Multiple sequence alignment - TraesCS2D01G416900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G416900 chr2D 100.000 3173 0 0 1 3173 531314768 531317940 0.000000e+00 5860.0
1 TraesCS2D01G416900 chr2D 85.144 626 91 2 1606 2231 531235903 531236526 9.600000e-180 640.0
2 TraesCS2D01G416900 chr2D 96.519 316 10 1 516 830 24923165 24923480 3.630000e-144 521.0
3 TraesCS2D01G416900 chr2D 86.207 406 37 8 2678 3081 631044317 631043929 3.780000e-114 422.0
4 TraesCS2D01G416900 chr2D 78.873 568 109 7 1607 2169 529694598 529695159 1.070000e-99 374.0
5 TraesCS2D01G416900 chr2D 79.532 342 39 11 179 516 531255773 531256087 6.890000e-52 215.0
6 TraesCS2D01G416900 chr2D 86.567 67 1 1 122 180 531234576 531234642 2.040000e-07 67.6
7 TraesCS2D01G416900 chr2B 94.469 1609 56 11 831 2406 631133320 631134928 0.000000e+00 2447.0
8 TraesCS2D01G416900 chr2B 80.946 803 122 22 1606 2405 630883491 630884265 9.730000e-170 606.0
9 TraesCS2D01G416900 chr2B 96.063 254 8 1 265 516 631133069 631133322 2.280000e-111 412.0
10 TraesCS2D01G416900 chr2B 95.580 181 8 0 1 181 631132773 631132953 1.110000e-74 291.0
11 TraesCS2D01G416900 chr2B 92.982 114 8 0 351 464 630882602 630882715 1.960000e-37 167.0
12 TraesCS2D01G416900 chr2B 97.222 36 0 1 124 159 630881889 630881923 3.420000e-05 60.2
13 TraesCS2D01G416900 chr2B 96.970 33 1 0 323 355 630882553 630882585 4.420000e-04 56.5
14 TraesCS2D01G416900 chr2A 98.177 768 14 0 1639 2406 675834518 675835285 0.000000e+00 1341.0
15 TraesCS2D01G416900 chr2A 94.072 388 14 1 1201 1579 675834132 675834519 5.900000e-162 580.0
16 TraesCS2D01G416900 chr2A 96.746 338 6 3 179 516 675818856 675819188 2.760000e-155 558.0
17 TraesCS2D01G416900 chr2A 97.627 295 7 0 912 1206 675819299 675819593 1.020000e-139 507.0
18 TraesCS2D01G416900 chr2A 80.139 574 100 9 1607 2173 674642412 674642978 1.760000e-112 416.0
19 TraesCS2D01G416900 chr2A 91.667 240 16 4 2405 2643 18292867 18292631 2.360000e-86 329.0
20 TraesCS2D01G416900 chr2A 93.956 182 11 0 1 182 675818627 675818808 3.120000e-70 276.0
21 TraesCS2D01G416900 chr2A 81.614 223 37 3 1607 1827 674546263 674546483 6.990000e-42 182.0
22 TraesCS2D01G416900 chr2A 81.614 223 37 3 1607 1827 674745430 674745650 6.990000e-42 182.0
23 TraesCS2D01G416900 chr2A 87.356 87 5 1 831 911 675819186 675819272 9.370000e-16 95.3
24 TraesCS2D01G416900 chr7D 94.409 787 22 12 2383 3151 69532413 69533195 0.000000e+00 1190.0
25 TraesCS2D01G416900 chr7D 84.627 670 68 13 2489 3148 19308753 19309397 4.460000e-178 634.0
26 TraesCS2D01G416900 chr7D 96.049 329 11 2 516 843 448262855 448263182 4.660000e-148 534.0
27 TraesCS2D01G416900 chr7D 95.706 326 12 2 517 841 400893583 400893259 1.010000e-144 523.0
28 TraesCS2D01G416900 chr7D 86.207 406 37 8 2678 3081 563734522 563734910 3.780000e-114 422.0
29 TraesCS2D01G416900 chr7D 86.207 406 37 8 2678 3081 634275173 634274785 3.780000e-114 422.0
30 TraesCS2D01G416900 chr7D 91.286 241 14 5 2407 2645 610561506 610561271 3.950000e-84 322.0
31 TraesCS2D01G416900 chr7D 90.805 87 8 0 2652 2738 245309102 245309016 2.000000e-22 117.0
32 TraesCS2D01G416900 chr3A 89.193 657 51 10 2505 3146 574281270 574280619 0.000000e+00 802.0
33 TraesCS2D01G416900 chr5D 94.444 342 16 3 510 849 513027394 513027734 1.010000e-144 523.0
34 TraesCS2D01G416900 chr5D 95.399 326 13 2 513 836 444786587 444786912 4.690000e-143 518.0
35 TraesCS2D01G416900 chr5D 90.688 247 17 4 2406 2651 436603863 436603622 1.100000e-84 324.0
36 TraesCS2D01G416900 chr6D 96.519 316 10 1 516 830 40836497 40836182 3.630000e-144 521.0
37 TraesCS2D01G416900 chr4D 96.508 315 11 0 517 831 228107075 228107389 3.630000e-144 521.0
38 TraesCS2D01G416900 chr4D 91.915 235 12 5 2407 2639 456275958 456276187 3.950000e-84 322.0
39 TraesCS2D01G416900 chr4D 90.283 247 16 8 2407 2651 95179453 95179213 1.840000e-82 316.0
40 TraesCS2D01G416900 chr4D 89.105 257 18 10 2392 2645 307236802 307236553 8.550000e-81 311.0
41 TraesCS2D01G416900 chr3D 95.692 325 12 2 517 840 565409614 565409937 3.630000e-144 521.0
42 TraesCS2D01G416900 chr3D 92.149 242 13 4 2406 2645 561099593 561099356 1.410000e-88 337.0
43 TraesCS2D01G416900 chrUn 95.950 321 12 1 515 834 10180650 10180970 1.300000e-143 520.0
44 TraesCS2D01G416900 chrUn 80.139 574 100 9 1607 2173 357781526 357780960 1.760000e-112 416.0
45 TraesCS2D01G416900 chr1D 78.490 702 108 26 2406 3087 460623713 460624391 1.360000e-113 420.0
46 TraesCS2D01G416900 chr1D 91.949 236 12 5 2406 2639 38791166 38791396 1.100000e-84 324.0
47 TraesCS2D01G416900 chr7A 82.736 307 47 4 2784 3087 114095279 114094976 5.220000e-68 268.0
48 TraesCS2D01G416900 chr5B 90.110 91 8 1 2643 2733 522625300 522625389 2.000000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G416900 chr2D 531314768 531317940 3172 False 5860.000 5860 100.000000 1 3173 1 chr2D.!!$F4 3172
1 TraesCS2D01G416900 chr2D 529694598 529695159 561 False 374.000 374 78.873000 1607 2169 1 chr2D.!!$F2 562
2 TraesCS2D01G416900 chr2D 531234576 531236526 1950 False 353.800 640 85.855500 122 2231 2 chr2D.!!$F5 2109
3 TraesCS2D01G416900 chr2B 631132773 631134928 2155 False 1050.000 2447 95.370667 1 2406 3 chr2B.!!$F2 2405
4 TraesCS2D01G416900 chr2B 630881889 630884265 2376 False 222.425 606 92.030000 124 2405 4 chr2B.!!$F1 2281
5 TraesCS2D01G416900 chr2A 675834132 675835285 1153 False 960.500 1341 96.124500 1201 2406 2 chr2A.!!$F5 1205
6 TraesCS2D01G416900 chr2A 674642412 674642978 566 False 416.000 416 80.139000 1607 2173 1 chr2A.!!$F2 566
7 TraesCS2D01G416900 chr2A 675818627 675819593 966 False 359.075 558 93.921250 1 1206 4 chr2A.!!$F4 1205
8 TraesCS2D01G416900 chr7D 69532413 69533195 782 False 1190.000 1190 94.409000 2383 3151 1 chr7D.!!$F2 768
9 TraesCS2D01G416900 chr7D 19308753 19309397 644 False 634.000 634 84.627000 2489 3148 1 chr7D.!!$F1 659
10 TraesCS2D01G416900 chr3A 574280619 574281270 651 True 802.000 802 89.193000 2505 3146 1 chr3A.!!$R1 641
11 TraesCS2D01G416900 chrUn 357780960 357781526 566 True 416.000 416 80.139000 1607 2173 1 chrUn.!!$R1 566
12 TraesCS2D01G416900 chr1D 460623713 460624391 678 False 420.000 420 78.490000 2406 3087 1 chr1D.!!$F2 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 1206 0.034089 AAGCGCTTAGGCAGGGAAAT 60.034 50.0 23.72 0.0 37.67 2.17 F
821 1479 0.035820 CTCGAATTCCCCCGAACCAA 60.036 55.0 0.00 0.0 34.17 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 2114 2.175202 CTGGATAGGATTAGGCGAGCT 58.825 52.381 0.0 0.0 0.0 4.09 R
2814 3573 2.125753 GCTGCCAGAGGACGAGTG 60.126 66.667 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.221581 ACAACCATTACCTTACGAACTGTCT 60.222 40.000 0.00 0.00 0.00 3.41
77 78 7.257722 CACAAAATATTCGGGCTAAAGAATGT 58.742 34.615 1.44 0.00 37.61 2.71
101 102 1.067212 ACTCTCACGTGACCTGTCAAC 59.933 52.381 15.76 0.00 41.85 3.18
115 116 3.489738 CCTGTCAACTTCAAACTGCAAGG 60.490 47.826 0.00 0.00 39.30 3.61
301 502 7.450903 ACACTACTATGGTTGAACTTTAAGCT 58.549 34.615 0.00 0.00 0.00 3.74
428 1086 0.111061 TGGCTGTCCTGACATGCTTT 59.889 50.000 15.98 0.00 41.01 3.51
478 1136 3.612004 CGTGTAACTTCTCTCGCTTCCTT 60.612 47.826 0.00 0.00 31.75 3.36
514 1172 3.194329 TCTCTGTCTATGCAACAGTCCTG 59.806 47.826 14.95 6.41 43.68 3.86
515 1173 3.165071 TCTGTCTATGCAACAGTCCTGA 58.835 45.455 14.95 6.71 43.68 3.86
516 1174 3.056536 TCTGTCTATGCAACAGTCCTGAC 60.057 47.826 14.95 4.90 43.68 3.51
517 1175 2.632512 TGTCTATGCAACAGTCCTGACA 59.367 45.455 0.40 0.00 0.00 3.58
518 1176 3.257393 GTCTATGCAACAGTCCTGACAG 58.743 50.000 0.40 0.00 0.00 3.51
519 1177 2.005451 CTATGCAACAGTCCTGACAGC 58.995 52.381 0.40 2.86 0.00 4.40
520 1178 0.399454 ATGCAACAGTCCTGACAGCT 59.601 50.000 0.40 0.00 0.00 4.24
521 1179 0.181114 TGCAACAGTCCTGACAGCTT 59.819 50.000 0.40 0.00 0.00 3.74
522 1180 0.590195 GCAACAGTCCTGACAGCTTG 59.410 55.000 0.40 0.00 0.00 4.01
523 1181 1.959042 CAACAGTCCTGACAGCTTGT 58.041 50.000 0.40 0.00 0.00 3.16
524 1182 2.292267 CAACAGTCCTGACAGCTTGTT 58.708 47.619 0.40 10.05 0.00 2.83
525 1183 2.684881 CAACAGTCCTGACAGCTTGTTT 59.315 45.455 12.13 0.00 0.00 2.83
526 1184 2.292267 ACAGTCCTGACAGCTTGTTTG 58.708 47.619 0.40 0.00 0.00 2.93
527 1185 1.605710 CAGTCCTGACAGCTTGTTTGG 59.394 52.381 0.00 0.00 0.00 3.28
528 1186 1.212935 AGTCCTGACAGCTTGTTTGGT 59.787 47.619 0.00 0.00 0.00 3.67
529 1187 2.438021 AGTCCTGACAGCTTGTTTGGTA 59.562 45.455 0.00 0.00 0.00 3.25
530 1188 3.118038 AGTCCTGACAGCTTGTTTGGTAA 60.118 43.478 0.00 0.00 0.00 2.85
531 1189 3.251004 GTCCTGACAGCTTGTTTGGTAAG 59.749 47.826 0.00 0.00 0.00 2.34
536 1194 3.865700 GCTTGTTTGGTAAGCGCTT 57.134 47.368 27.97 27.97 40.83 4.68
537 1195 2.981400 GCTTGTTTGGTAAGCGCTTA 57.019 45.000 25.53 25.53 40.83 3.09
538 1196 2.851534 GCTTGTTTGGTAAGCGCTTAG 58.148 47.619 29.42 17.83 40.83 2.18
539 1197 2.414161 GCTTGTTTGGTAAGCGCTTAGG 60.414 50.000 29.42 10.67 40.83 2.69
540 1198 1.161843 TGTTTGGTAAGCGCTTAGGC 58.838 50.000 29.42 18.38 0.00 3.93
541 1199 1.161843 GTTTGGTAAGCGCTTAGGCA 58.838 50.000 29.42 13.39 38.60 4.75
542 1200 1.130561 GTTTGGTAAGCGCTTAGGCAG 59.869 52.381 29.42 0.00 38.60 4.85
543 1201 0.392461 TTGGTAAGCGCTTAGGCAGG 60.392 55.000 29.42 0.00 38.60 4.85
544 1202 1.523938 GGTAAGCGCTTAGGCAGGG 60.524 63.158 29.42 0.00 38.60 4.45
545 1203 1.520666 GTAAGCGCTTAGGCAGGGA 59.479 57.895 29.42 5.41 37.67 4.20
546 1204 0.107848 GTAAGCGCTTAGGCAGGGAA 60.108 55.000 29.42 4.60 37.67 3.97
547 1205 0.616371 TAAGCGCTTAGGCAGGGAAA 59.384 50.000 25.53 1.40 37.67 3.13
548 1206 0.034089 AAGCGCTTAGGCAGGGAAAT 60.034 50.000 23.72 0.00 37.67 2.17
549 1207 0.749454 AGCGCTTAGGCAGGGAAATG 60.749 55.000 2.64 0.00 37.67 2.32
550 1208 0.748005 GCGCTTAGGCAGGGAAATGA 60.748 55.000 0.00 0.00 37.67 2.57
551 1209 1.303309 CGCTTAGGCAGGGAAATGAG 58.697 55.000 0.00 0.00 37.67 2.90
552 1210 1.134401 CGCTTAGGCAGGGAAATGAGA 60.134 52.381 0.00 0.00 37.67 3.27
553 1211 2.570135 GCTTAGGCAGGGAAATGAGAG 58.430 52.381 0.00 0.00 38.54 3.20
554 1212 2.092699 GCTTAGGCAGGGAAATGAGAGT 60.093 50.000 0.00 0.00 38.54 3.24
555 1213 3.623453 GCTTAGGCAGGGAAATGAGAGTT 60.623 47.826 0.00 0.00 38.54 3.01
556 1214 4.593956 CTTAGGCAGGGAAATGAGAGTTT 58.406 43.478 0.00 0.00 0.00 2.66
557 1215 2.800250 AGGCAGGGAAATGAGAGTTTG 58.200 47.619 0.00 0.00 0.00 2.93
558 1216 1.203287 GGCAGGGAAATGAGAGTTTGC 59.797 52.381 0.00 0.00 0.00 3.68
559 1217 1.888512 GCAGGGAAATGAGAGTTTGCA 59.111 47.619 0.00 0.00 31.87 4.08
560 1218 2.352127 GCAGGGAAATGAGAGTTTGCAC 60.352 50.000 0.00 0.00 31.87 4.57
561 1219 2.886523 CAGGGAAATGAGAGTTTGCACA 59.113 45.455 0.00 0.00 31.87 4.57
562 1220 3.318839 CAGGGAAATGAGAGTTTGCACAA 59.681 43.478 0.00 0.00 31.87 3.33
563 1221 3.571401 AGGGAAATGAGAGTTTGCACAAG 59.429 43.478 0.00 0.00 31.87 3.16
564 1222 3.305608 GGGAAATGAGAGTTTGCACAAGG 60.306 47.826 0.00 0.00 31.87 3.61
565 1223 3.305608 GGAAATGAGAGTTTGCACAAGGG 60.306 47.826 0.00 0.00 30.79 3.95
566 1224 2.664402 ATGAGAGTTTGCACAAGGGT 57.336 45.000 0.00 0.00 0.00 4.34
568 1226 1.064758 TGAGAGTTTGCACAAGGGTGT 60.065 47.619 0.00 0.00 46.95 4.16
569 1227 2.024414 GAGAGTTTGCACAAGGGTGTT 58.976 47.619 0.00 0.00 46.95 3.32
570 1228 2.427095 GAGAGTTTGCACAAGGGTGTTT 59.573 45.455 0.00 0.00 46.95 2.83
571 1229 3.626930 AGAGTTTGCACAAGGGTGTTTA 58.373 40.909 0.00 0.00 46.95 2.01
572 1230 4.215109 AGAGTTTGCACAAGGGTGTTTAT 58.785 39.130 0.00 0.00 46.95 1.40
573 1231 4.037923 AGAGTTTGCACAAGGGTGTTTATG 59.962 41.667 0.00 0.00 46.95 1.90
574 1232 3.957497 AGTTTGCACAAGGGTGTTTATGA 59.043 39.130 0.00 0.00 46.95 2.15
575 1233 4.404073 AGTTTGCACAAGGGTGTTTATGAA 59.596 37.500 0.00 0.00 46.95 2.57
576 1234 4.582701 TTGCACAAGGGTGTTTATGAAG 57.417 40.909 0.00 0.00 46.95 3.02
577 1235 2.890311 TGCACAAGGGTGTTTATGAAGG 59.110 45.455 0.00 0.00 46.95 3.46
578 1236 2.231235 GCACAAGGGTGTTTATGAAGGG 59.769 50.000 0.00 0.00 46.95 3.95
579 1237 3.761897 CACAAGGGTGTTTATGAAGGGA 58.238 45.455 0.00 0.00 40.24 4.20
580 1238 4.344104 CACAAGGGTGTTTATGAAGGGAT 58.656 43.478 0.00 0.00 40.24 3.85
581 1239 4.772100 CACAAGGGTGTTTATGAAGGGATT 59.228 41.667 0.00 0.00 40.24 3.01
582 1240 5.949354 CACAAGGGTGTTTATGAAGGGATTA 59.051 40.000 0.00 0.00 40.24 1.75
583 1241 6.095440 CACAAGGGTGTTTATGAAGGGATTAG 59.905 42.308 0.00 0.00 40.24 1.73
584 1242 6.187682 CAAGGGTGTTTATGAAGGGATTAGT 58.812 40.000 0.00 0.00 0.00 2.24
585 1243 6.402981 AGGGTGTTTATGAAGGGATTAGTT 57.597 37.500 0.00 0.00 0.00 2.24
586 1244 7.519347 AGGGTGTTTATGAAGGGATTAGTTA 57.481 36.000 0.00 0.00 0.00 2.24
587 1245 8.114301 AGGGTGTTTATGAAGGGATTAGTTAT 57.886 34.615 0.00 0.00 0.00 1.89
588 1246 7.998964 AGGGTGTTTATGAAGGGATTAGTTATG 59.001 37.037 0.00 0.00 0.00 1.90
589 1247 7.230712 GGGTGTTTATGAAGGGATTAGTTATGG 59.769 40.741 0.00 0.00 0.00 2.74
590 1248 7.996644 GGTGTTTATGAAGGGATTAGTTATGGA 59.003 37.037 0.00 0.00 0.00 3.41
591 1249 9.403583 GTGTTTATGAAGGGATTAGTTATGGAA 57.596 33.333 0.00 0.00 0.00 3.53
592 1250 9.983024 TGTTTATGAAGGGATTAGTTATGGAAA 57.017 29.630 0.00 0.00 0.00 3.13
597 1255 8.618240 TGAAGGGATTAGTTATGGAAAGTAGA 57.382 34.615 0.00 0.00 0.00 2.59
598 1256 9.225682 TGAAGGGATTAGTTATGGAAAGTAGAT 57.774 33.333 0.00 0.00 0.00 1.98
608 1266 9.682465 AGTTATGGAAAGTAGATTTTTACTCCC 57.318 33.333 0.00 0.00 32.84 4.30
609 1267 9.457436 GTTATGGAAAGTAGATTTTTACTCCCA 57.543 33.333 8.62 8.62 38.98 4.37
612 1270 8.575649 TGGAAAGTAGATTTTTACTCCCATTC 57.424 34.615 0.00 0.00 34.33 2.67
613 1271 7.614192 TGGAAAGTAGATTTTTACTCCCATTCC 59.386 37.037 0.00 0.00 37.35 3.01
614 1272 7.068348 GGAAAGTAGATTTTTACTCCCATTCCC 59.932 40.741 0.00 0.00 34.09 3.97
615 1273 6.910259 AGTAGATTTTTACTCCCATTCCCT 57.090 37.500 0.00 0.00 0.00 4.20
616 1274 7.285340 AGTAGATTTTTACTCCCATTCCCTT 57.715 36.000 0.00 0.00 0.00 3.95
617 1275 7.119387 AGTAGATTTTTACTCCCATTCCCTTG 58.881 38.462 0.00 0.00 0.00 3.61
618 1276 5.903923 AGATTTTTACTCCCATTCCCTTGT 58.096 37.500 0.00 0.00 0.00 3.16
619 1277 6.322931 AGATTTTTACTCCCATTCCCTTGTT 58.677 36.000 0.00 0.00 0.00 2.83
620 1278 6.787458 AGATTTTTACTCCCATTCCCTTGTTT 59.213 34.615 0.00 0.00 0.00 2.83
621 1279 5.799827 TTTTACTCCCATTCCCTTGTTTG 57.200 39.130 0.00 0.00 0.00 2.93
622 1280 2.309136 ACTCCCATTCCCTTGTTTGG 57.691 50.000 0.00 0.00 0.00 3.28
623 1281 1.503347 ACTCCCATTCCCTTGTTTGGT 59.497 47.619 0.00 0.00 0.00 3.67
624 1282 2.719705 ACTCCCATTCCCTTGTTTGGTA 59.280 45.455 0.00 0.00 0.00 3.25
625 1283 3.336694 ACTCCCATTCCCTTGTTTGGTAT 59.663 43.478 0.00 0.00 0.00 2.73
626 1284 4.542525 ACTCCCATTCCCTTGTTTGGTATA 59.457 41.667 0.00 0.00 0.00 1.47
627 1285 5.195756 ACTCCCATTCCCTTGTTTGGTATAT 59.804 40.000 0.00 0.00 0.00 0.86
628 1286 5.454062 TCCCATTCCCTTGTTTGGTATATG 58.546 41.667 0.00 0.00 0.00 1.78
629 1287 5.194740 TCCCATTCCCTTGTTTGGTATATGA 59.805 40.000 0.00 0.00 0.00 2.15
630 1288 6.077322 CCCATTCCCTTGTTTGGTATATGAT 58.923 40.000 0.00 0.00 0.00 2.45
631 1289 6.015180 CCCATTCCCTTGTTTGGTATATGATG 60.015 42.308 0.00 0.00 0.00 3.07
632 1290 6.015180 CCATTCCCTTGTTTGGTATATGATGG 60.015 42.308 0.00 0.00 0.00 3.51
633 1291 5.060427 TCCCTTGTTTGGTATATGATGGG 57.940 43.478 0.00 0.00 0.00 4.00
634 1292 4.729370 TCCCTTGTTTGGTATATGATGGGA 59.271 41.667 0.00 0.00 37.65 4.37
635 1293 5.194740 TCCCTTGTTTGGTATATGATGGGAA 59.805 40.000 0.00 0.00 37.12 3.97
636 1294 6.077322 CCCTTGTTTGGTATATGATGGGAAT 58.923 40.000 0.00 0.00 33.14 3.01
637 1295 6.554605 CCCTTGTTTGGTATATGATGGGAATT 59.445 38.462 0.00 0.00 33.14 2.17
638 1296 7.728083 CCCTTGTTTGGTATATGATGGGAATTA 59.272 37.037 0.00 0.00 33.14 1.40
639 1297 8.796475 CCTTGTTTGGTATATGATGGGAATTAG 58.204 37.037 0.00 0.00 0.00 1.73
640 1298 7.759489 TGTTTGGTATATGATGGGAATTAGC 57.241 36.000 0.00 0.00 0.00 3.09
641 1299 6.429692 TGTTTGGTATATGATGGGAATTAGCG 59.570 38.462 0.00 0.00 0.00 4.26
642 1300 5.755409 TGGTATATGATGGGAATTAGCGT 57.245 39.130 0.00 0.00 0.00 5.07
643 1301 5.487433 TGGTATATGATGGGAATTAGCGTG 58.513 41.667 0.00 0.00 0.00 5.34
644 1302 4.876107 GGTATATGATGGGAATTAGCGTGG 59.124 45.833 0.00 0.00 0.00 4.94
645 1303 2.276732 ATGATGGGAATTAGCGTGGG 57.723 50.000 0.00 0.00 0.00 4.61
646 1304 1.208706 TGATGGGAATTAGCGTGGGA 58.791 50.000 0.00 0.00 0.00 4.37
647 1305 1.774254 TGATGGGAATTAGCGTGGGAT 59.226 47.619 0.00 0.00 0.00 3.85
648 1306 2.976185 TGATGGGAATTAGCGTGGGATA 59.024 45.455 0.00 0.00 0.00 2.59
649 1307 3.392947 TGATGGGAATTAGCGTGGGATAA 59.607 43.478 0.00 0.00 0.00 1.75
650 1308 3.935818 TGGGAATTAGCGTGGGATAAA 57.064 42.857 0.00 0.00 0.00 1.40
651 1309 4.237976 TGGGAATTAGCGTGGGATAAAA 57.762 40.909 0.00 0.00 0.00 1.52
652 1310 3.949113 TGGGAATTAGCGTGGGATAAAAC 59.051 43.478 0.00 0.00 0.00 2.43
653 1311 4.204799 GGGAATTAGCGTGGGATAAAACT 58.795 43.478 0.00 0.00 0.00 2.66
654 1312 4.275196 GGGAATTAGCGTGGGATAAAACTC 59.725 45.833 0.00 0.00 0.00 3.01
655 1313 5.123936 GGAATTAGCGTGGGATAAAACTCT 58.876 41.667 0.00 0.00 0.00 3.24
656 1314 5.007724 GGAATTAGCGTGGGATAAAACTCTG 59.992 44.000 0.00 0.00 0.00 3.35
657 1315 1.739067 AGCGTGGGATAAAACTCTGC 58.261 50.000 0.00 0.00 0.00 4.26
658 1316 1.279271 AGCGTGGGATAAAACTCTGCT 59.721 47.619 0.00 0.00 0.00 4.24
659 1317 2.084546 GCGTGGGATAAAACTCTGCTT 58.915 47.619 0.00 0.00 0.00 3.91
660 1318 3.055385 AGCGTGGGATAAAACTCTGCTTA 60.055 43.478 0.00 0.00 0.00 3.09
661 1319 3.063588 GCGTGGGATAAAACTCTGCTTAC 59.936 47.826 0.00 0.00 0.00 2.34
662 1320 3.306166 CGTGGGATAAAACTCTGCTTACG 59.694 47.826 0.00 0.00 0.00 3.18
663 1321 4.501071 GTGGGATAAAACTCTGCTTACGA 58.499 43.478 0.00 0.00 0.00 3.43
664 1322 4.933400 GTGGGATAAAACTCTGCTTACGAA 59.067 41.667 0.00 0.00 0.00 3.85
665 1323 5.585047 GTGGGATAAAACTCTGCTTACGAAT 59.415 40.000 0.00 0.00 0.00 3.34
666 1324 6.093633 GTGGGATAAAACTCTGCTTACGAATT 59.906 38.462 0.00 0.00 0.00 2.17
667 1325 7.279313 GTGGGATAAAACTCTGCTTACGAATTA 59.721 37.037 0.00 0.00 0.00 1.40
668 1326 7.825270 TGGGATAAAACTCTGCTTACGAATTAA 59.175 33.333 0.00 0.00 0.00 1.40
669 1327 8.121086 GGGATAAAACTCTGCTTACGAATTAAC 58.879 37.037 0.00 0.00 0.00 2.01
670 1328 8.662141 GGATAAAACTCTGCTTACGAATTAACA 58.338 33.333 0.00 0.00 0.00 2.41
671 1329 9.690434 GATAAAACTCTGCTTACGAATTAACAG 57.310 33.333 0.00 0.00 0.00 3.16
672 1330 6.481954 AAACTCTGCTTACGAATTAACAGG 57.518 37.500 0.00 0.00 0.00 4.00
673 1331 4.504858 ACTCTGCTTACGAATTAACAGGG 58.495 43.478 0.00 0.00 31.05 4.45
674 1332 4.020485 ACTCTGCTTACGAATTAACAGGGT 60.020 41.667 0.00 0.00 32.27 4.34
675 1333 5.186409 ACTCTGCTTACGAATTAACAGGGTA 59.814 40.000 0.00 0.00 33.91 3.69
676 1334 5.413499 TCTGCTTACGAATTAACAGGGTAC 58.587 41.667 0.00 0.00 0.00 3.34
692 1350 3.859061 GGTACCCCTGGGAAGAAATAG 57.141 52.381 16.20 0.00 38.96 1.73
693 1351 2.442126 GGTACCCCTGGGAAGAAATAGG 59.558 54.545 16.20 0.00 38.96 2.57
694 1352 2.378308 ACCCCTGGGAAGAAATAGGT 57.622 50.000 16.20 0.00 38.96 3.08
695 1353 1.923148 ACCCCTGGGAAGAAATAGGTG 59.077 52.381 16.20 0.00 38.96 4.00
696 1354 1.215423 CCCCTGGGAAGAAATAGGTGG 59.785 57.143 16.20 0.00 37.50 4.61
697 1355 1.215423 CCCTGGGAAGAAATAGGTGGG 59.785 57.143 7.01 0.00 0.00 4.61
698 1356 2.205342 CCTGGGAAGAAATAGGTGGGA 58.795 52.381 0.00 0.00 0.00 4.37
699 1357 2.580783 CCTGGGAAGAAATAGGTGGGAA 59.419 50.000 0.00 0.00 0.00 3.97
700 1358 3.205282 CCTGGGAAGAAATAGGTGGGAAT 59.795 47.826 0.00 0.00 0.00 3.01
701 1359 4.326132 CCTGGGAAGAAATAGGTGGGAATT 60.326 45.833 0.00 0.00 0.00 2.17
702 1360 4.609301 TGGGAAGAAATAGGTGGGAATTG 58.391 43.478 0.00 0.00 0.00 2.32
703 1361 3.960755 GGGAAGAAATAGGTGGGAATTGG 59.039 47.826 0.00 0.00 0.00 3.16
704 1362 3.384789 GGAAGAAATAGGTGGGAATTGGC 59.615 47.826 0.00 0.00 0.00 4.52
705 1363 4.281657 GAAGAAATAGGTGGGAATTGGCT 58.718 43.478 0.00 0.00 0.00 4.75
706 1364 4.337264 AGAAATAGGTGGGAATTGGCTT 57.663 40.909 0.00 0.00 0.00 4.35
707 1365 4.281657 AGAAATAGGTGGGAATTGGCTTC 58.718 43.478 0.00 0.00 0.00 3.86
717 1375 2.095461 GAATTGGCTTCCTCAACTCCC 58.905 52.381 0.00 0.00 0.00 4.30
718 1376 1.075601 ATTGGCTTCCTCAACTCCCA 58.924 50.000 0.00 0.00 0.00 4.37
719 1377 1.075601 TTGGCTTCCTCAACTCCCAT 58.924 50.000 0.00 0.00 0.00 4.00
720 1378 1.075601 TGGCTTCCTCAACTCCCATT 58.924 50.000 0.00 0.00 0.00 3.16
721 1379 1.004745 TGGCTTCCTCAACTCCCATTC 59.995 52.381 0.00 0.00 0.00 2.67
722 1380 1.683319 GGCTTCCTCAACTCCCATTCC 60.683 57.143 0.00 0.00 0.00 3.01
723 1381 1.683319 GCTTCCTCAACTCCCATTCCC 60.683 57.143 0.00 0.00 0.00 3.97
724 1382 0.999712 TTCCTCAACTCCCATTCCCC 59.000 55.000 0.00 0.00 0.00 4.81
725 1383 0.121197 TCCTCAACTCCCATTCCCCT 59.879 55.000 0.00 0.00 0.00 4.79
726 1384 1.002857 CCTCAACTCCCATTCCCCTT 58.997 55.000 0.00 0.00 0.00 3.95
727 1385 1.064389 CCTCAACTCCCATTCCCCTTC 60.064 57.143 0.00 0.00 0.00 3.46
728 1386 0.999712 TCAACTCCCATTCCCCTTCC 59.000 55.000 0.00 0.00 0.00 3.46
729 1387 1.002857 CAACTCCCATTCCCCTTCCT 58.997 55.000 0.00 0.00 0.00 3.36
730 1388 2.205342 CAACTCCCATTCCCCTTCCTA 58.795 52.381 0.00 0.00 0.00 2.94
731 1389 1.894699 ACTCCCATTCCCCTTCCTAC 58.105 55.000 0.00 0.00 0.00 3.18
732 1390 1.369983 ACTCCCATTCCCCTTCCTACT 59.630 52.381 0.00 0.00 0.00 2.57
733 1391 2.226170 ACTCCCATTCCCCTTCCTACTT 60.226 50.000 0.00 0.00 0.00 2.24
734 1392 3.014807 ACTCCCATTCCCCTTCCTACTTA 59.985 47.826 0.00 0.00 0.00 2.24
735 1393 4.045022 CTCCCATTCCCCTTCCTACTTAA 58.955 47.826 0.00 0.00 0.00 1.85
736 1394 4.450348 TCCCATTCCCCTTCCTACTTAAA 58.550 43.478 0.00 0.00 0.00 1.52
737 1395 4.228895 TCCCATTCCCCTTCCTACTTAAAC 59.771 45.833 0.00 0.00 0.00 2.01
738 1396 4.229812 CCCATTCCCCTTCCTACTTAAACT 59.770 45.833 0.00 0.00 0.00 2.66
739 1397 5.437946 CCATTCCCCTTCCTACTTAAACTC 58.562 45.833 0.00 0.00 0.00 3.01
740 1398 5.437946 CATTCCCCTTCCTACTTAAACTCC 58.562 45.833 0.00 0.00 0.00 3.85
741 1399 3.457836 TCCCCTTCCTACTTAAACTCCC 58.542 50.000 0.00 0.00 0.00 4.30
742 1400 3.181392 TCCCCTTCCTACTTAAACTCCCA 60.181 47.826 0.00 0.00 0.00 4.37
743 1401 3.786450 CCCCTTCCTACTTAAACTCCCAT 59.214 47.826 0.00 0.00 0.00 4.00
744 1402 4.229812 CCCCTTCCTACTTAAACTCCCATT 59.770 45.833 0.00 0.00 0.00 3.16
745 1403 5.437946 CCCTTCCTACTTAAACTCCCATTC 58.562 45.833 0.00 0.00 0.00 2.67
746 1404 5.437946 CCTTCCTACTTAAACTCCCATTCC 58.562 45.833 0.00 0.00 0.00 3.01
747 1405 5.437946 CTTCCTACTTAAACTCCCATTCCC 58.562 45.833 0.00 0.00 0.00 3.97
748 1406 4.706616 TCCTACTTAAACTCCCATTCCCT 58.293 43.478 0.00 0.00 0.00 4.20
749 1407 4.720273 TCCTACTTAAACTCCCATTCCCTC 59.280 45.833 0.00 0.00 0.00 4.30
750 1408 4.722279 CCTACTTAAACTCCCATTCCCTCT 59.278 45.833 0.00 0.00 0.00 3.69
751 1409 5.903589 CCTACTTAAACTCCCATTCCCTCTA 59.096 44.000 0.00 0.00 0.00 2.43
752 1410 6.386050 CCTACTTAAACTCCCATTCCCTCTAA 59.614 42.308 0.00 0.00 0.00 2.10
753 1411 6.910259 ACTTAAACTCCCATTCCCTCTAAT 57.090 37.500 0.00 0.00 0.00 1.73
754 1412 6.901300 ACTTAAACTCCCATTCCCTCTAATC 58.099 40.000 0.00 0.00 0.00 1.75
755 1413 6.447084 ACTTAAACTCCCATTCCCTCTAATCA 59.553 38.462 0.00 0.00 0.00 2.57
756 1414 5.796502 AAACTCCCATTCCCTCTAATCAA 57.203 39.130 0.00 0.00 0.00 2.57
757 1415 5.796502 AACTCCCATTCCCTCTAATCAAA 57.203 39.130 0.00 0.00 0.00 2.69
758 1416 5.379706 ACTCCCATTCCCTCTAATCAAAG 57.620 43.478 0.00 0.00 0.00 2.77
759 1417 5.039645 ACTCCCATTCCCTCTAATCAAAGA 58.960 41.667 0.00 0.00 0.00 2.52
760 1418 5.131809 ACTCCCATTCCCTCTAATCAAAGAG 59.868 44.000 0.00 0.00 42.30 2.85
761 1419 5.039645 TCCCATTCCCTCTAATCAAAGAGT 58.960 41.667 0.63 0.00 41.27 3.24
762 1420 5.104360 TCCCATTCCCTCTAATCAAAGAGTG 60.104 44.000 0.63 0.00 41.27 3.51
763 1421 5.128919 CCATTCCCTCTAATCAAAGAGTGG 58.871 45.833 0.63 2.19 41.27 4.00
764 1422 5.104360 CCATTCCCTCTAATCAAAGAGTGGA 60.104 44.000 0.00 5.23 41.27 4.02
765 1423 5.422214 TTCCCTCTAATCAAAGAGTGGAC 57.578 43.478 9.31 0.00 40.08 4.02
766 1424 4.689062 TCCCTCTAATCAAAGAGTGGACT 58.311 43.478 6.87 0.00 41.27 3.85
767 1425 5.094387 TCCCTCTAATCAAAGAGTGGACTT 58.906 41.667 6.87 0.00 41.27 3.01
768 1426 5.548056 TCCCTCTAATCAAAGAGTGGACTTT 59.452 40.000 6.87 0.00 41.27 2.66
769 1427 6.044404 TCCCTCTAATCAAAGAGTGGACTTTT 59.956 38.462 6.87 0.00 41.27 2.27
770 1428 7.236847 TCCCTCTAATCAAAGAGTGGACTTTTA 59.763 37.037 6.87 0.00 41.27 1.52
771 1429 7.883311 CCCTCTAATCAAAGAGTGGACTTTTAA 59.117 37.037 0.00 0.00 41.27 1.52
772 1430 9.454859 CCTCTAATCAAAGAGTGGACTTTTAAT 57.545 33.333 0.00 0.00 41.27 1.40
776 1434 7.929941 ATCAAAGAGTGGACTTTTAATCTCC 57.070 36.000 0.00 0.00 37.91 3.71
777 1435 7.079451 TCAAAGAGTGGACTTTTAATCTCCT 57.921 36.000 0.00 0.00 37.91 3.69
778 1436 7.162082 TCAAAGAGTGGACTTTTAATCTCCTC 58.838 38.462 0.00 0.00 37.91 3.71
779 1437 6.688073 AAGAGTGGACTTTTAATCTCCTCA 57.312 37.500 0.00 0.00 0.00 3.86
780 1438 6.043854 AGAGTGGACTTTTAATCTCCTCAC 57.956 41.667 0.00 0.00 0.00 3.51
781 1439 5.046231 AGAGTGGACTTTTAATCTCCTCACC 60.046 44.000 0.00 0.00 0.00 4.02
782 1440 4.019231 AGTGGACTTTTAATCTCCTCACCC 60.019 45.833 0.00 0.00 0.00 4.61
783 1441 3.265995 TGGACTTTTAATCTCCTCACCCC 59.734 47.826 0.00 0.00 0.00 4.95
784 1442 3.523972 GGACTTTTAATCTCCTCACCCCT 59.476 47.826 0.00 0.00 0.00 4.79
785 1443 4.384318 GGACTTTTAATCTCCTCACCCCTC 60.384 50.000 0.00 0.00 0.00 4.30
786 1444 4.175962 ACTTTTAATCTCCTCACCCCTCA 58.824 43.478 0.00 0.00 0.00 3.86
787 1445 4.601857 ACTTTTAATCTCCTCACCCCTCAA 59.398 41.667 0.00 0.00 0.00 3.02
788 1446 4.569719 TTTAATCTCCTCACCCCTCAAC 57.430 45.455 0.00 0.00 0.00 3.18
789 1447 2.350863 AATCTCCTCACCCCTCAACT 57.649 50.000 0.00 0.00 0.00 3.16
790 1448 1.872773 ATCTCCTCACCCCTCAACTC 58.127 55.000 0.00 0.00 0.00 3.01
791 1449 0.252284 TCTCCTCACCCCTCAACTCC 60.252 60.000 0.00 0.00 0.00 3.85
792 1450 1.229529 TCCTCACCCCTCAACTCCC 60.230 63.158 0.00 0.00 0.00 4.30
793 1451 2.660064 CCTCACCCCTCAACTCCCG 61.660 68.421 0.00 0.00 0.00 5.14
794 1452 1.913762 CTCACCCCTCAACTCCCGT 60.914 63.158 0.00 0.00 0.00 5.28
795 1453 1.460689 TCACCCCTCAACTCCCGTT 60.461 57.895 0.00 0.00 0.00 4.44
796 1454 1.003718 CACCCCTCAACTCCCGTTC 60.004 63.158 0.00 0.00 0.00 3.95
797 1455 2.222013 ACCCCTCAACTCCCGTTCC 61.222 63.158 0.00 0.00 0.00 3.62
798 1456 2.669240 CCCTCAACTCCCGTTCCC 59.331 66.667 0.00 0.00 0.00 3.97
799 1457 2.669240 CCTCAACTCCCGTTCCCC 59.331 66.667 0.00 0.00 0.00 4.81
800 1458 2.221299 CCTCAACTCCCGTTCCCCA 61.221 63.158 0.00 0.00 0.00 4.96
801 1459 1.562672 CCTCAACTCCCGTTCCCCAT 61.563 60.000 0.00 0.00 0.00 4.00
802 1460 0.107654 CTCAACTCCCGTTCCCCATC 60.108 60.000 0.00 0.00 0.00 3.51
803 1461 0.546747 TCAACTCCCGTTCCCCATCT 60.547 55.000 0.00 0.00 0.00 2.90
804 1462 0.107654 CAACTCCCGTTCCCCATCTC 60.108 60.000 0.00 0.00 0.00 2.75
805 1463 1.614241 AACTCCCGTTCCCCATCTCG 61.614 60.000 0.00 0.00 0.00 4.04
806 1464 1.756950 CTCCCGTTCCCCATCTCGA 60.757 63.158 0.00 0.00 0.00 4.04
807 1465 1.305465 TCCCGTTCCCCATCTCGAA 60.305 57.895 0.00 0.00 0.00 3.71
808 1466 0.689745 TCCCGTTCCCCATCTCGAAT 60.690 55.000 0.00 0.00 0.00 3.34
809 1467 0.180406 CCCGTTCCCCATCTCGAATT 59.820 55.000 0.00 0.00 0.00 2.17
810 1468 1.583054 CCGTTCCCCATCTCGAATTC 58.417 55.000 0.00 0.00 0.00 2.17
811 1469 1.583054 CGTTCCCCATCTCGAATTCC 58.417 55.000 0.00 0.00 0.00 3.01
812 1470 1.810412 CGTTCCCCATCTCGAATTCCC 60.810 57.143 0.00 0.00 0.00 3.97
813 1471 0.843984 TTCCCCATCTCGAATTCCCC 59.156 55.000 0.00 0.00 0.00 4.81
814 1472 1.060163 TCCCCATCTCGAATTCCCCC 61.060 60.000 0.00 0.00 0.00 5.40
815 1473 1.071471 CCCATCTCGAATTCCCCCG 59.929 63.158 0.00 0.00 0.00 5.73
816 1474 1.407656 CCCATCTCGAATTCCCCCGA 61.408 60.000 0.00 0.00 0.00 5.14
817 1475 0.468226 CCATCTCGAATTCCCCCGAA 59.532 55.000 0.00 0.00 34.17 4.30
818 1476 1.583054 CATCTCGAATTCCCCCGAAC 58.417 55.000 0.00 0.00 34.17 3.95
819 1477 0.468648 ATCTCGAATTCCCCCGAACC 59.531 55.000 0.00 0.00 34.17 3.62
820 1478 0.905809 TCTCGAATTCCCCCGAACCA 60.906 55.000 0.00 0.00 34.17 3.67
821 1479 0.035820 CTCGAATTCCCCCGAACCAA 60.036 55.000 0.00 0.00 34.17 3.67
822 1480 0.400975 TCGAATTCCCCCGAACCAAA 59.599 50.000 0.00 0.00 0.00 3.28
823 1481 0.524414 CGAATTCCCCCGAACCAAAC 59.476 55.000 0.00 0.00 0.00 2.93
824 1482 1.623163 GAATTCCCCCGAACCAAACA 58.377 50.000 0.00 0.00 0.00 2.83
825 1483 1.271379 GAATTCCCCCGAACCAAACAC 59.729 52.381 0.00 0.00 0.00 3.32
826 1484 0.891904 ATTCCCCCGAACCAAACACG 60.892 55.000 0.00 0.00 0.00 4.49
827 1485 3.666253 CCCCCGAACCAAACACGC 61.666 66.667 0.00 0.00 0.00 5.34
828 1486 2.593436 CCCCGAACCAAACACGCT 60.593 61.111 0.00 0.00 0.00 5.07
829 1487 2.637025 CCCGAACCAAACACGCTG 59.363 61.111 0.00 0.00 0.00 5.18
830 1488 2.184167 CCCGAACCAAACACGCTGT 61.184 57.895 0.00 0.00 0.00 4.40
867 1525 7.769220 ACTCTACTTTCGATTCCGATAAGAAA 58.231 34.615 0.00 0.00 45.10 2.52
868 1526 8.414778 ACTCTACTTTCGATTCCGATAAGAAAT 58.585 33.333 0.00 0.00 45.10 2.17
903 1567 1.078637 TCGGACACGATCGGAGACT 60.079 57.895 20.98 0.00 45.59 3.24
904 1568 1.088340 TCGGACACGATCGGAGACTC 61.088 60.000 20.98 6.05 45.59 3.36
920 1610 0.646381 ACTCGACTCGAATCGACTCG 59.354 55.000 22.24 22.24 45.84 4.18
959 1649 3.181483 GGCAGCCAAAACTATGGATTCTG 60.181 47.826 6.55 0.00 43.54 3.02
1187 1911 2.271173 CCTGCTGCTCCTGATGCA 59.729 61.111 0.00 0.00 38.81 3.96
1284 2011 1.673920 GAAGGCAAGTTGTTCGTTGGA 59.326 47.619 4.48 0.00 0.00 3.53
1292 2019 1.070175 GTTGTTCGTTGGATCACACGG 60.070 52.381 14.03 0.00 0.00 4.94
1321 2048 4.299547 TTGCTGCGCTCGACTGGT 62.300 61.111 9.73 0.00 0.00 4.00
1378 2114 0.901580 GGTGGTGGTCTCTCCGGTAA 60.902 60.000 0.00 0.00 39.52 2.85
1407 2143 4.827835 CCTAATCCTATCCAGACAGTCGAA 59.172 45.833 0.00 0.00 0.00 3.71
1411 2147 4.278310 TCCTATCCAGACAGTCGAATTCA 58.722 43.478 6.22 0.00 0.00 2.57
1598 2334 2.288457 GCGAGCTCTATGGTCTTATGCA 60.288 50.000 12.85 0.00 40.75 3.96
1599 2335 3.800261 GCGAGCTCTATGGTCTTATGCAA 60.800 47.826 12.85 0.00 40.75 4.08
1601 2337 4.061596 GAGCTCTATGGTCTTATGCAACC 58.938 47.826 6.43 0.00 39.86 3.77
2112 2851 1.685765 TGATGGGGTGGAGAGGACG 60.686 63.158 0.00 0.00 0.00 4.79
2167 2906 2.580815 GGCTTTGCCCTCCATTGC 59.419 61.111 0.00 0.00 44.06 3.56
2494 3234 4.259889 GTTGCAAAAACACCGAAAAATCG 58.740 39.130 0.00 0.00 0.00 3.34
2650 3409 1.513158 CAATCAGCTCCTCGTCCGT 59.487 57.895 0.00 0.00 0.00 4.69
2814 3573 2.126502 CCGCCGTCAATTTGTGGC 60.127 61.111 19.03 19.03 44.09 5.01
2850 3609 1.729470 CGTCCACTCGCTGGCTCTAT 61.729 60.000 0.00 0.00 40.39 1.98
2882 3642 2.006991 GTCCCCTAGGGTGGGCATT 61.007 63.158 26.66 0.00 45.78 3.56
3036 3797 1.167851 CGGTGCATTGATGAACTGGT 58.832 50.000 3.36 0.00 38.76 4.00
3056 3817 0.249398 GGAAGCGAGCTACAGGGAAA 59.751 55.000 0.00 0.00 0.00 3.13
3148 3909 2.292267 GCCACAGAGAGAGAGAGAGAG 58.708 57.143 0.00 0.00 0.00 3.20
3149 3910 2.092968 GCCACAGAGAGAGAGAGAGAGA 60.093 54.545 0.00 0.00 0.00 3.10
3150 3911 3.801698 CCACAGAGAGAGAGAGAGAGAG 58.198 54.545 0.00 0.00 0.00 3.20
3151 3912 3.452264 CCACAGAGAGAGAGAGAGAGAGA 59.548 52.174 0.00 0.00 0.00 3.10
3152 3913 4.442612 CCACAGAGAGAGAGAGAGAGAGAG 60.443 54.167 0.00 0.00 0.00 3.20
3153 3914 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
3154 3915 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
3155 3916 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
3156 3917 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
3157 3918 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3158 3919 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3159 3920 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3160 3921 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3161 3922 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3162 3923 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3163 3924 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3164 3925 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3165 3926 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3166 3927 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3167 3928 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3168 3929 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3169 3930 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3170 3931 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3171 3932 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3172 3933 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.434641 TCGTGACTAGACAGTTCGTAAGG 59.565 47.826 0.00 0.00 34.21 2.69
77 78 0.673985 CAGGTCACGTGAGAGTTGGA 59.326 55.000 20.73 0.00 0.00 3.53
101 102 8.734386 ACTTAATAAGATCCTTGCAGTTTGAAG 58.266 33.333 7.06 0.00 0.00 3.02
301 502 2.549329 TGTACGTTACGACTCAGCTTCA 59.451 45.455 13.03 0.00 0.00 3.02
414 1072 2.749621 CCTAACCAAAGCATGTCAGGAC 59.250 50.000 0.00 0.00 0.00 3.85
428 1086 2.606519 ACTGCGGCCTCCTAACCA 60.607 61.111 0.00 0.00 0.00 3.67
478 1136 0.035881 CAGAGACAGCAAAGCAGGGA 59.964 55.000 0.00 0.00 0.00 4.20
514 1172 1.663161 GCGCTTACCAAACAAGCTGTC 60.663 52.381 0.00 0.00 45.00 3.51
515 1173 0.310854 GCGCTTACCAAACAAGCTGT 59.689 50.000 0.00 0.00 45.00 4.40
516 1174 0.593128 AGCGCTTACCAAACAAGCTG 59.407 50.000 2.64 1.30 45.00 4.24
517 1175 1.318576 AAGCGCTTACCAAACAAGCT 58.681 45.000 23.72 0.00 45.00 3.74
518 1176 2.414161 CCTAAGCGCTTACCAAACAAGC 60.414 50.000 25.53 0.00 43.99 4.01
519 1177 2.414161 GCCTAAGCGCTTACCAAACAAG 60.414 50.000 25.53 14.79 0.00 3.16
520 1178 1.538075 GCCTAAGCGCTTACCAAACAA 59.462 47.619 25.53 5.25 0.00 2.83
521 1179 1.161843 GCCTAAGCGCTTACCAAACA 58.838 50.000 25.53 6.04 0.00 2.83
522 1180 1.130561 CTGCCTAAGCGCTTACCAAAC 59.869 52.381 25.53 13.11 44.31 2.93
523 1181 1.448985 CTGCCTAAGCGCTTACCAAA 58.551 50.000 25.53 7.61 44.31 3.28
524 1182 0.392461 CCTGCCTAAGCGCTTACCAA 60.392 55.000 25.53 12.36 44.31 3.67
525 1183 1.220749 CCTGCCTAAGCGCTTACCA 59.779 57.895 25.53 21.70 44.31 3.25
526 1184 1.523938 CCCTGCCTAAGCGCTTACC 60.524 63.158 25.53 18.58 44.31 2.85
527 1185 0.107848 TTCCCTGCCTAAGCGCTTAC 60.108 55.000 25.53 17.11 44.31 2.34
528 1186 0.616371 TTTCCCTGCCTAAGCGCTTA 59.384 50.000 27.17 27.17 44.31 3.09
529 1187 0.034089 ATTTCCCTGCCTAAGCGCTT 60.034 50.000 27.97 27.97 44.31 4.68
530 1188 0.749454 CATTTCCCTGCCTAAGCGCT 60.749 55.000 2.64 2.64 44.31 5.92
531 1189 0.748005 TCATTTCCCTGCCTAAGCGC 60.748 55.000 0.00 0.00 44.31 5.92
532 1190 1.134401 TCTCATTTCCCTGCCTAAGCG 60.134 52.381 0.00 0.00 44.31 4.68
533 1191 2.092699 ACTCTCATTTCCCTGCCTAAGC 60.093 50.000 0.00 0.00 40.48 3.09
534 1192 3.922171 ACTCTCATTTCCCTGCCTAAG 57.078 47.619 0.00 0.00 0.00 2.18
535 1193 4.335416 CAAACTCTCATTTCCCTGCCTAA 58.665 43.478 0.00 0.00 0.00 2.69
536 1194 3.873801 GCAAACTCTCATTTCCCTGCCTA 60.874 47.826 0.00 0.00 0.00 3.93
537 1195 2.800250 CAAACTCTCATTTCCCTGCCT 58.200 47.619 0.00 0.00 0.00 4.75
538 1196 1.203287 GCAAACTCTCATTTCCCTGCC 59.797 52.381 0.00 0.00 0.00 4.85
539 1197 1.888512 TGCAAACTCTCATTTCCCTGC 59.111 47.619 0.00 0.00 0.00 4.85
540 1198 2.886523 TGTGCAAACTCTCATTTCCCTG 59.113 45.455 0.00 0.00 0.00 4.45
541 1199 3.228188 TGTGCAAACTCTCATTTCCCT 57.772 42.857 0.00 0.00 0.00 4.20
542 1200 3.305608 CCTTGTGCAAACTCTCATTTCCC 60.306 47.826 0.00 0.00 0.00 3.97
543 1201 3.305608 CCCTTGTGCAAACTCTCATTTCC 60.306 47.826 0.00 0.00 0.00 3.13
544 1202 3.319122 ACCCTTGTGCAAACTCTCATTTC 59.681 43.478 0.00 0.00 0.00 2.17
545 1203 3.068590 CACCCTTGTGCAAACTCTCATTT 59.931 43.478 0.00 0.00 35.31 2.32
546 1204 2.624838 CACCCTTGTGCAAACTCTCATT 59.375 45.455 0.00 0.00 35.31 2.57
547 1205 2.233271 CACCCTTGTGCAAACTCTCAT 58.767 47.619 0.00 0.00 35.31 2.90
548 1206 1.064758 ACACCCTTGTGCAAACTCTCA 60.065 47.619 0.00 0.00 46.86 3.27
549 1207 1.680338 ACACCCTTGTGCAAACTCTC 58.320 50.000 0.00 0.00 46.86 3.20
550 1208 2.143876 AACACCCTTGTGCAAACTCT 57.856 45.000 0.00 0.00 46.86 3.24
551 1209 2.959507 AAACACCCTTGTGCAAACTC 57.040 45.000 0.00 0.00 46.86 3.01
552 1210 3.957497 TCATAAACACCCTTGTGCAAACT 59.043 39.130 0.00 0.00 46.86 2.66
553 1211 4.314740 TCATAAACACCCTTGTGCAAAC 57.685 40.909 0.00 0.00 46.86 2.93
554 1212 4.202202 CCTTCATAAACACCCTTGTGCAAA 60.202 41.667 0.00 0.00 46.86 3.68
555 1213 3.320541 CCTTCATAAACACCCTTGTGCAA 59.679 43.478 0.00 0.00 46.86 4.08
556 1214 2.890311 CCTTCATAAACACCCTTGTGCA 59.110 45.455 0.00 0.00 46.86 4.57
557 1215 2.231235 CCCTTCATAAACACCCTTGTGC 59.769 50.000 0.00 0.00 46.86 4.57
559 1217 4.675063 ATCCCTTCATAAACACCCTTGT 57.325 40.909 0.00 0.00 37.67 3.16
560 1218 6.187682 ACTAATCCCTTCATAAACACCCTTG 58.812 40.000 0.00 0.00 0.00 3.61
561 1219 6.402981 ACTAATCCCTTCATAAACACCCTT 57.597 37.500 0.00 0.00 0.00 3.95
562 1220 6.402981 AACTAATCCCTTCATAAACACCCT 57.597 37.500 0.00 0.00 0.00 4.34
563 1221 7.230712 CCATAACTAATCCCTTCATAAACACCC 59.769 40.741 0.00 0.00 0.00 4.61
564 1222 7.996644 TCCATAACTAATCCCTTCATAAACACC 59.003 37.037 0.00 0.00 0.00 4.16
565 1223 8.974060 TCCATAACTAATCCCTTCATAAACAC 57.026 34.615 0.00 0.00 0.00 3.32
566 1224 9.983024 TTTCCATAACTAATCCCTTCATAAACA 57.017 29.630 0.00 0.00 0.00 2.83
571 1229 9.225682 TCTACTTTCCATAACTAATCCCTTCAT 57.774 33.333 0.00 0.00 0.00 2.57
572 1230 8.618240 TCTACTTTCCATAACTAATCCCTTCA 57.382 34.615 0.00 0.00 0.00 3.02
582 1240 9.682465 GGGAGTAAAAATCTACTTTCCATAACT 57.318 33.333 0.00 0.00 32.14 2.24
583 1241 9.457436 TGGGAGTAAAAATCTACTTTCCATAAC 57.543 33.333 0.00 0.00 33.94 1.89
586 1244 9.190317 GAATGGGAGTAAAAATCTACTTTCCAT 57.810 33.333 10.92 10.92 42.11 3.41
587 1245 7.614192 GGAATGGGAGTAAAAATCTACTTTCCA 59.386 37.037 0.00 7.62 38.60 3.53
588 1246 7.068348 GGGAATGGGAGTAAAAATCTACTTTCC 59.932 40.741 0.00 0.00 32.14 3.13
589 1247 7.834681 AGGGAATGGGAGTAAAAATCTACTTTC 59.165 37.037 0.00 0.00 32.14 2.62
590 1248 7.709601 AGGGAATGGGAGTAAAAATCTACTTT 58.290 34.615 0.00 0.00 32.14 2.66
591 1249 7.285340 AGGGAATGGGAGTAAAAATCTACTT 57.715 36.000 0.00 0.00 32.14 2.24
592 1250 6.910259 AGGGAATGGGAGTAAAAATCTACT 57.090 37.500 0.00 0.00 34.76 2.57
593 1251 6.890268 ACAAGGGAATGGGAGTAAAAATCTAC 59.110 38.462 0.00 0.00 0.00 2.59
594 1252 7.039722 ACAAGGGAATGGGAGTAAAAATCTA 57.960 36.000 0.00 0.00 0.00 1.98
595 1253 5.903923 ACAAGGGAATGGGAGTAAAAATCT 58.096 37.500 0.00 0.00 0.00 2.40
596 1254 6.605471 AACAAGGGAATGGGAGTAAAAATC 57.395 37.500 0.00 0.00 0.00 2.17
597 1255 6.239858 CCAAACAAGGGAATGGGAGTAAAAAT 60.240 38.462 0.00 0.00 0.00 1.82
598 1256 5.071115 CCAAACAAGGGAATGGGAGTAAAAA 59.929 40.000 0.00 0.00 0.00 1.94
599 1257 4.591072 CCAAACAAGGGAATGGGAGTAAAA 59.409 41.667 0.00 0.00 0.00 1.52
600 1258 4.156477 CCAAACAAGGGAATGGGAGTAAA 58.844 43.478 0.00 0.00 0.00 2.01
601 1259 3.141272 ACCAAACAAGGGAATGGGAGTAA 59.859 43.478 0.00 0.00 37.26 2.24
602 1260 2.719705 ACCAAACAAGGGAATGGGAGTA 59.280 45.455 0.00 0.00 37.26 2.59
603 1261 1.503347 ACCAAACAAGGGAATGGGAGT 59.497 47.619 0.00 0.00 37.26 3.85
604 1262 2.309136 ACCAAACAAGGGAATGGGAG 57.691 50.000 0.00 0.00 37.26 4.30
605 1263 5.194740 TCATATACCAAACAAGGGAATGGGA 59.805 40.000 0.00 0.00 37.26 4.37
606 1264 5.454062 TCATATACCAAACAAGGGAATGGG 58.546 41.667 0.00 0.00 37.26 4.00
607 1265 6.015180 CCATCATATACCAAACAAGGGAATGG 60.015 42.308 0.00 0.00 38.91 3.16
608 1266 6.015180 CCCATCATATACCAAACAAGGGAATG 60.015 42.308 0.00 0.00 34.49 2.67
609 1267 6.077322 CCCATCATATACCAAACAAGGGAAT 58.923 40.000 0.00 0.00 34.49 3.01
610 1268 5.194740 TCCCATCATATACCAAACAAGGGAA 59.805 40.000 0.00 0.00 38.56 3.97
611 1269 4.729370 TCCCATCATATACCAAACAAGGGA 59.271 41.667 0.00 0.00 39.16 4.20
612 1270 5.060427 TCCCATCATATACCAAACAAGGG 57.940 43.478 0.00 0.00 0.00 3.95
613 1271 7.601705 AATTCCCATCATATACCAAACAAGG 57.398 36.000 0.00 0.00 0.00 3.61
614 1272 8.299570 GCTAATTCCCATCATATACCAAACAAG 58.700 37.037 0.00 0.00 0.00 3.16
615 1273 7.040755 CGCTAATTCCCATCATATACCAAACAA 60.041 37.037 0.00 0.00 0.00 2.83
616 1274 6.429692 CGCTAATTCCCATCATATACCAAACA 59.570 38.462 0.00 0.00 0.00 2.83
617 1275 6.430000 ACGCTAATTCCCATCATATACCAAAC 59.570 38.462 0.00 0.00 0.00 2.93
618 1276 6.429692 CACGCTAATTCCCATCATATACCAAA 59.570 38.462 0.00 0.00 0.00 3.28
619 1277 5.937540 CACGCTAATTCCCATCATATACCAA 59.062 40.000 0.00 0.00 0.00 3.67
620 1278 5.487433 CACGCTAATTCCCATCATATACCA 58.513 41.667 0.00 0.00 0.00 3.25
621 1279 4.876107 CCACGCTAATTCCCATCATATACC 59.124 45.833 0.00 0.00 0.00 2.73
622 1280 4.876107 CCCACGCTAATTCCCATCATATAC 59.124 45.833 0.00 0.00 0.00 1.47
623 1281 4.780554 TCCCACGCTAATTCCCATCATATA 59.219 41.667 0.00 0.00 0.00 0.86
624 1282 3.587061 TCCCACGCTAATTCCCATCATAT 59.413 43.478 0.00 0.00 0.00 1.78
625 1283 2.976185 TCCCACGCTAATTCCCATCATA 59.024 45.455 0.00 0.00 0.00 2.15
626 1284 1.774254 TCCCACGCTAATTCCCATCAT 59.226 47.619 0.00 0.00 0.00 2.45
627 1285 1.208706 TCCCACGCTAATTCCCATCA 58.791 50.000 0.00 0.00 0.00 3.07
628 1286 2.568623 ATCCCACGCTAATTCCCATC 57.431 50.000 0.00 0.00 0.00 3.51
629 1287 4.447138 TTTATCCCACGCTAATTCCCAT 57.553 40.909 0.00 0.00 0.00 4.00
630 1288 3.935818 TTTATCCCACGCTAATTCCCA 57.064 42.857 0.00 0.00 0.00 4.37
631 1289 4.204799 AGTTTTATCCCACGCTAATTCCC 58.795 43.478 0.00 0.00 0.00 3.97
632 1290 5.007724 CAGAGTTTTATCCCACGCTAATTCC 59.992 44.000 0.00 0.00 0.00 3.01
633 1291 5.504173 GCAGAGTTTTATCCCACGCTAATTC 60.504 44.000 0.00 0.00 0.00 2.17
634 1292 4.335594 GCAGAGTTTTATCCCACGCTAATT 59.664 41.667 0.00 0.00 0.00 1.40
635 1293 3.877508 GCAGAGTTTTATCCCACGCTAAT 59.122 43.478 0.00 0.00 0.00 1.73
636 1294 3.055385 AGCAGAGTTTTATCCCACGCTAA 60.055 43.478 0.00 0.00 0.00 3.09
637 1295 2.500098 AGCAGAGTTTTATCCCACGCTA 59.500 45.455 0.00 0.00 0.00 4.26
638 1296 1.279271 AGCAGAGTTTTATCCCACGCT 59.721 47.619 0.00 0.00 0.00 5.07
639 1297 1.739067 AGCAGAGTTTTATCCCACGC 58.261 50.000 0.00 0.00 0.00 5.34
640 1298 3.306166 CGTAAGCAGAGTTTTATCCCACG 59.694 47.826 0.00 0.00 0.00 4.94
641 1299 4.501071 TCGTAAGCAGAGTTTTATCCCAC 58.499 43.478 0.00 0.00 37.18 4.61
642 1300 4.811969 TCGTAAGCAGAGTTTTATCCCA 57.188 40.909 0.00 0.00 37.18 4.37
643 1301 6.679327 AATTCGTAAGCAGAGTTTTATCCC 57.321 37.500 0.00 0.00 37.18 3.85
644 1302 8.662141 TGTTAATTCGTAAGCAGAGTTTTATCC 58.338 33.333 0.00 0.00 37.18 2.59
645 1303 9.690434 CTGTTAATTCGTAAGCAGAGTTTTATC 57.310 33.333 0.00 0.00 37.18 1.75
646 1304 8.665685 CCTGTTAATTCGTAAGCAGAGTTTTAT 58.334 33.333 0.00 0.00 37.18 1.40
647 1305 7.118680 CCCTGTTAATTCGTAAGCAGAGTTTTA 59.881 37.037 0.00 0.00 37.18 1.52
648 1306 6.072673 CCCTGTTAATTCGTAAGCAGAGTTTT 60.073 38.462 0.00 0.00 37.18 2.43
649 1307 5.411669 CCCTGTTAATTCGTAAGCAGAGTTT 59.588 40.000 0.00 0.00 37.18 2.66
650 1308 4.935808 CCCTGTTAATTCGTAAGCAGAGTT 59.064 41.667 0.00 0.00 37.18 3.01
651 1309 4.020485 ACCCTGTTAATTCGTAAGCAGAGT 60.020 41.667 0.00 0.00 37.18 3.24
652 1310 4.504858 ACCCTGTTAATTCGTAAGCAGAG 58.495 43.478 0.00 0.00 37.18 3.35
653 1311 4.546829 ACCCTGTTAATTCGTAAGCAGA 57.453 40.909 0.00 0.00 37.18 4.26
654 1312 4.569564 GGTACCCTGTTAATTCGTAAGCAG 59.430 45.833 0.00 0.00 37.18 4.24
655 1313 4.506758 GGTACCCTGTTAATTCGTAAGCA 58.493 43.478 0.00 0.00 37.18 3.91
673 1331 3.118000 CACCTATTTCTTCCCAGGGGTAC 60.118 52.174 5.33 0.00 36.47 3.34
674 1332 3.120108 CACCTATTTCTTCCCAGGGGTA 58.880 50.000 5.33 0.00 36.47 3.69
675 1333 1.923148 CACCTATTTCTTCCCAGGGGT 59.077 52.381 5.33 0.00 36.47 4.95
676 1334 1.215423 CCACCTATTTCTTCCCAGGGG 59.785 57.143 5.33 0.92 32.12 4.79
677 1335 1.215423 CCCACCTATTTCTTCCCAGGG 59.785 57.143 0.00 0.00 32.12 4.45
678 1336 2.205342 TCCCACCTATTTCTTCCCAGG 58.795 52.381 0.00 0.00 0.00 4.45
679 1337 4.526438 ATTCCCACCTATTTCTTCCCAG 57.474 45.455 0.00 0.00 0.00 4.45
680 1338 4.571792 CCAATTCCCACCTATTTCTTCCCA 60.572 45.833 0.00 0.00 0.00 4.37
681 1339 3.960755 CCAATTCCCACCTATTTCTTCCC 59.039 47.826 0.00 0.00 0.00 3.97
682 1340 3.384789 GCCAATTCCCACCTATTTCTTCC 59.615 47.826 0.00 0.00 0.00 3.46
683 1341 4.281657 AGCCAATTCCCACCTATTTCTTC 58.718 43.478 0.00 0.00 0.00 2.87
684 1342 4.337264 AGCCAATTCCCACCTATTTCTT 57.663 40.909 0.00 0.00 0.00 2.52
685 1343 4.281657 GAAGCCAATTCCCACCTATTTCT 58.718 43.478 0.00 0.00 31.14 2.52
686 1344 4.655762 GAAGCCAATTCCCACCTATTTC 57.344 45.455 0.00 0.00 31.14 2.17
697 1355 2.095461 GGGAGTTGAGGAAGCCAATTC 58.905 52.381 0.00 0.00 37.17 2.17
698 1356 1.428912 TGGGAGTTGAGGAAGCCAATT 59.571 47.619 0.00 0.00 0.00 2.32
699 1357 1.075601 TGGGAGTTGAGGAAGCCAAT 58.924 50.000 0.00 0.00 0.00 3.16
700 1358 1.075601 ATGGGAGTTGAGGAAGCCAA 58.924 50.000 0.00 0.00 0.00 4.52
701 1359 1.004745 GAATGGGAGTTGAGGAAGCCA 59.995 52.381 0.00 0.00 0.00 4.75
702 1360 1.683319 GGAATGGGAGTTGAGGAAGCC 60.683 57.143 0.00 0.00 0.00 4.35
703 1361 1.683319 GGGAATGGGAGTTGAGGAAGC 60.683 57.143 0.00 0.00 0.00 3.86
704 1362 1.064389 GGGGAATGGGAGTTGAGGAAG 60.064 57.143 0.00 0.00 0.00 3.46
705 1363 0.999712 GGGGAATGGGAGTTGAGGAA 59.000 55.000 0.00 0.00 0.00 3.36
706 1364 0.121197 AGGGGAATGGGAGTTGAGGA 59.879 55.000 0.00 0.00 0.00 3.71
707 1365 1.002857 AAGGGGAATGGGAGTTGAGG 58.997 55.000 0.00 0.00 0.00 3.86
708 1366 1.064389 GGAAGGGGAATGGGAGTTGAG 60.064 57.143 0.00 0.00 0.00 3.02
709 1367 0.999712 GGAAGGGGAATGGGAGTTGA 59.000 55.000 0.00 0.00 0.00 3.18
710 1368 1.002857 AGGAAGGGGAATGGGAGTTG 58.997 55.000 0.00 0.00 0.00 3.16
711 1369 2.206223 GTAGGAAGGGGAATGGGAGTT 58.794 52.381 0.00 0.00 0.00 3.01
712 1370 1.369983 AGTAGGAAGGGGAATGGGAGT 59.630 52.381 0.00 0.00 0.00 3.85
713 1371 2.198334 AGTAGGAAGGGGAATGGGAG 57.802 55.000 0.00 0.00 0.00 4.30
714 1372 2.680439 AAGTAGGAAGGGGAATGGGA 57.320 50.000 0.00 0.00 0.00 4.37
715 1373 4.229812 AGTTTAAGTAGGAAGGGGAATGGG 59.770 45.833 0.00 0.00 0.00 4.00
716 1374 5.437946 GAGTTTAAGTAGGAAGGGGAATGG 58.562 45.833 0.00 0.00 0.00 3.16
717 1375 5.437946 GGAGTTTAAGTAGGAAGGGGAATG 58.562 45.833 0.00 0.00 0.00 2.67
718 1376 4.477581 GGGAGTTTAAGTAGGAAGGGGAAT 59.522 45.833 0.00 0.00 0.00 3.01
719 1377 3.848377 GGGAGTTTAAGTAGGAAGGGGAA 59.152 47.826 0.00 0.00 0.00 3.97
720 1378 3.181392 TGGGAGTTTAAGTAGGAAGGGGA 60.181 47.826 0.00 0.00 0.00 4.81
721 1379 3.187112 TGGGAGTTTAAGTAGGAAGGGG 58.813 50.000 0.00 0.00 0.00 4.79
722 1380 5.437946 GAATGGGAGTTTAAGTAGGAAGGG 58.562 45.833 0.00 0.00 0.00 3.95
723 1381 5.437946 GGAATGGGAGTTTAAGTAGGAAGG 58.562 45.833 0.00 0.00 0.00 3.46
724 1382 5.191921 AGGGAATGGGAGTTTAAGTAGGAAG 59.808 44.000 0.00 0.00 0.00 3.46
725 1383 5.105853 AGGGAATGGGAGTTTAAGTAGGAA 58.894 41.667 0.00 0.00 0.00 3.36
726 1384 4.706616 AGGGAATGGGAGTTTAAGTAGGA 58.293 43.478 0.00 0.00 0.00 2.94
727 1385 4.722279 AGAGGGAATGGGAGTTTAAGTAGG 59.278 45.833 0.00 0.00 0.00 3.18
728 1386 5.959583 AGAGGGAATGGGAGTTTAAGTAG 57.040 43.478 0.00 0.00 0.00 2.57
729 1387 7.626084 TGATTAGAGGGAATGGGAGTTTAAGTA 59.374 37.037 0.00 0.00 0.00 2.24
730 1388 6.447084 TGATTAGAGGGAATGGGAGTTTAAGT 59.553 38.462 0.00 0.00 0.00 2.24
731 1389 6.900194 TGATTAGAGGGAATGGGAGTTTAAG 58.100 40.000 0.00 0.00 0.00 1.85
732 1390 6.901615 TGATTAGAGGGAATGGGAGTTTAA 57.098 37.500 0.00 0.00 0.00 1.52
733 1391 6.901615 TTGATTAGAGGGAATGGGAGTTTA 57.098 37.500 0.00 0.00 0.00 2.01
734 1392 5.796502 TTGATTAGAGGGAATGGGAGTTT 57.203 39.130 0.00 0.00 0.00 2.66
735 1393 5.492524 TCTTTGATTAGAGGGAATGGGAGTT 59.507 40.000 0.00 0.00 0.00 3.01
736 1394 5.039645 TCTTTGATTAGAGGGAATGGGAGT 58.960 41.667 0.00 0.00 0.00 3.85
737 1395 5.131809 ACTCTTTGATTAGAGGGAATGGGAG 59.868 44.000 5.71 0.00 44.80 4.30
738 1396 5.039645 ACTCTTTGATTAGAGGGAATGGGA 58.960 41.667 5.71 0.00 44.80 4.37
739 1397 5.128919 CACTCTTTGATTAGAGGGAATGGG 58.871 45.833 5.71 0.00 46.54 4.00
740 1398 5.104360 TCCACTCTTTGATTAGAGGGAATGG 60.104 44.000 4.52 3.68 46.54 3.16
741 1399 5.819901 GTCCACTCTTTGATTAGAGGGAATG 59.180 44.000 4.52 0.00 46.54 2.67
742 1400 5.728741 AGTCCACTCTTTGATTAGAGGGAAT 59.271 40.000 4.52 5.26 46.54 3.01
743 1401 5.094387 AGTCCACTCTTTGATTAGAGGGAA 58.906 41.667 4.52 0.00 46.54 3.97
744 1402 4.689062 AGTCCACTCTTTGATTAGAGGGA 58.311 43.478 4.52 5.82 46.54 4.20
745 1403 5.428184 AAGTCCACTCTTTGATTAGAGGG 57.572 43.478 5.71 1.09 44.80 4.30
746 1404 8.848474 TTAAAAGTCCACTCTTTGATTAGAGG 57.152 34.615 5.71 0.00 44.80 3.69
750 1408 9.449719 GGAGATTAAAAGTCCACTCTTTGATTA 57.550 33.333 0.00 0.00 37.65 1.75
751 1409 8.166726 AGGAGATTAAAAGTCCACTCTTTGATT 58.833 33.333 0.00 0.00 37.65 2.57
752 1410 7.694093 AGGAGATTAAAAGTCCACTCTTTGAT 58.306 34.615 0.00 0.00 37.65 2.57
753 1411 7.079451 AGGAGATTAAAAGTCCACTCTTTGA 57.921 36.000 0.00 0.00 37.65 2.69
754 1412 6.936900 TGAGGAGATTAAAAGTCCACTCTTTG 59.063 38.462 0.00 0.00 37.65 2.77
755 1413 6.937465 GTGAGGAGATTAAAAGTCCACTCTTT 59.063 38.462 0.00 0.00 39.00 2.52
756 1414 6.468543 GTGAGGAGATTAAAAGTCCACTCTT 58.531 40.000 0.00 0.00 32.23 2.85
757 1415 5.046231 GGTGAGGAGATTAAAAGTCCACTCT 60.046 44.000 0.00 0.00 32.23 3.24
758 1416 5.179533 GGTGAGGAGATTAAAAGTCCACTC 58.820 45.833 0.00 0.00 32.23 3.51
759 1417 4.019231 GGGTGAGGAGATTAAAAGTCCACT 60.019 45.833 0.00 0.00 32.23 4.00
760 1418 4.262617 GGGTGAGGAGATTAAAAGTCCAC 58.737 47.826 4.45 0.00 32.23 4.02
761 1419 3.265995 GGGGTGAGGAGATTAAAAGTCCA 59.734 47.826 4.45 0.00 32.23 4.02
762 1420 3.523972 AGGGGTGAGGAGATTAAAAGTCC 59.476 47.826 0.00 0.00 0.00 3.85
763 1421 4.225267 TGAGGGGTGAGGAGATTAAAAGTC 59.775 45.833 0.00 0.00 0.00 3.01
764 1422 4.175962 TGAGGGGTGAGGAGATTAAAAGT 58.824 43.478 0.00 0.00 0.00 2.66
765 1423 4.844349 TGAGGGGTGAGGAGATTAAAAG 57.156 45.455 0.00 0.00 0.00 2.27
766 1424 4.601857 AGTTGAGGGGTGAGGAGATTAAAA 59.398 41.667 0.00 0.00 0.00 1.52
767 1425 4.175962 AGTTGAGGGGTGAGGAGATTAAA 58.824 43.478 0.00 0.00 0.00 1.52
768 1426 3.775316 GAGTTGAGGGGTGAGGAGATTAA 59.225 47.826 0.00 0.00 0.00 1.40
769 1427 3.375699 GAGTTGAGGGGTGAGGAGATTA 58.624 50.000 0.00 0.00 0.00 1.75
770 1428 2.192263 GAGTTGAGGGGTGAGGAGATT 58.808 52.381 0.00 0.00 0.00 2.40
771 1429 1.623834 GGAGTTGAGGGGTGAGGAGAT 60.624 57.143 0.00 0.00 0.00 2.75
772 1430 0.252284 GGAGTTGAGGGGTGAGGAGA 60.252 60.000 0.00 0.00 0.00 3.71
773 1431 1.268283 GGGAGTTGAGGGGTGAGGAG 61.268 65.000 0.00 0.00 0.00 3.69
774 1432 1.229529 GGGAGTTGAGGGGTGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
775 1433 2.660064 CGGGAGTTGAGGGGTGAGG 61.660 68.421 0.00 0.00 0.00 3.86
776 1434 1.913762 ACGGGAGTTGAGGGGTGAG 60.914 63.158 0.00 0.00 43.33 3.51
777 1435 2.203182 ACGGGAGTTGAGGGGTGA 59.797 61.111 0.00 0.00 43.33 4.02
788 1446 1.327690 TTCGAGATGGGGAACGGGAG 61.328 60.000 0.00 0.00 0.00 4.30
789 1447 0.689745 ATTCGAGATGGGGAACGGGA 60.690 55.000 0.00 0.00 0.00 5.14
790 1448 0.180406 AATTCGAGATGGGGAACGGG 59.820 55.000 0.00 0.00 0.00 5.28
791 1449 1.583054 GAATTCGAGATGGGGAACGG 58.417 55.000 0.00 0.00 0.00 4.44
792 1450 1.583054 GGAATTCGAGATGGGGAACG 58.417 55.000 0.00 0.00 0.00 3.95
793 1451 1.477014 GGGGAATTCGAGATGGGGAAC 60.477 57.143 0.00 0.00 0.00 3.62
794 1452 0.843984 GGGGAATTCGAGATGGGGAA 59.156 55.000 0.00 0.00 0.00 3.97
795 1453 1.060163 GGGGGAATTCGAGATGGGGA 61.060 60.000 0.00 0.00 0.00 4.81
796 1454 1.456287 GGGGGAATTCGAGATGGGG 59.544 63.158 0.00 0.00 0.00 4.96
797 1455 1.071471 CGGGGGAATTCGAGATGGG 59.929 63.158 0.00 0.00 0.00 4.00
798 1456 0.468226 TTCGGGGGAATTCGAGATGG 59.532 55.000 0.00 0.00 36.72 3.51
799 1457 1.583054 GTTCGGGGGAATTCGAGATG 58.417 55.000 0.00 0.00 36.72 2.90
800 1458 0.468648 GGTTCGGGGGAATTCGAGAT 59.531 55.000 0.00 0.00 36.72 2.75
801 1459 0.905809 TGGTTCGGGGGAATTCGAGA 60.906 55.000 0.00 0.00 36.72 4.04
802 1460 0.035820 TTGGTTCGGGGGAATTCGAG 60.036 55.000 0.00 0.00 36.72 4.04
803 1461 0.400975 TTTGGTTCGGGGGAATTCGA 59.599 50.000 0.00 0.00 0.00 3.71
804 1462 0.524414 GTTTGGTTCGGGGGAATTCG 59.476 55.000 0.00 0.00 0.00 3.34
805 1463 1.271379 GTGTTTGGTTCGGGGGAATTC 59.729 52.381 0.00 0.00 0.00 2.17
806 1464 1.334160 GTGTTTGGTTCGGGGGAATT 58.666 50.000 0.00 0.00 0.00 2.17
807 1465 0.891904 CGTGTTTGGTTCGGGGGAAT 60.892 55.000 0.00 0.00 0.00 3.01
808 1466 1.526455 CGTGTTTGGTTCGGGGGAA 60.526 57.895 0.00 0.00 0.00 3.97
809 1467 2.111460 CGTGTTTGGTTCGGGGGA 59.889 61.111 0.00 0.00 0.00 4.81
810 1468 3.666253 GCGTGTTTGGTTCGGGGG 61.666 66.667 0.00 0.00 0.00 5.40
811 1469 2.593436 AGCGTGTTTGGTTCGGGG 60.593 61.111 0.00 0.00 0.00 5.73
812 1470 2.184167 ACAGCGTGTTTGGTTCGGG 61.184 57.895 0.00 0.00 0.00 5.14
813 1471 1.010125 CACAGCGTGTTTGGTTCGG 60.010 57.895 1.24 0.00 0.00 4.30
814 1472 0.042188 CTCACAGCGTGTTTGGTTCG 60.042 55.000 8.22 0.00 34.79 3.95
815 1473 0.307760 CCTCACAGCGTGTTTGGTTC 59.692 55.000 8.22 0.00 34.79 3.62
816 1474 0.393808 ACCTCACAGCGTGTTTGGTT 60.394 50.000 8.22 1.07 32.70 3.67
817 1475 1.095228 CACCTCACAGCGTGTTTGGT 61.095 55.000 8.22 11.05 35.02 3.67
818 1476 1.095228 ACACCTCACAGCGTGTTTGG 61.095 55.000 8.22 10.58 40.24 3.28
819 1477 2.393557 ACACCTCACAGCGTGTTTG 58.606 52.632 8.22 6.87 40.24 2.93
820 1478 4.954933 ACACCTCACAGCGTGTTT 57.045 50.000 8.22 0.00 40.24 2.83
821 1479 4.954933 AACACCTCACAGCGTGTT 57.045 50.000 8.22 4.50 45.86 3.32
822 1480 1.095228 CCAAACACCTCACAGCGTGT 61.095 55.000 8.22 0.00 44.95 4.49
823 1481 0.813610 TCCAAACACCTCACAGCGTG 60.814 55.000 2.79 2.79 36.04 5.34
824 1482 0.814010 GTCCAAACACCTCACAGCGT 60.814 55.000 0.00 0.00 0.00 5.07
825 1483 0.532862 AGTCCAAACACCTCACAGCG 60.533 55.000 0.00 0.00 0.00 5.18
826 1484 1.202698 AGAGTCCAAACACCTCACAGC 60.203 52.381 0.00 0.00 0.00 4.40
827 1485 2.918712 AGAGTCCAAACACCTCACAG 57.081 50.000 0.00 0.00 0.00 3.66
828 1486 3.305720 AGTAGAGTCCAAACACCTCACA 58.694 45.455 0.00 0.00 0.00 3.58
829 1487 4.338379 AAGTAGAGTCCAAACACCTCAC 57.662 45.455 0.00 0.00 0.00 3.51
830 1488 4.500887 CGAAAGTAGAGTCCAAACACCTCA 60.501 45.833 0.00 0.00 0.00 3.86
867 1525 9.478768 CGTGTCCGAGACATATAGAGTATATAT 57.521 37.037 9.47 0.00 44.63 0.86
868 1526 8.689972 TCGTGTCCGAGACATATAGAGTATATA 58.310 37.037 9.47 0.00 44.63 0.86
889 1547 0.391395 AGTCGAGTCTCCGATCGTGT 60.391 55.000 15.09 0.00 40.91 4.49
920 1610 3.406764 CTGCCTGCTTATAGGGATTGAC 58.593 50.000 0.00 0.00 37.56 3.18
1170 1894 2.271173 TGCATCAGGAGCAGCAGG 59.729 61.111 0.00 0.00 37.02 4.85
1187 1911 1.346395 TCTTGTGTAATCGGGCACACT 59.654 47.619 13.06 0.00 44.12 3.55
1378 2114 2.175202 CTGGATAGGATTAGGCGAGCT 58.825 52.381 0.00 0.00 0.00 4.09
1407 2143 8.373981 TCTTCAGAGAAGATGACTTTCTTGAAT 58.626 33.333 5.41 0.00 36.10 2.57
1411 2147 6.463360 GGTCTTCAGAGAAGATGACTTTCTT 58.537 40.000 12.09 0.00 40.54 2.52
1598 2334 7.675062 CATAAGACCATAGAGCTCATTAGGTT 58.325 38.462 17.77 6.76 32.30 3.50
1599 2335 6.295575 GCATAAGACCATAGAGCTCATTAGGT 60.296 42.308 17.77 17.16 35.73 3.08
1601 2337 6.695429 TGCATAAGACCATAGAGCTCATTAG 58.305 40.000 17.77 4.36 0.00 1.73
2112 2851 4.081322 ACAACCCGTCACATAATATCCC 57.919 45.455 0.00 0.00 0.00 3.85
2167 2906 9.803315 TCAAGCTAACTAATACATCAACTACAG 57.197 33.333 0.00 0.00 0.00 2.74
2257 2996 8.636213 CAGCATCCCATCTCTTTTAACATAATT 58.364 33.333 0.00 0.00 0.00 1.40
2518 3258 3.524095 AATGGGCCAAATCATCCGATA 57.476 42.857 11.89 0.00 0.00 2.92
2650 3409 3.889044 GCGACGGATCTGAGCGGA 61.889 66.667 9.00 0.00 0.00 5.54
2814 3573 2.125753 GCTGCCAGAGGACGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
2842 3601 1.500474 CCTCCCTGTGAATAGAGCCA 58.500 55.000 0.00 0.00 0.00 4.75
2850 3609 3.900888 GGACACCCTCCCTGTGAA 58.099 61.111 0.00 0.00 37.18 3.18
3027 3788 0.674895 GCTCGCTTCCACCAGTTCAT 60.675 55.000 0.00 0.00 0.00 2.57
3036 3797 0.902984 TTCCCTGTAGCTCGCTTCCA 60.903 55.000 0.00 0.00 0.00 3.53
3132 3893 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
3148 3909 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3149 3910 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3150 3911 5.452078 CTCTCTCTCTCTCTCTCTCTCTC 57.548 52.174 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.