.0
66 TraesCS2D01G417000 chr7B 93.269 104 3 4 2458 2559 375201027 375201128 4.620000e-32 150.0
67 TraesCS2D01G417000 chr7B 89.062 64 5 1 4069 4132 2433643 2433582 2.210000e-10 78.7
68 TraesCS2D01G417000 chr7B 97.727 44 1 0 4089 4132 559531977 559532020 7.950000e-10 76.8
69 TraesCS2D01G417000 chr3D 90.517 116 9 2 2456 2570 76376675 76376789 1.280000e-32 152.0
70 TraesCS2D01G417000 chr3B 93.269 104 5 2 2462 2564 567473502 567473604 1.280000e-32 152.0
71 TraesCS2D01G417000 chr4D 98.361 61 1 0 3872 3932 455628560 455628500 2.820000e-19 108.0
72 TraesCS2D01G417000 chr6B 98.333 60 1 0 3873 3932 717901625 717901566 1.010000e-18 106.0
73 TraesCS2D01G417000 chr6B 100.000 30 0 0 578 607 96619056 96619085 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G417000 chr2D 531346374 531353766 7392 True 4588.666667 13653 100.000000 1 7393 3 chr2D.!!$R2 7392
1 TraesCS2D01G417000 chr2D 530259000 530260034 1034 True 660.000000 660 78.571000 4692 5720 1 chr2D.!!$R1 1028
2 TraesCS2D01G417000 chr2A 675894060 675901373 7313 True 1526.287500 5552 97.958875 721 7393 8 chr2A.!!$R3 6672
3 TraesCS2D01G417000 chr2A 675080122 675081136 1014 True 628.000000 628 78.337000 4692 5700 1 chr2A.!!$R2 1008
4 TraesCS2D01G417000 chr2B 631201233 631208292 7059 True 1841.500000 5542 97.103167 429 7301 6 chr2B.!!$R5 6872
5 TraesCS2D01G417000 chr2B 630135872 630136909 1037 True 590.000000 590 77.355000 4692 5720 1 chr2B.!!$R2 1028
6 TraesCS2D01G417000 chr5A 546803335 546805190 1855 False 1409.500000 1456 94.303500 1436 3383 2 chr5A.!!$F3 1947
7 TraesCS2D01G417000 chr7A 731007956 731008515 559 False 835.000000 835 93.628000 6710 7270 1 chr7A.!!$F1 560
8 TraesCS2D01G417000 chr7A 159420933 159421499 566 True 737.000000 737 90.351000 6710 7270 1 chr7A.!!$R2 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.032130 TCGCTGCTATCGAACCCATC 59.968 55.000 0.00 0.00 32.53 3.51 F
209 210 0.036164 TGACCGGGTCCATCAAACAG 59.964 55.000 23.81 0.00 0.00 3.16 F
214 215 0.038166 GGGTCCATCAAACAGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75 F
289 290 0.039035 GGGCCCACCTGTCATAAACA 59.961 55.000 19.95 0.00 35.85 2.83 F
1830 1862 0.179127 ATCGCTCTGTGTCGATGGTG 60.179 55.000 0.00 0.00 42.95 4.17 F
2564 2609 1.066358 GGAACGGAGGGAGTAAGTTGG 60.066 57.143 0.00 0.00 0.00 3.77 F
2568 2613 1.207329 CGGAGGGAGTAAGTTGGAAGG 59.793 57.143 0.00 0.00 0.00 3.46 F
2615 2660 1.607148 GGCTCGTGCAACTTTACCTTT 59.393 47.619 12.07 0.00 41.91 3.11 F
4301 4699 1.606903 ACGAACTCGAGAACAGACCT 58.393 50.000 21.68 0.00 43.02 3.85 F
4911 5312 0.102300 GCCACCTCGCAAACAAAACT 59.898 50.000 0.00 0.00 0.00 2.66 F
5040 5444 0.462581 ACATGTTCATCGGCGCAGAT 60.463 50.000 17.67 17.67 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1132 0.105964 TTGCTCGTAATCCATCCCCG 59.894 55.000 0.00 0.00 0.00 5.73 R
1830 1862 2.166664 ACGATGAGAAGTTCCCTGCTAC 59.833 50.000 0.00 0.00 0.00 3.58 R
1909 1941 4.294232 CATCTCGACGAAGAATAGTGCAT 58.706 43.478 0.00 0.00 0.00 3.96 R
2021 2056 4.571919 ACTCGTTTCAATCCATACCGAAA 58.428 39.130 0.00 0.00 0.00 3.46 R
2849 2900 1.002366 CCTTTGAAGACGCTGGATCG 58.998 55.000 0.00 0.00 0.00 3.69 R
3521 3572 1.661463 TCCTTGACTGCCCTGATTCT 58.339 50.000 0.00 0.00 0.00 2.40 R
4274 4672 1.891178 TCTCGAGTTCGTATTGTGCG 58.109 50.000 13.13 0.00 40.80 5.34 R
4425 4826 2.245438 GAGGAGAAAGGACCCTGCCG 62.245 65.000 0.00 0.00 0.00 5.69 R
5772 6185 0.319555 TCGGGAAGTTGCTGAAGTCG 60.320 55.000 3.01 0.00 0.00 4.18 R
6134 6553 1.068434 ACAAGCAAATTCCCACCGTTG 59.932 47.619 0.00 0.00 0.00 4.10 R
6638 7057 2.095263 CGGATGGCACTTTAAACCAGTG 60.095 50.000 0.00 2.03 43.99 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.073144 GGAAGATGAGCTGACGTACTC 57.927 52.381 0.00 5.91 0.00 2.59
21 22 2.223618 GGAAGATGAGCTGACGTACTCC 60.224 54.545 0.00 0.00 31.65 3.85
22 23 2.130272 AGATGAGCTGACGTACTCCA 57.870 50.000 0.00 0.00 31.65 3.86
23 24 2.660572 AGATGAGCTGACGTACTCCAT 58.339 47.619 0.00 1.05 31.65 3.41
24 25 2.360483 AGATGAGCTGACGTACTCCATG 59.640 50.000 0.00 0.00 31.65 3.66
25 26 0.817654 TGAGCTGACGTACTCCATGG 59.182 55.000 4.97 4.97 31.65 3.66
26 27 0.818296 GAGCTGACGTACTCCATGGT 59.182 55.000 12.58 0.00 0.00 3.55
27 28 0.532573 AGCTGACGTACTCCATGGTG 59.467 55.000 12.58 12.42 0.00 4.17
28 29 0.246635 GCTGACGTACTCCATGGTGT 59.753 55.000 22.25 22.25 0.00 4.16
29 30 1.996292 CTGACGTACTCCATGGTGTG 58.004 55.000 26.08 14.61 0.00 3.82
30 31 0.037697 TGACGTACTCCATGGTGTGC 60.038 55.000 26.08 23.48 0.00 4.57
31 32 0.246635 GACGTACTCCATGGTGTGCT 59.753 55.000 26.08 15.52 0.00 4.40
32 33 0.246635 ACGTACTCCATGGTGTGCTC 59.753 55.000 26.08 15.81 0.00 4.26
33 34 0.802222 CGTACTCCATGGTGTGCTCG 60.802 60.000 26.08 21.70 0.00 5.03
34 35 1.084370 GTACTCCATGGTGTGCTCGC 61.084 60.000 26.08 9.68 0.00 5.03
35 36 1.257750 TACTCCATGGTGTGCTCGCT 61.258 55.000 26.08 3.22 0.00 4.93
36 37 2.046988 TCCATGGTGTGCTCGCTG 60.047 61.111 12.58 0.00 0.00 5.18
37 38 3.807538 CCATGGTGTGCTCGCTGC 61.808 66.667 2.57 0.00 43.25 5.25
38 39 2.745100 CATGGTGTGCTCGCTGCT 60.745 61.111 0.00 0.00 43.37 4.24
39 40 1.448365 CATGGTGTGCTCGCTGCTA 60.448 57.895 0.00 0.00 43.37 3.49
40 41 0.812811 CATGGTGTGCTCGCTGCTAT 60.813 55.000 0.00 0.00 43.37 2.97
41 42 0.531532 ATGGTGTGCTCGCTGCTATC 60.532 55.000 0.00 0.00 43.37 2.08
42 43 2.233654 GGTGTGCTCGCTGCTATCG 61.234 63.158 0.00 0.00 43.37 2.92
43 44 1.226688 GTGTGCTCGCTGCTATCGA 60.227 57.895 0.00 0.00 43.37 3.59
44 45 0.802222 GTGTGCTCGCTGCTATCGAA 60.802 55.000 0.00 0.00 43.37 3.71
45 46 0.802222 TGTGCTCGCTGCTATCGAAC 60.802 55.000 0.00 0.00 43.37 3.95
46 47 1.226974 TGCTCGCTGCTATCGAACC 60.227 57.895 0.00 0.00 43.37 3.62
47 48 1.951631 GCTCGCTGCTATCGAACCC 60.952 63.158 0.00 0.00 38.95 4.11
48 49 1.437573 CTCGCTGCTATCGAACCCA 59.562 57.895 0.00 0.00 35.38 4.51
49 50 0.032678 CTCGCTGCTATCGAACCCAT 59.967 55.000 0.00 0.00 35.38 4.00
50 51 0.032130 TCGCTGCTATCGAACCCATC 59.968 55.000 0.00 0.00 32.53 3.51
58 59 2.202932 CGAACCCATCGCTCCAGG 60.203 66.667 0.00 0.00 45.89 4.45
59 60 2.721167 CGAACCCATCGCTCCAGGA 61.721 63.158 0.00 0.00 45.89 3.86
60 61 1.153349 GAACCCATCGCTCCAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
61 62 1.899437 GAACCCATCGCTCCAGGACA 61.899 60.000 0.00 0.00 0.00 4.02
62 63 2.185310 AACCCATCGCTCCAGGACAC 62.185 60.000 0.00 0.00 0.00 3.67
63 64 2.187946 CCATCGCTCCAGGACACC 59.812 66.667 0.00 0.00 0.00 4.16
64 65 2.659063 CCATCGCTCCAGGACACCA 61.659 63.158 0.00 0.00 0.00 4.17
65 66 1.524002 CATCGCTCCAGGACACCAT 59.476 57.895 0.00 0.00 0.00 3.55
66 67 0.812811 CATCGCTCCAGGACACCATG 60.813 60.000 0.00 0.00 0.00 3.66
67 68 1.976132 ATCGCTCCAGGACACCATGG 61.976 60.000 11.19 11.19 37.97 3.66
68 69 2.439156 GCTCCAGGACACCATGGC 60.439 66.667 13.04 0.00 36.47 4.40
69 70 2.124983 CTCCAGGACACCATGGCG 60.125 66.667 13.04 4.48 36.47 5.69
70 71 2.606213 TCCAGGACACCATGGCGA 60.606 61.111 13.04 0.00 36.47 5.54
71 72 2.124983 CCAGGACACCATGGCGAG 60.125 66.667 13.04 4.61 0.00 5.03
72 73 2.124983 CAGGACACCATGGCGAGG 60.125 66.667 13.04 1.31 0.00 4.63
73 74 4.101448 AGGACACCATGGCGAGGC 62.101 66.667 13.04 3.89 0.00 4.70
121 122 3.494336 CGGCGAGCAAAGCAGAGG 61.494 66.667 0.00 0.00 36.08 3.69
122 123 2.046892 GGCGAGCAAAGCAGAGGA 60.047 61.111 0.00 0.00 36.08 3.71
123 124 2.105466 GGCGAGCAAAGCAGAGGAG 61.105 63.158 0.00 0.00 36.08 3.69
124 125 2.105466 GCGAGCAAAGCAGAGGAGG 61.105 63.158 0.00 0.00 34.19 4.30
125 126 1.593787 CGAGCAAAGCAGAGGAGGA 59.406 57.895 0.00 0.00 0.00 3.71
126 127 0.459934 CGAGCAAAGCAGAGGAGGAG 60.460 60.000 0.00 0.00 0.00 3.69
127 128 0.612744 GAGCAAAGCAGAGGAGGAGT 59.387 55.000 0.00 0.00 0.00 3.85
128 129 0.324285 AGCAAAGCAGAGGAGGAGTG 59.676 55.000 0.00 0.00 0.00 3.51
129 130 0.322975 GCAAAGCAGAGGAGGAGTGA 59.677 55.000 0.00 0.00 0.00 3.41
130 131 1.675415 GCAAAGCAGAGGAGGAGTGAG 60.675 57.143 0.00 0.00 0.00 3.51
131 132 0.612744 AAAGCAGAGGAGGAGTGAGC 59.387 55.000 0.00 0.00 0.00 4.26
132 133 1.603236 AAGCAGAGGAGGAGTGAGCG 61.603 60.000 0.00 0.00 0.00 5.03
133 134 2.049185 GCAGAGGAGGAGTGAGCGA 61.049 63.158 0.00 0.00 0.00 4.93
134 135 2.003658 GCAGAGGAGGAGTGAGCGAG 62.004 65.000 0.00 0.00 0.00 5.03
135 136 0.393673 CAGAGGAGGAGTGAGCGAGA 60.394 60.000 0.00 0.00 0.00 4.04
136 137 0.107214 AGAGGAGGAGTGAGCGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
137 138 0.107410 GAGGAGGAGTGAGCGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
138 139 0.107214 AGGAGGAGTGAGCGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
139 140 1.724582 GGAGGAGTGAGCGAGAGAGC 61.725 65.000 0.00 0.00 37.41 4.09
140 141 1.001517 AGGAGTGAGCGAGAGAGCA 60.002 57.895 0.00 0.00 40.15 4.26
141 142 1.031571 AGGAGTGAGCGAGAGAGCAG 61.032 60.000 0.00 0.00 40.15 4.24
142 143 1.226660 GAGTGAGCGAGAGAGCAGC 60.227 63.158 0.00 0.00 40.15 5.25
143 144 2.579249 GTGAGCGAGAGAGCAGCG 60.579 66.667 0.00 0.00 40.15 5.18
144 145 2.747855 TGAGCGAGAGAGCAGCGA 60.748 61.111 0.00 0.00 40.15 4.93
145 146 2.024588 GAGCGAGAGAGCAGCGAG 59.975 66.667 0.00 0.00 40.15 5.03
146 147 2.437537 AGCGAGAGAGCAGCGAGA 60.438 61.111 0.00 0.00 40.15 4.04
147 148 2.277884 GCGAGAGAGCAGCGAGAC 60.278 66.667 0.00 0.00 37.05 3.36
148 149 3.045277 GCGAGAGAGCAGCGAGACA 62.045 63.158 0.00 0.00 37.05 3.41
149 150 1.062365 CGAGAGAGCAGCGAGACAG 59.938 63.158 0.00 0.00 0.00 3.51
150 151 1.365368 CGAGAGAGCAGCGAGACAGA 61.365 60.000 0.00 0.00 0.00 3.41
151 152 0.378257 GAGAGAGCAGCGAGACAGAG 59.622 60.000 0.00 0.00 0.00 3.35
152 153 0.322456 AGAGAGCAGCGAGACAGAGT 60.322 55.000 0.00 0.00 0.00 3.24
153 154 0.179166 GAGAGCAGCGAGACAGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
154 155 1.153862 GAGCAGCGAGACAGAGTGG 60.154 63.158 0.00 0.00 0.00 4.00
155 156 2.125753 GCAGCGAGACAGAGTGGG 60.126 66.667 0.00 0.00 0.00 4.61
156 157 2.575993 CAGCGAGACAGAGTGGGG 59.424 66.667 0.00 0.00 0.00 4.96
157 158 1.979155 CAGCGAGACAGAGTGGGGA 60.979 63.158 0.00 0.00 0.00 4.81
158 159 1.979693 AGCGAGACAGAGTGGGGAC 60.980 63.158 0.00 0.00 0.00 4.46
159 160 1.979693 GCGAGACAGAGTGGGGACT 60.980 63.158 0.00 0.00 0.00 3.85
160 161 1.886585 CGAGACAGAGTGGGGACTG 59.113 63.158 0.00 0.00 0.00 3.51
161 162 1.599606 CGAGACAGAGTGGGGACTGG 61.600 65.000 0.00 0.00 0.00 4.00
162 163 1.229336 AGACAGAGTGGGGACTGGG 60.229 63.158 0.00 0.00 0.00 4.45
163 164 2.203998 ACAGAGTGGGGACTGGGG 60.204 66.667 0.00 0.00 0.00 4.96
164 165 2.122729 CAGAGTGGGGACTGGGGA 59.877 66.667 0.00 0.00 0.00 4.81
165 166 2.122954 AGAGTGGGGACTGGGGAC 59.877 66.667 0.00 0.00 0.00 4.46
166 167 2.122954 GAGTGGGGACTGGGGACT 59.877 66.667 0.00 0.00 0.00 3.85
167 168 1.153695 AGAGTGGGGACTGGGGACTA 61.154 60.000 0.00 0.00 0.00 2.59
168 169 0.688087 GAGTGGGGACTGGGGACTAG 60.688 65.000 0.00 0.00 0.00 2.57
169 170 1.689582 GTGGGGACTGGGGACTAGG 60.690 68.421 0.00 0.00 0.00 3.02
170 171 2.040779 GGGGACTGGGGACTAGGG 60.041 72.222 0.00 0.00 0.00 3.53
171 172 2.643808 GGGGACTGGGGACTAGGGA 61.644 68.421 0.00 0.00 0.00 4.20
172 173 1.382833 GGGACTGGGGACTAGGGAC 60.383 68.421 0.00 0.00 0.00 4.46
173 174 1.390926 GGACTGGGGACTAGGGACA 59.609 63.158 0.00 0.00 0.00 4.02
174 175 0.252558 GGACTGGGGACTAGGGACAA 60.253 60.000 0.00 0.00 0.00 3.18
175 176 0.903236 GACTGGGGACTAGGGACAAC 59.097 60.000 0.00 0.00 0.00 3.32
176 177 0.192566 ACTGGGGACTAGGGACAACA 59.807 55.000 0.00 0.00 0.00 3.33
177 178 0.613777 CTGGGGACTAGGGACAACAC 59.386 60.000 0.00 0.00 0.00 3.32
178 179 0.838987 TGGGGACTAGGGACAACACC 60.839 60.000 0.00 0.00 0.00 4.16
179 180 1.595357 GGGACTAGGGACAACACCG 59.405 63.158 0.00 0.00 0.00 4.94
180 181 0.901580 GGGACTAGGGACAACACCGA 60.902 60.000 0.00 0.00 0.00 4.69
181 182 0.245813 GGACTAGGGACAACACCGAC 59.754 60.000 0.00 0.00 0.00 4.79
182 183 0.245813 GACTAGGGACAACACCGACC 59.754 60.000 0.00 0.00 0.00 4.79
183 184 1.214589 CTAGGGACAACACCGACCG 59.785 63.158 0.00 0.00 0.00 4.79
184 185 2.221906 CTAGGGACAACACCGACCGG 62.222 65.000 6.94 6.94 42.03 5.28
202 203 3.644861 GTCTTTTGACCGGGTCCAT 57.355 52.632 23.81 0.00 43.37 3.41
203 204 1.450025 GTCTTTTGACCGGGTCCATC 58.550 55.000 23.81 0.32 43.37 3.51
204 205 1.060729 TCTTTTGACCGGGTCCATCA 58.939 50.000 23.81 3.30 0.00 3.07
205 206 1.422024 TCTTTTGACCGGGTCCATCAA 59.578 47.619 23.81 9.67 0.00 2.57
206 207 2.158593 TCTTTTGACCGGGTCCATCAAA 60.159 45.455 23.81 14.96 39.84 2.69
207 208 1.611519 TTTGACCGGGTCCATCAAAC 58.388 50.000 23.81 0.00 37.41 2.93
208 209 0.474614 TTGACCGGGTCCATCAAACA 59.525 50.000 23.81 0.55 29.56 2.83
209 210 0.036164 TGACCGGGTCCATCAAACAG 59.964 55.000 23.81 0.00 0.00 3.16
210 211 0.323629 GACCGGGTCCATCAAACAGA 59.676 55.000 16.55 0.00 0.00 3.41
211 212 0.324943 ACCGGGTCCATCAAACAGAG 59.675 55.000 6.32 0.00 0.00 3.35
212 213 0.392998 CCGGGTCCATCAAACAGAGG 60.393 60.000 0.00 0.00 0.00 3.69
213 214 1.026718 CGGGTCCATCAAACAGAGGC 61.027 60.000 0.00 0.00 0.00 4.70
214 215 0.038166 GGGTCCATCAAACAGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
215 216 1.168714 GGTCCATCAAACAGAGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
216 217 1.545428 GGTCCATCAAACAGAGGCACA 60.545 52.381 0.00 0.00 0.00 4.57
217 218 1.537202 GTCCATCAAACAGAGGCACAC 59.463 52.381 0.00 0.00 0.00 3.82
218 219 1.142667 TCCATCAAACAGAGGCACACA 59.857 47.619 0.00 0.00 0.00 3.72
219 220 1.955778 CCATCAAACAGAGGCACACAA 59.044 47.619 0.00 0.00 0.00 3.33
220 221 2.287788 CCATCAAACAGAGGCACACAAC 60.288 50.000 0.00 0.00 0.00 3.32
221 222 1.013596 TCAAACAGAGGCACACAACG 58.986 50.000 0.00 0.00 0.00 4.10
222 223 0.592247 CAAACAGAGGCACACAACGC 60.592 55.000 0.00 0.00 0.00 4.84
228 229 2.356553 GGCACACAACGCCGTCTA 60.357 61.111 0.00 0.00 40.35 2.59
229 230 1.957186 GGCACACAACGCCGTCTAA 60.957 57.895 0.00 0.00 40.35 2.10
230 231 1.203313 GCACACAACGCCGTCTAAC 59.797 57.895 0.00 0.00 0.00 2.34
231 232 1.485514 CACACAACGCCGTCTAACG 59.514 57.895 0.00 0.00 42.11 3.18
240 241 2.202570 CGTCTAACGGCTGTCGGG 60.203 66.667 6.61 0.00 44.45 5.14
241 242 2.693762 CGTCTAACGGCTGTCGGGA 61.694 63.158 6.61 0.00 44.45 5.14
242 243 1.153881 GTCTAACGGCTGTCGGGAC 60.154 63.158 6.61 7.69 44.45 4.46
265 266 4.588854 ACGGTGCCACGTACGCAA 62.589 61.111 16.72 0.00 46.58 4.85
266 267 3.339464 CGGTGCCACGTACGCAAA 61.339 61.111 16.72 0.00 38.13 3.68
267 268 2.883468 CGGTGCCACGTACGCAAAA 61.883 57.895 16.72 0.00 38.13 2.44
268 269 1.355916 GGTGCCACGTACGCAAAAA 59.644 52.632 16.72 0.00 38.13 1.94
288 289 2.882170 GGGCCCACCTGTCATAAAC 58.118 57.895 19.95 0.00 35.85 2.01
289 290 0.039035 GGGCCCACCTGTCATAAACA 59.961 55.000 19.95 0.00 35.85 2.83
290 291 1.549037 GGGCCCACCTGTCATAAACAA 60.549 52.381 19.95 0.00 37.45 2.83
291 292 1.818674 GGCCCACCTGTCATAAACAAG 59.181 52.381 0.00 0.00 37.45 3.16
292 293 1.202348 GCCCACCTGTCATAAACAAGC 59.798 52.381 0.00 0.00 37.45 4.01
293 294 2.795329 CCCACCTGTCATAAACAAGCT 58.205 47.619 0.00 0.00 37.45 3.74
294 295 3.157087 CCCACCTGTCATAAACAAGCTT 58.843 45.455 0.00 0.00 37.45 3.74
295 296 4.331968 CCCACCTGTCATAAACAAGCTTA 58.668 43.478 0.00 0.00 37.45 3.09
296 297 4.764823 CCCACCTGTCATAAACAAGCTTAA 59.235 41.667 0.00 0.00 37.45 1.85
297 298 5.335661 CCCACCTGTCATAAACAAGCTTAAC 60.336 44.000 0.00 0.00 37.45 2.01
298 299 5.473504 CCACCTGTCATAAACAAGCTTAACT 59.526 40.000 0.00 0.00 37.45 2.24
299 300 6.373779 CACCTGTCATAAACAAGCTTAACTG 58.626 40.000 0.00 0.00 37.45 3.16
300 301 6.204688 CACCTGTCATAAACAAGCTTAACTGA 59.795 38.462 0.00 0.00 37.45 3.41
301 302 6.428159 ACCTGTCATAAACAAGCTTAACTGAG 59.572 38.462 0.00 0.00 37.45 3.35
302 303 6.241207 TGTCATAAACAAGCTTAACTGAGC 57.759 37.500 0.00 0.00 36.53 4.26
303 304 5.181245 TGTCATAAACAAGCTTAACTGAGCC 59.819 40.000 0.00 0.00 36.77 4.70
304 305 4.700213 TCATAAACAAGCTTAACTGAGCCC 59.300 41.667 0.00 0.00 43.74 5.19
305 306 1.523758 AACAAGCTTAACTGAGCCCG 58.476 50.000 0.00 0.00 43.74 6.13
306 307 0.685097 ACAAGCTTAACTGAGCCCGA 59.315 50.000 0.00 0.00 43.74 5.14
307 308 1.279271 ACAAGCTTAACTGAGCCCGAT 59.721 47.619 0.00 0.00 43.74 4.18
308 309 1.936547 CAAGCTTAACTGAGCCCGATC 59.063 52.381 0.00 0.00 43.74 3.69
309 310 0.466124 AGCTTAACTGAGCCCGATCC 59.534 55.000 0.00 0.00 43.74 3.36
310 311 0.876342 GCTTAACTGAGCCCGATCCG 60.876 60.000 0.00 0.00 36.66 4.18
311 312 0.876342 CTTAACTGAGCCCGATCCGC 60.876 60.000 0.00 0.00 0.00 5.54
312 313 2.306255 TTAACTGAGCCCGATCCGCC 62.306 60.000 0.00 0.00 0.00 6.13
316 317 4.726351 GAGCCCGATCCGCCGATC 62.726 72.222 5.09 5.09 41.43 3.69
319 320 3.606662 CCCGATCCGCCGATCAGT 61.607 66.667 14.20 0.00 44.55 3.41
320 321 2.355126 CCGATCCGCCGATCAGTG 60.355 66.667 14.20 0.00 44.55 3.66
321 322 3.032609 CGATCCGCCGATCAGTGC 61.033 66.667 14.20 0.00 44.55 4.40
322 323 2.419198 GATCCGCCGATCAGTGCT 59.581 61.111 9.80 0.00 43.87 4.40
323 324 1.227380 GATCCGCCGATCAGTGCTT 60.227 57.895 9.80 0.00 43.87 3.91
324 325 0.811616 GATCCGCCGATCAGTGCTTT 60.812 55.000 9.80 0.00 43.87 3.51
325 326 0.811616 ATCCGCCGATCAGTGCTTTC 60.812 55.000 0.00 0.00 0.00 2.62
326 327 1.448540 CCGCCGATCAGTGCTTTCT 60.449 57.895 0.00 0.00 0.00 2.52
327 328 1.699656 CCGCCGATCAGTGCTTTCTG 61.700 60.000 0.00 0.00 36.85 3.02
328 329 1.427020 GCCGATCAGTGCTTTCTGC 59.573 57.895 0.00 0.00 43.25 4.26
342 343 4.794169 GCTTTCTGCAAAAAGATTACCGA 58.206 39.130 16.70 0.00 42.31 4.69
343 344 5.219633 GCTTTCTGCAAAAAGATTACCGAA 58.780 37.500 16.70 0.00 42.31 4.30
344 345 5.343325 GCTTTCTGCAAAAAGATTACCGAAG 59.657 40.000 16.70 0.00 42.31 3.79
345 346 6.627395 TTTCTGCAAAAAGATTACCGAAGA 57.373 33.333 0.00 0.00 0.00 2.87
346 347 5.607119 TCTGCAAAAAGATTACCGAAGAC 57.393 39.130 0.00 0.00 0.00 3.01
347 348 5.060506 TCTGCAAAAAGATTACCGAAGACA 58.939 37.500 0.00 0.00 0.00 3.41
348 349 5.705441 TCTGCAAAAAGATTACCGAAGACAT 59.295 36.000 0.00 0.00 0.00 3.06
349 350 5.698832 TGCAAAAAGATTACCGAAGACATG 58.301 37.500 0.00 0.00 0.00 3.21
350 351 5.095490 GCAAAAAGATTACCGAAGACATGG 58.905 41.667 0.00 0.00 0.00 3.66
351 352 5.335661 GCAAAAAGATTACCGAAGACATGGT 60.336 40.000 0.00 0.00 42.34 3.55
352 353 5.880054 AAAAGATTACCGAAGACATGGTG 57.120 39.130 0.00 0.00 39.30 4.17
353 354 4.553330 AAGATTACCGAAGACATGGTGT 57.447 40.909 0.00 0.00 39.30 4.16
354 355 4.553330 AGATTACCGAAGACATGGTGTT 57.447 40.909 0.00 0.00 39.30 3.32
355 356 4.906618 AGATTACCGAAGACATGGTGTTT 58.093 39.130 0.00 0.00 39.30 2.83
356 357 5.313712 AGATTACCGAAGACATGGTGTTTT 58.686 37.500 0.00 0.00 39.30 2.43
357 358 5.411669 AGATTACCGAAGACATGGTGTTTTC 59.588 40.000 0.00 3.94 37.90 2.29
358 359 3.208747 ACCGAAGACATGGTGTTTTCT 57.791 42.857 10.39 0.00 38.77 2.52
359 360 2.878406 ACCGAAGACATGGTGTTTTCTG 59.122 45.455 10.39 7.27 38.77 3.02
360 361 2.350772 CCGAAGACATGGTGTTTTCTGC 60.351 50.000 10.39 0.00 38.77 4.26
361 362 2.290367 CGAAGACATGGTGTTTTCTGCA 59.710 45.455 10.39 0.00 38.77 4.41
362 363 3.243035 CGAAGACATGGTGTTTTCTGCAA 60.243 43.478 10.39 0.00 38.77 4.08
363 364 4.681744 GAAGACATGGTGTTTTCTGCAAA 58.318 39.130 0.00 0.00 38.15 3.68
364 365 4.734398 AGACATGGTGTTTTCTGCAAAA 57.266 36.364 0.00 0.00 0.00 2.44
365 366 5.083533 AGACATGGTGTTTTCTGCAAAAA 57.916 34.783 0.00 0.00 33.17 1.94
387 388 7.631915 AAAAATGTATTGTAGTGGTTTTCGC 57.368 32.000 0.00 0.00 0.00 4.70
388 389 5.950758 AATGTATTGTAGTGGTTTTCGCA 57.049 34.783 0.00 0.00 0.00 5.10
389 390 5.950758 ATGTATTGTAGTGGTTTTCGCAA 57.049 34.783 0.00 0.00 0.00 4.85
390 391 5.752892 TGTATTGTAGTGGTTTTCGCAAA 57.247 34.783 0.00 0.00 0.00 3.68
391 392 5.512473 TGTATTGTAGTGGTTTTCGCAAAC 58.488 37.500 1.76 1.76 41.57 2.93
407 408 2.825205 CAAACCTTGCCTTCAAAGTGG 58.175 47.619 0.00 0.00 28.05 4.00
408 409 2.159179 AACCTTGCCTTCAAAGTGGT 57.841 45.000 0.00 0.00 31.83 4.16
409 410 1.402787 ACCTTGCCTTCAAAGTGGTG 58.597 50.000 0.00 0.00 30.07 4.17
410 411 0.675633 CCTTGCCTTCAAAGTGGTGG 59.324 55.000 0.00 0.00 0.00 4.61
411 412 1.402787 CTTGCCTTCAAAGTGGTGGT 58.597 50.000 0.00 0.00 0.00 4.16
412 413 1.756538 CTTGCCTTCAAAGTGGTGGTT 59.243 47.619 0.00 0.00 0.00 3.67
413 414 1.859302 TGCCTTCAAAGTGGTGGTTT 58.141 45.000 0.00 0.00 0.00 3.27
414 415 2.183679 TGCCTTCAAAGTGGTGGTTTT 58.816 42.857 0.00 0.00 0.00 2.43
415 416 2.093764 TGCCTTCAAAGTGGTGGTTTTG 60.094 45.455 0.00 0.00 36.00 2.44
416 417 2.093711 GCCTTCAAAGTGGTGGTTTTGT 60.094 45.455 0.00 0.00 36.09 2.83
417 418 3.520569 CCTTCAAAGTGGTGGTTTTGTG 58.479 45.455 0.00 0.00 36.09 3.33
418 419 2.663826 TCAAAGTGGTGGTTTTGTGC 57.336 45.000 0.00 0.00 36.09 4.57
419 420 1.895798 TCAAAGTGGTGGTTTTGTGCA 59.104 42.857 0.00 0.00 36.09 4.57
420 421 2.300152 TCAAAGTGGTGGTTTTGTGCAA 59.700 40.909 0.00 0.00 36.09 4.08
421 422 3.055530 TCAAAGTGGTGGTTTTGTGCAAT 60.056 39.130 0.00 0.00 36.09 3.56
422 423 3.625649 AAGTGGTGGTTTTGTGCAATT 57.374 38.095 0.00 0.00 0.00 2.32
423 424 3.625649 AGTGGTGGTTTTGTGCAATTT 57.374 38.095 0.00 0.00 0.00 1.82
424 425 4.744795 AGTGGTGGTTTTGTGCAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
425 426 4.438148 AGTGGTGGTTTTGTGCAATTTAC 58.562 39.130 0.00 0.00 0.00 2.01
426 427 4.161377 AGTGGTGGTTTTGTGCAATTTACT 59.839 37.500 0.00 0.00 0.00 2.24
427 428 4.506288 GTGGTGGTTTTGTGCAATTTACTC 59.494 41.667 0.00 0.00 0.00 2.59
647 656 1.419012 TGGAGATGCTCTAGCCATTGG 59.581 52.381 0.00 0.00 41.18 3.16
649 658 2.105477 GGAGATGCTCTAGCCATTGGAA 59.895 50.000 6.95 0.00 41.18 3.53
666 675 5.666969 TTGGAAATGTTGAGACGTGTTAG 57.333 39.130 0.00 0.00 0.00 2.34
763 772 4.330894 TGCAAAAGCGAGATCTAACATCTG 59.669 41.667 0.00 0.00 0.00 2.90
780 789 4.453819 ACATCTGAGCGGAAAGAAAAAGAG 59.546 41.667 0.00 0.00 0.00 2.85
861 870 0.445436 CGGCTGACTTGCATTGACTC 59.555 55.000 0.00 0.00 34.04 3.36
864 873 3.273434 GGCTGACTTGCATTGACTCATA 58.727 45.455 0.00 0.00 34.04 2.15
881 890 4.287845 ACTCATATTTCCGGTTATACCCCC 59.712 45.833 0.00 0.00 33.75 5.40
942 953 0.675837 GAAACCGCCAGGGGTAGAAC 60.676 60.000 6.84 0.00 40.11 3.01
1099 1110 6.613271 TCCTTAGCCATTTGATCTAGAGACTT 59.387 38.462 0.00 0.00 0.00 3.01
1117 1128 1.463444 CTTTCTCGCCGTTAGGGTTTG 59.537 52.381 0.00 0.00 38.44 2.93
1121 1132 4.111016 GCCGTTAGGGTTTGGCGC 62.111 66.667 0.00 0.00 37.81 6.53
1669 1699 1.449778 GGTAAGCGCTTCCCCTGTC 60.450 63.158 28.82 9.13 0.00 3.51
1746 1777 6.500589 TCCTCAAGTAATCTAGGGATTTGG 57.499 41.667 0.00 0.00 41.75 3.28
1830 1862 0.179127 ATCGCTCTGTGTCGATGGTG 60.179 55.000 0.00 0.00 42.95 4.17
1909 1941 3.730215 TGTTTGGCCCTAGCAGATTTA 57.270 42.857 0.00 0.00 42.56 1.40
2013 2048 6.642950 CCTCGAGTTAGCTTAGGTTTCATATG 59.357 42.308 12.31 0.00 0.00 1.78
2040 2076 5.037015 TGTTTTCGGTATGGATTGAAACG 57.963 39.130 0.00 0.00 30.66 3.60
2163 2205 8.608185 TGGAGGAAGCATTTAATTTTAGGATT 57.392 30.769 0.00 0.00 0.00 3.01
2413 2457 7.504924 TCAGACACTGTTTAATTTTACCCAG 57.495 36.000 0.00 0.00 32.61 4.45
2456 2501 9.282569 CAATTTTTCCTATGTTGATTTGGGAAA 57.717 29.630 0.00 0.00 39.89 3.13
2482 2527 9.543783 AAAAATCGTATTAGAACATACTCCCTC 57.456 33.333 0.00 0.00 0.00 4.30
2483 2528 6.837471 ATCGTATTAGAACATACTCCCTCC 57.163 41.667 0.00 0.00 0.00 4.30
2484 2529 4.758674 TCGTATTAGAACATACTCCCTCCG 59.241 45.833 0.00 0.00 0.00 4.63
2485 2530 4.518211 CGTATTAGAACATACTCCCTCCGT 59.482 45.833 0.00 0.00 0.00 4.69
2486 2531 5.009410 CGTATTAGAACATACTCCCTCCGTT 59.991 44.000 0.00 0.00 0.00 4.44
2487 2532 4.996788 TTAGAACATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 36.95 3.95
2488 2533 2.108970 AGAACATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 37.31 3.62
2489 2534 1.829222 GAACATACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 31.82 3.53
2490 2535 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2491 2536 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2492 2537 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2493 2538 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2494 2539 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2495 2540 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2496 2541 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2497 2542 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2498 2543 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2499 2544 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2500 2545 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2501 2546 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2502 2547 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2503 2548 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2504 2549 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2505 2550 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2506 2551 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2507 2552 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2508 2553 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2509 2554 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2510 2555 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2511 2556 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2512 2557 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2513 2558 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2546 2591 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
2547 2592 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2548 2593 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2549 2594 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2550 2595 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2551 2596 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2552 2597 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2553 2598 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2554 2599 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2555 2600 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2556 2601 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2557 2602 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2558 2603 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2559 2604 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
2560 2605 3.412237 TTTTGGAACGGAGGGAGTAAG 57.588 47.619 0.00 0.00 0.00 2.34
2561 2606 2.019807 TTGGAACGGAGGGAGTAAGT 57.980 50.000 0.00 0.00 0.00 2.24
2562 2607 2.019807 TGGAACGGAGGGAGTAAGTT 57.980 50.000 0.00 0.00 0.00 2.66
2563 2608 1.621814 TGGAACGGAGGGAGTAAGTTG 59.378 52.381 0.00 0.00 0.00 3.16
2564 2609 1.066358 GGAACGGAGGGAGTAAGTTGG 60.066 57.143 0.00 0.00 0.00 3.77
2568 2613 1.207329 CGGAGGGAGTAAGTTGGAAGG 59.793 57.143 0.00 0.00 0.00 3.46
2606 2651 1.804151 TGAGTATTTGGCTCGTGCAAC 59.196 47.619 12.07 1.53 41.91 4.17
2615 2660 1.607148 GGCTCGTGCAACTTTACCTTT 59.393 47.619 12.07 0.00 41.91 3.11
2667 2718 2.157738 GCATCAGCTCCAAAGAAGTGT 58.842 47.619 0.00 0.00 37.91 3.55
2996 3047 6.481954 AAGAGAAACCTATTTACTGTTGCG 57.518 37.500 0.00 0.00 0.00 4.85
3464 3515 2.289444 CCACCGGAAGACTAAGCAGAAA 60.289 50.000 9.46 0.00 0.00 2.52
3521 3572 5.649395 CAGCCAGATCACCTTTTTAGATTCA 59.351 40.000 0.00 0.00 0.00 2.57
3632 3683 1.683385 AGCAAGAGCAAAGACAAACCC 59.317 47.619 0.00 0.00 45.49 4.11
3680 3731 3.067833 GCTTGTTGAAGGACAGAGGTAC 58.932 50.000 0.00 0.00 0.00 3.34
3941 3993 8.911918 AGTGTAGTGTCAAAAATGTATAACCA 57.088 30.769 0.00 0.00 0.00 3.67
3942 3994 9.515226 AGTGTAGTGTCAAAAATGTATAACCAT 57.485 29.630 0.00 0.00 0.00 3.55
3943 3995 9.769093 GTGTAGTGTCAAAAATGTATAACCATC 57.231 33.333 0.00 0.00 0.00 3.51
3944 3996 9.733556 TGTAGTGTCAAAAATGTATAACCATCT 57.266 29.630 0.00 0.00 0.00 2.90
3945 3997 9.988350 GTAGTGTCAAAAATGTATAACCATCTG 57.012 33.333 0.00 0.00 0.00 2.90
3946 3998 8.635765 AGTGTCAAAAATGTATAACCATCTGT 57.364 30.769 0.00 0.00 0.00 3.41
3947 3999 9.077885 AGTGTCAAAAATGTATAACCATCTGTT 57.922 29.630 0.00 0.00 41.11 3.16
4274 4672 8.856490 TTCTCTGTCTTATTTCTTTTGCAAAC 57.144 30.769 12.39 0.00 0.00 2.93
4292 4690 1.614385 ACGCACAATACGAACTCGAG 58.386 50.000 11.84 11.84 43.02 4.04
4299 4697 4.321217 CACAATACGAACTCGAGAACAGAC 59.679 45.833 21.68 2.66 43.02 3.51
4301 4699 1.606903 ACGAACTCGAGAACAGACCT 58.393 50.000 21.68 0.00 43.02 3.85
4395 4796 6.721318 AGAAATAGCTCAACAGTTTGGGATA 58.279 36.000 0.00 0.00 38.44 2.59
4425 4826 3.942829 TGTGAAGATGATGGAAGTCACC 58.057 45.455 0.00 0.00 35.59 4.02
4545 4946 2.643304 GGGGAAGAAACTGGTAGAAGGT 59.357 50.000 0.00 0.00 0.00 3.50
4689 5090 2.745821 TCAGATGAACAAGACAGCATGC 59.254 45.455 10.51 10.51 42.53 4.06
4734 5135 2.433604 AGTGCTATCAGATCCACACCAG 59.566 50.000 13.70 0.00 0.00 4.00
4735 5136 2.169352 GTGCTATCAGATCCACACCAGT 59.831 50.000 8.54 0.00 0.00 4.00
4854 5255 3.070734 ACAAGACACTGAAGCTGATCTGT 59.929 43.478 1.27 0.00 32.46 3.41
4911 5312 0.102300 GCCACCTCGCAAACAAAACT 59.898 50.000 0.00 0.00 0.00 2.66
5037 5441 1.006086 CTTACATGTTCATCGGCGCA 58.994 50.000 10.83 0.00 0.00 6.09
5040 5444 0.462581 ACATGTTCATCGGCGCAGAT 60.463 50.000 17.67 17.67 0.00 2.90
5043 5447 1.083806 TGTTCATCGGCGCAGATGTC 61.084 55.000 37.50 31.13 45.96 3.06
5640 6053 1.221840 CTGCACCAAGCCCGTATCT 59.778 57.895 0.00 0.00 44.83 1.98
5754 6167 3.729489 TCGTCCTCGGCCTCCTCT 61.729 66.667 0.00 0.00 37.69 3.69
6191 6610 7.844493 ATGGTGTAATTATTTGCTCCATCAT 57.156 32.000 13.10 0.00 43.77 2.45
6280 6699 1.715993 GCCGAACAAGTCTCTTCTCC 58.284 55.000 0.00 0.00 0.00 3.71
6626 7045 2.358615 GCCTGCACACGACCATCA 60.359 61.111 0.00 0.00 0.00 3.07
6627 7046 2.680913 GCCTGCACACGACCATCAC 61.681 63.158 0.00 0.00 0.00 3.06
6628 7047 1.004560 CCTGCACACGACCATCACT 60.005 57.895 0.00 0.00 0.00 3.41
6629 7048 1.293963 CCTGCACACGACCATCACTG 61.294 60.000 0.00 0.00 0.00 3.66
6700 7119 4.556699 CGACTCAAAATTCCAAGGACCAAC 60.557 45.833 0.00 0.00 0.00 3.77
7103 7868 6.605594 AGTCTGTTAGAGGGTATTCTCTTCAG 59.394 42.308 14.38 14.38 43.26 3.02
7294 8489 3.278987 TGGGAACAGGGAAGGTAACTA 57.721 47.619 0.00 0.00 41.42 2.24
7310 8505 1.668419 ACTAAACCAGCGATGGATGC 58.332 50.000 29.47 0.00 0.00 3.91
7319 8514 1.962822 CGATGGATGCATGGACGGG 60.963 63.158 2.46 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.223618 GGAGTACGTCAGCTCATCTTCC 60.224 54.545 14.00 0.00 33.66 3.46
1 2 2.423892 TGGAGTACGTCAGCTCATCTTC 59.576 50.000 14.00 1.18 33.66 2.87
2 3 2.447443 TGGAGTACGTCAGCTCATCTT 58.553 47.619 14.00 0.00 33.66 2.40
3 4 2.130272 TGGAGTACGTCAGCTCATCT 57.870 50.000 14.00 0.00 33.66 2.90
4 5 2.544694 CCATGGAGTACGTCAGCTCATC 60.545 54.545 5.56 2.25 33.66 2.92
5 6 1.410517 CCATGGAGTACGTCAGCTCAT 59.589 52.381 5.56 2.43 33.66 2.90
6 7 0.817654 CCATGGAGTACGTCAGCTCA 59.182 55.000 5.56 0.39 33.66 4.26
7 8 0.818296 ACCATGGAGTACGTCAGCTC 59.182 55.000 21.47 0.00 0.00 4.09
8 9 0.532573 CACCATGGAGTACGTCAGCT 59.467 55.000 21.47 0.00 0.00 4.24
9 10 0.246635 ACACCATGGAGTACGTCAGC 59.753 55.000 21.47 0.00 0.00 4.26
10 11 1.996292 CACACCATGGAGTACGTCAG 58.004 55.000 21.47 0.00 0.00 3.51
11 12 0.037697 GCACACCATGGAGTACGTCA 60.038 55.000 21.47 0.00 0.00 4.35
12 13 0.246635 AGCACACCATGGAGTACGTC 59.753 55.000 21.47 6.83 0.00 4.34
13 14 0.246635 GAGCACACCATGGAGTACGT 59.753 55.000 21.47 4.25 0.00 3.57
14 15 0.802222 CGAGCACACCATGGAGTACG 60.802 60.000 21.47 17.93 0.00 3.67
15 16 1.084370 GCGAGCACACCATGGAGTAC 61.084 60.000 21.47 12.05 0.00 2.73
16 17 1.218047 GCGAGCACACCATGGAGTA 59.782 57.895 21.47 0.00 0.00 2.59
17 18 2.046892 GCGAGCACACCATGGAGT 60.047 61.111 21.47 15.07 0.00 3.85
18 19 2.104859 CAGCGAGCACACCATGGAG 61.105 63.158 21.47 14.24 0.00 3.86
19 20 2.046988 CAGCGAGCACACCATGGA 60.047 61.111 21.47 0.00 0.00 3.41
20 21 3.807538 GCAGCGAGCACACCATGG 61.808 66.667 11.19 11.19 44.79 3.66
29 30 1.951631 GGGTTCGATAGCAGCGAGC 60.952 63.158 0.00 0.00 46.19 5.03
30 31 0.032678 ATGGGTTCGATAGCAGCGAG 59.967 55.000 0.00 0.00 39.14 5.03
31 32 0.032130 GATGGGTTCGATAGCAGCGA 59.968 55.000 0.00 0.00 35.76 4.93
32 33 2.522060 GATGGGTTCGATAGCAGCG 58.478 57.895 0.00 0.00 0.00 5.18
42 43 1.153349 GTCCTGGAGCGATGGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
43 44 1.918293 TGTCCTGGAGCGATGGGTT 60.918 57.895 0.00 0.00 0.00 4.11
44 45 2.284625 TGTCCTGGAGCGATGGGT 60.285 61.111 0.00 0.00 0.00 4.51
45 46 2.187946 GTGTCCTGGAGCGATGGG 59.812 66.667 0.00 0.00 0.00 4.00
46 47 1.976132 ATGGTGTCCTGGAGCGATGG 61.976 60.000 0.00 0.00 0.00 3.51
47 48 0.812811 CATGGTGTCCTGGAGCGATG 60.813 60.000 0.00 2.83 0.00 3.84
48 49 1.524002 CATGGTGTCCTGGAGCGAT 59.476 57.895 0.00 0.00 0.00 4.58
49 50 2.659063 CCATGGTGTCCTGGAGCGA 61.659 63.158 2.57 0.00 34.24 4.93
50 51 2.124983 CCATGGTGTCCTGGAGCG 60.125 66.667 2.57 0.00 34.24 5.03
51 52 2.439156 GCCATGGTGTCCTGGAGC 60.439 66.667 14.67 0.00 34.24 4.70
52 53 2.124983 CGCCATGGTGTCCTGGAG 60.125 66.667 17.59 0.00 34.24 3.86
53 54 2.606213 TCGCCATGGTGTCCTGGA 60.606 61.111 24.28 1.29 34.24 3.86
54 55 2.124983 CTCGCCATGGTGTCCTGG 60.125 66.667 24.28 7.68 35.53 4.45
55 56 2.124983 CCTCGCCATGGTGTCCTG 60.125 66.667 24.28 12.83 0.00 3.86
56 57 4.101448 GCCTCGCCATGGTGTCCT 62.101 66.667 24.28 0.00 0.00 3.85
103 104 4.157958 CTCTGCTTTGCTCGCCGC 62.158 66.667 0.00 0.00 39.77 6.53
104 105 3.494336 CCTCTGCTTTGCTCGCCG 61.494 66.667 0.00 0.00 0.00 6.46
105 106 2.046892 TCCTCTGCTTTGCTCGCC 60.047 61.111 0.00 0.00 0.00 5.54
106 107 2.105466 CCTCCTCTGCTTTGCTCGC 61.105 63.158 0.00 0.00 0.00 5.03
107 108 0.459934 CTCCTCCTCTGCTTTGCTCG 60.460 60.000 0.00 0.00 0.00 5.03
108 109 0.612744 ACTCCTCCTCTGCTTTGCTC 59.387 55.000 0.00 0.00 0.00 4.26
109 110 0.324285 CACTCCTCCTCTGCTTTGCT 59.676 55.000 0.00 0.00 0.00 3.91
110 111 0.322975 TCACTCCTCCTCTGCTTTGC 59.677 55.000 0.00 0.00 0.00 3.68
111 112 1.675415 GCTCACTCCTCCTCTGCTTTG 60.675 57.143 0.00 0.00 0.00 2.77
112 113 0.612744 GCTCACTCCTCCTCTGCTTT 59.387 55.000 0.00 0.00 0.00 3.51
113 114 1.603236 CGCTCACTCCTCCTCTGCTT 61.603 60.000 0.00 0.00 0.00 3.91
114 115 2.051518 CGCTCACTCCTCCTCTGCT 61.052 63.158 0.00 0.00 0.00 4.24
115 116 2.003658 CTCGCTCACTCCTCCTCTGC 62.004 65.000 0.00 0.00 0.00 4.26
116 117 0.393673 TCTCGCTCACTCCTCCTCTG 60.394 60.000 0.00 0.00 0.00 3.35
117 118 0.107214 CTCTCGCTCACTCCTCCTCT 60.107 60.000 0.00 0.00 0.00 3.69
118 119 0.107410 TCTCTCGCTCACTCCTCCTC 60.107 60.000 0.00 0.00 0.00 3.71
119 120 0.107214 CTCTCTCGCTCACTCCTCCT 60.107 60.000 0.00 0.00 0.00 3.69
120 121 1.724582 GCTCTCTCGCTCACTCCTCC 61.725 65.000 0.00 0.00 0.00 4.30
121 122 1.029408 TGCTCTCTCGCTCACTCCTC 61.029 60.000 0.00 0.00 0.00 3.71
122 123 1.001517 TGCTCTCTCGCTCACTCCT 60.002 57.895 0.00 0.00 0.00 3.69
123 124 1.433064 CTGCTCTCTCGCTCACTCC 59.567 63.158 0.00 0.00 0.00 3.85
124 125 1.226660 GCTGCTCTCTCGCTCACTC 60.227 63.158 0.00 0.00 0.00 3.51
125 126 2.884367 GCTGCTCTCTCGCTCACT 59.116 61.111 0.00 0.00 0.00 3.41
126 127 2.579249 CGCTGCTCTCTCGCTCAC 60.579 66.667 0.00 0.00 0.00 3.51
127 128 2.747855 TCGCTGCTCTCTCGCTCA 60.748 61.111 0.00 0.00 0.00 4.26
128 129 2.024588 CTCGCTGCTCTCTCGCTC 59.975 66.667 0.00 0.00 0.00 5.03
129 130 2.437537 TCTCGCTGCTCTCTCGCT 60.438 61.111 0.00 0.00 0.00 4.93
130 131 2.277884 GTCTCGCTGCTCTCTCGC 60.278 66.667 0.00 0.00 0.00 5.03
131 132 1.062365 CTGTCTCGCTGCTCTCTCG 59.938 63.158 0.00 0.00 0.00 4.04
132 133 0.378257 CTCTGTCTCGCTGCTCTCTC 59.622 60.000 0.00 0.00 0.00 3.20
133 134 0.322456 ACTCTGTCTCGCTGCTCTCT 60.322 55.000 0.00 0.00 0.00 3.10
134 135 0.179166 CACTCTGTCTCGCTGCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
135 136 1.594194 CCACTCTGTCTCGCTGCTCT 61.594 60.000 0.00 0.00 0.00 4.09
136 137 1.153862 CCACTCTGTCTCGCTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
137 138 2.644212 CCCACTCTGTCTCGCTGCT 61.644 63.158 0.00 0.00 0.00 4.24
138 139 2.125753 CCCACTCTGTCTCGCTGC 60.126 66.667 0.00 0.00 0.00 5.25
139 140 1.979155 TCCCCACTCTGTCTCGCTG 60.979 63.158 0.00 0.00 0.00 5.18
140 141 1.979693 GTCCCCACTCTGTCTCGCT 60.980 63.158 0.00 0.00 0.00 4.93
141 142 1.979693 AGTCCCCACTCTGTCTCGC 60.980 63.158 0.00 0.00 0.00 5.03
142 143 1.599606 CCAGTCCCCACTCTGTCTCG 61.600 65.000 0.00 0.00 0.00 4.04
143 144 1.261238 CCCAGTCCCCACTCTGTCTC 61.261 65.000 0.00 0.00 0.00 3.36
144 145 1.229336 CCCAGTCCCCACTCTGTCT 60.229 63.158 0.00 0.00 0.00 3.41
145 146 2.294078 CCCCAGTCCCCACTCTGTC 61.294 68.421 0.00 0.00 0.00 3.51
146 147 2.203998 CCCCAGTCCCCACTCTGT 60.204 66.667 0.00 0.00 0.00 3.41
147 148 2.122729 TCCCCAGTCCCCACTCTG 59.877 66.667 0.00 0.00 0.00 3.35
148 149 1.153695 TAGTCCCCAGTCCCCACTCT 61.154 60.000 0.00 0.00 0.00 3.24
149 150 0.688087 CTAGTCCCCAGTCCCCACTC 60.688 65.000 0.00 0.00 0.00 3.51
150 151 1.392534 CTAGTCCCCAGTCCCCACT 59.607 63.158 0.00 0.00 0.00 4.00
151 152 1.689582 CCTAGTCCCCAGTCCCCAC 60.690 68.421 0.00 0.00 0.00 4.61
152 153 2.784984 CCTAGTCCCCAGTCCCCA 59.215 66.667 0.00 0.00 0.00 4.96
153 154 2.040779 CCCTAGTCCCCAGTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
154 155 1.382833 GTCCCTAGTCCCCAGTCCC 60.383 68.421 0.00 0.00 0.00 4.46
155 156 0.252558 TTGTCCCTAGTCCCCAGTCC 60.253 60.000 0.00 0.00 0.00 3.85
156 157 0.903236 GTTGTCCCTAGTCCCCAGTC 59.097 60.000 0.00 0.00 0.00 3.51
157 158 0.192566 TGTTGTCCCTAGTCCCCAGT 59.807 55.000 0.00 0.00 0.00 4.00
158 159 0.613777 GTGTTGTCCCTAGTCCCCAG 59.386 60.000 0.00 0.00 0.00 4.45
159 160 0.838987 GGTGTTGTCCCTAGTCCCCA 60.839 60.000 0.00 0.00 0.00 4.96
160 161 1.896122 CGGTGTTGTCCCTAGTCCCC 61.896 65.000 0.00 0.00 0.00 4.81
161 162 0.901580 TCGGTGTTGTCCCTAGTCCC 60.902 60.000 0.00 0.00 0.00 4.46
162 163 0.245813 GTCGGTGTTGTCCCTAGTCC 59.754 60.000 0.00 0.00 0.00 3.85
163 164 0.245813 GGTCGGTGTTGTCCCTAGTC 59.754 60.000 0.00 0.00 0.00 2.59
164 165 1.530013 CGGTCGGTGTTGTCCCTAGT 61.530 60.000 0.00 0.00 0.00 2.57
165 166 1.214589 CGGTCGGTGTTGTCCCTAG 59.785 63.158 0.00 0.00 0.00 3.02
166 167 2.277591 CCGGTCGGTGTTGTCCCTA 61.278 63.158 0.55 0.00 0.00 3.53
167 168 3.622826 CCGGTCGGTGTTGTCCCT 61.623 66.667 0.55 0.00 0.00 4.20
177 178 3.961729 GGTCAAAAGACCGGTCGG 58.038 61.111 28.26 18.60 42.03 4.79
183 184 0.037734 ATGGACCCGGTCAAAAGACC 59.962 55.000 19.43 4.59 41.68 3.85
184 185 1.271163 TGATGGACCCGGTCAAAAGAC 60.271 52.381 19.43 1.26 33.68 3.01
185 186 1.060729 TGATGGACCCGGTCAAAAGA 58.939 50.000 19.43 0.00 33.68 2.52
186 187 1.904287 TTGATGGACCCGGTCAAAAG 58.096 50.000 19.43 0.00 33.68 2.27
187 188 1.957877 GTTTGATGGACCCGGTCAAAA 59.042 47.619 19.43 10.52 41.77 2.44
188 189 1.133761 TGTTTGATGGACCCGGTCAAA 60.134 47.619 19.43 11.88 38.95 2.69
189 190 0.474614 TGTTTGATGGACCCGGTCAA 59.525 50.000 19.43 8.70 33.68 3.18
190 191 0.036164 CTGTTTGATGGACCCGGTCA 59.964 55.000 19.43 6.07 33.68 4.02
191 192 0.323629 TCTGTTTGATGGACCCGGTC 59.676 55.000 9.30 9.30 0.00 4.79
192 193 0.324943 CTCTGTTTGATGGACCCGGT 59.675 55.000 0.00 0.00 0.00 5.28
193 194 0.392998 CCTCTGTTTGATGGACCCGG 60.393 60.000 0.00 0.00 0.00 5.73
194 195 1.026718 GCCTCTGTTTGATGGACCCG 61.027 60.000 0.00 0.00 0.00 5.28
195 196 0.038166 TGCCTCTGTTTGATGGACCC 59.962 55.000 0.00 0.00 0.00 4.46
196 197 1.168714 GTGCCTCTGTTTGATGGACC 58.831 55.000 0.00 0.00 0.00 4.46
197 198 1.537202 GTGTGCCTCTGTTTGATGGAC 59.463 52.381 0.00 0.00 33.61 4.02
198 199 1.142667 TGTGTGCCTCTGTTTGATGGA 59.857 47.619 0.00 0.00 0.00 3.41
199 200 1.608055 TGTGTGCCTCTGTTTGATGG 58.392 50.000 0.00 0.00 0.00 3.51
200 201 2.602933 CGTTGTGTGCCTCTGTTTGATG 60.603 50.000 0.00 0.00 0.00 3.07
201 202 1.603802 CGTTGTGTGCCTCTGTTTGAT 59.396 47.619 0.00 0.00 0.00 2.57
202 203 1.013596 CGTTGTGTGCCTCTGTTTGA 58.986 50.000 0.00 0.00 0.00 2.69
203 204 0.592247 GCGTTGTGTGCCTCTGTTTG 60.592 55.000 0.00 0.00 0.00 2.93
204 205 1.727467 GCGTTGTGTGCCTCTGTTT 59.273 52.632 0.00 0.00 0.00 2.83
205 206 3.420943 GCGTTGTGTGCCTCTGTT 58.579 55.556 0.00 0.00 0.00 3.16
212 213 1.203313 GTTAGACGGCGTTGTGTGC 59.797 57.895 16.19 0.00 0.00 4.57
213 214 1.485514 CGTTAGACGGCGTTGTGTG 59.514 57.895 16.19 0.49 38.08 3.82
214 215 3.926497 CGTTAGACGGCGTTGTGT 58.074 55.556 16.19 1.87 38.08 3.72
223 224 2.202570 CCCGACAGCCGTTAGACG 60.203 66.667 0.00 0.00 42.11 4.18
224 225 1.153881 GTCCCGACAGCCGTTAGAC 60.154 63.158 0.00 0.00 36.31 2.59
225 226 2.693762 CGTCCCGACAGCCGTTAGA 61.694 63.158 0.00 0.00 36.31 2.10
226 227 2.202570 CGTCCCGACAGCCGTTAG 60.203 66.667 0.00 0.00 36.31 2.34
227 228 3.751246 CCGTCCCGACAGCCGTTA 61.751 66.667 0.00 0.00 36.31 3.18
248 249 4.588854 TTGCGTACGTGGCACCGT 62.589 61.111 17.90 15.21 40.71 4.83
249 250 2.376231 TTTTTGCGTACGTGGCACCG 62.376 55.000 17.90 11.17 40.71 4.94
250 251 1.355916 TTTTTGCGTACGTGGCACC 59.644 52.632 17.90 0.00 40.71 5.01
265 266 0.190815 ATGACAGGTGGGCCCTTTTT 59.809 50.000 25.70 2.83 42.73 1.94
266 267 1.080638 TATGACAGGTGGGCCCTTTT 58.919 50.000 25.70 4.82 42.73 2.27
267 268 1.080638 TTATGACAGGTGGGCCCTTT 58.919 50.000 25.70 5.24 42.73 3.11
268 269 1.080638 TTTATGACAGGTGGGCCCTT 58.919 50.000 25.70 5.67 42.73 3.95
270 271 0.039035 TGTTTATGACAGGTGGGCCC 59.961 55.000 17.59 17.59 33.40 5.80
271 272 1.818674 CTTGTTTATGACAGGTGGGCC 59.181 52.381 0.00 0.00 39.94 5.80
272 273 1.202348 GCTTGTTTATGACAGGTGGGC 59.798 52.381 0.00 0.00 39.94 5.36
273 274 2.795329 AGCTTGTTTATGACAGGTGGG 58.205 47.619 0.00 0.00 39.94 4.61
274 275 5.473504 AGTTAAGCTTGTTTATGACAGGTGG 59.526 40.000 9.86 0.00 39.94 4.61
275 276 6.204688 TCAGTTAAGCTTGTTTATGACAGGTG 59.795 38.462 9.86 0.00 39.94 4.00
276 277 6.296026 TCAGTTAAGCTTGTTTATGACAGGT 58.704 36.000 9.86 0.00 39.94 4.00
277 278 6.621596 GCTCAGTTAAGCTTGTTTATGACAGG 60.622 42.308 9.86 0.00 39.27 4.00
278 279 6.310197 GCTCAGTTAAGCTTGTTTATGACAG 58.690 40.000 9.86 0.00 39.27 3.51
279 280 5.181245 GGCTCAGTTAAGCTTGTTTATGACA 59.819 40.000 9.86 0.00 42.13 3.58
280 281 5.392057 GGGCTCAGTTAAGCTTGTTTATGAC 60.392 44.000 9.86 0.00 42.13 3.06
281 282 4.700213 GGGCTCAGTTAAGCTTGTTTATGA 59.300 41.667 9.86 5.47 42.13 2.15
282 283 4.437390 CGGGCTCAGTTAAGCTTGTTTATG 60.437 45.833 9.86 1.05 42.13 1.90
283 284 3.689649 CGGGCTCAGTTAAGCTTGTTTAT 59.310 43.478 9.86 0.00 42.13 1.40
284 285 3.071479 CGGGCTCAGTTAAGCTTGTTTA 58.929 45.455 9.86 0.00 42.13 2.01
285 286 1.880027 CGGGCTCAGTTAAGCTTGTTT 59.120 47.619 9.86 0.00 42.13 2.83
286 287 1.071699 TCGGGCTCAGTTAAGCTTGTT 59.928 47.619 9.86 0.00 42.13 2.83
287 288 0.685097 TCGGGCTCAGTTAAGCTTGT 59.315 50.000 9.86 0.00 42.13 3.16
288 289 1.936547 GATCGGGCTCAGTTAAGCTTG 59.063 52.381 9.86 0.00 42.13 4.01
289 290 1.134371 GGATCGGGCTCAGTTAAGCTT 60.134 52.381 3.48 3.48 42.13 3.74
290 291 0.466124 GGATCGGGCTCAGTTAAGCT 59.534 55.000 0.00 0.00 42.13 3.74
291 292 0.876342 CGGATCGGGCTCAGTTAAGC 60.876 60.000 0.00 0.00 41.73 3.09
292 293 0.876342 GCGGATCGGGCTCAGTTAAG 60.876 60.000 2.13 0.00 0.00 1.85
293 294 1.143183 GCGGATCGGGCTCAGTTAA 59.857 57.895 2.13 0.00 0.00 2.01
294 295 2.792947 GGCGGATCGGGCTCAGTTA 61.793 63.158 18.13 0.00 0.00 2.24
295 296 4.162690 GGCGGATCGGGCTCAGTT 62.163 66.667 18.13 0.00 0.00 3.16
299 300 4.726351 GATCGGCGGATCGGGCTC 62.726 72.222 21.82 11.67 39.72 4.70
306 307 0.811616 GAAAGCACTGATCGGCGGAT 60.812 55.000 7.21 6.45 34.96 4.18
307 308 1.447838 GAAAGCACTGATCGGCGGA 60.448 57.895 7.21 0.00 34.54 5.54
308 309 1.448540 AGAAAGCACTGATCGGCGG 60.449 57.895 7.21 0.00 34.54 6.13
309 310 1.712081 CAGAAAGCACTGATCGGCG 59.288 57.895 0.00 0.00 39.94 6.46
310 311 1.427020 GCAGAAAGCACTGATCGGC 59.573 57.895 0.00 0.00 44.79 5.54
320 321 4.794169 TCGGTAATCTTTTTGCAGAAAGC 58.206 39.130 21.68 9.88 45.96 3.51
321 322 6.578919 GTCTTCGGTAATCTTTTTGCAGAAAG 59.421 38.462 20.73 20.73 37.85 2.62
322 323 6.038825 TGTCTTCGGTAATCTTTTTGCAGAAA 59.961 34.615 2.07 2.07 0.00 2.52
323 324 5.529430 TGTCTTCGGTAATCTTTTTGCAGAA 59.471 36.000 0.00 0.00 0.00 3.02
324 325 5.060506 TGTCTTCGGTAATCTTTTTGCAGA 58.939 37.500 0.00 0.00 0.00 4.26
325 326 5.356882 TGTCTTCGGTAATCTTTTTGCAG 57.643 39.130 0.00 0.00 0.00 4.41
326 327 5.335583 CCATGTCTTCGGTAATCTTTTTGCA 60.336 40.000 0.00 0.00 0.00 4.08
327 328 5.095490 CCATGTCTTCGGTAATCTTTTTGC 58.905 41.667 0.00 0.00 0.00 3.68
328 329 6.086222 CACCATGTCTTCGGTAATCTTTTTG 58.914 40.000 0.00 0.00 32.98 2.44
329 330 5.768164 ACACCATGTCTTCGGTAATCTTTTT 59.232 36.000 0.00 0.00 32.98 1.94
330 331 5.313712 ACACCATGTCTTCGGTAATCTTTT 58.686 37.500 0.00 0.00 32.98 2.27
331 332 4.906618 ACACCATGTCTTCGGTAATCTTT 58.093 39.130 0.00 0.00 32.98 2.52
332 333 4.553330 ACACCATGTCTTCGGTAATCTT 57.447 40.909 0.00 0.00 32.98 2.40
333 334 4.553330 AACACCATGTCTTCGGTAATCT 57.447 40.909 0.00 0.00 32.98 2.40
334 335 5.411669 AGAAAACACCATGTCTTCGGTAATC 59.588 40.000 0.00 0.00 32.98 1.75
335 336 5.181245 CAGAAAACACCATGTCTTCGGTAAT 59.819 40.000 0.00 0.00 32.98 1.89
336 337 4.513692 CAGAAAACACCATGTCTTCGGTAA 59.486 41.667 0.00 0.00 32.98 2.85
337 338 4.062293 CAGAAAACACCATGTCTTCGGTA 58.938 43.478 0.00 0.00 32.98 4.02
338 339 2.878406 CAGAAAACACCATGTCTTCGGT 59.122 45.455 0.00 0.00 35.27 4.69
339 340 2.350772 GCAGAAAACACCATGTCTTCGG 60.351 50.000 0.00 0.00 0.00 4.30
340 341 2.290367 TGCAGAAAACACCATGTCTTCG 59.710 45.455 0.00 0.00 0.00 3.79
341 342 3.988379 TGCAGAAAACACCATGTCTTC 57.012 42.857 0.00 0.00 0.00 2.87
342 343 4.734398 TTTGCAGAAAACACCATGTCTT 57.266 36.364 0.00 0.00 0.00 3.01
343 344 4.734398 TTTTGCAGAAAACACCATGTCT 57.266 36.364 0.00 0.00 0.00 3.41
363 364 7.203910 TGCGAAAACCACTACAATACATTTTT 58.796 30.769 0.00 0.00 0.00 1.94
364 365 6.740110 TGCGAAAACCACTACAATACATTTT 58.260 32.000 0.00 0.00 0.00 1.82
365 366 6.320494 TGCGAAAACCACTACAATACATTT 57.680 33.333 0.00 0.00 0.00 2.32
366 367 5.950758 TGCGAAAACCACTACAATACATT 57.049 34.783 0.00 0.00 0.00 2.71
367 368 5.950758 TTGCGAAAACCACTACAATACAT 57.049 34.783 0.00 0.00 0.00 2.29
368 369 5.512473 GTTTGCGAAAACCACTACAATACA 58.488 37.500 7.88 0.00 0.00 2.29
387 388 2.168313 ACCACTTTGAAGGCAAGGTTTG 59.832 45.455 0.00 0.00 40.94 2.93
388 389 2.168313 CACCACTTTGAAGGCAAGGTTT 59.832 45.455 0.00 0.00 40.94 3.27
389 390 1.756538 CACCACTTTGAAGGCAAGGTT 59.243 47.619 0.00 0.00 40.94 3.50
390 391 1.402787 CACCACTTTGAAGGCAAGGT 58.597 50.000 0.00 0.00 44.09 3.50
391 392 0.675633 CCACCACTTTGAAGGCAAGG 59.324 55.000 0.00 0.00 37.16 3.61
392 393 1.402787 ACCACCACTTTGAAGGCAAG 58.597 50.000 0.00 0.00 35.04 4.01
393 394 1.859302 AACCACCACTTTGAAGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
394 395 1.859302 AAACCACCACTTTGAAGGCA 58.141 45.000 0.00 0.00 0.00 4.75
395 396 2.093711 ACAAAACCACCACTTTGAAGGC 60.094 45.455 1.80 0.00 36.30 4.35
396 397 3.520569 CACAAAACCACCACTTTGAAGG 58.479 45.455 1.80 0.00 36.30 3.46
397 398 2.929398 GCACAAAACCACCACTTTGAAG 59.071 45.455 1.80 0.00 36.30 3.02
398 399 2.300152 TGCACAAAACCACCACTTTGAA 59.700 40.909 1.80 0.00 36.30 2.69
399 400 1.895798 TGCACAAAACCACCACTTTGA 59.104 42.857 1.80 0.00 36.30 2.69
400 401 2.376808 TGCACAAAACCACCACTTTG 57.623 45.000 0.00 0.00 38.29 2.77
401 402 3.625649 ATTGCACAAAACCACCACTTT 57.374 38.095 0.00 0.00 0.00 2.66
402 403 3.625649 AATTGCACAAAACCACCACTT 57.374 38.095 0.00 0.00 0.00 3.16
403 404 3.625649 AAATTGCACAAAACCACCACT 57.374 38.095 0.00 0.00 0.00 4.00
404 405 4.438148 AGTAAATTGCACAAAACCACCAC 58.562 39.130 0.00 0.00 0.00 4.16
405 406 4.442192 GGAGTAAATTGCACAAAACCACCA 60.442 41.667 0.00 0.00 0.00 4.17
406 407 4.055360 GGAGTAAATTGCACAAAACCACC 58.945 43.478 0.00 0.00 0.00 4.61
407 408 3.733727 CGGAGTAAATTGCACAAAACCAC 59.266 43.478 0.00 0.00 0.00 4.16
408 409 3.632604 TCGGAGTAAATTGCACAAAACCA 59.367 39.130 0.00 0.00 0.00 3.67
409 410 4.231718 TCGGAGTAAATTGCACAAAACC 57.768 40.909 0.00 0.00 0.00 3.27
410 411 6.576551 TTTTCGGAGTAAATTGCACAAAAC 57.423 33.333 0.00 0.00 0.00 2.43
411 412 6.256757 CCTTTTTCGGAGTAAATTGCACAAAA 59.743 34.615 0.00 0.00 0.00 2.44
412 413 5.751028 CCTTTTTCGGAGTAAATTGCACAAA 59.249 36.000 0.00 0.00 0.00 2.83
413 414 5.067936 TCCTTTTTCGGAGTAAATTGCACAA 59.932 36.000 0.00 0.00 0.00 3.33
414 415 4.580995 TCCTTTTTCGGAGTAAATTGCACA 59.419 37.500 0.00 0.00 0.00 4.57
415 416 5.116069 TCCTTTTTCGGAGTAAATTGCAC 57.884 39.130 0.00 0.00 0.00 4.57
416 417 5.776173 TTCCTTTTTCGGAGTAAATTGCA 57.224 34.783 0.00 0.00 33.89 4.08
417 418 7.652300 AATTTCCTTTTTCGGAGTAAATTGC 57.348 32.000 0.00 0.00 33.89 3.56
491 492 9.149556 GTGCAATTTAACGGTTTAAACATTTTC 57.850 29.630 19.57 1.42 39.47 2.29
612 615 7.120923 AGCATCTCCAATAGAAAATGCAATT 57.879 32.000 7.75 0.00 39.30 2.32
613 616 6.726490 AGCATCTCCAATAGAAAATGCAAT 57.274 33.333 7.75 0.00 39.30 3.56
647 656 3.423123 CGGCTAACACGTCTCAACATTTC 60.423 47.826 0.00 0.00 0.00 2.17
649 658 2.066262 CGGCTAACACGTCTCAACATT 58.934 47.619 0.00 0.00 0.00 2.71
666 675 0.747852 TTTTTCCTCCCAAACACGGC 59.252 50.000 0.00 0.00 0.00 5.68
696 705 5.470047 AGAATAGCAAATACTACCTCCGG 57.530 43.478 0.00 0.00 0.00 5.14
702 711 7.648510 ACGCTCTGTTAGAATAGCAAATACTAC 59.351 37.037 0.00 0.00 34.60 2.73
703 712 7.713750 ACGCTCTGTTAGAATAGCAAATACTA 58.286 34.615 0.00 0.00 34.60 1.82
704 713 6.574350 ACGCTCTGTTAGAATAGCAAATACT 58.426 36.000 0.00 0.00 34.60 2.12
705 714 6.830114 ACGCTCTGTTAGAATAGCAAATAC 57.170 37.500 0.00 0.00 34.60 1.89
707 716 5.463724 GCTACGCTCTGTTAGAATAGCAAAT 59.536 40.000 0.00 0.00 38.84 2.32
708 717 4.804139 GCTACGCTCTGTTAGAATAGCAAA 59.196 41.667 0.00 0.00 38.84 3.68
709 718 4.360563 GCTACGCTCTGTTAGAATAGCAA 58.639 43.478 0.00 0.00 38.84 3.91
710 719 3.243434 GGCTACGCTCTGTTAGAATAGCA 60.243 47.826 13.72 0.00 39.90 3.49
711 720 3.243434 TGGCTACGCTCTGTTAGAATAGC 60.243 47.826 0.00 0.00 38.52 2.97
712 721 4.036971 AGTGGCTACGCTCTGTTAGAATAG 59.963 45.833 0.00 0.00 29.74 1.73
713 722 3.952323 AGTGGCTACGCTCTGTTAGAATA 59.048 43.478 0.00 0.00 29.74 1.75
714 723 2.761208 AGTGGCTACGCTCTGTTAGAAT 59.239 45.455 0.00 0.00 29.74 2.40
715 724 2.094700 CAGTGGCTACGCTCTGTTAGAA 60.095 50.000 0.00 0.00 34.61 2.10
716 725 1.472878 CAGTGGCTACGCTCTGTTAGA 59.527 52.381 0.00 0.00 34.61 2.10
717 726 1.472878 TCAGTGGCTACGCTCTGTTAG 59.527 52.381 0.00 0.00 34.61 2.34
718 727 1.541379 TCAGTGGCTACGCTCTGTTA 58.459 50.000 0.00 0.00 34.61 2.41
719 728 0.679505 TTCAGTGGCTACGCTCTGTT 59.320 50.000 0.00 0.00 34.61 3.16
763 772 5.215903 CCTTTTCTCTTTTTCTTTCCGCTC 58.784 41.667 0.00 0.00 0.00 5.03
780 789 0.038526 TCTCGGTCGTCTGCCTTTTC 60.039 55.000 0.00 0.00 0.00 2.29
842 851 0.445436 GAGTCAATGCAAGTCAGCCG 59.555 55.000 0.00 0.00 0.00 5.52
844 853 5.496133 AATATGAGTCAATGCAAGTCAGC 57.504 39.130 0.00 0.00 30.00 4.26
861 870 3.602483 CGGGGGTATAACCGGAAATATG 58.398 50.000 9.46 0.00 46.08 1.78
1099 1110 0.320946 CCAAACCCTAACGGCGAGAA 60.321 55.000 16.62 0.00 33.26 2.87
1117 1128 2.668550 GTAATCCATCCCCGCGCC 60.669 66.667 0.00 0.00 0.00 6.53
1121 1132 0.105964 TTGCTCGTAATCCATCCCCG 59.894 55.000 0.00 0.00 0.00 5.73
1746 1777 3.865745 CGTGTAGACTCAATTCACCATCC 59.134 47.826 0.00 0.00 0.00 3.51
1830 1862 2.166664 ACGATGAGAAGTTCCCTGCTAC 59.833 50.000 0.00 0.00 0.00 3.58
1909 1941 4.294232 CATCTCGACGAAGAATAGTGCAT 58.706 43.478 0.00 0.00 0.00 3.96
2013 2048 8.432359 GTTTCAATCCATACCGAAAACAAAATC 58.568 33.333 0.00 0.00 0.00 2.17
2021 2056 4.571919 ACTCGTTTCAATCCATACCGAAA 58.428 39.130 0.00 0.00 0.00 3.46
2413 2457 9.080915 GGAAAAATTGCTAATCATTCAGAACTC 57.919 33.333 0.00 0.00 0.00 3.01
2456 2501 9.543783 GAGGGAGTATGTTCTAATACGATTTTT 57.456 33.333 0.00 0.00 37.96 1.94
2476 2521 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2477 2522 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2479 2524 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2481 2526 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2482 2527 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2483 2528 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2484 2529 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2485 2530 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2486 2531 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2487 2532 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2520 2565 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
2521 2566 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2522 2567 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2523 2568 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2524 2569 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2525 2570 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2526 2571 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2527 2572 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2528 2573 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2529 2574 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2530 2575 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2531 2576 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2532 2577 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2533 2578 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2534 2579 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2535 2580 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2536 2581 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2537 2582 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2538 2583 4.533311 ACTTACTCCCTCCGTTCCAAAATA 59.467 41.667 0.00 0.00 0.00 1.40
2539 2584 3.329814 ACTTACTCCCTCCGTTCCAAAAT 59.670 43.478 0.00 0.00 0.00 1.82
2540 2585 2.707257 ACTTACTCCCTCCGTTCCAAAA 59.293 45.455 0.00 0.00 0.00 2.44
2541 2586 2.332117 ACTTACTCCCTCCGTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
2542 2587 2.019807 ACTTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2543 2588 1.621814 CAACTTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
2544 2589 1.066358 CCAACTTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
2545 2590 1.897802 TCCAACTTACTCCCTCCGTTC 59.102 52.381 0.00 0.00 0.00 3.95
2546 2591 2.019807 TCCAACTTACTCCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
2547 2592 1.900486 CTTCCAACTTACTCCCTCCGT 59.100 52.381 0.00 0.00 0.00 4.69
2548 2593 1.207329 CCTTCCAACTTACTCCCTCCG 59.793 57.143 0.00 0.00 0.00 4.63
2549 2594 2.547990 TCCTTCCAACTTACTCCCTCC 58.452 52.381 0.00 0.00 0.00 4.30
2550 2595 4.635699 TTTCCTTCCAACTTACTCCCTC 57.364 45.455 0.00 0.00 0.00 4.30
2551 2596 5.397553 TTTTTCCTTCCAACTTACTCCCT 57.602 39.130 0.00 0.00 0.00 4.20
2579 2624 4.675114 CACGAGCCAAATACTCAAACAAAC 59.325 41.667 0.00 0.00 33.58 2.93
2583 2628 2.225491 TGCACGAGCCAAATACTCAAAC 59.775 45.455 1.39 0.00 41.13 2.93
2584 2629 2.499197 TGCACGAGCCAAATACTCAAA 58.501 42.857 1.39 0.00 41.13 2.69
2615 2660 7.998964 AGTGGAAAAGGAAGATCAGTTAGAAAA 59.001 33.333 0.00 0.00 0.00 2.29
2637 2688 1.565305 GAGCTGATGCGTTCTAGTGG 58.435 55.000 0.00 0.00 45.42 4.00
2667 2718 4.097286 GGGCGCTAATGGTTCTAATTTTGA 59.903 41.667 7.64 0.00 0.00 2.69
2751 2802 2.092429 GGACCCTGGCTTGACATAATGA 60.092 50.000 0.00 0.00 0.00 2.57
2849 2900 1.002366 CCTTTGAAGACGCTGGATCG 58.998 55.000 0.00 0.00 0.00 3.69
2996 3047 1.467920 ATAAACCTTCTGGCAGCTGC 58.532 50.000 30.88 30.88 41.14 5.25
2999 3050 1.401905 CGGAATAAACCTTCTGGCAGC 59.598 52.381 10.34 0.00 36.63 5.25
3287 3338 5.007626 GCGAAATGGCATAACTGAATAGTCA 59.992 40.000 0.00 0.00 35.69 3.41
3464 3515 6.299805 TCAGTGAAGCCTTGAATAGTGTAT 57.700 37.500 0.00 0.00 0.00 2.29
3521 3572 1.661463 TCCTTGACTGCCCTGATTCT 58.339 50.000 0.00 0.00 0.00 2.40
3632 3683 4.395959 AAGCTCAATGGGCACATAATTG 57.604 40.909 8.22 0.00 35.94 2.32
3680 3731 5.585844 GTCCTTATTCAAATTTGCCATTGGG 59.414 40.000 13.54 10.46 37.18 4.12
3960 4012 2.240493 ATACTAACAGATGCACCCGC 57.760 50.000 0.00 0.00 39.24 6.13
3961 4013 4.201910 CCAAAATACTAACAGATGCACCCG 60.202 45.833 0.00 0.00 0.00 5.28
3962 4014 4.705023 ACCAAAATACTAACAGATGCACCC 59.295 41.667 0.00 0.00 0.00 4.61
3963 4015 5.414454 TGACCAAAATACTAACAGATGCACC 59.586 40.000 0.00 0.00 0.00 5.01
3964 4016 6.494893 TGACCAAAATACTAACAGATGCAC 57.505 37.500 0.00 0.00 0.00 4.57
3965 4017 7.498900 CCTATGACCAAAATACTAACAGATGCA 59.501 37.037 0.00 0.00 0.00 3.96
3966 4018 7.715249 TCCTATGACCAAAATACTAACAGATGC 59.285 37.037 0.00 0.00 0.00 3.91
4046 4444 7.742767 AGTAATGTGGTAGAGGTACTTTTGTT 58.257 34.615 0.00 0.00 41.55 2.83
4274 4672 1.891178 TCTCGAGTTCGTATTGTGCG 58.109 50.000 13.13 0.00 40.80 5.34
4395 4796 6.009908 TCCATCATCTTCACATCCAAAGAT 57.990 37.500 0.00 0.00 41.71 2.40
4425 4826 2.245438 GAGGAGAAAGGACCCTGCCG 62.245 65.000 0.00 0.00 0.00 5.69
4479 4880 5.760253 AGATGGAGTGATACTTAAATTGCCG 59.240 40.000 0.00 0.00 0.00 5.69
4689 5090 3.065786 ACATTGCCGATAGATGCACAAAG 59.934 43.478 0.00 0.00 37.18 2.77
4734 5135 2.433868 TGTTCAGCTCCTCGTACAAC 57.566 50.000 0.00 0.00 0.00 3.32
4735 5136 3.390135 CTTTGTTCAGCTCCTCGTACAA 58.610 45.455 0.00 0.00 0.00 2.41
4854 5255 1.267574 GGATCCCCAGCTGTGTCTCA 61.268 60.000 13.81 0.00 0.00 3.27
4911 5312 1.612442 GTACTGGTCCTGGCCCTGA 60.612 63.158 7.70 0.00 0.00 3.86
5037 5441 0.034896 GTGACGGGTGGTTGACATCT 59.965 55.000 0.00 0.00 0.00 2.90
5040 5444 2.506962 GGTGACGGGTGGTTGACA 59.493 61.111 0.00 0.00 0.00 3.58
5469 5879 0.535780 AGTCGTACGTCACAGGGTCA 60.536 55.000 16.05 0.00 0.00 4.02
5772 6185 0.319555 TCGGGAAGTTGCTGAAGTCG 60.320 55.000 3.01 0.00 0.00 4.18
6134 6553 1.068434 ACAAGCAAATTCCCACCGTTG 59.932 47.619 0.00 0.00 0.00 4.10
6191 6610 4.100963 TCTTTGTCTGAAGCTACTTGTCCA 59.899 41.667 0.00 0.00 0.00 4.02
6280 6699 5.583457 TGTATGCTCTTGTGAATCTGTGATG 59.417 40.000 0.00 0.00 0.00 3.07
6626 7045 7.174946 CACTTTAAACCAGTGATCATAACCAGT 59.825 37.037 0.00 0.00 43.90 4.00
6627 7046 7.530010 CACTTTAAACCAGTGATCATAACCAG 58.470 38.462 0.00 0.00 43.90 4.00
6628 7047 6.072175 GCACTTTAAACCAGTGATCATAACCA 60.072 38.462 9.49 0.00 43.90 3.67
6629 7048 6.322491 GCACTTTAAACCAGTGATCATAACC 58.678 40.000 9.49 0.00 43.90 2.85
6630 7049 6.072175 TGGCACTTTAAACCAGTGATCATAAC 60.072 38.462 9.49 0.00 43.90 1.89
6631 7050 6.007076 TGGCACTTTAAACCAGTGATCATAA 58.993 36.000 9.49 0.00 43.90 1.90
6632 7051 5.565509 TGGCACTTTAAACCAGTGATCATA 58.434 37.500 9.49 0.00 43.90 2.15
6633 7052 4.406456 TGGCACTTTAAACCAGTGATCAT 58.594 39.130 9.49 0.00 43.90 2.45
6634 7053 3.826524 TGGCACTTTAAACCAGTGATCA 58.173 40.909 9.49 0.00 43.90 2.92
6635 7054 4.142381 GGATGGCACTTTAAACCAGTGATC 60.142 45.833 9.49 4.99 43.90 2.92
6636 7055 3.763897 GGATGGCACTTTAAACCAGTGAT 59.236 43.478 9.49 0.00 43.90 3.06
6637 7056 3.153919 GGATGGCACTTTAAACCAGTGA 58.846 45.455 9.49 0.00 43.90 3.41
6638 7057 2.095263 CGGATGGCACTTTAAACCAGTG 60.095 50.000 0.00 2.03 43.99 3.66
7103 7868 8.311650 TCTCAGCTTGTTTCTAAATAGTTCAC 57.688 34.615 0.00 0.00 0.00 3.18
7294 8489 0.742505 CATGCATCCATCGCTGGTTT 59.257 50.000 5.00 0.00 43.61 3.27
7305 8500 3.358932 AACCCCCGTCCATGCATCC 62.359 63.158 0.00 0.00 0.00 3.51
7310 8505 1.743995 GTTCGAACCCCCGTCCATG 60.744 63.158 17.68 0.00 0.00 3.66
7336 8531 0.454957 GTAGCCGTCGTAGCGAACAA 60.455 55.000 0.00 0.00 37.72 2.83
7349 8544 0.868602 CGATGGTACCAACGTAGCCG 60.869 60.000 30.26 15.92 41.39 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.