Multiple sequence alignment - TraesCS2D01G416700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G416700 chr2D 100.000 4653 0 0 913 5565 531043241 531047893 0.000000e+00 8593.0
1 TraesCS2D01G416700 chr2D 83.193 1547 175 36 1267 2788 530383260 530384746 0.000000e+00 1338.0
2 TraesCS2D01G416700 chr2D 83.546 1331 168 31 1267 2576 531201283 531202583 0.000000e+00 1197.0
3 TraesCS2D01G416700 chr2D 100.000 590 0 0 1 590 531042329 531042918 0.000000e+00 1090.0
4 TraesCS2D01G416700 chr2D 82.449 923 99 33 3759 4659 530385640 530386521 0.000000e+00 749.0
5 TraesCS2D01G416700 chr2D 84.392 756 66 25 3023 3769 530384853 530385565 0.000000e+00 695.0
6 TraesCS2D01G416700 chr2D 81.967 854 111 21 4715 5565 530386505 530387318 0.000000e+00 684.0
7 TraesCS2D01G416700 chr2D 82.780 633 69 25 4053 4659 531202988 531203606 3.820000e-146 529.0
8 TraesCS2D01G416700 chr2D 88.421 380 21 5 913 1275 531200835 531201208 2.380000e-118 436.0
9 TraesCS2D01G416700 chr2D 84.577 402 38 13 3108 3508 531202586 531202964 1.460000e-100 377.0
10 TraesCS2D01G416700 chr2D 94.079 152 9 0 1095 1246 530383001 530383152 1.210000e-56 231.0
11 TraesCS2D01G416700 chr2A 97.457 4325 58 23 1271 5565 675302419 675306721 0.000000e+00 7330.0
12 TraesCS2D01G416700 chr2A 83.371 1329 169 31 1271 2576 675582813 675584112 0.000000e+00 1182.0
13 TraesCS2D01G416700 chr2A 83.096 633 67 24 4053 4659 675584517 675585135 1.760000e-149 540.0
14 TraesCS2D01G416700 chr2A 88.235 374 27 5 913 1275 675582361 675582728 1.110000e-116 431.0
15 TraesCS2D01G416700 chr2A 88.182 220 23 1 1052 1271 675302153 675302369 5.530000e-65 259.0
16 TraesCS2D01G416700 chr2A 100.000 74 0 0 503 576 675582199 675582272 2.700000e-28 137.0
17 TraesCS2D01G416700 chr2B 92.639 1902 101 15 913 2788 630739484 630741372 0.000000e+00 2700.0
18 TraesCS2D01G416700 chr2B 83.592 1548 172 34 1271 2788 630729081 630730576 0.000000e+00 1376.0
19 TraesCS2D01G416700 chr2B 84.108 925 93 28 3763 4659 630731473 630732371 0.000000e+00 845.0
20 TraesCS2D01G416700 chr2B 88.439 692 47 17 3987 4659 630741915 630742592 0.000000e+00 804.0
21 TraesCS2D01G416700 chr2B 85.013 754 64 22 3023 3769 630730683 630731394 0.000000e+00 721.0
22 TraesCS2D01G416700 chr2B 81.940 897 105 24 4715 5565 630732355 630733240 0.000000e+00 706.0
23 TraesCS2D01G416700 chr2B 82.584 712 102 12 1267 1966 630770861 630771562 4.770000e-170 608.0
24 TraesCS2D01G416700 chr2B 85.353 553 62 13 2029 2575 630771812 630772351 6.300000e-154 555.0
25 TraesCS2D01G416700 chr2B 87.665 454 36 9 1 434 630737118 630737571 1.380000e-140 510.0
26 TraesCS2D01G416700 chr2B 87.045 440 37 7 3023 3456 630741493 630741918 3.900000e-131 479.0
27 TraesCS2D01G416700 chr2B 87.147 389 35 7 4737 5110 630742599 630742987 1.430000e-115 427.0
28 TraesCS2D01G416700 chr2B 88.056 360 24 9 929 1275 630770438 630770791 5.190000e-110 409.0
29 TraesCS2D01G416700 chr2B 87.288 354 28 9 5082 5427 630742990 630743334 6.760000e-104 388.0
30 TraesCS2D01G416700 chr2B 82.126 414 54 14 4258 4659 630772934 630773339 2.480000e-88 337.0
31 TraesCS2D01G416700 chr2B 94.737 152 8 0 1095 1246 630728819 630728970 2.590000e-58 237.0
32 TraesCS2D01G416700 chr2B 93.671 158 9 1 86 242 23982482 23982639 9.320000e-58 235.0
33 TraesCS2D01G416700 chr2B 96.203 79 3 0 5487 5565 630743357 630743435 4.520000e-26 130.0
34 TraesCS2D01G416700 chr2B 84.553 123 6 8 473 590 630770239 630770353 5.890000e-20 110.0
35 TraesCS2D01G416700 chr2B 88.710 62 6 1 192 252 471637423 471637484 2.150000e-09 75.0
36 TraesCS2D01G416700 chr3B 75.868 547 89 26 3227 3768 754272856 754272348 7.210000e-59 239.0
37 TraesCS2D01G416700 chr3B 82.707 133 14 4 2291 2418 754273359 754273231 5.890000e-20 110.0
38 TraesCS2D01G416700 chr3B 93.939 66 2 2 4650 4714 813121597 813121533 1.280000e-16 99.0
39 TraesCS2D01G416700 chr3B 85.714 56 7 1 198 252 51816649 51816594 2.170000e-04 58.4
40 TraesCS2D01G416700 chr5B 93.590 156 9 1 86 240 87491069 87490914 1.210000e-56 231.0
41 TraesCS2D01G416700 chr5B 96.825 63 1 1 4652 4714 419482491 419482430 2.740000e-18 104.0
42 TraesCS2D01G416700 chr7A 84.677 124 18 1 133 255 21350118 21350241 7.570000e-24 122.0
43 TraesCS2D01G416700 chr7A 96.552 58 1 1 4659 4716 180660359 180660303 1.650000e-15 95.3
44 TraesCS2D01G416700 chr4A 98.387 62 0 1 4653 4714 588567380 588567440 2.120000e-19 108.0
45 TraesCS2D01G416700 chr4A 96.296 54 2 0 2782 2835 16469318 16469371 7.680000e-14 89.8
46 TraesCS2D01G416700 chr4A 85.135 74 8 3 2787 2859 255307029 255306958 7.730000e-09 73.1
47 TraesCS2D01G416700 chr4D 96.721 61 1 1 4654 4714 371127094 371127153 3.550000e-17 100.0
48 TraesCS2D01G416700 chr4D 98.077 52 1 0 2784 2835 500440030 500440081 2.130000e-14 91.6
49 TraesCS2D01G416700 chr4D 94.444 54 3 0 2782 2835 450203796 450203743 3.570000e-12 84.2
50 TraesCS2D01G416700 chr1D 95.312 64 1 2 4651 4714 105351678 105351617 3.550000e-17 100.0
51 TraesCS2D01G416700 chr1D 84.783 92 6 5 279 364 453334707 453334796 9.930000e-13 86.1
52 TraesCS2D01G416700 chr5A 96.667 60 1 1 4655 4714 456454802 456454744 1.280000e-16 99.0
53 TraesCS2D01G416700 chr5A 94.030 67 1 3 4651 4715 582391738 582391803 1.280000e-16 99.0
54 TraesCS2D01G416700 chr5A 98.077 52 1 0 2784 2835 681286292 681286343 2.130000e-14 91.6
55 TraesCS2D01G416700 chr6D 94.444 54 2 1 2783 2835 327364456 327364403 1.280000e-11 82.4
56 TraesCS2D01G416700 chr6D 91.228 57 5 0 2776 2832 93529409 93529465 1.660000e-10 78.7
57 TraesCS2D01G416700 chr6D 86.765 68 8 1 2769 2835 304279393 304279460 2.150000e-09 75.0
58 TraesCS2D01G416700 chr6B 94.444 54 2 1 2783 2835 494088506 494088559 1.280000e-11 82.4
59 TraesCS2D01G416700 chr6B 90.000 60 5 1 2776 2835 503544564 503544622 5.980000e-10 76.8
60 TraesCS2D01G416700 chr7D 91.667 60 2 3 2776 2835 119897085 119897029 4.620000e-11 80.5
61 TraesCS2D01G416700 chr1A 93.182 44 2 1 200 242 402234371 402234414 4.650000e-06 63.9
62 TraesCS2D01G416700 chr7B 87.500 56 4 3 190 242 610628946 610629001 1.670000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G416700 chr2D 531042329 531047893 5564 False 4841.500000 8593 100.000000 1 5565 2 chr2D.!!$F2 5564
1 TraesCS2D01G416700 chr2D 530383001 530387318 4317 False 739.400000 1338 85.216000 1095 5565 5 chr2D.!!$F1 4470
2 TraesCS2D01G416700 chr2D 531200835 531203606 2771 False 634.750000 1197 84.831000 913 4659 4 chr2D.!!$F3 3746
3 TraesCS2D01G416700 chr2A 675302153 675306721 4568 False 3794.500000 7330 92.819500 1052 5565 2 chr2A.!!$F1 4513
4 TraesCS2D01G416700 chr2A 675582199 675585135 2936 False 572.500000 1182 88.675500 503 4659 4 chr2A.!!$F2 4156
5 TraesCS2D01G416700 chr2B 630728819 630743435 14616 False 776.916667 2700 87.984667 1 5565 12 chr2B.!!$F3 5564
6 TraesCS2D01G416700 chr2B 630770239 630773339 3100 False 403.800000 608 84.534400 473 4659 5 chr2B.!!$F4 4186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.112218 TTTTGCCCAGCCTAGCTTCA 59.888 50.0 0.0 0.0 36.4 3.02 F
1076 1131 0.249120 TCGTGGTCTTCGGCAATGAT 59.751 50.0 0.0 0.0 0.0 2.45 F
1487 1674 0.329596 AACTTCCTCCTCATGCACCC 59.670 55.0 0.0 0.0 0.0 4.61 F
3484 3947 0.451783 CTCGCCCGCTTTTATGCTTT 59.548 50.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 2102 0.469144 GGGGGCCTTGTTTCTTCACA 60.469 55.000 0.84 0.0 0.00 3.58 R
2347 2788 3.947196 AGTTCATCAGTGCAAACAGAACA 59.053 39.130 17.13 0.0 37.07 3.18 R
3486 3949 1.072331 GTGCGGATGGAGGGTTATCAT 59.928 52.381 0.00 0.0 0.00 2.45 R
4980 15727 3.126831 GGATGCAGTCTTCTATCAACGG 58.873 50.000 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.143675 CTAGACGCATGCAACCACT 57.856 52.632 19.57 10.81 0.00 4.00
19 20 2.293677 CTAGACGCATGCAACCACTA 57.706 50.000 19.57 11.34 0.00 2.74
20 21 2.196749 CTAGACGCATGCAACCACTAG 58.803 52.381 19.57 16.24 0.00 2.57
21 22 0.321671 AGACGCATGCAACCACTAGT 59.678 50.000 19.57 4.23 0.00 2.57
22 23 1.548719 AGACGCATGCAACCACTAGTA 59.451 47.619 19.57 0.00 0.00 1.82
23 24 1.659098 GACGCATGCAACCACTAGTAC 59.341 52.381 19.57 0.00 0.00 2.73
24 25 1.006832 CGCATGCAACCACTAGTACC 58.993 55.000 19.57 0.00 0.00 3.34
25 26 1.674519 CGCATGCAACCACTAGTACCA 60.675 52.381 19.57 0.00 0.00 3.25
26 27 1.737793 GCATGCAACCACTAGTACCAC 59.262 52.381 14.21 0.00 0.00 4.16
27 28 2.615493 GCATGCAACCACTAGTACCACT 60.615 50.000 14.21 0.00 0.00 4.00
28 29 2.831685 TGCAACCACTAGTACCACTG 57.168 50.000 0.00 0.00 0.00 3.66
29 30 1.346395 TGCAACCACTAGTACCACTGG 59.654 52.381 0.00 0.00 32.47 4.00
30 31 1.621814 GCAACCACTAGTACCACTGGA 59.378 52.381 0.71 0.00 30.59 3.86
31 32 2.353803 GCAACCACTAGTACCACTGGAG 60.354 54.545 0.71 0.00 30.59 3.86
32 33 1.558233 ACCACTAGTACCACTGGAGC 58.442 55.000 0.71 0.00 30.59 4.70
33 34 1.077334 ACCACTAGTACCACTGGAGCT 59.923 52.381 0.71 1.93 30.59 4.09
34 35 1.478510 CCACTAGTACCACTGGAGCTG 59.521 57.143 0.71 0.00 30.59 4.24
35 36 1.134965 CACTAGTACCACTGGAGCTGC 60.135 57.143 0.71 0.00 30.59 5.25
36 37 1.272760 ACTAGTACCACTGGAGCTGCT 60.273 52.381 6.82 0.00 30.59 4.24
37 38 2.025226 ACTAGTACCACTGGAGCTGCTA 60.025 50.000 6.82 0.00 30.59 3.49
38 39 1.479709 AGTACCACTGGAGCTGCTAG 58.520 55.000 6.82 0.00 0.00 3.42
39 40 1.187087 GTACCACTGGAGCTGCTAGT 58.813 55.000 6.82 0.00 39.11 2.57
42 43 2.985456 ACTGGAGCTGCTAGTGGC 59.015 61.111 6.82 0.00 36.90 5.01
50 51 2.048222 TGCTAGTGGCAGCACGAC 60.048 61.111 0.00 0.00 46.41 4.34
51 52 3.181967 GCTAGTGGCAGCACGACG 61.182 66.667 0.00 0.00 41.40 5.12
52 53 2.507102 CTAGTGGCAGCACGACGG 60.507 66.667 0.00 0.00 31.20 4.79
53 54 4.735132 TAGTGGCAGCACGACGGC 62.735 66.667 0.00 0.00 38.96 5.68
63 64 4.783621 ACGACGGCTGCCATGCAT 62.784 61.111 20.29 0.00 38.13 3.96
64 65 4.246206 CGACGGCTGCCATGCATG 62.246 66.667 20.19 20.19 38.13 4.06
65 66 4.564116 GACGGCTGCCATGCATGC 62.564 66.667 21.69 11.82 38.13 4.06
67 68 3.911698 CGGCTGCCATGCATGCAT 61.912 61.111 27.46 27.46 38.13 3.96
74 75 4.825377 CATGCATGCATGTGGGTG 57.175 55.556 40.30 23.81 46.20 4.61
75 76 1.142965 CATGCATGCATGTGGGTGG 59.857 57.895 40.30 21.55 46.20 4.61
76 77 2.727392 ATGCATGCATGTGGGTGGC 61.727 57.895 31.74 11.93 35.03 5.01
77 78 4.151582 GCATGCATGTGGGTGGCC 62.152 66.667 26.79 0.00 0.00 5.36
78 79 2.680707 CATGCATGTGGGTGGCCA 60.681 61.111 18.91 0.00 0.00 5.36
79 80 2.061578 CATGCATGTGGGTGGCCAT 61.062 57.895 18.91 0.00 0.00 4.40
80 81 0.756070 CATGCATGTGGGTGGCCATA 60.756 55.000 18.91 0.00 0.00 2.74
81 82 0.756442 ATGCATGTGGGTGGCCATAC 60.756 55.000 9.72 9.87 0.00 2.39
82 83 2.127232 GCATGTGGGTGGCCATACC 61.127 63.158 19.58 19.58 40.10 2.73
83 84 1.823470 CATGTGGGTGGCCATACCG 60.823 63.158 20.58 6.37 43.94 4.02
111 112 3.791973 CGGAGCTACTGTCATTTCTCT 57.208 47.619 0.00 0.00 0.00 3.10
112 113 3.443037 CGGAGCTACTGTCATTTCTCTG 58.557 50.000 0.00 0.00 0.00 3.35
113 114 3.736433 CGGAGCTACTGTCATTTCTCTGG 60.736 52.174 0.00 0.00 0.00 3.86
114 115 3.431486 GGAGCTACTGTCATTTCTCTGGG 60.431 52.174 0.00 0.00 0.00 4.45
115 116 2.093235 AGCTACTGTCATTTCTCTGGGC 60.093 50.000 0.00 0.00 0.00 5.36
116 117 2.355108 GCTACTGTCATTTCTCTGGGCA 60.355 50.000 0.00 0.00 0.00 5.36
117 118 2.486472 ACTGTCATTTCTCTGGGCAG 57.514 50.000 0.00 0.00 0.00 4.85
118 119 1.004044 ACTGTCATTTCTCTGGGCAGG 59.996 52.381 0.00 0.00 0.00 4.85
119 120 0.322816 TGTCATTTCTCTGGGCAGGC 60.323 55.000 0.00 0.00 0.00 4.85
120 121 1.034292 GTCATTTCTCTGGGCAGGCC 61.034 60.000 5.91 5.91 0.00 5.19
121 122 1.000521 CATTTCTCTGGGCAGGCCA 60.001 57.895 16.38 16.38 37.98 5.36
122 123 0.612732 CATTTCTCTGGGCAGGCCAA 60.613 55.000 18.05 1.75 37.98 4.52
123 124 0.114954 ATTTCTCTGGGCAGGCCAAA 59.885 50.000 18.05 8.78 37.98 3.28
124 125 0.827507 TTTCTCTGGGCAGGCCAAAC 60.828 55.000 18.05 0.00 37.98 2.93
125 126 2.005606 TTCTCTGGGCAGGCCAAACA 62.006 55.000 18.05 2.98 37.98 2.83
126 127 1.975407 CTCTGGGCAGGCCAAACAG 60.975 63.158 18.05 12.33 37.98 3.16
127 128 2.993264 CTGGGCAGGCCAAACAGG 60.993 66.667 18.05 0.43 41.84 4.00
128 129 3.815407 CTGGGCAGGCCAAACAGGT 62.815 63.158 18.05 0.00 40.61 4.00
129 130 2.991540 GGGCAGGCCAAACAGGTC 60.992 66.667 13.10 0.00 44.66 3.85
134 135 4.599036 GGCCAAACAGGTCAGGTT 57.401 55.556 0.00 0.00 43.39 3.50
135 136 2.820845 GGCCAAACAGGTCAGGTTT 58.179 52.632 0.00 0.00 43.39 3.27
136 137 1.989706 GGCCAAACAGGTCAGGTTTA 58.010 50.000 0.00 0.00 43.39 2.01
137 138 1.886542 GGCCAAACAGGTCAGGTTTAG 59.113 52.381 0.00 0.00 43.39 1.85
138 139 2.488347 GGCCAAACAGGTCAGGTTTAGA 60.488 50.000 0.00 0.00 43.39 2.10
139 140 3.219281 GCCAAACAGGTCAGGTTTAGAA 58.781 45.455 0.00 0.00 40.61 2.10
140 141 3.253432 GCCAAACAGGTCAGGTTTAGAAG 59.747 47.826 0.00 0.00 40.61 2.85
141 142 4.461198 CCAAACAGGTCAGGTTTAGAAGT 58.539 43.478 0.00 0.00 36.38 3.01
142 143 5.617252 CCAAACAGGTCAGGTTTAGAAGTA 58.383 41.667 0.00 0.00 36.38 2.24
143 144 5.469084 CCAAACAGGTCAGGTTTAGAAGTAC 59.531 44.000 0.00 0.00 36.38 2.73
144 145 4.886496 ACAGGTCAGGTTTAGAAGTACC 57.114 45.455 0.00 0.00 34.54 3.34
145 146 4.228824 ACAGGTCAGGTTTAGAAGTACCA 58.771 43.478 0.00 0.00 36.87 3.25
146 147 4.844655 ACAGGTCAGGTTTAGAAGTACCAT 59.155 41.667 0.00 0.00 36.87 3.55
147 148 5.309806 ACAGGTCAGGTTTAGAAGTACCATT 59.690 40.000 0.00 0.00 36.87 3.16
148 149 6.499350 ACAGGTCAGGTTTAGAAGTACCATTA 59.501 38.462 0.00 0.00 36.87 1.90
149 150 7.016858 ACAGGTCAGGTTTAGAAGTACCATTAA 59.983 37.037 0.00 0.00 36.87 1.40
150 151 7.881232 CAGGTCAGGTTTAGAAGTACCATTAAA 59.119 37.037 0.00 0.00 36.87 1.52
151 152 8.442374 AGGTCAGGTTTAGAAGTACCATTAAAA 58.558 33.333 0.00 0.00 36.87 1.52
152 153 9.239551 GGTCAGGTTTAGAAGTACCATTAAAAT 57.760 33.333 0.00 0.00 36.87 1.82
165 166 9.715121 AGTACCATTAAAATTTCACTCTTACGA 57.285 29.630 0.00 0.00 0.00 3.43
166 167 9.750882 GTACCATTAAAATTTCACTCTTACGAC 57.249 33.333 0.00 0.00 0.00 4.34
167 168 7.813645 ACCATTAAAATTTCACTCTTACGACC 58.186 34.615 0.00 0.00 0.00 4.79
168 169 7.664318 ACCATTAAAATTTCACTCTTACGACCT 59.336 33.333 0.00 0.00 0.00 3.85
169 170 9.158233 CCATTAAAATTTCACTCTTACGACCTA 57.842 33.333 0.00 0.00 0.00 3.08
174 175 8.705048 AAATTTCACTCTTACGACCTAGATTC 57.295 34.615 0.00 0.00 0.00 2.52
175 176 6.829229 TTTCACTCTTACGACCTAGATTCA 57.171 37.500 0.00 0.00 0.00 2.57
176 177 6.829229 TTCACTCTTACGACCTAGATTCAA 57.171 37.500 0.00 0.00 0.00 2.69
177 178 6.192234 TCACTCTTACGACCTAGATTCAAC 57.808 41.667 0.00 0.00 0.00 3.18
178 179 5.708697 TCACTCTTACGACCTAGATTCAACA 59.291 40.000 0.00 0.00 0.00 3.33
179 180 5.800941 CACTCTTACGACCTAGATTCAACAC 59.199 44.000 0.00 0.00 0.00 3.32
180 181 5.711036 ACTCTTACGACCTAGATTCAACACT 59.289 40.000 0.00 0.00 0.00 3.55
181 182 6.883217 ACTCTTACGACCTAGATTCAACACTA 59.117 38.462 0.00 0.00 0.00 2.74
182 183 7.556996 ACTCTTACGACCTAGATTCAACACTAT 59.443 37.037 0.00 0.00 0.00 2.12
183 184 8.289939 TCTTACGACCTAGATTCAACACTATT 57.710 34.615 0.00 0.00 0.00 1.73
184 185 8.404000 TCTTACGACCTAGATTCAACACTATTC 58.596 37.037 0.00 0.00 0.00 1.75
185 186 6.777213 ACGACCTAGATTCAACACTATTCT 57.223 37.500 0.00 0.00 0.00 2.40
186 187 6.565234 ACGACCTAGATTCAACACTATTCTG 58.435 40.000 0.00 0.00 0.00 3.02
187 188 5.980116 CGACCTAGATTCAACACTATTCTGG 59.020 44.000 0.00 0.00 0.00 3.86
188 189 6.183360 CGACCTAGATTCAACACTATTCTGGA 60.183 42.308 0.00 0.00 0.00 3.86
189 190 6.879400 ACCTAGATTCAACACTATTCTGGAC 58.121 40.000 0.00 0.00 0.00 4.02
190 191 6.440647 ACCTAGATTCAACACTATTCTGGACA 59.559 38.462 0.00 0.00 0.00 4.02
191 192 7.038302 ACCTAGATTCAACACTATTCTGGACAA 60.038 37.037 0.00 0.00 0.00 3.18
192 193 7.824289 CCTAGATTCAACACTATTCTGGACAAA 59.176 37.037 0.00 0.00 0.00 2.83
193 194 9.219603 CTAGATTCAACACTATTCTGGACAAAA 57.780 33.333 0.00 0.00 0.00 2.44
194 195 8.463930 AGATTCAACACTATTCTGGACAAAAA 57.536 30.769 0.00 0.00 0.00 1.94
195 196 9.082313 AGATTCAACACTATTCTGGACAAAAAT 57.918 29.630 0.00 0.00 0.00 1.82
196 197 9.346725 GATTCAACACTATTCTGGACAAAAATC 57.653 33.333 0.00 0.00 0.00 2.17
197 198 8.463930 TTCAACACTATTCTGGACAAAAATCT 57.536 30.769 0.00 0.00 0.00 2.40
198 199 9.567776 TTCAACACTATTCTGGACAAAAATCTA 57.432 29.630 0.00 0.00 0.00 1.98
199 200 9.219603 TCAACACTATTCTGGACAAAAATCTAG 57.780 33.333 0.00 0.00 0.00 2.43
200 201 9.003658 CAACACTATTCTGGACAAAAATCTAGT 57.996 33.333 0.00 0.00 0.00 2.57
201 202 9.574516 AACACTATTCTGGACAAAAATCTAGTT 57.425 29.630 0.00 0.00 0.00 2.24
202 203 9.003658 ACACTATTCTGGACAAAAATCTAGTTG 57.996 33.333 0.00 0.00 0.00 3.16
203 204 8.454106 CACTATTCTGGACAAAAATCTAGTTGG 58.546 37.037 0.00 0.00 0.00 3.77
204 205 6.840780 ATTCTGGACAAAAATCTAGTTGGG 57.159 37.500 0.00 0.00 0.00 4.12
205 206 4.079253 TCTGGACAAAAATCTAGTTGGGC 58.921 43.478 0.00 0.00 0.00 5.36
206 207 3.826157 CTGGACAAAAATCTAGTTGGGCA 59.174 43.478 0.00 0.00 0.00 5.36
207 208 3.826157 TGGACAAAAATCTAGTTGGGCAG 59.174 43.478 0.00 0.00 0.00 4.85
208 209 3.193479 GGACAAAAATCTAGTTGGGCAGG 59.807 47.826 0.00 0.00 0.00 4.85
209 210 3.165071 ACAAAAATCTAGTTGGGCAGGG 58.835 45.455 0.00 0.00 0.00 4.45
210 211 1.852633 AAAATCTAGTTGGGCAGGGC 58.147 50.000 0.00 0.00 0.00 5.19
211 212 0.394352 AAATCTAGTTGGGCAGGGCG 60.394 55.000 0.00 0.00 0.00 6.13
212 213 2.270874 AATCTAGTTGGGCAGGGCGG 62.271 60.000 0.00 0.00 0.00 6.13
213 214 4.489771 CTAGTTGGGCAGGGCGGG 62.490 72.222 0.00 0.00 0.00 6.13
238 239 4.841441 CTGGTTTTGCCCAGCCTA 57.159 55.556 0.00 0.00 45.19 3.93
239 240 2.571548 CTGGTTTTGCCCAGCCTAG 58.428 57.895 0.00 0.00 45.19 3.02
240 241 1.598701 CTGGTTTTGCCCAGCCTAGC 61.599 60.000 0.00 0.00 45.19 3.42
241 242 1.304464 GGTTTTGCCCAGCCTAGCT 60.304 57.895 0.00 0.00 40.77 3.32
242 243 0.900182 GGTTTTGCCCAGCCTAGCTT 60.900 55.000 0.00 0.00 36.40 3.74
243 244 0.528017 GTTTTGCCCAGCCTAGCTTC 59.472 55.000 0.00 0.00 36.40 3.86
244 245 0.112218 TTTTGCCCAGCCTAGCTTCA 59.888 50.000 0.00 0.00 36.40 3.02
245 246 0.609131 TTTGCCCAGCCTAGCTTCAC 60.609 55.000 0.00 0.00 36.40 3.18
246 247 2.512515 GCCCAGCCTAGCTTCACG 60.513 66.667 0.00 0.00 36.40 4.35
247 248 3.019003 GCCCAGCCTAGCTTCACGA 62.019 63.158 0.00 0.00 36.40 4.35
248 249 1.153549 CCCAGCCTAGCTTCACGAC 60.154 63.158 0.00 0.00 36.40 4.34
249 250 1.608717 CCCAGCCTAGCTTCACGACT 61.609 60.000 0.00 0.00 36.40 4.18
250 251 0.459237 CCAGCCTAGCTTCACGACTG 60.459 60.000 0.00 0.00 36.40 3.51
251 252 1.080995 CAGCCTAGCTTCACGACTGC 61.081 60.000 0.00 0.00 36.40 4.40
252 253 1.079819 GCCTAGCTTCACGACTGCA 60.080 57.895 0.00 0.00 0.00 4.41
253 254 0.460987 GCCTAGCTTCACGACTGCAT 60.461 55.000 0.00 0.00 0.00 3.96
254 255 1.202417 GCCTAGCTTCACGACTGCATA 60.202 52.381 0.00 0.00 0.00 3.14
255 256 2.464865 CCTAGCTTCACGACTGCATAC 58.535 52.381 0.00 0.00 0.00 2.39
256 257 2.159240 CCTAGCTTCACGACTGCATACA 60.159 50.000 0.00 0.00 0.00 2.29
257 258 2.455674 AGCTTCACGACTGCATACAA 57.544 45.000 0.00 0.00 0.00 2.41
258 259 2.766313 AGCTTCACGACTGCATACAAA 58.234 42.857 0.00 0.00 0.00 2.83
259 260 3.338249 AGCTTCACGACTGCATACAAAT 58.662 40.909 0.00 0.00 0.00 2.32
260 261 4.503910 AGCTTCACGACTGCATACAAATA 58.496 39.130 0.00 0.00 0.00 1.40
261 262 4.330074 AGCTTCACGACTGCATACAAATAC 59.670 41.667 0.00 0.00 0.00 1.89
262 263 4.779082 GCTTCACGACTGCATACAAATACG 60.779 45.833 0.00 0.00 0.00 3.06
263 264 4.099380 TCACGACTGCATACAAATACGA 57.901 40.909 0.00 0.00 0.00 3.43
264 265 3.855379 TCACGACTGCATACAAATACGAC 59.145 43.478 0.00 0.00 0.00 4.34
265 266 3.610677 CACGACTGCATACAAATACGACA 59.389 43.478 0.00 0.00 0.00 4.35
266 267 4.090786 CACGACTGCATACAAATACGACAA 59.909 41.667 0.00 0.00 0.00 3.18
267 268 4.868171 ACGACTGCATACAAATACGACAAT 59.132 37.500 0.00 0.00 0.00 2.71
268 269 5.350365 ACGACTGCATACAAATACGACAATT 59.650 36.000 0.00 0.00 0.00 2.32
269 270 6.128391 ACGACTGCATACAAATACGACAATTT 60.128 34.615 0.00 0.00 0.00 1.82
270 271 7.063662 ACGACTGCATACAAATACGACAATTTA 59.936 33.333 0.00 0.00 0.00 1.40
271 272 7.900864 CGACTGCATACAAATACGACAATTTAA 59.099 33.333 0.00 0.00 0.00 1.52
272 273 9.210426 GACTGCATACAAATACGACAATTTAAG 57.790 33.333 0.00 0.00 0.00 1.85
273 274 8.941977 ACTGCATACAAATACGACAATTTAAGA 58.058 29.630 0.00 0.00 0.00 2.10
274 275 9.767684 CTGCATACAAATACGACAATTTAAGAA 57.232 29.630 0.00 0.00 0.00 2.52
285 286 7.013529 ACGACAATTTAAGAAATCGTACAAGC 58.986 34.615 0.00 0.00 30.30 4.01
286 287 6.464834 CGACAATTTAAGAAATCGTACAAGCC 59.535 38.462 0.00 0.00 0.00 4.35
287 288 6.311723 ACAATTTAAGAAATCGTACAAGCCG 58.688 36.000 0.00 0.00 0.00 5.52
288 289 6.148150 ACAATTTAAGAAATCGTACAAGCCGA 59.852 34.615 0.00 0.00 38.89 5.54
289 290 6.920569 ATTTAAGAAATCGTACAAGCCGAT 57.079 33.333 0.00 0.00 46.29 4.18
290 291 5.712217 TTAAGAAATCGTACAAGCCGATG 57.288 39.130 0.00 0.00 43.75 3.84
291 292 3.520290 AGAAATCGTACAAGCCGATGA 57.480 42.857 0.00 0.00 43.75 2.92
292 293 3.857052 AGAAATCGTACAAGCCGATGAA 58.143 40.909 0.00 0.00 43.75 2.57
293 294 4.250464 AGAAATCGTACAAGCCGATGAAA 58.750 39.130 0.00 0.00 43.75 2.69
294 295 4.693566 AGAAATCGTACAAGCCGATGAAAA 59.306 37.500 0.00 0.00 43.75 2.29
295 296 5.180492 AGAAATCGTACAAGCCGATGAAAAA 59.820 36.000 0.00 0.00 43.75 1.94
313 314 3.795561 AAAACTGATGAAACGAGAGCG 57.204 42.857 0.00 0.00 44.79 5.03
314 315 2.724977 AACTGATGAAACGAGAGCGA 57.275 45.000 0.00 0.00 41.64 4.93
315 316 1.983972 ACTGATGAAACGAGAGCGAC 58.016 50.000 0.00 0.00 41.64 5.19
316 317 1.542030 ACTGATGAAACGAGAGCGACT 59.458 47.619 0.00 0.00 41.64 4.18
317 318 1.916651 CTGATGAAACGAGAGCGACTG 59.083 52.381 0.00 0.00 41.64 3.51
318 319 1.539827 TGATGAAACGAGAGCGACTGA 59.460 47.619 0.00 0.00 41.64 3.41
319 320 2.181205 GATGAAACGAGAGCGACTGAG 58.819 52.381 0.00 0.00 41.64 3.35
320 321 1.235724 TGAAACGAGAGCGACTGAGA 58.764 50.000 0.00 0.00 41.64 3.27
321 322 1.813178 TGAAACGAGAGCGACTGAGAT 59.187 47.619 0.00 0.00 41.64 2.75
322 323 2.159503 TGAAACGAGAGCGACTGAGATC 60.160 50.000 0.00 0.00 41.64 2.75
323 324 1.745232 AACGAGAGCGACTGAGATCT 58.255 50.000 0.00 0.00 39.87 2.75
324 325 2.605837 ACGAGAGCGACTGAGATCTA 57.394 50.000 0.00 0.00 36.96 1.98
325 326 3.120321 ACGAGAGCGACTGAGATCTAT 57.880 47.619 0.00 0.00 36.96 1.98
326 327 4.260139 ACGAGAGCGACTGAGATCTATA 57.740 45.455 0.00 0.00 36.96 1.31
327 328 4.827692 ACGAGAGCGACTGAGATCTATAT 58.172 43.478 0.00 0.00 36.96 0.86
328 329 4.629634 ACGAGAGCGACTGAGATCTATATG 59.370 45.833 0.00 0.00 36.96 1.78
329 330 4.033932 CGAGAGCGACTGAGATCTATATGG 59.966 50.000 0.00 0.00 36.96 2.74
330 331 4.269183 AGAGCGACTGAGATCTATATGGG 58.731 47.826 0.00 0.00 34.82 4.00
331 332 2.757868 AGCGACTGAGATCTATATGGGC 59.242 50.000 0.00 0.00 0.00 5.36
332 333 2.159170 GCGACTGAGATCTATATGGGCC 60.159 54.545 0.00 0.00 0.00 5.80
333 334 2.098280 CGACTGAGATCTATATGGGCCG 59.902 54.545 0.00 0.00 0.00 6.13
334 335 2.428890 GACTGAGATCTATATGGGCCGG 59.571 54.545 0.00 0.00 0.00 6.13
335 336 1.137872 CTGAGATCTATATGGGCCGGC 59.862 57.143 21.18 21.18 0.00 6.13
336 337 0.466124 GAGATCTATATGGGCCGGCC 59.534 60.000 38.57 38.57 0.00 6.13
352 353 3.691342 CCCAGACGGACGCCTTCA 61.691 66.667 5.45 0.00 0.00 3.02
353 354 2.125912 CCAGACGGACGCCTTCAG 60.126 66.667 5.45 0.00 0.00 3.02
354 355 2.125912 CAGACGGACGCCTTCAGG 60.126 66.667 5.45 0.00 38.53 3.86
390 391 1.927895 CTGTAAGCGCTGGTTAGGAG 58.072 55.000 12.58 0.00 0.00 3.69
391 392 0.535335 TGTAAGCGCTGGTTAGGAGG 59.465 55.000 12.58 0.00 0.00 4.30
392 393 0.810426 GTAAGCGCTGGTTAGGAGGC 60.810 60.000 12.58 0.00 0.00 4.70
393 394 1.968050 TAAGCGCTGGTTAGGAGGCC 61.968 60.000 12.58 0.00 0.00 5.19
394 395 4.858680 GCGCTGGTTAGGAGGCCC 62.859 72.222 0.00 0.00 0.00 5.80
395 396 4.176752 CGCTGGTTAGGAGGCCCC 62.177 72.222 0.00 0.00 0.00 5.80
396 397 3.015145 GCTGGTTAGGAGGCCCCA 61.015 66.667 12.24 4.63 37.41 4.96
397 398 2.998949 CTGGTTAGGAGGCCCCAC 59.001 66.667 12.24 3.23 37.41 4.61
398 399 1.923395 CTGGTTAGGAGGCCCCACA 60.923 63.158 12.24 5.32 37.41 4.17
399 400 1.915078 CTGGTTAGGAGGCCCCACAG 61.915 65.000 12.24 10.12 37.41 3.66
400 401 1.923909 GGTTAGGAGGCCCCACAGT 60.924 63.158 12.24 0.00 37.41 3.55
401 402 1.299976 GTTAGGAGGCCCCACAGTG 59.700 63.158 12.24 0.00 37.41 3.66
402 403 1.159905 TTAGGAGGCCCCACAGTGA 59.840 57.895 12.24 0.00 37.41 3.41
403 404 1.198759 TTAGGAGGCCCCACAGTGAC 61.199 60.000 12.24 0.00 37.41 3.67
404 405 4.035102 GGAGGCCCCACAGTGACC 62.035 72.222 0.62 0.35 34.14 4.02
405 406 4.035102 GAGGCCCCACAGTGACCC 62.035 72.222 0.62 0.00 0.00 4.46
406 407 4.918360 AGGCCCCACAGTGACCCA 62.918 66.667 0.62 0.00 0.00 4.51
407 408 4.660938 GGCCCCACAGTGACCCAC 62.661 72.222 0.62 0.00 34.10 4.61
408 409 3.570212 GCCCCACAGTGACCCACT 61.570 66.667 0.62 0.00 46.51 4.00
409 410 2.221299 GCCCCACAGTGACCCACTA 61.221 63.158 0.62 0.00 43.43 2.74
410 411 1.562672 GCCCCACAGTGACCCACTAT 61.563 60.000 0.62 0.00 43.43 2.12
411 412 0.253044 CCCCACAGTGACCCACTATG 59.747 60.000 0.62 0.00 43.43 2.23
421 422 2.125310 CCACTATGGGCGCGTGAA 60.125 61.111 8.43 0.00 32.67 3.18
422 423 2.173669 CCACTATGGGCGCGTGAAG 61.174 63.158 8.43 5.55 32.67 3.02
423 424 2.511600 ACTATGGGCGCGTGAAGC 60.512 61.111 8.43 0.00 43.95 3.86
434 435 3.345737 CGTGAAGCGCTGAATAGGA 57.654 52.632 12.58 0.00 0.00 2.94
435 436 1.203928 CGTGAAGCGCTGAATAGGAG 58.796 55.000 12.58 0.00 0.00 3.69
436 437 1.576356 GTGAAGCGCTGAATAGGAGG 58.424 55.000 12.58 0.00 0.00 4.30
437 438 1.134670 GTGAAGCGCTGAATAGGAGGT 60.135 52.381 12.58 0.00 0.00 3.85
438 439 2.100916 GTGAAGCGCTGAATAGGAGGTA 59.899 50.000 12.58 0.00 0.00 3.08
439 440 2.965831 TGAAGCGCTGAATAGGAGGTAT 59.034 45.455 12.58 0.00 0.00 2.73
440 441 3.005897 TGAAGCGCTGAATAGGAGGTATC 59.994 47.826 12.58 0.00 0.00 2.24
441 442 1.542030 AGCGCTGAATAGGAGGTATCG 59.458 52.381 10.39 0.00 0.00 2.92
442 443 1.269998 GCGCTGAATAGGAGGTATCGT 59.730 52.381 0.00 0.00 0.00 3.73
443 444 2.486982 GCGCTGAATAGGAGGTATCGTA 59.513 50.000 0.00 0.00 0.00 3.43
444 445 3.057736 GCGCTGAATAGGAGGTATCGTAA 60.058 47.826 0.00 0.00 30.10 3.18
445 446 4.380655 GCGCTGAATAGGAGGTATCGTAAT 60.381 45.833 0.00 0.00 30.10 1.89
446 447 5.163683 GCGCTGAATAGGAGGTATCGTAATA 60.164 44.000 0.00 0.00 30.10 0.98
447 448 6.624423 GCGCTGAATAGGAGGTATCGTAATAA 60.624 42.308 0.00 0.00 30.10 1.40
448 449 7.310664 CGCTGAATAGGAGGTATCGTAATAAA 58.689 38.462 0.00 0.00 30.10 1.40
449 450 7.811236 CGCTGAATAGGAGGTATCGTAATAAAA 59.189 37.037 0.00 0.00 30.10 1.52
450 451 9.141400 GCTGAATAGGAGGTATCGTAATAAAAG 57.859 37.037 0.00 0.00 30.10 2.27
456 457 8.302515 AGGAGGTATCGTAATAAAAGAACTCA 57.697 34.615 0.00 0.00 0.00 3.41
457 458 8.755977 AGGAGGTATCGTAATAAAAGAACTCAA 58.244 33.333 0.00 0.00 0.00 3.02
458 459 9.374838 GGAGGTATCGTAATAAAAGAACTCAAA 57.625 33.333 0.00 0.00 0.00 2.69
946 992 2.205152 GCCGCTATAACGAGGGGGA 61.205 63.158 8.41 0.00 46.97 4.81
975 1030 3.083349 GCCCCAAAGCCCCCAATC 61.083 66.667 0.00 0.00 0.00 2.67
978 1033 2.365502 CCAAAGCCCCCAATCCCC 60.366 66.667 0.00 0.00 0.00 4.81
1010 1065 5.561919 CGTCCAAATCCAATCGAAAGTTCAA 60.562 40.000 0.00 0.00 0.00 2.69
1028 1083 2.367241 TCAATTCCATCCTAATCGCCGA 59.633 45.455 0.00 0.00 0.00 5.54
1030 1085 1.410004 TTCCATCCTAATCGCCGACT 58.590 50.000 0.00 0.00 0.00 4.18
1031 1086 1.410004 TCCATCCTAATCGCCGACTT 58.590 50.000 0.00 0.00 0.00 3.01
1032 1087 1.760613 TCCATCCTAATCGCCGACTTT 59.239 47.619 0.00 0.00 0.00 2.66
1033 1088 1.867233 CCATCCTAATCGCCGACTTTG 59.133 52.381 0.00 0.00 0.00 2.77
1034 1089 2.550978 CATCCTAATCGCCGACTTTGT 58.449 47.619 0.00 0.00 0.00 2.83
1035 1090 3.491964 CCATCCTAATCGCCGACTTTGTA 60.492 47.826 0.00 0.00 0.00 2.41
1041 1096 3.098555 GCCGACTTTGTATGGGCG 58.901 61.111 0.00 0.00 33.58 6.13
1043 1098 1.977594 GCCGACTTTGTATGGGCGTG 61.978 60.000 0.00 0.00 33.58 5.34
1076 1131 0.249120 TCGTGGTCTTCGGCAATGAT 59.751 50.000 0.00 0.00 0.00 2.45
1089 1144 0.460109 CAATGATGACGAGGACGCCA 60.460 55.000 0.00 0.00 43.96 5.69
1130 1197 2.044946 GTCTCCGGCAAGGGCAAT 60.045 61.111 0.00 0.00 43.71 3.56
1209 1276 2.498726 GCCTGCTCTCCTTCCTCG 59.501 66.667 0.00 0.00 0.00 4.63
1247 1314 0.798771 GCGCCTTCAGAGAGTACGTG 60.799 60.000 0.00 0.00 0.00 4.49
1265 1356 8.186178 AGTACGTGTATGCTTTTTATCTTGAG 57.814 34.615 0.00 0.00 0.00 3.02
1266 1357 8.033038 AGTACGTGTATGCTTTTTATCTTGAGA 58.967 33.333 0.00 0.00 0.00 3.27
1267 1358 7.849804 ACGTGTATGCTTTTTATCTTGAGAT 57.150 32.000 0.00 0.00 38.51 2.75
1268 1359 7.910304 ACGTGTATGCTTTTTATCTTGAGATC 58.090 34.615 0.00 0.00 36.05 2.75
1269 1360 7.059817 CGTGTATGCTTTTTATCTTGAGATCG 58.940 38.462 0.00 0.00 36.05 3.69
1274 1461 4.268884 GCTTTTTATCTTGAGATCGACGCT 59.731 41.667 0.00 0.00 36.05 5.07
1487 1674 0.329596 AACTTCCTCCTCATGCACCC 59.670 55.000 0.00 0.00 0.00 4.61
1507 1694 2.970324 GCTTCGCCAACGTGGTCA 60.970 61.111 0.00 0.00 40.46 4.02
1546 1733 1.293498 CTGGACAAGCAGTACGCCT 59.707 57.895 6.15 0.00 44.04 5.52
1888 2102 0.878961 GTTTGTTCCTGAGGCGTCGT 60.879 55.000 0.00 0.00 0.00 4.34
2350 2791 5.576447 CCACTTTTGGTTACTGTTCTGTT 57.424 39.130 0.00 0.00 38.23 3.16
2351 2792 5.578776 CCACTTTTGGTTACTGTTCTGTTC 58.421 41.667 0.00 0.00 38.23 3.18
2961 3415 8.691661 ATGAAAATGGCGGTAAATTAGATAGT 57.308 30.769 0.00 0.00 0.00 2.12
2962 3416 9.787435 ATGAAAATGGCGGTAAATTAGATAGTA 57.213 29.630 0.00 0.00 0.00 1.82
3149 3603 7.390027 ACATGATACCTTTCATCCTGCTATAC 58.610 38.462 0.00 0.00 34.09 1.47
3275 3730 7.372260 AGAACTCTTGGATATATTGCTGACT 57.628 36.000 0.00 0.00 0.00 3.41
3276 3731 8.484214 AGAACTCTTGGATATATTGCTGACTA 57.516 34.615 0.00 0.00 0.00 2.59
3277 3732 9.099071 AGAACTCTTGGATATATTGCTGACTAT 57.901 33.333 0.00 0.00 0.00 2.12
3363 3824 1.958579 TGAACTTGCTGCAGATGCTTT 59.041 42.857 20.43 2.58 42.66 3.51
3484 3947 0.451783 CTCGCCCGCTTTTATGCTTT 59.548 50.000 0.00 0.00 0.00 3.51
3485 3948 0.170116 TCGCCCGCTTTTATGCTTTG 59.830 50.000 0.00 0.00 0.00 2.77
3486 3949 0.170116 CGCCCGCTTTTATGCTTTGA 59.830 50.000 0.00 0.00 0.00 2.69
3677 4143 1.143073 GGGGTAGCTTTTCATCCGGAT 59.857 52.381 12.38 12.38 0.00 4.18
3705 4171 6.934056 TGCATTTCAAATAACCTAGCACATT 58.066 32.000 0.00 0.00 0.00 2.71
3833 4386 4.503991 CCCTGCATTAGCTAGGTTCCTAAG 60.504 50.000 0.00 0.00 42.74 2.18
3834 4387 4.101741 CCTGCATTAGCTAGGTTCCTAAGT 59.898 45.833 0.00 0.00 42.74 2.24
3835 4388 5.277857 TGCATTAGCTAGGTTCCTAAGTC 57.722 43.478 0.00 0.00 42.74 3.01
3836 4389 4.101119 TGCATTAGCTAGGTTCCTAAGTCC 59.899 45.833 0.00 0.00 42.74 3.85
3837 4390 4.345547 GCATTAGCTAGGTTCCTAAGTCCT 59.654 45.833 0.00 0.00 37.91 3.85
3838 4391 5.539193 GCATTAGCTAGGTTCCTAAGTCCTA 59.461 44.000 0.00 0.00 37.91 2.94
3839 4392 6.041751 GCATTAGCTAGGTTCCTAAGTCCTAA 59.958 42.308 0.00 5.62 37.91 2.69
4000 4557 8.350852 ACAGTACTAGTTTATAACTGCACTCT 57.649 34.615 18.48 1.25 42.84 3.24
4058 4615 4.119136 GTTTGGTTACTTGCTGCAATTGT 58.881 39.130 16.38 13.46 0.00 2.71
4089 4646 2.161855 CTTGTTGCAGGTGCTCCAATA 58.838 47.619 7.70 0.00 42.66 1.90
4669 5266 7.184106 AGTGAAGTTATGTTACAACAACAACG 58.816 34.615 13.21 0.00 43.03 4.10
4733 11137 8.391106 GGTGAAATGAGTGAAGTTATGTCATAC 58.609 37.037 0.00 0.00 0.00 2.39
4734 11138 8.110612 GTGAAATGAGTGAAGTTATGTCATACG 58.889 37.037 0.00 0.00 0.00 3.06
4735 11139 7.817478 TGAAATGAGTGAAGTTATGTCATACGT 59.183 33.333 0.00 0.00 0.00 3.57
4920 15667 9.860898 GGTAAGACTCGGTTTTATTTCTTACTA 57.139 33.333 15.33 0.00 42.40 1.82
4980 15727 9.229784 CTTGAATAGACAAATTGTGTATGATGC 57.770 33.333 15.15 7.37 41.96 3.91
5149 15965 7.474398 AGACATACATCGACTTTGATTGATG 57.526 36.000 0.00 2.11 43.57 3.07
5485 16317 0.321210 CCACCGATGCCAACACACTA 60.321 55.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.196749 CTAGTGGTTGCATGCGTCTAG 58.803 52.381 14.09 14.55 0.00 2.43
3 4 1.659098 GTACTAGTGGTTGCATGCGTC 59.341 52.381 14.09 8.28 0.00 5.19
4 5 1.674817 GGTACTAGTGGTTGCATGCGT 60.675 52.381 14.09 4.49 0.00 5.24
5 6 1.006832 GGTACTAGTGGTTGCATGCG 58.993 55.000 14.09 0.00 0.00 4.73
6 7 1.737793 GTGGTACTAGTGGTTGCATGC 59.262 52.381 11.82 11.82 0.00 4.06
7 8 3.002791 CAGTGGTACTAGTGGTTGCATG 58.997 50.000 5.39 0.00 0.00 4.06
8 9 2.027192 CCAGTGGTACTAGTGGTTGCAT 60.027 50.000 21.83 0.00 36.58 3.96
9 10 1.346395 CCAGTGGTACTAGTGGTTGCA 59.654 52.381 21.83 0.00 36.58 4.08
10 11 1.621814 TCCAGTGGTACTAGTGGTTGC 59.378 52.381 26.96 0.00 41.12 4.17
11 12 2.353803 GCTCCAGTGGTACTAGTGGTTG 60.354 54.545 26.96 21.71 41.12 3.77
12 13 1.900486 GCTCCAGTGGTACTAGTGGTT 59.100 52.381 26.96 0.00 41.12 3.67
13 14 1.077334 AGCTCCAGTGGTACTAGTGGT 59.923 52.381 26.96 10.27 41.12 4.16
14 15 1.478510 CAGCTCCAGTGGTACTAGTGG 59.521 57.143 23.61 23.61 41.60 4.00
15 16 1.134965 GCAGCTCCAGTGGTACTAGTG 60.135 57.143 9.54 7.07 0.00 2.74
16 17 1.187087 GCAGCTCCAGTGGTACTAGT 58.813 55.000 9.54 0.00 0.00 2.57
17 18 1.479709 AGCAGCTCCAGTGGTACTAG 58.520 55.000 9.54 0.00 0.00 2.57
18 19 2.025226 ACTAGCAGCTCCAGTGGTACTA 60.025 50.000 9.54 4.44 0.00 1.82
19 20 1.272760 ACTAGCAGCTCCAGTGGTACT 60.273 52.381 9.54 4.92 0.00 2.73
20 21 1.134965 CACTAGCAGCTCCAGTGGTAC 60.135 57.143 15.26 2.35 36.79 3.34
21 22 1.186200 CACTAGCAGCTCCAGTGGTA 58.814 55.000 15.26 0.00 36.79 3.25
22 23 1.978473 CACTAGCAGCTCCAGTGGT 59.022 57.895 15.26 0.00 36.79 4.16
23 24 4.928398 CACTAGCAGCTCCAGTGG 57.072 61.111 15.26 1.40 36.79 4.00
24 25 1.449246 GCCACTAGCAGCTCCAGTG 60.449 63.158 15.90 15.90 42.97 3.66
25 26 2.985456 GCCACTAGCAGCTCCAGT 59.015 61.111 0.00 0.00 42.97 4.00
34 35 3.181967 CGTCGTGCTGCCACTAGC 61.182 66.667 0.00 0.00 43.95 3.42
35 36 2.507102 CCGTCGTGCTGCCACTAG 60.507 66.667 0.00 0.00 39.86 2.57
36 37 4.735132 GCCGTCGTGCTGCCACTA 62.735 66.667 0.00 0.00 39.86 2.74
46 47 4.783621 ATGCATGGCAGCCGTCGT 62.784 61.111 1.92 0.00 43.65 4.34
47 48 4.246206 CATGCATGGCAGCCGTCG 62.246 66.667 19.40 0.76 43.65 5.12
48 49 4.564116 GCATGCATGGCAGCCGTC 62.564 66.667 27.34 4.91 43.65 4.79
50 51 3.911698 ATGCATGCATGGCAGCCG 61.912 61.111 31.74 0.91 45.68 5.52
58 59 2.727392 GCCACCCACATGCATGCAT 61.727 57.895 27.46 27.46 37.08 3.96
59 60 3.383681 GCCACCCACATGCATGCA 61.384 61.111 26.53 25.04 0.00 3.96
60 61 4.151582 GGCCACCCACATGCATGC 62.152 66.667 26.53 11.82 0.00 4.06
61 62 0.756070 TATGGCCACCCACATGCATG 60.756 55.000 25.09 25.09 45.77 4.06
62 63 0.756442 GTATGGCCACCCACATGCAT 60.756 55.000 8.16 0.00 45.77 3.96
63 64 1.379710 GTATGGCCACCCACATGCA 60.380 57.895 8.16 0.00 45.77 3.96
64 65 2.127232 GGTATGGCCACCCACATGC 61.127 63.158 8.16 0.00 45.77 4.06
65 66 1.823470 CGGTATGGCCACCCACATG 60.823 63.158 20.37 7.35 45.77 3.21
66 67 2.595095 CGGTATGGCCACCCACAT 59.405 61.111 20.37 1.85 45.77 3.21
67 68 4.418328 GCGGTATGGCCACCCACA 62.418 66.667 20.37 0.00 45.77 4.17
83 84 3.775654 AGTAGCTCCGCCACTGGC 61.776 66.667 10.35 10.35 46.75 4.85
84 85 2.185350 CAGTAGCTCCGCCACTGG 59.815 66.667 5.78 0.00 36.79 4.00
85 86 1.153745 GACAGTAGCTCCGCCACTG 60.154 63.158 11.25 11.25 44.20 3.66
86 87 0.972983 ATGACAGTAGCTCCGCCACT 60.973 55.000 0.00 0.00 0.00 4.00
87 88 0.108138 AATGACAGTAGCTCCGCCAC 60.108 55.000 0.00 0.00 0.00 5.01
88 89 0.613260 AAATGACAGTAGCTCCGCCA 59.387 50.000 0.00 0.00 0.00 5.69
89 90 1.134670 AGAAATGACAGTAGCTCCGCC 60.135 52.381 0.00 0.00 0.00 6.13
90 91 2.159170 AGAGAAATGACAGTAGCTCCGC 60.159 50.000 0.00 0.00 0.00 5.54
91 92 3.443037 CAGAGAAATGACAGTAGCTCCG 58.557 50.000 0.00 0.00 0.00 4.63
92 93 3.431486 CCCAGAGAAATGACAGTAGCTCC 60.431 52.174 0.00 0.00 0.00 4.70
93 94 3.791245 CCCAGAGAAATGACAGTAGCTC 58.209 50.000 0.00 0.00 0.00 4.09
94 95 2.093235 GCCCAGAGAAATGACAGTAGCT 60.093 50.000 0.00 0.00 0.00 3.32
95 96 2.284190 GCCCAGAGAAATGACAGTAGC 58.716 52.381 0.00 0.00 0.00 3.58
96 97 3.529533 CTGCCCAGAGAAATGACAGTAG 58.470 50.000 0.00 0.00 0.00 2.57
97 98 2.237143 CCTGCCCAGAGAAATGACAGTA 59.763 50.000 0.00 0.00 0.00 2.74
98 99 1.004044 CCTGCCCAGAGAAATGACAGT 59.996 52.381 0.00 0.00 0.00 3.55
99 100 1.747709 CCTGCCCAGAGAAATGACAG 58.252 55.000 0.00 0.00 0.00 3.51
100 101 0.322816 GCCTGCCCAGAGAAATGACA 60.323 55.000 0.00 0.00 0.00 3.58
101 102 1.034292 GGCCTGCCCAGAGAAATGAC 61.034 60.000 0.00 0.00 0.00 3.06
102 103 1.304282 GGCCTGCCCAGAGAAATGA 59.696 57.895 0.00 0.00 0.00 2.57
103 104 0.612732 TTGGCCTGCCCAGAGAAATG 60.613 55.000 3.32 0.00 46.39 2.32
104 105 0.114954 TTTGGCCTGCCCAGAGAAAT 59.885 50.000 3.32 0.00 46.39 2.17
105 106 0.827507 GTTTGGCCTGCCCAGAGAAA 60.828 55.000 3.32 0.00 46.39 2.52
106 107 1.228552 GTTTGGCCTGCCCAGAGAA 60.229 57.895 3.32 0.00 46.39 2.87
107 108 2.416107 CTGTTTGGCCTGCCCAGAGA 62.416 60.000 3.32 0.00 46.39 3.10
108 109 1.975407 CTGTTTGGCCTGCCCAGAG 60.975 63.158 3.32 0.00 46.39 3.35
109 110 2.115910 CTGTTTGGCCTGCCCAGA 59.884 61.111 3.32 0.00 46.39 3.86
110 111 2.993264 CCTGTTTGGCCTGCCCAG 60.993 66.667 3.32 5.87 46.39 4.45
111 112 3.808218 GACCTGTTTGGCCTGCCCA 62.808 63.158 3.32 0.00 43.51 5.36
112 113 2.991540 GACCTGTTTGGCCTGCCC 60.992 66.667 3.32 0.00 40.22 5.36
113 114 2.203480 TGACCTGTTTGGCCTGCC 60.203 61.111 3.32 0.00 40.22 4.85
114 115 2.270986 CCTGACCTGTTTGGCCTGC 61.271 63.158 3.32 0.00 40.22 4.85
115 116 0.468029 AACCTGACCTGTTTGGCCTG 60.468 55.000 3.32 0.00 40.22 4.85
116 117 0.261696 AAACCTGACCTGTTTGGCCT 59.738 50.000 3.32 0.00 40.22 5.19
117 118 1.886542 CTAAACCTGACCTGTTTGGCC 59.113 52.381 0.00 0.00 40.22 5.36
118 119 2.858745 TCTAAACCTGACCTGTTTGGC 58.141 47.619 0.00 0.00 40.22 4.52
119 120 4.461198 ACTTCTAAACCTGACCTGTTTGG 58.539 43.478 0.00 0.00 36.63 3.28
120 121 5.469084 GGTACTTCTAAACCTGACCTGTTTG 59.531 44.000 0.00 0.00 36.63 2.93
121 122 5.131475 TGGTACTTCTAAACCTGACCTGTTT 59.869 40.000 0.00 0.00 39.19 2.83
122 123 4.657039 TGGTACTTCTAAACCTGACCTGTT 59.343 41.667 0.00 0.00 36.67 3.16
123 124 4.228824 TGGTACTTCTAAACCTGACCTGT 58.771 43.478 0.00 0.00 36.67 4.00
124 125 4.884668 TGGTACTTCTAAACCTGACCTG 57.115 45.455 0.00 0.00 36.67 4.00
125 126 7.563724 TTAATGGTACTTCTAAACCTGACCT 57.436 36.000 0.00 0.00 36.67 3.85
126 127 8.625786 TTTTAATGGTACTTCTAAACCTGACC 57.374 34.615 0.00 0.00 36.67 4.02
139 140 9.715121 TCGTAAGAGTGAAATTTTAATGGTACT 57.285 29.630 0.00 0.00 45.01 2.73
159 160 8.407064 AGAATAGTGTTGAATCTAGGTCGTAAG 58.593 37.037 0.00 0.00 0.00 2.34
160 161 8.188799 CAGAATAGTGTTGAATCTAGGTCGTAA 58.811 37.037 0.00 0.00 0.00 3.18
161 162 7.201794 CCAGAATAGTGTTGAATCTAGGTCGTA 60.202 40.741 0.00 0.00 0.00 3.43
162 163 6.405953 CCAGAATAGTGTTGAATCTAGGTCGT 60.406 42.308 0.00 0.00 0.00 4.34
163 164 5.980116 CCAGAATAGTGTTGAATCTAGGTCG 59.020 44.000 0.00 0.00 0.00 4.79
164 165 6.981559 GTCCAGAATAGTGTTGAATCTAGGTC 59.018 42.308 0.00 0.00 0.00 3.85
165 166 6.440647 TGTCCAGAATAGTGTTGAATCTAGGT 59.559 38.462 0.00 0.00 0.00 3.08
166 167 6.878317 TGTCCAGAATAGTGTTGAATCTAGG 58.122 40.000 0.00 0.00 0.00 3.02
167 168 8.777865 TTTGTCCAGAATAGTGTTGAATCTAG 57.222 34.615 0.00 0.00 0.00 2.43
168 169 9.567776 TTTTTGTCCAGAATAGTGTTGAATCTA 57.432 29.630 0.00 0.00 0.00 1.98
169 170 8.463930 TTTTTGTCCAGAATAGTGTTGAATCT 57.536 30.769 0.00 0.00 0.00 2.40
170 171 9.346725 GATTTTTGTCCAGAATAGTGTTGAATC 57.653 33.333 0.00 0.00 0.00 2.52
171 172 9.082313 AGATTTTTGTCCAGAATAGTGTTGAAT 57.918 29.630 0.00 0.00 0.00 2.57
172 173 8.463930 AGATTTTTGTCCAGAATAGTGTTGAA 57.536 30.769 0.00 0.00 0.00 2.69
173 174 9.219603 CTAGATTTTTGTCCAGAATAGTGTTGA 57.780 33.333 0.00 0.00 0.00 3.18
174 175 9.003658 ACTAGATTTTTGTCCAGAATAGTGTTG 57.996 33.333 0.00 0.00 0.00 3.33
175 176 9.574516 AACTAGATTTTTGTCCAGAATAGTGTT 57.425 29.630 0.00 0.00 0.00 3.32
176 177 9.003658 CAACTAGATTTTTGTCCAGAATAGTGT 57.996 33.333 0.00 0.00 0.00 3.55
177 178 8.454106 CCAACTAGATTTTTGTCCAGAATAGTG 58.546 37.037 0.00 0.00 0.00 2.74
178 179 7.611855 CCCAACTAGATTTTTGTCCAGAATAGT 59.388 37.037 0.00 0.00 0.00 2.12
179 180 7.415653 GCCCAACTAGATTTTTGTCCAGAATAG 60.416 40.741 0.00 0.00 0.00 1.73
180 181 6.377146 GCCCAACTAGATTTTTGTCCAGAATA 59.623 38.462 0.00 0.00 0.00 1.75
181 182 5.185828 GCCCAACTAGATTTTTGTCCAGAAT 59.814 40.000 0.00 0.00 0.00 2.40
182 183 4.522789 GCCCAACTAGATTTTTGTCCAGAA 59.477 41.667 0.00 0.00 0.00 3.02
183 184 4.079253 GCCCAACTAGATTTTTGTCCAGA 58.921 43.478 0.00 0.00 0.00 3.86
184 185 3.826157 TGCCCAACTAGATTTTTGTCCAG 59.174 43.478 0.00 0.00 0.00 3.86
185 186 3.826157 CTGCCCAACTAGATTTTTGTCCA 59.174 43.478 0.00 0.00 0.00 4.02
186 187 3.193479 CCTGCCCAACTAGATTTTTGTCC 59.807 47.826 0.00 0.00 0.00 4.02
187 188 3.193479 CCCTGCCCAACTAGATTTTTGTC 59.807 47.826 0.00 0.00 0.00 3.18
188 189 3.165071 CCCTGCCCAACTAGATTTTTGT 58.835 45.455 0.00 0.00 0.00 2.83
189 190 2.094026 GCCCTGCCCAACTAGATTTTTG 60.094 50.000 0.00 0.00 0.00 2.44
190 191 2.179427 GCCCTGCCCAACTAGATTTTT 58.821 47.619 0.00 0.00 0.00 1.94
191 192 1.852633 GCCCTGCCCAACTAGATTTT 58.147 50.000 0.00 0.00 0.00 1.82
192 193 0.394352 CGCCCTGCCCAACTAGATTT 60.394 55.000 0.00 0.00 0.00 2.17
193 194 1.224592 CGCCCTGCCCAACTAGATT 59.775 57.895 0.00 0.00 0.00 2.40
194 195 2.746375 CCGCCCTGCCCAACTAGAT 61.746 63.158 0.00 0.00 0.00 1.98
195 196 3.399181 CCGCCCTGCCCAACTAGA 61.399 66.667 0.00 0.00 0.00 2.43
196 197 4.489771 CCCGCCCTGCCCAACTAG 62.490 72.222 0.00 0.00 0.00 2.57
222 223 1.606313 GCTAGGCTGGGCAAAACCA 60.606 57.895 0.00 0.00 42.05 3.67
223 224 0.900182 AAGCTAGGCTGGGCAAAACC 60.900 55.000 14.76 0.00 39.62 3.27
224 225 0.528017 GAAGCTAGGCTGGGCAAAAC 59.472 55.000 14.76 2.32 39.62 2.43
225 226 0.112218 TGAAGCTAGGCTGGGCAAAA 59.888 50.000 14.76 0.00 39.62 2.44
226 227 0.609131 GTGAAGCTAGGCTGGGCAAA 60.609 55.000 14.76 0.06 39.62 3.68
227 228 1.002134 GTGAAGCTAGGCTGGGCAA 60.002 57.895 14.76 0.36 39.62 4.52
228 229 2.671070 GTGAAGCTAGGCTGGGCA 59.329 61.111 14.76 0.00 39.62 5.36
229 230 2.512515 CGTGAAGCTAGGCTGGGC 60.513 66.667 0.00 1.13 39.62 5.36
230 231 1.153549 GTCGTGAAGCTAGGCTGGG 60.154 63.158 0.00 0.00 39.62 4.45
231 232 0.459237 CAGTCGTGAAGCTAGGCTGG 60.459 60.000 0.00 0.00 39.62 4.85
232 233 1.080995 GCAGTCGTGAAGCTAGGCTG 61.081 60.000 0.00 8.17 39.62 4.85
233 234 1.216710 GCAGTCGTGAAGCTAGGCT 59.783 57.895 0.00 0.00 42.56 4.58
234 235 0.460987 ATGCAGTCGTGAAGCTAGGC 60.461 55.000 0.00 0.00 0.00 3.93
235 236 2.159240 TGTATGCAGTCGTGAAGCTAGG 60.159 50.000 0.00 0.00 0.00 3.02
236 237 3.150848 TGTATGCAGTCGTGAAGCTAG 57.849 47.619 0.00 0.00 0.00 3.42
237 238 3.586100 TTGTATGCAGTCGTGAAGCTA 57.414 42.857 0.00 0.00 0.00 3.32
238 239 2.455674 TTGTATGCAGTCGTGAAGCT 57.544 45.000 0.00 0.00 0.00 3.74
239 240 3.747099 ATTTGTATGCAGTCGTGAAGC 57.253 42.857 0.00 0.00 0.00 3.86
240 241 4.561213 TCGTATTTGTATGCAGTCGTGAAG 59.439 41.667 0.00 0.00 0.00 3.02
241 242 4.325204 GTCGTATTTGTATGCAGTCGTGAA 59.675 41.667 0.00 0.00 0.00 3.18
242 243 3.855379 GTCGTATTTGTATGCAGTCGTGA 59.145 43.478 0.00 0.00 0.00 4.35
243 244 3.610677 TGTCGTATTTGTATGCAGTCGTG 59.389 43.478 0.00 0.00 0.00 4.35
244 245 3.840468 TGTCGTATTTGTATGCAGTCGT 58.160 40.909 0.00 0.00 0.00 4.34
245 246 4.833469 TTGTCGTATTTGTATGCAGTCG 57.167 40.909 0.00 0.00 0.00 4.18
246 247 9.210426 CTTAAATTGTCGTATTTGTATGCAGTC 57.790 33.333 0.00 0.00 0.00 3.51
247 248 8.941977 TCTTAAATTGTCGTATTTGTATGCAGT 58.058 29.630 0.00 0.00 0.00 4.40
248 249 9.767684 TTCTTAAATTGTCGTATTTGTATGCAG 57.232 29.630 0.00 0.00 0.00 4.41
259 260 8.164153 GCTTGTACGATTTCTTAAATTGTCGTA 58.836 33.333 8.22 5.82 42.92 3.43
260 261 7.013529 GCTTGTACGATTTCTTAAATTGTCGT 58.986 34.615 8.22 6.63 42.92 4.34
261 262 6.464834 GGCTTGTACGATTTCTTAAATTGTCG 59.535 38.462 8.22 1.50 42.92 4.35
262 263 6.464834 CGGCTTGTACGATTTCTTAAATTGTC 59.535 38.462 8.22 3.26 42.92 3.18
263 264 6.148150 TCGGCTTGTACGATTTCTTAAATTGT 59.852 34.615 9.56 9.56 45.23 2.71
264 265 6.539324 TCGGCTTGTACGATTTCTTAAATTG 58.461 36.000 0.00 0.00 38.09 2.32
265 266 6.730960 TCGGCTTGTACGATTTCTTAAATT 57.269 33.333 0.00 0.00 35.12 1.82
292 293 3.807622 TCGCTCTCGTTTCATCAGTTTTT 59.192 39.130 0.00 0.00 36.96 1.94
293 294 3.184581 GTCGCTCTCGTTTCATCAGTTTT 59.815 43.478 0.00 0.00 36.96 2.43
294 295 2.731976 GTCGCTCTCGTTTCATCAGTTT 59.268 45.455 0.00 0.00 36.96 2.66
295 296 2.029828 AGTCGCTCTCGTTTCATCAGTT 60.030 45.455 0.00 0.00 36.96 3.16
296 297 1.542030 AGTCGCTCTCGTTTCATCAGT 59.458 47.619 0.00 0.00 36.96 3.41
297 298 1.916651 CAGTCGCTCTCGTTTCATCAG 59.083 52.381 0.00 0.00 36.96 2.90
298 299 1.539827 TCAGTCGCTCTCGTTTCATCA 59.460 47.619 0.00 0.00 36.96 3.07
299 300 2.159503 TCTCAGTCGCTCTCGTTTCATC 60.160 50.000 0.00 0.00 36.96 2.92
300 301 1.813178 TCTCAGTCGCTCTCGTTTCAT 59.187 47.619 0.00 0.00 36.96 2.57
301 302 1.235724 TCTCAGTCGCTCTCGTTTCA 58.764 50.000 0.00 0.00 36.96 2.69
302 303 2.096819 AGATCTCAGTCGCTCTCGTTTC 59.903 50.000 0.00 0.00 36.96 2.78
303 304 2.088423 AGATCTCAGTCGCTCTCGTTT 58.912 47.619 0.00 0.00 36.96 3.60
304 305 1.745232 AGATCTCAGTCGCTCTCGTT 58.255 50.000 0.00 0.00 36.96 3.85
305 306 2.605837 TAGATCTCAGTCGCTCTCGT 57.394 50.000 0.00 0.00 36.96 4.18
306 307 4.033932 CCATATAGATCTCAGTCGCTCTCG 59.966 50.000 0.00 0.00 0.00 4.04
307 308 4.335315 CCCATATAGATCTCAGTCGCTCTC 59.665 50.000 0.00 0.00 0.00 3.20
308 309 4.269183 CCCATATAGATCTCAGTCGCTCT 58.731 47.826 0.00 0.00 0.00 4.09
309 310 3.181491 GCCCATATAGATCTCAGTCGCTC 60.181 52.174 0.00 0.00 0.00 5.03
310 311 2.757868 GCCCATATAGATCTCAGTCGCT 59.242 50.000 0.00 0.00 0.00 4.93
311 312 2.159170 GGCCCATATAGATCTCAGTCGC 60.159 54.545 0.00 0.00 0.00 5.19
312 313 2.098280 CGGCCCATATAGATCTCAGTCG 59.902 54.545 0.00 0.00 0.00 4.18
313 314 2.428890 CCGGCCCATATAGATCTCAGTC 59.571 54.545 0.00 0.00 0.00 3.51
314 315 2.461695 CCGGCCCATATAGATCTCAGT 58.538 52.381 0.00 0.00 0.00 3.41
315 316 1.137872 GCCGGCCCATATAGATCTCAG 59.862 57.143 18.11 0.00 0.00 3.35
316 317 1.195115 GCCGGCCCATATAGATCTCA 58.805 55.000 18.11 0.00 0.00 3.27
317 318 0.466124 GGCCGGCCCATATAGATCTC 59.534 60.000 36.64 4.14 0.00 2.75
318 319 2.609046 GGCCGGCCCATATAGATCT 58.391 57.895 36.64 0.00 0.00 2.75
335 336 3.649277 CTGAAGGCGTCCGTCTGGG 62.649 68.421 11.56 1.72 33.31 4.45
336 337 2.125912 CTGAAGGCGTCCGTCTGG 60.126 66.667 11.56 3.54 33.31 3.86
337 338 2.125912 CCTGAAGGCGTCCGTCTG 60.126 66.667 11.56 10.75 33.31 3.51
347 348 3.130160 GAGCTTGGCGCCTGAAGG 61.130 66.667 29.70 9.23 40.39 3.46
348 349 3.130160 GGAGCTTGGCGCCTGAAG 61.130 66.667 29.70 23.94 44.91 3.02
358 359 3.950794 TTACAGCGCCCGGAGCTTG 62.951 63.158 19.51 16.57 44.06 4.01
359 360 3.665675 CTTACAGCGCCCGGAGCTT 62.666 63.158 19.51 13.85 44.06 3.74
370 371 0.108329 TCCTAACCAGCGCTTACAGC 60.108 55.000 7.50 0.00 38.02 4.40
371 372 1.471676 CCTCCTAACCAGCGCTTACAG 60.472 57.143 7.50 2.26 0.00 2.74
372 373 0.535335 CCTCCTAACCAGCGCTTACA 59.465 55.000 7.50 0.00 0.00 2.41
373 374 0.810426 GCCTCCTAACCAGCGCTTAC 60.810 60.000 7.50 0.00 0.00 2.34
374 375 1.520666 GCCTCCTAACCAGCGCTTA 59.479 57.895 7.50 0.00 0.00 3.09
375 376 2.269241 GCCTCCTAACCAGCGCTT 59.731 61.111 7.50 0.00 0.00 4.68
376 377 3.787001 GGCCTCCTAACCAGCGCT 61.787 66.667 2.64 2.64 0.00 5.92
377 378 4.858680 GGGCCTCCTAACCAGCGC 62.859 72.222 0.84 0.00 0.00 5.92
378 379 4.176752 GGGGCCTCCTAACCAGCG 62.177 72.222 0.84 0.00 0.00 5.18
379 380 3.015145 TGGGGCCTCCTAACCAGC 61.015 66.667 0.00 0.00 36.20 4.85
380 381 1.915078 CTGTGGGGCCTCCTAACCAG 61.915 65.000 0.00 3.24 36.20 4.00
381 382 1.923395 CTGTGGGGCCTCCTAACCA 60.923 63.158 0.00 0.00 36.20 3.67
382 383 1.923909 ACTGTGGGGCCTCCTAACC 60.924 63.158 0.00 0.00 36.20 2.85
383 384 1.198759 TCACTGTGGGGCCTCCTAAC 61.199 60.000 0.00 0.00 36.20 2.34
384 385 1.159905 TCACTGTGGGGCCTCCTAA 59.840 57.895 0.00 0.00 36.20 2.69
385 386 1.612442 GTCACTGTGGGGCCTCCTA 60.612 63.158 0.00 0.00 36.20 2.94
386 387 2.930562 GTCACTGTGGGGCCTCCT 60.931 66.667 0.00 0.00 36.20 3.69
387 388 4.035102 GGTCACTGTGGGGCCTCC 62.035 72.222 0.00 0.72 0.00 4.30
388 389 4.035102 GGGTCACTGTGGGGCCTC 62.035 72.222 8.11 0.00 0.00 4.70
389 390 4.918360 TGGGTCACTGTGGGGCCT 62.918 66.667 8.11 0.00 0.00 5.19
390 391 4.660938 GTGGGTCACTGTGGGGCC 62.661 72.222 8.11 0.00 0.00 5.80
391 392 1.562672 ATAGTGGGTCACTGTGGGGC 61.563 60.000 8.11 0.00 45.01 5.80
392 393 0.253044 CATAGTGGGTCACTGTGGGG 59.747 60.000 14.32 0.00 45.45 4.96
393 394 3.861341 CATAGTGGGTCACTGTGGG 57.139 57.895 14.32 0.00 45.45 4.61
404 405 2.125310 TTCACGCGCCCATAGTGG 60.125 61.111 5.73 0.00 36.60 4.00
405 406 2.813179 GCTTCACGCGCCCATAGTG 61.813 63.158 5.73 3.56 37.24 2.74
406 407 2.511600 GCTTCACGCGCCCATAGT 60.512 61.111 5.73 0.00 0.00 2.12
417 418 1.134670 ACCTCCTATTCAGCGCTTCAC 60.135 52.381 7.50 0.00 0.00 3.18
418 419 1.195115 ACCTCCTATTCAGCGCTTCA 58.805 50.000 7.50 0.00 0.00 3.02
419 420 3.580731 GATACCTCCTATTCAGCGCTTC 58.419 50.000 7.50 0.00 0.00 3.86
420 421 2.029828 CGATACCTCCTATTCAGCGCTT 60.030 50.000 7.50 0.00 0.00 4.68
421 422 1.542030 CGATACCTCCTATTCAGCGCT 59.458 52.381 2.64 2.64 0.00 5.92
422 423 1.269998 ACGATACCTCCTATTCAGCGC 59.730 52.381 0.00 0.00 0.00 5.92
423 424 4.761235 TTACGATACCTCCTATTCAGCG 57.239 45.455 0.00 0.00 0.00 5.18
424 425 9.141400 CTTTTATTACGATACCTCCTATTCAGC 57.859 37.037 0.00 0.00 0.00 4.26
430 431 9.412460 TGAGTTCTTTTATTACGATACCTCCTA 57.588 33.333 0.00 0.00 0.00 2.94
431 432 8.302515 TGAGTTCTTTTATTACGATACCTCCT 57.697 34.615 0.00 0.00 0.00 3.69
432 433 8.937634 TTGAGTTCTTTTATTACGATACCTCC 57.062 34.615 0.00 0.00 0.00 4.30
491 492 5.416013 GGCCTGTAAGTTCAAAAATAGCTCT 59.584 40.000 0.00 0.00 0.00 4.09
494 495 4.219725 TGGGCCTGTAAGTTCAAAAATAGC 59.780 41.667 4.53 0.00 0.00 2.97
495 496 5.105756 CCTGGGCCTGTAAGTTCAAAAATAG 60.106 44.000 4.53 0.00 0.00 1.73
496 497 4.770010 CCTGGGCCTGTAAGTTCAAAAATA 59.230 41.667 4.53 0.00 0.00 1.40
497 498 3.578282 CCTGGGCCTGTAAGTTCAAAAAT 59.422 43.478 4.53 0.00 0.00 1.82
498 499 2.962421 CCTGGGCCTGTAAGTTCAAAAA 59.038 45.455 4.53 0.00 0.00 1.94
499 500 2.593026 CCTGGGCCTGTAAGTTCAAAA 58.407 47.619 4.53 0.00 0.00 2.44
500 501 1.821666 GCCTGGGCCTGTAAGTTCAAA 60.822 52.381 4.53 0.00 34.56 2.69
501 502 0.251165 GCCTGGGCCTGTAAGTTCAA 60.251 55.000 4.53 0.00 34.56 2.69
927 973 2.207924 CCCCCTCGTTATAGCGGCT 61.208 63.158 7.98 7.98 0.00 5.52
978 1033 1.077716 GGATTTGGACGGGGGAGTG 60.078 63.158 0.00 0.00 0.00 3.51
1010 1065 1.971357 AGTCGGCGATTAGGATGGAAT 59.029 47.619 14.79 0.00 0.00 3.01
1028 1083 2.027192 ACTCATCACGCCCATACAAAGT 60.027 45.455 0.00 0.00 0.00 2.66
1030 1085 2.779755 ACTCATCACGCCCATACAAA 57.220 45.000 0.00 0.00 0.00 2.83
1031 1086 2.627945 GAACTCATCACGCCCATACAA 58.372 47.619 0.00 0.00 0.00 2.41
1032 1087 1.134521 GGAACTCATCACGCCCATACA 60.135 52.381 0.00 0.00 0.00 2.29
1033 1088 1.139058 AGGAACTCATCACGCCCATAC 59.861 52.381 0.00 0.00 0.00 2.39
1034 1089 1.496060 AGGAACTCATCACGCCCATA 58.504 50.000 0.00 0.00 0.00 2.74
1035 1090 2.300996 AGGAACTCATCACGCCCAT 58.699 52.632 0.00 0.00 0.00 4.00
1089 1144 2.125106 GGAATTCTCGCCCACGCT 60.125 61.111 5.23 0.00 39.84 5.07
1196 1263 4.019983 TCCACGAGGAAGGAGAGC 57.980 61.111 0.00 0.00 42.23 4.09
1247 1314 7.277205 CGTCGATCTCAAGATAAAAAGCATAC 58.723 38.462 0.00 0.00 34.37 2.39
1274 1461 0.814410 TAAACCAAACCAGCACGCGA 60.814 50.000 15.93 0.00 0.00 5.87
1452 1639 2.957402 AGTTGTTGAAGATCCTGGCA 57.043 45.000 0.00 0.00 0.00 4.92
1503 1690 2.112297 TCCTTGTTGCCGGTGACC 59.888 61.111 1.90 0.00 0.00 4.02
1507 1694 2.268076 GCATGTCCTTGTTGCCGGT 61.268 57.895 1.90 0.00 0.00 5.28
1888 2102 0.469144 GGGGGCCTTGTTTCTTCACA 60.469 55.000 0.84 0.00 0.00 3.58
2347 2788 3.947196 AGTTCATCAGTGCAAACAGAACA 59.053 39.130 17.13 0.00 37.07 3.18
2348 2789 4.558538 AGTTCATCAGTGCAAACAGAAC 57.441 40.909 10.53 10.53 35.40 3.01
2349 2790 4.398988 ACAAGTTCATCAGTGCAAACAGAA 59.601 37.500 0.00 0.00 0.00 3.02
2350 2791 3.947196 ACAAGTTCATCAGTGCAAACAGA 59.053 39.130 0.00 0.00 0.00 3.41
2351 2792 4.039703 CACAAGTTCATCAGTGCAAACAG 58.960 43.478 0.00 0.00 0.00 3.16
2961 3415 8.019669 GTCGTACATTTGTTTACAGAGAGAGTA 58.980 37.037 0.00 0.00 0.00 2.59
2962 3416 6.862090 GTCGTACATTTGTTTACAGAGAGAGT 59.138 38.462 0.00 0.00 0.00 3.24
2984 3438 7.689953 AATGTAATAGTAGCCTAAAACGTCG 57.310 36.000 0.00 0.00 0.00 5.12
3149 3603 5.556355 TCTCAAAGATATGCTGCACAAAG 57.444 39.130 3.57 0.00 0.00 2.77
3395 3856 7.771183 TGGACTTTAACATTATCTTTGGATGC 58.229 34.615 0.00 0.00 33.71 3.91
3402 3863 6.663093 TGTGGCATGGACTTTAACATTATCTT 59.337 34.615 0.00 0.00 0.00 2.40
3484 3947 1.347707 GCGGATGGAGGGTTATCATCA 59.652 52.381 0.00 0.00 39.07 3.07
3485 3948 1.347707 TGCGGATGGAGGGTTATCATC 59.652 52.381 0.00 0.00 37.23 2.92
3486 3949 1.072331 GTGCGGATGGAGGGTTATCAT 59.928 52.381 0.00 0.00 0.00 2.45
3677 4143 5.714333 TGCTAGGTTATTTGAAATGCAGGAA 59.286 36.000 0.00 0.00 0.00 3.36
3705 4171 0.324943 GCCCTACAAACAGAGGCAGA 59.675 55.000 0.00 0.00 43.32 4.26
3833 4386 1.084289 GGGCAACGATGTGTTAGGAC 58.916 55.000 0.00 0.00 39.29 3.85
3834 4387 0.035820 GGGGCAACGATGTGTTAGGA 60.036 55.000 0.00 0.00 39.29 2.94
3835 4388 0.322098 TGGGGCAACGATGTGTTAGG 60.322 55.000 0.00 0.00 39.29 2.69
3836 4389 0.802494 GTGGGGCAACGATGTGTTAG 59.198 55.000 0.00 0.00 39.29 2.34
3837 4390 0.398696 AGTGGGGCAACGATGTGTTA 59.601 50.000 0.00 0.00 39.29 2.41
3838 4391 0.467290 AAGTGGGGCAACGATGTGTT 60.467 50.000 0.00 0.00 43.09 3.32
3839 4392 0.467290 AAAGTGGGGCAACGATGTGT 60.467 50.000 0.00 0.00 37.60 3.72
4058 4615 4.013728 ACCTGCAACAAGTTGACAGTTAA 58.986 39.130 23.03 0.00 42.93 2.01
4277 4847 8.806429 AACATGTTATCTATGGTGAACATTGA 57.194 30.769 9.97 0.00 43.61 2.57
4669 5266 4.341235 ACTTGTTTGGGACTAAAGGCTTTC 59.659 41.667 17.13 1.89 0.00 2.62
4740 15487 7.877612 CCCAAGCATTAAAAACTGGATTAACTT 59.122 33.333 0.00 0.00 0.00 2.66
4920 15667 4.578871 TGCTATTCATGCACAACAGTACT 58.421 39.130 0.00 0.00 35.31 2.73
4980 15727 3.126831 GGATGCAGTCTTCTATCAACGG 58.873 50.000 0.00 0.00 0.00 4.44
5149 15965 5.125417 TGTCATTGTAGGAATTGGCTTAAGC 59.875 40.000 19.53 19.53 41.14 3.09
5233 16057 4.363999 CCGTTACAGATCAATCAGAGACC 58.636 47.826 0.00 0.00 0.00 3.85
5276 16100 9.950680 AAAACACTACAAATTCATAACAGTCAG 57.049 29.630 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.