Multiple sequence alignment - TraesCS2D01G416400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G416400 chr2D 100.000 5588 0 0 1 5588 530253620 530259207 0.000000e+00 10320
1 TraesCS2D01G416400 chr2D 93.750 336 21 0 1 336 114626417 114626082 6.460000e-139 505
2 TraesCS2D01G416400 chr2D 93.413 334 22 0 3 336 170580734 170580401 3.890000e-136 496
3 TraesCS2D01G416400 chr2D 81.008 595 67 21 4020 4589 531259393 531259966 1.110000e-116 431
4 TraesCS2D01G416400 chr2D 95.392 217 10 0 5372 5588 531263041 531263257 4.140000e-91 346
5 TraesCS2D01G416400 chr2D 80.198 202 40 0 5381 5582 531348047 531348248 9.700000e-33 152
6 TraesCS2D01G416400 chr2D 88.800 125 7 6 5092 5210 530258667 530258790 4.510000e-31 147
7 TraesCS2D01G416400 chr2D 88.800 125 7 6 5048 5171 530258711 530258829 4.510000e-31 147
8 TraesCS2D01G416400 chr2D 90.588 85 4 3 5048 5131 531262746 531262827 5.920000e-20 110
9 TraesCS2D01G416400 chr2D 91.250 80 2 4 4743 4818 615384286 615384208 2.750000e-18 104
10 TraesCS2D01G416400 chr2A 96.296 3915 88 13 753 4661 675075651 675079514 0.000000e+00 6373
11 TraesCS2D01G416400 chr2A 95.427 503 17 3 5092 5588 675079807 675080309 0.000000e+00 797
12 TraesCS2D01G416400 chr2A 94.087 389 11 4 4785 5171 675079553 675079931 1.040000e-161 580
13 TraesCS2D01G416400 chr2A 81.513 595 64 21 4020 4589 675745335 675745908 1.100000e-121 448
14 TraesCS2D01G416400 chr2A 95.392 217 10 0 5372 5588 675746897 675747113 4.140000e-91 346
15 TraesCS2D01G416400 chr2A 84.158 202 20 9 4743 4935 745392975 745392777 9.560000e-43 185
16 TraesCS2D01G416400 chr2A 79.703 202 41 0 5381 5582 675896490 675896691 4.510000e-31 147
17 TraesCS2D01G416400 chr2B 96.873 3550 90 11 806 4346 630131275 630134812 0.000000e+00 5921
18 TraesCS2D01G416400 chr2B 92.566 834 20 8 4345 5172 630134925 630135722 0.000000e+00 1158
19 TraesCS2D01G416400 chr2B 91.992 487 30 4 338 820 630130777 630131258 0.000000e+00 675
20 TraesCS2D01G416400 chr2B 89.066 503 28 5 5092 5588 630135598 630136079 2.880000e-167 599
21 TraesCS2D01G416400 chr2B 79.840 625 63 25 3993 4589 631100458 631101047 1.130000e-106 398
22 TraesCS2D01G416400 chr2B 91.827 208 17 0 5381 5588 631101849 631102056 1.970000e-74 291
23 TraesCS2D01G416400 chr2B 82.843 204 23 8 4743 4935 749803404 749803202 7.440000e-39 172
24 TraesCS2D01G416400 chr2B 81.188 202 38 0 5381 5582 631202803 631203004 4.480000e-36 163
25 TraesCS2D01G416400 chr2B 89.412 85 5 3 5048 5131 631101550 631101631 2.750000e-18 104
26 TraesCS2D01G416400 chr1D 97.024 336 10 0 1 336 269968486 269968151 2.920000e-157 566
27 TraesCS2D01G416400 chr1D 95.238 336 16 0 1 336 269927893 269927558 2.960000e-147 532
28 TraesCS2D01G416400 chr7D 95.522 335 14 1 6 339 457254768 457254434 8.240000e-148 534
29 TraesCS2D01G416400 chr7D 94.345 336 17 1 1 336 457279282 457278949 1.070000e-141 514
30 TraesCS2D01G416400 chr7D 94.048 336 20 0 1 336 630542049 630541714 1.390000e-140 510
31 TraesCS2D01G416400 chrUn 94.940 336 17 0 1 336 114198679 114198344 1.380000e-145 527
32 TraesCS2D01G416400 chrUn 94.643 336 18 0 1 336 114232247 114231912 6.420000e-144 521
33 TraesCS2D01G416400 chr4A 86.253 451 47 8 4156 4602 551215028 551215467 5.070000e-130 475
34 TraesCS2D01G416400 chr4D 85.809 451 48 8 4156 4602 47289079 47288641 1.100000e-126 464
35 TraesCS2D01G416400 chr4B 84.583 240 25 7 4152 4391 68670661 68670434 1.570000e-55 228
36 TraesCS2D01G416400 chr3B 88.119 101 5 4 5494 5588 732058601 732058700 4.580000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G416400 chr2D 530253620 530259207 5587 False 3538.000000 10320 92.533333 1 5588 3 chr2D.!!$F2 5587
1 TraesCS2D01G416400 chr2D 531259393 531263257 3864 False 295.666667 431 88.996000 4020 5588 3 chr2D.!!$F3 1568
2 TraesCS2D01G416400 chr2A 675075651 675080309 4658 False 2583.333333 6373 95.270000 753 5588 3 chr2A.!!$F2 4835
3 TraesCS2D01G416400 chr2A 675745335 675747113 1778 False 397.000000 448 88.452500 4020 5588 2 chr2A.!!$F3 1568
4 TraesCS2D01G416400 chr2B 630130777 630136079 5302 False 2088.250000 5921 92.624250 338 5588 4 chr2B.!!$F2 5250
5 TraesCS2D01G416400 chr2B 631100458 631102056 1598 False 264.333333 398 87.026333 3993 5588 3 chr2B.!!$F3 1595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 493 0.037734 TACTCTCGGAGTGCACCTCA 59.962 55.000 14.63 0.00 43.30 3.86 F
775 779 0.255033 TAGACTCTGGAGCACGGCTA 59.745 55.000 0.00 0.00 39.88 3.93 F
1615 1670 0.042794 GTGCGCTTTGCTTTGCTTTG 60.043 50.000 9.73 0.00 46.63 2.77 F
1616 1671 1.083209 GCGCTTTGCTTTGCTTTGC 60.083 52.632 0.00 0.00 41.73 3.68 F
1618 1673 1.152989 CGCTTTGCTTTGCTTTGCCA 61.153 50.000 0.00 0.00 0.00 4.92 F
1620 1675 1.196127 GCTTTGCTTTGCTTTGCCATC 59.804 47.619 0.00 0.00 0.00 3.51 F
1624 1679 1.619332 TGCTTTGCTTTGCCATCATCA 59.381 42.857 0.00 0.00 0.00 3.07 F
2615 2674 2.037053 CGCCATGTGTGGGAAACAA 58.963 52.632 0.00 0.00 46.14 2.83 F
3551 3610 2.049888 AGATTGCTTCTAAGGCTGCC 57.950 50.000 11.65 11.65 30.96 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1451 1.304282 CAACCATGACCTCCCCAGG 59.696 63.158 0.00 0.00 46.87 4.45 R
2597 2656 0.318614 GTTGTTTCCCACACATGGCG 60.319 55.000 0.00 0.00 45.76 5.69 R
3196 3255 1.018910 GCCGCAACCGTAAACCATAT 58.981 50.000 0.00 0.00 0.00 1.78 R
3576 3635 1.880340 GATCCGACTGGCTTGCGAG 60.880 63.158 0.00 0.00 34.14 5.03 R
3737 3796 5.998363 AGTAACTTCACACATCTTCTTTCCC 59.002 40.000 0.00 0.00 0.00 3.97 R
3750 3809 3.804786 TCCACGACAAGTAACTTCACA 57.195 42.857 0.00 0.00 0.00 3.58 R
3762 3821 2.920724 TCCTCACAATTTCCACGACA 57.079 45.000 0.00 0.00 0.00 4.35 R
4107 4169 1.617357 ACGAAGGTTCTGTGAGGTACC 59.383 52.381 2.73 2.73 0.00 3.34 R
5172 7684 0.039074 CTCGTCAAGTTGACTCGGCT 60.039 55.000 28.53 0.00 44.85 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.154649 CAATGTACATAAAGAGGGGATGTTAC 57.845 38.462 9.21 0.00 35.48 2.50
26 27 7.691993 ATGTACATAAAGAGGGGATGTTACT 57.308 36.000 6.56 0.00 35.48 2.24
27 28 6.884832 TGTACATAAAGAGGGGATGTTACTG 58.115 40.000 0.00 0.00 35.48 2.74
28 29 5.373812 ACATAAAGAGGGGATGTTACTGG 57.626 43.478 0.00 0.00 29.46 4.00
29 30 4.788617 ACATAAAGAGGGGATGTTACTGGT 59.211 41.667 0.00 0.00 29.46 4.00
30 31 5.968167 ACATAAAGAGGGGATGTTACTGGTA 59.032 40.000 0.00 0.00 29.46 3.25
31 32 6.445786 ACATAAAGAGGGGATGTTACTGGTAA 59.554 38.462 0.00 0.00 29.46 2.85
32 33 4.838904 AAGAGGGGATGTTACTGGTAAC 57.161 45.455 14.51 14.51 44.16 2.50
33 34 2.764572 AGAGGGGATGTTACTGGTAACG 59.235 50.000 15.80 0.00 46.19 3.18
34 35 2.498885 GAGGGGATGTTACTGGTAACGT 59.501 50.000 15.49 15.49 46.19 3.99
39 40 3.671008 ATGTTACTGGTAACGTCAGCA 57.329 42.857 15.80 0.00 46.19 4.41
40 41 3.671008 TGTTACTGGTAACGTCAGCAT 57.329 42.857 15.80 0.00 46.19 3.79
41 42 3.997762 TGTTACTGGTAACGTCAGCATT 58.002 40.909 15.80 0.00 46.19 3.56
42 43 5.136816 TGTTACTGGTAACGTCAGCATTA 57.863 39.130 15.80 0.00 46.19 1.90
43 44 5.539979 TGTTACTGGTAACGTCAGCATTAA 58.460 37.500 15.80 0.00 46.19 1.40
44 45 5.990386 TGTTACTGGTAACGTCAGCATTAAA 59.010 36.000 15.80 0.00 46.19 1.52
45 46 6.146510 TGTTACTGGTAACGTCAGCATTAAAG 59.853 38.462 15.80 0.00 46.19 1.85
46 47 4.638304 ACTGGTAACGTCAGCATTAAAGT 58.362 39.130 2.84 0.00 42.51 2.66
47 48 4.689345 ACTGGTAACGTCAGCATTAAAGTC 59.311 41.667 2.84 0.00 42.51 3.01
48 49 4.633175 TGGTAACGTCAGCATTAAAGTCA 58.367 39.130 0.00 0.00 42.51 3.41
49 50 5.242434 TGGTAACGTCAGCATTAAAGTCAT 58.758 37.500 0.00 0.00 42.51 3.06
50 51 6.399743 TGGTAACGTCAGCATTAAAGTCATA 58.600 36.000 0.00 0.00 42.51 2.15
51 52 7.045416 TGGTAACGTCAGCATTAAAGTCATAT 58.955 34.615 0.00 0.00 42.51 1.78
52 53 8.198778 TGGTAACGTCAGCATTAAAGTCATATA 58.801 33.333 0.00 0.00 42.51 0.86
53 54 9.037737 GGTAACGTCAGCATTAAAGTCATATAA 57.962 33.333 0.00 0.00 0.00 0.98
56 57 9.935682 AACGTCAGCATTAAAGTCATATAAATG 57.064 29.630 0.00 0.00 0.00 2.32
57 58 9.325198 ACGTCAGCATTAAAGTCATATAAATGA 57.675 29.630 0.00 0.00 39.87 2.57
76 77 9.698309 ATAAATGATCATTAAGACTACGGAGTG 57.302 33.333 21.00 0.00 45.73 3.51
77 78 6.961360 ATGATCATTAAGACTACGGAGTGA 57.039 37.500 4.10 0.00 45.73 3.41
78 79 6.769134 TGATCATTAAGACTACGGAGTGAA 57.231 37.500 4.10 0.00 45.73 3.18
79 80 6.561614 TGATCATTAAGACTACGGAGTGAAC 58.438 40.000 4.10 0.00 45.73 3.18
80 81 4.978186 TCATTAAGACTACGGAGTGAACG 58.022 43.478 4.10 0.00 45.73 3.95
81 82 2.907910 TAAGACTACGGAGTGAACGC 57.092 50.000 4.10 0.00 45.73 4.84
82 83 0.243095 AAGACTACGGAGTGAACGCC 59.757 55.000 4.10 0.00 45.73 5.68
83 84 0.608582 AGACTACGGAGTGAACGCCT 60.609 55.000 4.10 0.00 45.73 5.52
84 85 0.456312 GACTACGGAGTGAACGCCTG 60.456 60.000 4.10 0.00 45.73 4.85
85 86 0.892358 ACTACGGAGTGAACGCCTGA 60.892 55.000 0.00 0.00 45.73 3.86
86 87 0.456312 CTACGGAGTGAACGCCTGAC 60.456 60.000 1.67 0.00 45.73 3.51
87 88 1.870055 TACGGAGTGAACGCCTGACC 61.870 60.000 1.67 0.00 45.73 4.02
88 89 2.432628 GGAGTGAACGCCTGACCG 60.433 66.667 0.00 0.00 32.72 4.79
89 90 2.338984 GAGTGAACGCCTGACCGT 59.661 61.111 0.00 0.00 44.41 4.83
103 104 2.754472 TGACCGTTGTCATTCAGAGTG 58.246 47.619 0.00 0.00 46.40 3.51
104 105 2.364002 TGACCGTTGTCATTCAGAGTGA 59.636 45.455 0.00 0.00 46.40 3.41
105 106 2.731976 GACCGTTGTCATTCAGAGTGAC 59.268 50.000 17.19 17.19 44.77 3.67
106 107 2.069273 CCGTTGTCATTCAGAGTGACC 58.931 52.381 20.26 7.66 44.10 4.02
107 108 2.289072 CCGTTGTCATTCAGAGTGACCT 60.289 50.000 20.26 0.00 44.10 3.85
108 109 3.393800 CGTTGTCATTCAGAGTGACCTT 58.606 45.455 20.26 0.00 44.10 3.50
109 110 4.556233 CGTTGTCATTCAGAGTGACCTTA 58.444 43.478 20.26 6.18 44.10 2.69
110 111 4.623167 CGTTGTCATTCAGAGTGACCTTAG 59.377 45.833 20.26 8.09 44.10 2.18
111 112 5.564848 CGTTGTCATTCAGAGTGACCTTAGA 60.565 44.000 20.26 1.94 44.10 2.10
112 113 6.402222 GTTGTCATTCAGAGTGACCTTAGAT 58.598 40.000 20.26 0.00 44.10 1.98
113 114 6.214191 TGTCATTCAGAGTGACCTTAGATC 57.786 41.667 20.26 0.00 44.10 2.75
114 115 5.954752 TGTCATTCAGAGTGACCTTAGATCT 59.045 40.000 20.26 0.00 44.10 2.75
115 116 6.438741 TGTCATTCAGAGTGACCTTAGATCTT 59.561 38.462 20.26 0.00 44.10 2.40
116 117 6.978080 GTCATTCAGAGTGACCTTAGATCTTC 59.022 42.308 13.87 0.00 39.99 2.87
117 118 6.894654 TCATTCAGAGTGACCTTAGATCTTCT 59.105 38.462 0.00 0.00 0.00 2.85
118 119 8.055790 TCATTCAGAGTGACCTTAGATCTTCTA 58.944 37.037 0.00 0.00 0.00 2.10
119 120 8.859090 CATTCAGAGTGACCTTAGATCTTCTAT 58.141 37.037 0.00 0.00 0.00 1.98
120 121 7.815840 TCAGAGTGACCTTAGATCTTCTATG 57.184 40.000 0.00 0.00 0.00 2.23
121 122 6.264292 TCAGAGTGACCTTAGATCTTCTATGC 59.736 42.308 0.00 0.00 0.00 3.14
122 123 6.265196 CAGAGTGACCTTAGATCTTCTATGCT 59.735 42.308 0.00 0.00 0.00 3.79
123 124 6.490040 AGAGTGACCTTAGATCTTCTATGCTC 59.510 42.308 0.00 1.94 0.00 4.26
124 125 5.538433 AGTGACCTTAGATCTTCTATGCTCC 59.462 44.000 0.00 0.00 0.00 4.70
125 126 4.520874 TGACCTTAGATCTTCTATGCTCCG 59.479 45.833 0.00 0.00 0.00 4.63
126 127 4.730966 ACCTTAGATCTTCTATGCTCCGA 58.269 43.478 0.00 0.00 0.00 4.55
127 128 4.764823 ACCTTAGATCTTCTATGCTCCGAG 59.235 45.833 0.00 0.00 0.00 4.63
128 129 4.764823 CCTTAGATCTTCTATGCTCCGAGT 59.235 45.833 0.00 0.00 0.00 4.18
129 130 5.335583 CCTTAGATCTTCTATGCTCCGAGTG 60.336 48.000 0.00 0.00 0.00 3.51
130 131 2.890311 AGATCTTCTATGCTCCGAGTGG 59.110 50.000 0.00 0.00 0.00 4.00
131 132 2.145397 TCTTCTATGCTCCGAGTGGT 57.855 50.000 0.00 0.00 36.30 4.16
132 133 2.457598 TCTTCTATGCTCCGAGTGGTT 58.542 47.619 0.00 0.00 36.30 3.67
133 134 2.832129 TCTTCTATGCTCCGAGTGGTTT 59.168 45.455 0.00 0.00 36.30 3.27
134 135 2.961526 TCTATGCTCCGAGTGGTTTC 57.038 50.000 0.00 0.00 36.30 2.78
135 136 2.457598 TCTATGCTCCGAGTGGTTTCT 58.542 47.619 0.00 0.00 36.30 2.52
136 137 2.166459 TCTATGCTCCGAGTGGTTTCTG 59.834 50.000 0.00 0.00 36.30 3.02
137 138 0.976641 ATGCTCCGAGTGGTTTCTGA 59.023 50.000 0.00 0.00 36.30 3.27
138 139 0.976641 TGCTCCGAGTGGTTTCTGAT 59.023 50.000 0.00 0.00 36.30 2.90
139 140 2.176045 TGCTCCGAGTGGTTTCTGATA 58.824 47.619 0.00 0.00 36.30 2.15
140 141 2.766263 TGCTCCGAGTGGTTTCTGATAT 59.234 45.455 0.00 0.00 36.30 1.63
141 142 3.126831 GCTCCGAGTGGTTTCTGATATG 58.873 50.000 0.00 0.00 36.30 1.78
142 143 3.722147 CTCCGAGTGGTTTCTGATATGG 58.278 50.000 0.00 0.00 36.30 2.74
143 144 3.104512 TCCGAGTGGTTTCTGATATGGT 58.895 45.455 0.00 0.00 36.30 3.55
144 145 3.132289 TCCGAGTGGTTTCTGATATGGTC 59.868 47.826 0.00 0.00 36.30 4.02
145 146 3.116300 CGAGTGGTTTCTGATATGGTCG 58.884 50.000 0.00 0.00 0.00 4.79
146 147 3.181490 CGAGTGGTTTCTGATATGGTCGA 60.181 47.826 0.00 0.00 0.00 4.20
147 148 4.363999 GAGTGGTTTCTGATATGGTCGAG 58.636 47.826 0.00 0.00 0.00 4.04
148 149 3.769844 AGTGGTTTCTGATATGGTCGAGT 59.230 43.478 0.00 0.00 0.00 4.18
149 150 3.865745 GTGGTTTCTGATATGGTCGAGTG 59.134 47.826 0.00 0.00 0.00 3.51
150 151 3.767131 TGGTTTCTGATATGGTCGAGTGA 59.233 43.478 0.00 0.00 0.00 3.41
151 152 4.142160 TGGTTTCTGATATGGTCGAGTGAG 60.142 45.833 0.00 0.00 0.00 3.51
152 153 4.142138 GGTTTCTGATATGGTCGAGTGAGT 60.142 45.833 0.00 0.00 0.00 3.41
153 154 5.067413 GGTTTCTGATATGGTCGAGTGAGTA 59.933 44.000 0.00 0.00 0.00 2.59
154 155 6.239064 GGTTTCTGATATGGTCGAGTGAGTAT 60.239 42.308 0.00 0.00 0.00 2.12
155 156 7.040617 GGTTTCTGATATGGTCGAGTGAGTATA 60.041 40.741 0.00 0.00 0.00 1.47
156 157 7.436430 TTCTGATATGGTCGAGTGAGTATAC 57.564 40.000 0.00 0.00 0.00 1.47
157 158 5.938710 TCTGATATGGTCGAGTGAGTATACC 59.061 44.000 0.00 0.00 0.00 2.73
158 159 5.008331 TGATATGGTCGAGTGAGTATACCC 58.992 45.833 0.00 0.00 0.00 3.69
159 160 3.596940 ATGGTCGAGTGAGTATACCCT 57.403 47.619 0.00 0.00 0.00 4.34
160 161 2.651455 TGGTCGAGTGAGTATACCCTG 58.349 52.381 0.00 0.00 0.00 4.45
161 162 1.955080 GGTCGAGTGAGTATACCCTGG 59.045 57.143 0.00 0.00 0.00 4.45
162 163 2.652590 GTCGAGTGAGTATACCCTGGT 58.347 52.381 0.00 0.00 0.00 4.00
163 164 2.617774 GTCGAGTGAGTATACCCTGGTC 59.382 54.545 0.00 0.00 0.00 4.02
164 165 1.602851 CGAGTGAGTATACCCTGGTCG 59.397 57.143 0.00 0.00 0.00 4.79
165 166 2.744166 CGAGTGAGTATACCCTGGTCGA 60.744 54.545 0.00 0.00 0.00 4.20
166 167 3.285484 GAGTGAGTATACCCTGGTCGAA 58.715 50.000 0.00 0.00 0.00 3.71
167 168 3.890147 GAGTGAGTATACCCTGGTCGAAT 59.110 47.826 0.00 0.00 0.00 3.34
168 169 3.637229 AGTGAGTATACCCTGGTCGAATG 59.363 47.826 0.00 0.00 0.00 2.67
169 170 2.963101 TGAGTATACCCTGGTCGAATGG 59.037 50.000 0.00 0.00 0.00 3.16
170 171 3.228453 GAGTATACCCTGGTCGAATGGA 58.772 50.000 0.00 0.00 0.00 3.41
171 172 3.640029 GAGTATACCCTGGTCGAATGGAA 59.360 47.826 0.00 0.00 0.00 3.53
172 173 4.232091 AGTATACCCTGGTCGAATGGAAT 58.768 43.478 0.00 0.00 0.00 3.01
173 174 4.658901 AGTATACCCTGGTCGAATGGAATT 59.341 41.667 0.00 0.00 40.93 2.17
174 175 2.128771 ACCCTGGTCGAATGGAATTG 57.871 50.000 0.00 0.00 36.07 2.32
175 176 1.340991 ACCCTGGTCGAATGGAATTGG 60.341 52.381 0.00 0.00 36.07 3.16
176 177 1.392589 CCTGGTCGAATGGAATTGGG 58.607 55.000 0.00 0.00 36.07 4.12
177 178 1.340991 CCTGGTCGAATGGAATTGGGT 60.341 52.381 0.00 0.00 36.07 4.51
178 179 2.446435 CTGGTCGAATGGAATTGGGTT 58.554 47.619 0.00 0.00 36.07 4.11
179 180 3.616219 CTGGTCGAATGGAATTGGGTTA 58.384 45.455 0.00 0.00 36.07 2.85
180 181 4.207165 CTGGTCGAATGGAATTGGGTTAT 58.793 43.478 0.00 0.00 36.07 1.89
181 182 4.204012 TGGTCGAATGGAATTGGGTTATC 58.796 43.478 0.00 0.00 36.07 1.75
182 183 3.568430 GGTCGAATGGAATTGGGTTATCC 59.432 47.826 0.00 0.00 36.07 2.59
183 184 3.250040 GTCGAATGGAATTGGGTTATCCG 59.750 47.826 0.00 0.00 36.07 4.18
184 185 3.134985 TCGAATGGAATTGGGTTATCCGA 59.865 43.478 0.00 0.00 36.07 4.55
185 186 3.498397 CGAATGGAATTGGGTTATCCGAG 59.502 47.826 0.00 0.00 36.07 4.63
186 187 4.461198 GAATGGAATTGGGTTATCCGAGT 58.539 43.478 0.00 0.00 36.07 4.18
187 188 3.275617 TGGAATTGGGTTATCCGAGTG 57.724 47.619 0.00 0.00 38.76 3.51
188 189 2.092646 TGGAATTGGGTTATCCGAGTGG 60.093 50.000 0.00 0.00 38.76 4.00
189 190 7.111251 AATGGAATTGGGTTATCCGAGTGGA 62.111 44.000 0.00 0.00 42.14 4.02
190 191 8.509602 AATGGAATTGGGTTATCCGAGTGGAA 62.510 42.308 0.00 0.00 41.48 3.53
204 205 1.772182 GTGGAACTCACAGTCGAGTG 58.228 55.000 18.72 18.72 45.56 3.51
205 206 0.673985 TGGAACTCACAGTCGAGTGG 59.326 55.000 23.61 12.80 45.56 4.00
206 207 0.038159 GGAACTCACAGTCGAGTGGG 60.038 60.000 23.61 20.42 45.56 4.61
209 210 3.201342 CTCACAGTCGAGTGGGTTG 57.799 57.895 21.57 12.07 39.93 3.77
210 211 0.389391 CTCACAGTCGAGTGGGTTGT 59.611 55.000 21.57 0.00 39.93 3.32
211 212 1.611977 CTCACAGTCGAGTGGGTTGTA 59.388 52.381 21.57 1.90 39.93 2.41
212 213 2.231478 CTCACAGTCGAGTGGGTTGTAT 59.769 50.000 21.57 0.00 39.93 2.29
213 214 2.230508 TCACAGTCGAGTGGGTTGTATC 59.769 50.000 21.57 0.00 39.93 2.24
214 215 1.549170 ACAGTCGAGTGGGTTGTATCC 59.451 52.381 23.61 0.00 0.00 2.59
215 216 1.825474 CAGTCGAGTGGGTTGTATCCT 59.175 52.381 12.66 0.00 0.00 3.24
216 217 3.021695 CAGTCGAGTGGGTTGTATCCTA 58.978 50.000 12.66 0.00 0.00 2.94
217 218 3.022406 AGTCGAGTGGGTTGTATCCTAC 58.978 50.000 0.00 0.00 38.90 3.18
218 219 2.019249 TCGAGTGGGTTGTATCCTACG 58.981 52.381 0.00 0.00 42.53 3.51
219 220 2.019249 CGAGTGGGTTGTATCCTACGA 58.981 52.381 0.00 0.00 42.53 3.43
220 221 2.621998 CGAGTGGGTTGTATCCTACGAT 59.378 50.000 0.00 0.00 42.53 3.73
221 222 3.550233 CGAGTGGGTTGTATCCTACGATG 60.550 52.174 0.00 0.00 42.53 3.84
222 223 3.635373 GAGTGGGTTGTATCCTACGATGA 59.365 47.826 0.00 0.00 42.53 2.92
223 224 4.223953 AGTGGGTTGTATCCTACGATGAT 58.776 43.478 0.00 0.00 42.53 2.45
224 225 4.654262 AGTGGGTTGTATCCTACGATGATT 59.346 41.667 0.00 0.00 42.53 2.57
225 226 5.130477 AGTGGGTTGTATCCTACGATGATTT 59.870 40.000 0.00 0.00 42.53 2.17
226 227 5.465724 GTGGGTTGTATCCTACGATGATTTC 59.534 44.000 0.00 0.00 0.00 2.17
227 228 5.129650 TGGGTTGTATCCTACGATGATTTCA 59.870 40.000 0.00 0.00 0.00 2.69
228 229 5.696724 GGGTTGTATCCTACGATGATTTCAG 59.303 44.000 0.00 0.00 0.00 3.02
229 230 6.281405 GGTTGTATCCTACGATGATTTCAGT 58.719 40.000 0.00 0.00 0.00 3.41
230 231 6.421202 GGTTGTATCCTACGATGATTTCAGTC 59.579 42.308 0.00 0.00 0.00 3.51
231 232 5.758924 TGTATCCTACGATGATTTCAGTCG 58.241 41.667 0.00 9.37 40.91 4.18
232 233 3.710326 TCCTACGATGATTTCAGTCGG 57.290 47.619 13.18 2.50 39.53 4.79
233 234 3.021695 TCCTACGATGATTTCAGTCGGT 58.978 45.455 13.18 1.40 39.53 4.69
234 235 4.201657 TCCTACGATGATTTCAGTCGGTA 58.798 43.478 13.18 2.22 39.53 4.02
235 236 4.275196 TCCTACGATGATTTCAGTCGGTAG 59.725 45.833 13.18 8.84 39.53 3.18
236 237 4.275196 CCTACGATGATTTCAGTCGGTAGA 59.725 45.833 13.18 0.00 39.53 2.59
237 238 4.713824 ACGATGATTTCAGTCGGTAGAA 57.286 40.909 13.18 0.00 39.53 2.10
238 239 5.263968 ACGATGATTTCAGTCGGTAGAAT 57.736 39.130 13.18 0.00 39.53 2.40
239 240 5.661458 ACGATGATTTCAGTCGGTAGAATT 58.339 37.500 13.18 0.00 39.53 2.17
240 241 6.106673 ACGATGATTTCAGTCGGTAGAATTT 58.893 36.000 13.18 0.00 39.53 1.82
241 242 6.036083 ACGATGATTTCAGTCGGTAGAATTTG 59.964 38.462 13.18 0.00 39.53 2.32
242 243 6.036083 CGATGATTTCAGTCGGTAGAATTTGT 59.964 38.462 0.00 0.00 0.00 2.83
243 244 7.413000 CGATGATTTCAGTCGGTAGAATTTGTT 60.413 37.037 0.00 0.00 0.00 2.83
244 245 6.898041 TGATTTCAGTCGGTAGAATTTGTTG 58.102 36.000 0.00 0.00 0.00 3.33
245 246 6.485313 TGATTTCAGTCGGTAGAATTTGTTGT 59.515 34.615 0.00 0.00 0.00 3.32
246 247 5.917541 TTCAGTCGGTAGAATTTGTTGTC 57.082 39.130 0.00 0.00 0.00 3.18
247 248 4.312443 TCAGTCGGTAGAATTTGTTGTCC 58.688 43.478 0.00 0.00 0.00 4.02
248 249 4.039973 TCAGTCGGTAGAATTTGTTGTCCT 59.960 41.667 0.00 0.00 0.00 3.85
249 250 4.755123 CAGTCGGTAGAATTTGTTGTCCTT 59.245 41.667 0.00 0.00 0.00 3.36
250 251 5.238650 CAGTCGGTAGAATTTGTTGTCCTTT 59.761 40.000 0.00 0.00 0.00 3.11
251 252 5.238650 AGTCGGTAGAATTTGTTGTCCTTTG 59.761 40.000 0.00 0.00 0.00 2.77
252 253 5.237779 GTCGGTAGAATTTGTTGTCCTTTGA 59.762 40.000 0.00 0.00 0.00 2.69
253 254 5.823570 TCGGTAGAATTTGTTGTCCTTTGAA 59.176 36.000 0.00 0.00 0.00 2.69
254 255 6.488683 TCGGTAGAATTTGTTGTCCTTTGAAT 59.511 34.615 0.00 0.00 0.00 2.57
255 256 6.582295 CGGTAGAATTTGTTGTCCTTTGAATG 59.418 38.462 0.00 0.00 0.00 2.67
256 257 7.433680 GGTAGAATTTGTTGTCCTTTGAATGT 58.566 34.615 0.00 0.00 0.00 2.71
257 258 7.595130 GGTAGAATTTGTTGTCCTTTGAATGTC 59.405 37.037 0.00 0.00 0.00 3.06
258 259 6.515832 AGAATTTGTTGTCCTTTGAATGTCC 58.484 36.000 0.00 0.00 0.00 4.02
259 260 6.324770 AGAATTTGTTGTCCTTTGAATGTCCT 59.675 34.615 0.00 0.00 0.00 3.85
260 261 5.930837 TTTGTTGTCCTTTGAATGTCCTT 57.069 34.783 0.00 0.00 0.00 3.36
261 262 4.916983 TGTTGTCCTTTGAATGTCCTTG 57.083 40.909 0.00 0.00 0.00 3.61
262 263 4.531854 TGTTGTCCTTTGAATGTCCTTGA 58.468 39.130 0.00 0.00 0.00 3.02
263 264 4.338118 TGTTGTCCTTTGAATGTCCTTGAC 59.662 41.667 0.00 0.00 0.00 3.18
264 265 4.437682 TGTCCTTTGAATGTCCTTGACT 57.562 40.909 0.00 0.00 33.15 3.41
265 266 4.136796 TGTCCTTTGAATGTCCTTGACTG 58.863 43.478 0.00 0.00 33.15 3.51
266 267 4.137543 GTCCTTTGAATGTCCTTGACTGT 58.862 43.478 0.00 0.00 33.15 3.55
267 268 5.163248 TGTCCTTTGAATGTCCTTGACTGTA 60.163 40.000 0.00 0.00 33.15 2.74
268 269 5.763204 GTCCTTTGAATGTCCTTGACTGTAA 59.237 40.000 0.00 0.00 33.15 2.41
269 270 5.997746 TCCTTTGAATGTCCTTGACTGTAAG 59.002 40.000 0.00 0.00 42.29 2.34
270 271 5.997746 CCTTTGAATGTCCTTGACTGTAAGA 59.002 40.000 0.00 0.00 37.43 2.10
271 272 6.073003 CCTTTGAATGTCCTTGACTGTAAGAC 60.073 42.308 0.00 0.00 37.43 3.01
272 273 5.545063 TGAATGTCCTTGACTGTAAGACA 57.455 39.130 0.00 0.00 36.70 3.41
273 274 5.924356 TGAATGTCCTTGACTGTAAGACAA 58.076 37.500 0.00 0.00 45.76 3.18
274 275 6.533730 TGAATGTCCTTGACTGTAAGACAAT 58.466 36.000 0.00 0.00 46.61 2.71
275 276 6.427853 TGAATGTCCTTGACTGTAAGACAATG 59.572 38.462 0.00 0.00 46.61 2.82
276 277 5.290493 TGTCCTTGACTGTAAGACAATGT 57.710 39.130 0.00 0.00 46.61 2.71
277 278 5.297547 TGTCCTTGACTGTAAGACAATGTC 58.702 41.667 5.02 5.02 46.61 3.06
278 279 4.691216 GTCCTTGACTGTAAGACAATGTCC 59.309 45.833 10.12 0.00 46.61 4.02
279 280 4.593206 TCCTTGACTGTAAGACAATGTCCT 59.407 41.667 10.12 0.00 46.61 3.85
280 281 5.071788 TCCTTGACTGTAAGACAATGTCCTT 59.928 40.000 10.12 6.55 46.61 3.36
281 282 5.180117 CCTTGACTGTAAGACAATGTCCTTG 59.820 44.000 10.12 0.00 46.61 3.61
282 283 4.641396 TGACTGTAAGACAATGTCCTTGG 58.359 43.478 10.12 0.10 35.26 3.61
283 284 4.003648 GACTGTAAGACAATGTCCTTGGG 58.996 47.826 10.12 1.14 36.86 4.12
284 285 3.650942 ACTGTAAGACAATGTCCTTGGGA 59.349 43.478 10.12 0.00 36.86 4.37
285 286 4.104102 ACTGTAAGACAATGTCCTTGGGAA 59.896 41.667 10.12 0.00 36.86 3.97
286 287 4.651778 TGTAAGACAATGTCCTTGGGAAG 58.348 43.478 10.12 0.00 39.30 3.46
287 288 6.320038 CTGTAAGACAATGTCCTTGGGAAGG 61.320 48.000 10.12 0.00 43.96 3.46
295 296 3.577389 CCTTGGGAAGGGTGCTTAG 57.423 57.895 0.00 0.00 45.27 2.18
296 297 0.991920 CCTTGGGAAGGGTGCTTAGA 59.008 55.000 0.00 0.00 45.27 2.10
297 298 1.566231 CCTTGGGAAGGGTGCTTAGAT 59.434 52.381 0.00 0.00 45.27 1.98
298 299 2.422093 CCTTGGGAAGGGTGCTTAGATC 60.422 54.545 0.00 0.00 45.27 2.75
299 300 1.965414 TGGGAAGGGTGCTTAGATCA 58.035 50.000 0.00 0.00 0.00 2.92
300 301 1.839994 TGGGAAGGGTGCTTAGATCAG 59.160 52.381 0.00 0.00 0.00 2.90
301 302 1.141858 GGGAAGGGTGCTTAGATCAGG 59.858 57.143 0.00 0.00 0.00 3.86
302 303 1.840635 GGAAGGGTGCTTAGATCAGGT 59.159 52.381 0.00 0.00 0.00 4.00
303 304 3.039011 GGAAGGGTGCTTAGATCAGGTA 58.961 50.000 0.00 0.00 0.00 3.08
304 305 3.648545 GGAAGGGTGCTTAGATCAGGTAT 59.351 47.826 0.00 0.00 0.00 2.73
305 306 4.838986 GGAAGGGTGCTTAGATCAGGTATA 59.161 45.833 0.00 0.00 0.00 1.47
306 307 5.485708 GGAAGGGTGCTTAGATCAGGTATAT 59.514 44.000 0.00 0.00 0.00 0.86
307 308 6.013293 GGAAGGGTGCTTAGATCAGGTATATT 60.013 42.308 0.00 0.00 0.00 1.28
308 309 6.365970 AGGGTGCTTAGATCAGGTATATTG 57.634 41.667 0.00 0.00 0.00 1.90
309 310 4.938226 GGGTGCTTAGATCAGGTATATTGC 59.062 45.833 0.00 0.00 0.00 3.56
310 311 4.938226 GGTGCTTAGATCAGGTATATTGCC 59.062 45.833 0.00 0.00 0.00 4.52
311 312 4.938226 GTGCTTAGATCAGGTATATTGCCC 59.062 45.833 0.00 0.00 0.00 5.36
312 313 4.846367 TGCTTAGATCAGGTATATTGCCCT 59.154 41.667 0.00 0.00 0.00 5.19
313 314 6.022958 TGCTTAGATCAGGTATATTGCCCTA 58.977 40.000 0.00 0.00 0.00 3.53
314 315 6.070767 TGCTTAGATCAGGTATATTGCCCTAC 60.071 42.308 0.00 0.00 0.00 3.18
315 316 6.630638 GCTTAGATCAGGTATATTGCCCTACC 60.631 46.154 0.00 0.00 38.13 3.18
316 317 4.104831 AGATCAGGTATATTGCCCTACCC 58.895 47.826 0.00 0.00 38.54 3.69
317 318 3.648683 TCAGGTATATTGCCCTACCCT 57.351 47.619 0.00 0.00 38.54 4.34
318 319 4.770617 TCAGGTATATTGCCCTACCCTA 57.229 45.455 0.00 0.00 38.54 3.53
319 320 4.684724 TCAGGTATATTGCCCTACCCTAG 58.315 47.826 0.00 0.00 38.54 3.02
320 321 3.775316 CAGGTATATTGCCCTACCCTAGG 59.225 52.174 0.06 0.06 45.81 3.02
321 322 3.408586 AGGTATATTGCCCTACCCTAGGT 59.591 47.826 8.29 0.00 44.73 3.08
322 323 4.613846 AGGTATATTGCCCTACCCTAGGTA 59.386 45.833 8.29 0.00 44.73 3.08
323 324 4.713814 GGTATATTGCCCTACCCTAGGTAC 59.286 50.000 8.29 0.00 44.73 3.34
324 325 2.881266 ATTGCCCTACCCTAGGTACA 57.119 50.000 8.29 0.00 44.73 2.90
325 326 2.881266 TTGCCCTACCCTAGGTACAT 57.119 50.000 8.29 0.00 44.73 2.29
326 327 2.097110 TGCCCTACCCTAGGTACATG 57.903 55.000 8.29 0.00 44.73 3.21
327 328 1.292849 TGCCCTACCCTAGGTACATGT 59.707 52.381 8.29 2.69 44.73 3.21
328 329 1.969208 GCCCTACCCTAGGTACATGTC 59.031 57.143 8.29 0.00 44.73 3.06
329 330 2.691850 GCCCTACCCTAGGTACATGTCA 60.692 54.545 8.29 0.00 44.73 3.58
330 331 3.858135 CCCTACCCTAGGTACATGTCAT 58.142 50.000 8.29 0.00 44.73 3.06
331 332 3.833070 CCCTACCCTAGGTACATGTCATC 59.167 52.174 8.29 0.00 44.73 2.92
332 333 3.506455 CCTACCCTAGGTACATGTCATCG 59.494 52.174 8.29 0.00 41.18 3.84
333 334 3.028094 ACCCTAGGTACATGTCATCGT 57.972 47.619 8.29 0.00 32.11 3.73
334 335 2.957006 ACCCTAGGTACATGTCATCGTC 59.043 50.000 8.29 0.00 32.11 4.20
335 336 2.956333 CCCTAGGTACATGTCATCGTCA 59.044 50.000 8.29 0.00 0.00 4.35
336 337 3.383505 CCCTAGGTACATGTCATCGTCAA 59.616 47.826 8.29 0.00 0.00 3.18
337 338 4.039245 CCCTAGGTACATGTCATCGTCAAT 59.961 45.833 8.29 0.00 0.00 2.57
338 339 5.223382 CCTAGGTACATGTCATCGTCAATC 58.777 45.833 0.00 0.00 0.00 2.67
339 340 4.736126 AGGTACATGTCATCGTCAATCA 57.264 40.909 0.00 0.00 0.00 2.57
343 344 2.674852 ACATGTCATCGTCAATCAGTGC 59.325 45.455 0.00 0.00 0.00 4.40
351 352 1.028868 GTCAATCAGTGCTGGCCCTC 61.029 60.000 0.00 0.00 0.00 4.30
390 391 2.333417 TGAGTCCTCAGCGTCGTCC 61.333 63.158 0.00 0.00 34.14 4.79
465 466 1.802715 CCGAACGTTGTCGCGGTAT 60.803 57.895 15.78 0.00 39.74 2.73
492 493 0.037734 TACTCTCGGAGTGCACCTCA 59.962 55.000 14.63 0.00 43.30 3.86
581 582 6.071165 GGATTTTGATGGTTCCTCAAATGAGT 60.071 38.462 9.43 0.00 41.03 3.41
588 592 4.200092 GGTTCCTCAAATGAGTATGGACC 58.800 47.826 9.43 5.07 40.48 4.46
590 594 2.434336 TCCTCAAATGAGTATGGACCCG 59.566 50.000 9.43 0.00 40.48 5.28
649 653 2.953466 ATCGGATTCGGACGAAGAAA 57.047 45.000 12.88 0.00 42.88 2.52
680 684 1.263484 GATGAGCATGAGCATCCAACG 59.737 52.381 14.06 0.00 45.49 4.10
740 744 7.906199 TTAAGGGTTCAATCAAAGGAAGAAA 57.094 32.000 0.00 0.00 0.00 2.52
746 750 6.701841 GGTTCAATCAAAGGAAGAAAAGTTCC 59.298 38.462 0.00 0.00 45.76 3.62
755 759 4.891260 GGAAGAAAAGTTCCGAACTAGGA 58.109 43.478 14.19 0.00 41.91 2.94
756 760 5.489249 GGAAGAAAAGTTCCGAACTAGGAT 58.511 41.667 14.19 1.55 41.91 3.24
775 779 0.255033 TAGACTCTGGAGCACGGCTA 59.745 55.000 0.00 0.00 39.88 3.93
787 791 3.759618 GAGCACGGCTACTCTATAAGGAT 59.240 47.826 0.00 0.00 39.88 3.24
813 817 6.248433 ACTTTGATCATGTACCAACAATCCT 58.752 36.000 0.00 0.00 39.58 3.24
828 863 8.875168 ACCAACAATCCTTAATGAATGGTTTTA 58.125 29.630 1.60 0.00 37.15 1.52
856 891 4.611807 CGCTTTCGTATGCACAAAACCTTA 60.612 41.667 0.00 0.00 0.00 2.69
861 896 7.630470 TTCGTATGCACAAAACCTTATTTTG 57.370 32.000 9.91 9.91 43.09 2.44
881 917 2.747022 CATCCCACGTGTCCCACA 59.253 61.111 15.65 0.00 33.40 4.17
978 1014 0.589708 CCCAAGTCCGTCCGTTTTTC 59.410 55.000 0.00 0.00 0.00 2.29
1010 1048 2.512986 GATCCCACCATGGCCACCAA 62.513 60.000 8.16 0.00 36.95 3.67
1255 1293 4.765449 AGCATTCGCGGCTGCTGA 62.765 61.111 27.60 11.84 46.55 4.26
1386 1425 1.056660 AGGTGGGATTCTTGTGACGT 58.943 50.000 0.00 0.00 0.00 4.34
1390 1429 1.270625 TGGGATTCTTGTGACGTGGTC 60.271 52.381 0.00 0.00 0.00 4.02
1411 1450 3.313524 GTTTGGGGGCTGCTTGGG 61.314 66.667 0.00 0.00 0.00 4.12
1557 1596 2.502213 CGCAGGTATAATCCGTGACA 57.498 50.000 0.00 0.00 0.00 3.58
1589 1628 1.379044 ACATTGCAGGCAGGGTAGC 60.379 57.895 0.00 0.00 0.00 3.58
1612 1667 2.028043 GGTGCGCTTTGCTTTGCT 59.972 55.556 9.73 0.00 46.63 3.91
1613 1668 1.592400 GGTGCGCTTTGCTTTGCTT 60.592 52.632 9.73 0.00 46.63 3.91
1614 1669 1.153597 GGTGCGCTTTGCTTTGCTTT 61.154 50.000 9.73 0.00 46.63 3.51
1615 1670 0.042794 GTGCGCTTTGCTTTGCTTTG 60.043 50.000 9.73 0.00 46.63 2.77
1616 1671 1.083209 GCGCTTTGCTTTGCTTTGC 60.083 52.632 0.00 0.00 41.73 3.68
1617 1672 1.566077 CGCTTTGCTTTGCTTTGCC 59.434 52.632 0.00 0.00 0.00 4.52
1618 1673 1.152989 CGCTTTGCTTTGCTTTGCCA 61.153 50.000 0.00 0.00 0.00 4.92
1619 1674 1.232119 GCTTTGCTTTGCTTTGCCAT 58.768 45.000 0.00 0.00 0.00 4.40
1620 1675 1.196127 GCTTTGCTTTGCTTTGCCATC 59.804 47.619 0.00 0.00 0.00 3.51
1621 1676 2.485903 CTTTGCTTTGCTTTGCCATCA 58.514 42.857 0.00 0.00 0.00 3.07
1622 1677 2.843401 TTGCTTTGCTTTGCCATCAT 57.157 40.000 0.00 0.00 0.00 2.45
1623 1678 2.373540 TGCTTTGCTTTGCCATCATC 57.626 45.000 0.00 0.00 0.00 2.92
1624 1679 1.619332 TGCTTTGCTTTGCCATCATCA 59.381 42.857 0.00 0.00 0.00 3.07
1625 1680 2.037381 TGCTTTGCTTTGCCATCATCAA 59.963 40.909 0.00 0.00 0.00 2.57
1626 1681 3.068560 GCTTTGCTTTGCCATCATCAAA 58.931 40.909 0.00 0.00 33.04 2.69
1627 1682 3.687698 GCTTTGCTTTGCCATCATCAAAT 59.312 39.130 0.00 0.00 33.54 2.32
1628 1683 4.155280 GCTTTGCTTTGCCATCATCAAATT 59.845 37.500 0.00 0.00 33.54 1.82
1629 1684 5.614923 TTTGCTTTGCCATCATCAAATTG 57.385 34.783 0.00 0.00 33.54 2.32
1630 1685 3.004171 TGCTTTGCCATCATCAAATTGC 58.996 40.909 0.00 0.00 33.54 3.56
1631 1686 3.267483 GCTTTGCCATCATCAAATTGCT 58.733 40.909 0.00 0.00 33.54 3.91
1632 1687 3.687698 GCTTTGCCATCATCAAATTGCTT 59.312 39.130 0.00 0.00 33.54 3.91
1633 1688 4.155280 GCTTTGCCATCATCAAATTGCTTT 59.845 37.500 0.00 0.00 33.54 3.51
1634 1689 5.614923 TTTGCCATCATCAAATTGCTTTG 57.385 34.783 0.00 0.00 42.60 2.77
1635 1690 3.004171 TGCCATCATCAAATTGCTTTGC 58.996 40.909 0.00 0.00 41.29 3.68
2597 2656 3.687212 GGCTTCTTGAGACCTTTAAGAGC 59.313 47.826 0.00 0.00 32.59 4.09
2615 2674 2.037053 CGCCATGTGTGGGAAACAA 58.963 52.632 0.00 0.00 46.14 2.83
2978 3037 4.680708 CGAGCAGAAACCTTAGGCATAAGA 60.681 45.833 19.31 0.00 40.86 2.10
3196 3255 5.204292 AGAGTATGAAGAGTGCATGGACTA 58.796 41.667 20.79 4.82 0.00 2.59
3302 3361 3.444742 GGTTTGATTCATCAGATGGCACA 59.555 43.478 10.67 5.58 39.99 4.57
3551 3610 2.049888 AGATTGCTTCTAAGGCTGCC 57.950 50.000 11.65 11.65 30.96 4.85
3576 3635 5.015733 CGAACGTAGAGACATTTTCAATGC 58.984 41.667 0.00 0.00 0.00 3.56
3737 3796 3.443037 CAGTGAGGCTCAGAAATCTACG 58.557 50.000 19.38 0.00 0.00 3.51
3750 3809 6.070767 TCAGAAATCTACGGGAAAGAAGATGT 60.071 38.462 0.00 0.00 0.00 3.06
3762 3821 6.486993 GGGAAAGAAGATGTGTGAAGTTACTT 59.513 38.462 0.00 0.00 0.00 2.24
3777 3836 5.418310 AGTTACTTGTCGTGGAAATTGTG 57.582 39.130 0.00 0.00 0.00 3.33
4037 4096 3.804036 TCCTAGTATTTTCATGTGGCCG 58.196 45.455 0.00 0.00 0.00 6.13
4107 4169 1.110442 TGGCCACAACTTTGGTCTTG 58.890 50.000 0.00 0.00 42.29 3.02
4130 4192 1.971357 ACCTCACAGAACCTTCGTGAT 59.029 47.619 10.85 0.05 38.76 3.06
4531 4731 1.342975 TGGAGACGAATCCCCAGATCA 60.343 52.381 7.96 0.00 38.72 2.92
4592 4792 5.440610 GGTGTGGGATTTTCTCTGATGTAT 58.559 41.667 0.00 0.00 0.00 2.29
4603 4803 8.853077 TTTTCTCTGATGTATGACTTCACATT 57.147 30.769 0.00 0.00 35.55 2.71
4632 4840 6.547141 TGTGTATACCACTACGGCTATTACTT 59.453 38.462 0.00 0.00 44.81 2.24
4783 7180 3.412386 GTTCAGTGTAATGCCCTGAGTT 58.588 45.455 0.00 0.00 36.64 3.01
4784 7181 4.575885 GTTCAGTGTAATGCCCTGAGTTA 58.424 43.478 0.00 0.00 36.64 2.24
5022 7530 3.771479 ACAGTGATCAGCAGTATCTCCAA 59.229 43.478 0.00 0.00 0.00 3.53
5141 7653 2.504367 ACACAGCAAAGCCGTAAGAAT 58.496 42.857 0.00 0.00 43.02 2.40
5161 7673 0.043053 CAATTCGGCGAGCATGTACG 60.043 55.000 10.46 8.77 0.00 3.67
5162 7674 0.179121 AATTCGGCGAGCATGTACGA 60.179 50.000 10.46 6.56 0.00 3.43
5164 7676 1.074319 TTCGGCGAGCATGTACGAAC 61.074 55.000 10.46 7.81 38.46 3.95
5168 7680 0.366871 GCGAGCATGTACGAACACAG 59.633 55.000 15.37 0.00 38.78 3.66
5169 7681 0.366871 CGAGCATGTACGAACACAGC 59.633 55.000 7.66 0.00 38.78 4.40
5170 7682 1.428448 GAGCATGTACGAACACAGCA 58.572 50.000 0.00 0.00 40.59 4.41
5171 7683 1.798223 GAGCATGTACGAACACAGCAA 59.202 47.619 0.00 0.00 40.59 3.91
5172 7684 2.217750 AGCATGTACGAACACAGCAAA 58.782 42.857 0.00 0.00 40.59 3.68
5173 7685 2.224079 AGCATGTACGAACACAGCAAAG 59.776 45.455 0.00 0.00 40.59 2.77
5174 7686 2.574322 CATGTACGAACACAGCAAAGC 58.426 47.619 0.00 0.00 38.78 3.51
5175 7687 0.941542 TGTACGAACACAGCAAAGCC 59.058 50.000 0.00 0.00 0.00 4.35
5176 7688 0.110823 GTACGAACACAGCAAAGCCG 60.111 55.000 0.00 0.00 0.00 5.52
5177 7689 0.249531 TACGAACACAGCAAAGCCGA 60.250 50.000 0.00 0.00 0.00 5.54
5178 7690 1.205064 CGAACACAGCAAAGCCGAG 59.795 57.895 0.00 0.00 0.00 4.63
5179 7691 1.498865 CGAACACAGCAAAGCCGAGT 61.499 55.000 0.00 0.00 0.00 4.18
5180 7692 0.235926 GAACACAGCAAAGCCGAGTC 59.764 55.000 0.00 0.00 0.00 3.36
5181 7693 0.463654 AACACAGCAAAGCCGAGTCA 60.464 50.000 0.00 0.00 0.00 3.41
5182 7694 0.463654 ACACAGCAAAGCCGAGTCAA 60.464 50.000 0.00 0.00 0.00 3.18
5183 7695 0.040958 CACAGCAAAGCCGAGTCAAC 60.041 55.000 0.00 0.00 0.00 3.18
5184 7696 0.179045 ACAGCAAAGCCGAGTCAACT 60.179 50.000 0.00 0.00 0.00 3.16
5185 7697 0.947244 CAGCAAAGCCGAGTCAACTT 59.053 50.000 0.00 0.00 0.00 2.66
5186 7698 0.947244 AGCAAAGCCGAGTCAACTTG 59.053 50.000 0.00 0.00 0.00 3.16
5187 7699 0.944386 GCAAAGCCGAGTCAACTTGA 59.056 50.000 0.00 0.00 0.00 3.02
5198 7710 3.706994 GTCAACTTGACGAGCATGTAC 57.293 47.619 6.16 0.00 37.67 2.90
5199 7711 3.057019 GTCAACTTGACGAGCATGTACA 58.943 45.455 6.16 0.00 37.67 2.90
5200 7712 3.057019 TCAACTTGACGAGCATGTACAC 58.943 45.455 0.00 0.00 34.14 2.90
5201 7713 2.799978 CAACTTGACGAGCATGTACACA 59.200 45.455 0.00 0.00 34.14 3.72
5202 7714 3.106242 ACTTGACGAGCATGTACACAA 57.894 42.857 0.00 0.00 33.55 3.33
5203 7715 2.800544 ACTTGACGAGCATGTACACAAC 59.199 45.455 0.00 0.00 33.55 3.32
5204 7716 2.517650 TGACGAGCATGTACACAACA 57.482 45.000 0.00 0.00 43.86 3.33
5365 7988 2.182030 GAACTCGACGGCCTGGAG 59.818 66.667 0.00 7.11 0.00 3.86
5447 8106 2.268298 GTGATGTCGGCGTACTTGATT 58.732 47.619 6.85 0.00 0.00 2.57
5527 8186 3.059982 CTTCTGCAGGTCCACGGA 58.940 61.111 15.13 0.00 0.00 4.69
5530 8189 2.047844 CTGCAGGTCCACGGACTG 60.048 66.667 15.62 12.28 44.04 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.993183 AGTAACATCCCCTCTTTATGTACATTG 59.007 37.037 14.77 4.54 33.59 2.82
2 3 7.420214 CCAGTAACATCCCCTCTTTATGTACAT 60.420 40.741 13.93 13.93 33.59 2.29
3 4 6.126883 CCAGTAACATCCCCTCTTTATGTACA 60.127 42.308 0.00 0.00 33.59 2.90
4 5 6.126854 ACCAGTAACATCCCCTCTTTATGTAC 60.127 42.308 0.00 0.00 33.59 2.90
7 8 5.373812 ACCAGTAACATCCCCTCTTTATG 57.626 43.478 0.00 0.00 0.00 1.90
8 9 6.407752 CGTTACCAGTAACATCCCCTCTTTAT 60.408 42.308 18.14 0.00 44.12 1.40
9 10 5.105228 CGTTACCAGTAACATCCCCTCTTTA 60.105 44.000 18.14 0.00 44.12 1.85
10 11 4.323257 CGTTACCAGTAACATCCCCTCTTT 60.323 45.833 18.14 0.00 44.12 2.52
11 12 3.197116 CGTTACCAGTAACATCCCCTCTT 59.803 47.826 18.14 0.00 44.12 2.85
12 13 2.764572 CGTTACCAGTAACATCCCCTCT 59.235 50.000 18.14 0.00 44.12 3.69
14 15 2.498885 GACGTTACCAGTAACATCCCCT 59.501 50.000 18.14 0.00 44.12 4.79
15 16 2.234414 TGACGTTACCAGTAACATCCCC 59.766 50.000 18.14 5.21 44.12 4.81
16 17 3.518590 CTGACGTTACCAGTAACATCCC 58.481 50.000 18.14 6.59 44.12 3.85
17 18 2.928116 GCTGACGTTACCAGTAACATCC 59.072 50.000 18.14 8.53 44.12 3.51
18 19 3.581755 TGCTGACGTTACCAGTAACATC 58.418 45.455 18.14 13.84 44.12 3.06
19 20 3.671008 TGCTGACGTTACCAGTAACAT 57.329 42.857 18.14 5.33 44.12 2.71
20 21 3.671008 ATGCTGACGTTACCAGTAACA 57.329 42.857 18.14 1.19 44.12 2.41
21 22 6.146673 ACTTTAATGCTGACGTTACCAGTAAC 59.853 38.462 10.09 10.09 41.37 2.50
22 23 6.225318 ACTTTAATGCTGACGTTACCAGTAA 58.775 36.000 4.84 0.00 34.29 2.24
23 24 5.786311 ACTTTAATGCTGACGTTACCAGTA 58.214 37.500 4.84 0.79 34.29 2.74
24 25 4.638304 ACTTTAATGCTGACGTTACCAGT 58.362 39.130 4.84 0.00 34.29 4.00
25 26 4.688879 TGACTTTAATGCTGACGTTACCAG 59.311 41.667 0.00 0.00 34.88 4.00
26 27 4.633175 TGACTTTAATGCTGACGTTACCA 58.367 39.130 0.00 0.00 0.00 3.25
27 28 5.796350 ATGACTTTAATGCTGACGTTACC 57.204 39.130 0.00 0.00 0.00 2.85
30 31 9.935682 CATTTATATGACTTTAATGCTGACGTT 57.064 29.630 0.00 0.00 33.37 3.99
31 32 9.325198 TCATTTATATGACTTTAATGCTGACGT 57.675 29.630 0.00 0.00 35.87 4.34
50 51 9.698309 CACTCCGTAGTCTTAATGATCATTTAT 57.302 33.333 25.26 4.91 31.97 1.40
51 52 8.909923 TCACTCCGTAGTCTTAATGATCATTTA 58.090 33.333 25.26 15.84 31.97 1.40
52 53 7.782049 TCACTCCGTAGTCTTAATGATCATTT 58.218 34.615 25.26 10.22 31.97 2.32
53 54 7.348080 TCACTCCGTAGTCTTAATGATCATT 57.652 36.000 23.75 23.75 31.97 2.57
54 55 6.961360 TCACTCCGTAGTCTTAATGATCAT 57.039 37.500 1.18 1.18 31.97 2.45
55 56 6.561614 GTTCACTCCGTAGTCTTAATGATCA 58.438 40.000 0.00 0.00 31.97 2.92
56 57 5.681982 CGTTCACTCCGTAGTCTTAATGATC 59.318 44.000 0.00 0.00 31.97 2.92
57 58 5.579718 CGTTCACTCCGTAGTCTTAATGAT 58.420 41.667 0.00 0.00 31.97 2.45
58 59 4.673580 GCGTTCACTCCGTAGTCTTAATGA 60.674 45.833 0.00 0.00 31.97 2.57
59 60 3.546670 GCGTTCACTCCGTAGTCTTAATG 59.453 47.826 0.00 0.00 31.97 1.90
60 61 3.428589 GGCGTTCACTCCGTAGTCTTAAT 60.429 47.826 0.00 0.00 31.97 1.40
61 62 2.095059 GGCGTTCACTCCGTAGTCTTAA 60.095 50.000 0.00 0.00 31.97 1.85
62 63 1.470098 GGCGTTCACTCCGTAGTCTTA 59.530 52.381 0.00 0.00 31.97 2.10
63 64 0.243095 GGCGTTCACTCCGTAGTCTT 59.757 55.000 0.00 0.00 31.97 3.01
64 65 0.608582 AGGCGTTCACTCCGTAGTCT 60.609 55.000 0.00 0.00 31.97 3.24
65 66 0.456312 CAGGCGTTCACTCCGTAGTC 60.456 60.000 0.00 0.00 31.97 2.59
66 67 0.892358 TCAGGCGTTCACTCCGTAGT 60.892 55.000 0.00 0.00 35.91 2.73
67 68 0.456312 GTCAGGCGTTCACTCCGTAG 60.456 60.000 0.00 0.00 0.00 3.51
68 69 1.582968 GTCAGGCGTTCACTCCGTA 59.417 57.895 0.00 0.00 0.00 4.02
69 70 2.338984 GTCAGGCGTTCACTCCGT 59.661 61.111 0.00 0.00 0.00 4.69
70 71 2.432628 GGTCAGGCGTTCACTCCG 60.433 66.667 0.00 0.00 0.00 4.63
71 72 2.432628 CGGTCAGGCGTTCACTCC 60.433 66.667 0.00 0.00 0.00 3.85
72 73 1.300697 AACGGTCAGGCGTTCACTC 60.301 57.895 0.00 0.00 0.00 3.51
73 74 1.594293 CAACGGTCAGGCGTTCACT 60.594 57.895 0.00 0.00 0.00 3.41
74 75 1.828331 GACAACGGTCAGGCGTTCAC 61.828 60.000 0.00 0.00 43.73 3.18
75 76 1.593209 GACAACGGTCAGGCGTTCA 60.593 57.895 0.00 0.00 43.73 3.18
76 77 3.241177 GACAACGGTCAGGCGTTC 58.759 61.111 0.00 0.00 43.73 3.95
84 85 2.731976 GTCACTCTGAATGACAACGGTC 59.268 50.000 13.82 0.00 44.87 4.79
85 86 2.548067 GGTCACTCTGAATGACAACGGT 60.548 50.000 19.41 0.00 46.89 4.83
86 87 2.069273 GGTCACTCTGAATGACAACGG 58.931 52.381 19.41 0.00 46.89 4.44
87 88 3.032017 AGGTCACTCTGAATGACAACG 57.968 47.619 19.41 0.00 46.89 4.10
88 89 5.784177 TCTAAGGTCACTCTGAATGACAAC 58.216 41.667 19.41 4.75 46.89 3.32
89 90 6.438741 AGATCTAAGGTCACTCTGAATGACAA 59.561 38.462 19.41 5.11 46.89 3.18
90 91 5.954752 AGATCTAAGGTCACTCTGAATGACA 59.045 40.000 19.41 0.59 46.89 3.58
91 92 6.463995 AGATCTAAGGTCACTCTGAATGAC 57.536 41.667 10.59 10.59 44.80 3.06
92 93 6.894654 AGAAGATCTAAGGTCACTCTGAATGA 59.105 38.462 0.00 0.00 0.00 2.57
93 94 7.111247 AGAAGATCTAAGGTCACTCTGAATG 57.889 40.000 0.00 0.00 0.00 2.67
94 95 8.859090 CATAGAAGATCTAAGGTCACTCTGAAT 58.141 37.037 0.00 0.00 31.96 2.57
95 96 7.201866 GCATAGAAGATCTAAGGTCACTCTGAA 60.202 40.741 0.00 0.00 31.96 3.02
96 97 6.264292 GCATAGAAGATCTAAGGTCACTCTGA 59.736 42.308 0.00 0.00 31.96 3.27
97 98 6.265196 AGCATAGAAGATCTAAGGTCACTCTG 59.735 42.308 0.00 0.00 31.96 3.35
98 99 6.372931 AGCATAGAAGATCTAAGGTCACTCT 58.627 40.000 0.00 0.00 31.96 3.24
99 100 6.294508 GGAGCATAGAAGATCTAAGGTCACTC 60.295 46.154 17.98 0.00 43.14 3.51
100 101 5.538433 GGAGCATAGAAGATCTAAGGTCACT 59.462 44.000 17.98 0.00 43.14 3.41
101 102 5.563867 CGGAGCATAGAAGATCTAAGGTCAC 60.564 48.000 17.98 10.06 43.14 3.67
102 103 4.520874 CGGAGCATAGAAGATCTAAGGTCA 59.479 45.833 17.98 0.00 43.14 4.02
103 104 4.762765 TCGGAGCATAGAAGATCTAAGGTC 59.237 45.833 11.36 11.36 41.63 3.85
104 105 4.730966 TCGGAGCATAGAAGATCTAAGGT 58.269 43.478 0.00 0.00 32.03 3.50
105 106 4.764823 ACTCGGAGCATAGAAGATCTAAGG 59.235 45.833 4.58 0.00 31.96 2.69
106 107 5.335583 CCACTCGGAGCATAGAAGATCTAAG 60.336 48.000 4.58 0.00 31.96 2.18
107 108 4.520874 CCACTCGGAGCATAGAAGATCTAA 59.479 45.833 4.58 0.00 31.96 2.10
108 109 4.075682 CCACTCGGAGCATAGAAGATCTA 58.924 47.826 4.58 0.00 32.87 1.98
109 110 2.890311 CCACTCGGAGCATAGAAGATCT 59.110 50.000 4.58 0.00 0.00 2.75
110 111 2.625790 ACCACTCGGAGCATAGAAGATC 59.374 50.000 4.58 0.00 35.59 2.75
111 112 2.672098 ACCACTCGGAGCATAGAAGAT 58.328 47.619 4.58 0.00 35.59 2.40
112 113 2.145397 ACCACTCGGAGCATAGAAGA 57.855 50.000 4.58 0.00 35.59 2.87
113 114 2.969628 AACCACTCGGAGCATAGAAG 57.030 50.000 4.58 0.00 35.59 2.85
114 115 2.832129 AGAAACCACTCGGAGCATAGAA 59.168 45.455 4.58 0.00 35.59 2.10
115 116 2.166459 CAGAAACCACTCGGAGCATAGA 59.834 50.000 4.58 0.00 35.59 1.98
116 117 2.166459 TCAGAAACCACTCGGAGCATAG 59.834 50.000 4.58 0.00 35.59 2.23
117 118 2.176045 TCAGAAACCACTCGGAGCATA 58.824 47.619 4.58 0.00 35.59 3.14
118 119 0.976641 TCAGAAACCACTCGGAGCAT 59.023 50.000 4.58 0.00 35.59 3.79
119 120 0.976641 ATCAGAAACCACTCGGAGCA 59.023 50.000 4.58 0.00 35.59 4.26
120 121 2.961526 TATCAGAAACCACTCGGAGC 57.038 50.000 4.58 0.00 35.59 4.70
121 122 3.133003 ACCATATCAGAAACCACTCGGAG 59.867 47.826 2.83 2.83 35.59 4.63
122 123 3.104512 ACCATATCAGAAACCACTCGGA 58.895 45.455 0.00 0.00 35.59 4.55
123 124 3.458189 GACCATATCAGAAACCACTCGG 58.542 50.000 0.00 0.00 38.77 4.63
124 125 3.116300 CGACCATATCAGAAACCACTCG 58.884 50.000 0.00 0.00 0.00 4.18
125 126 4.142138 ACTCGACCATATCAGAAACCACTC 60.142 45.833 0.00 0.00 0.00 3.51
126 127 3.769844 ACTCGACCATATCAGAAACCACT 59.230 43.478 0.00 0.00 0.00 4.00
127 128 3.865745 CACTCGACCATATCAGAAACCAC 59.134 47.826 0.00 0.00 0.00 4.16
128 129 3.767131 TCACTCGACCATATCAGAAACCA 59.233 43.478 0.00 0.00 0.00 3.67
129 130 4.142138 ACTCACTCGACCATATCAGAAACC 60.142 45.833 0.00 0.00 0.00 3.27
130 131 5.000012 ACTCACTCGACCATATCAGAAAC 58.000 43.478 0.00 0.00 0.00 2.78
131 132 6.961360 ATACTCACTCGACCATATCAGAAA 57.039 37.500 0.00 0.00 0.00 2.52
132 133 6.430308 GGTATACTCACTCGACCATATCAGAA 59.570 42.308 2.25 0.00 0.00 3.02
133 134 5.938710 GGTATACTCACTCGACCATATCAGA 59.061 44.000 2.25 0.00 0.00 3.27
134 135 5.124138 GGGTATACTCACTCGACCATATCAG 59.876 48.000 2.25 0.00 31.41 2.90
135 136 5.008331 GGGTATACTCACTCGACCATATCA 58.992 45.833 2.25 0.00 31.41 2.15
136 137 5.124138 CAGGGTATACTCACTCGACCATATC 59.876 48.000 5.34 0.00 31.41 1.63
137 138 5.010933 CAGGGTATACTCACTCGACCATAT 58.989 45.833 5.34 0.00 31.41 1.78
138 139 4.395625 CAGGGTATACTCACTCGACCATA 58.604 47.826 5.34 0.00 31.41 2.74
139 140 3.223435 CAGGGTATACTCACTCGACCAT 58.777 50.000 5.34 0.00 31.41 3.55
140 141 2.651455 CAGGGTATACTCACTCGACCA 58.349 52.381 5.34 0.00 31.41 4.02
141 142 1.955080 CCAGGGTATACTCACTCGACC 59.045 57.143 5.34 0.00 0.00 4.79
142 143 2.617774 GACCAGGGTATACTCACTCGAC 59.382 54.545 5.34 0.00 0.00 4.20
143 144 2.744166 CGACCAGGGTATACTCACTCGA 60.744 54.545 5.34 0.00 0.00 4.04
144 145 1.602851 CGACCAGGGTATACTCACTCG 59.397 57.143 5.34 4.10 0.00 4.18
145 146 2.928334 TCGACCAGGGTATACTCACTC 58.072 52.381 5.34 0.00 0.00 3.51
146 147 3.377253 TTCGACCAGGGTATACTCACT 57.623 47.619 5.34 0.00 0.00 3.41
147 148 3.243771 CCATTCGACCAGGGTATACTCAC 60.244 52.174 5.34 0.00 0.00 3.51
148 149 2.963101 CCATTCGACCAGGGTATACTCA 59.037 50.000 5.34 0.00 0.00 3.41
149 150 3.228453 TCCATTCGACCAGGGTATACTC 58.772 50.000 2.25 0.00 0.00 2.59
150 151 3.323774 TCCATTCGACCAGGGTATACT 57.676 47.619 2.25 0.00 0.00 2.12
151 152 4.618920 ATTCCATTCGACCAGGGTATAC 57.381 45.455 0.00 0.00 0.00 1.47
152 153 4.202419 CCAATTCCATTCGACCAGGGTATA 60.202 45.833 0.00 0.00 0.00 1.47
153 154 3.435026 CCAATTCCATTCGACCAGGGTAT 60.435 47.826 0.00 0.00 0.00 2.73
154 155 2.092646 CCAATTCCATTCGACCAGGGTA 60.093 50.000 0.00 0.00 0.00 3.69
155 156 1.340991 CCAATTCCATTCGACCAGGGT 60.341 52.381 0.00 0.00 0.00 4.34
156 157 1.392589 CCAATTCCATTCGACCAGGG 58.607 55.000 0.00 0.00 0.00 4.45
157 158 1.340991 ACCCAATTCCATTCGACCAGG 60.341 52.381 0.00 0.00 0.00 4.45
158 159 2.128771 ACCCAATTCCATTCGACCAG 57.871 50.000 0.00 0.00 0.00 4.00
159 160 2.595750 AACCCAATTCCATTCGACCA 57.404 45.000 0.00 0.00 0.00 4.02
160 161 3.568430 GGATAACCCAATTCCATTCGACC 59.432 47.826 0.00 0.00 34.14 4.79
161 162 3.250040 CGGATAACCCAATTCCATTCGAC 59.750 47.826 0.00 0.00 34.14 4.20
162 163 3.134985 TCGGATAACCCAATTCCATTCGA 59.865 43.478 0.00 0.00 34.14 3.71
163 164 3.472652 TCGGATAACCCAATTCCATTCG 58.527 45.455 0.00 0.00 34.14 3.34
164 165 4.275936 CACTCGGATAACCCAATTCCATTC 59.724 45.833 0.00 0.00 34.14 2.67
165 166 4.207165 CACTCGGATAACCCAATTCCATT 58.793 43.478 0.00 0.00 34.14 3.16
166 167 3.435026 CCACTCGGATAACCCAATTCCAT 60.435 47.826 0.00 0.00 34.14 3.41
167 168 2.092646 CCACTCGGATAACCCAATTCCA 60.093 50.000 0.00 0.00 34.14 3.53
168 169 2.171870 TCCACTCGGATAACCCAATTCC 59.828 50.000 0.00 0.00 35.91 3.01
169 170 3.553828 TCCACTCGGATAACCCAATTC 57.446 47.619 0.00 0.00 35.91 2.17
170 171 3.265995 AGTTCCACTCGGATAACCCAATT 59.734 43.478 0.00 0.00 42.41 2.32
171 172 2.844348 AGTTCCACTCGGATAACCCAAT 59.156 45.455 0.00 0.00 42.41 3.16
172 173 2.235402 GAGTTCCACTCGGATAACCCAA 59.765 50.000 0.00 0.00 42.41 4.12
173 174 1.829222 GAGTTCCACTCGGATAACCCA 59.171 52.381 0.00 0.00 42.41 4.51
174 175 2.598686 GAGTTCCACTCGGATAACCC 57.401 55.000 0.00 0.00 42.41 4.11
183 184 1.609555 ACTCGACTGTGAGTTCCACTC 59.390 52.381 6.96 0.00 46.85 3.51
184 185 1.338337 CACTCGACTGTGAGTTCCACT 59.662 52.381 9.26 0.00 46.85 4.00
185 186 1.603172 CCACTCGACTGTGAGTTCCAC 60.603 57.143 6.39 0.00 46.85 4.02
186 187 0.673985 CCACTCGACTGTGAGTTCCA 59.326 55.000 6.39 0.00 46.85 3.53
187 188 0.038159 CCCACTCGACTGTGAGTTCC 60.038 60.000 6.39 0.00 46.85 3.62
188 189 0.674534 ACCCACTCGACTGTGAGTTC 59.325 55.000 6.39 0.00 46.85 3.01
189 190 1.120530 AACCCACTCGACTGTGAGTT 58.879 50.000 6.39 2.95 46.85 3.01
191 192 0.389391 ACAACCCACTCGACTGTGAG 59.611 55.000 6.39 0.00 40.12 3.51
192 193 1.694844 TACAACCCACTCGACTGTGA 58.305 50.000 6.39 0.00 40.12 3.58
193 194 2.607187 GATACAACCCACTCGACTGTG 58.393 52.381 0.00 0.00 37.66 3.66
194 195 1.549170 GGATACAACCCACTCGACTGT 59.451 52.381 0.00 0.00 0.00 3.55
195 196 1.825474 AGGATACAACCCACTCGACTG 59.175 52.381 0.00 0.00 41.41 3.51
196 197 2.233305 AGGATACAACCCACTCGACT 57.767 50.000 0.00 0.00 41.41 4.18
197 198 2.223433 CGTAGGATACAACCCACTCGAC 60.223 54.545 0.00 0.00 43.24 4.20
198 199 2.019249 CGTAGGATACAACCCACTCGA 58.981 52.381 0.00 0.00 43.24 4.04
199 200 2.019249 TCGTAGGATACAACCCACTCG 58.981 52.381 0.00 0.00 43.24 4.18
200 201 3.635373 TCATCGTAGGATACAACCCACTC 59.365 47.826 0.00 0.00 43.24 3.51
201 202 3.638860 TCATCGTAGGATACAACCCACT 58.361 45.455 0.00 0.00 43.24 4.00
202 203 4.602340 ATCATCGTAGGATACAACCCAC 57.398 45.455 0.00 0.00 43.24 4.61
203 204 5.129650 TGAAATCATCGTAGGATACAACCCA 59.870 40.000 0.00 0.00 43.24 4.51
204 205 5.607477 TGAAATCATCGTAGGATACAACCC 58.393 41.667 0.00 0.00 43.24 4.11
205 206 6.281405 ACTGAAATCATCGTAGGATACAACC 58.719 40.000 0.00 0.00 43.24 3.77
206 207 6.142480 CGACTGAAATCATCGTAGGATACAAC 59.858 42.308 0.00 0.00 43.24 3.32
207 208 6.206498 CGACTGAAATCATCGTAGGATACAA 58.794 40.000 0.00 0.00 43.24 2.41
208 209 5.278315 CCGACTGAAATCATCGTAGGATACA 60.278 44.000 0.00 0.00 43.24 2.29
209 210 5.154932 CCGACTGAAATCATCGTAGGATAC 58.845 45.833 0.00 0.00 38.50 2.24
210 211 4.825634 ACCGACTGAAATCATCGTAGGATA 59.174 41.667 8.32 0.00 34.24 2.59
211 212 3.637229 ACCGACTGAAATCATCGTAGGAT 59.363 43.478 8.32 0.00 34.24 3.24
212 213 3.021695 ACCGACTGAAATCATCGTAGGA 58.978 45.455 8.32 0.00 34.24 2.94
213 214 3.438297 ACCGACTGAAATCATCGTAGG 57.562 47.619 11.47 7.18 35.30 3.18
214 215 5.419760 TCTACCGACTGAAATCATCGTAG 57.580 43.478 11.47 11.83 34.02 3.51
215 216 5.823209 TTCTACCGACTGAAATCATCGTA 57.177 39.130 11.47 6.23 34.02 3.43
216 217 4.713824 TTCTACCGACTGAAATCATCGT 57.286 40.909 11.47 0.00 34.02 3.73
217 218 6.036083 ACAAATTCTACCGACTGAAATCATCG 59.964 38.462 7.71 7.71 35.62 3.84
218 219 7.308782 ACAAATTCTACCGACTGAAATCATC 57.691 36.000 0.00 0.00 0.00 2.92
219 220 7.174946 ACAACAAATTCTACCGACTGAAATCAT 59.825 33.333 0.00 0.00 0.00 2.45
220 221 6.485313 ACAACAAATTCTACCGACTGAAATCA 59.515 34.615 0.00 0.00 0.00 2.57
221 222 6.899114 ACAACAAATTCTACCGACTGAAATC 58.101 36.000 0.00 0.00 0.00 2.17
222 223 6.072673 GGACAACAAATTCTACCGACTGAAAT 60.073 38.462 0.00 0.00 0.00 2.17
223 224 5.237779 GGACAACAAATTCTACCGACTGAAA 59.762 40.000 0.00 0.00 0.00 2.69
224 225 4.753107 GGACAACAAATTCTACCGACTGAA 59.247 41.667 0.00 0.00 0.00 3.02
225 226 4.039973 AGGACAACAAATTCTACCGACTGA 59.960 41.667 0.00 0.00 0.00 3.41
226 227 4.315803 AGGACAACAAATTCTACCGACTG 58.684 43.478 0.00 0.00 0.00 3.51
227 228 4.618920 AGGACAACAAATTCTACCGACT 57.381 40.909 0.00 0.00 0.00 4.18
228 229 5.237779 TCAAAGGACAACAAATTCTACCGAC 59.762 40.000 0.00 0.00 0.00 4.79
229 230 5.369833 TCAAAGGACAACAAATTCTACCGA 58.630 37.500 0.00 0.00 0.00 4.69
230 231 5.682943 TCAAAGGACAACAAATTCTACCG 57.317 39.130 0.00 0.00 0.00 4.02
231 232 7.433680 ACATTCAAAGGACAACAAATTCTACC 58.566 34.615 0.00 0.00 0.00 3.18
232 233 7.595130 GGACATTCAAAGGACAACAAATTCTAC 59.405 37.037 0.00 0.00 0.00 2.59
233 234 7.505585 AGGACATTCAAAGGACAACAAATTCTA 59.494 33.333 0.00 0.00 0.00 2.10
234 235 6.324770 AGGACATTCAAAGGACAACAAATTCT 59.675 34.615 0.00 0.00 0.00 2.40
235 236 6.515832 AGGACATTCAAAGGACAACAAATTC 58.484 36.000 0.00 0.00 0.00 2.17
236 237 6.484364 AGGACATTCAAAGGACAACAAATT 57.516 33.333 0.00 0.00 0.00 1.82
237 238 6.098124 TCAAGGACATTCAAAGGACAACAAAT 59.902 34.615 0.00 0.00 0.00 2.32
238 239 5.420421 TCAAGGACATTCAAAGGACAACAAA 59.580 36.000 0.00 0.00 0.00 2.83
239 240 4.952957 TCAAGGACATTCAAAGGACAACAA 59.047 37.500 0.00 0.00 0.00 2.83
240 241 4.338118 GTCAAGGACATTCAAAGGACAACA 59.662 41.667 0.00 0.00 32.09 3.33
241 242 4.580580 AGTCAAGGACATTCAAAGGACAAC 59.419 41.667 0.00 0.00 34.60 3.32
242 243 4.580167 CAGTCAAGGACATTCAAAGGACAA 59.420 41.667 0.00 0.00 34.60 3.18
243 244 4.136796 CAGTCAAGGACATTCAAAGGACA 58.863 43.478 0.00 0.00 34.60 4.02
244 245 4.137543 ACAGTCAAGGACATTCAAAGGAC 58.862 43.478 0.00 0.00 34.60 3.85
245 246 4.437682 ACAGTCAAGGACATTCAAAGGA 57.562 40.909 0.00 0.00 34.60 3.36
246 247 5.997746 TCTTACAGTCAAGGACATTCAAAGG 59.002 40.000 0.00 0.00 34.60 3.11
247 248 6.483307 TGTCTTACAGTCAAGGACATTCAAAG 59.517 38.462 0.00 0.00 34.60 2.77
248 249 6.353323 TGTCTTACAGTCAAGGACATTCAAA 58.647 36.000 0.00 0.00 34.60 2.69
249 250 5.924356 TGTCTTACAGTCAAGGACATTCAA 58.076 37.500 0.00 0.00 34.60 2.69
250 251 5.545063 TGTCTTACAGTCAAGGACATTCA 57.455 39.130 0.00 0.00 34.60 2.57
251 252 6.428159 ACATTGTCTTACAGTCAAGGACATTC 59.572 38.462 3.09 0.00 34.60 2.67
252 253 6.299141 ACATTGTCTTACAGTCAAGGACATT 58.701 36.000 3.09 0.00 34.60 2.71
253 254 5.869579 ACATTGTCTTACAGTCAAGGACAT 58.130 37.500 3.09 0.00 34.60 3.06
254 255 5.290493 ACATTGTCTTACAGTCAAGGACA 57.710 39.130 3.09 0.00 34.60 4.02
255 256 4.691216 GGACATTGTCTTACAGTCAAGGAC 59.309 45.833 16.02 0.00 31.51 3.85
256 257 4.593206 AGGACATTGTCTTACAGTCAAGGA 59.407 41.667 16.02 0.00 31.51 3.36
257 258 4.899502 AGGACATTGTCTTACAGTCAAGG 58.100 43.478 16.02 0.00 32.84 3.61
258 259 5.180117 CCAAGGACATTGTCTTACAGTCAAG 59.820 44.000 16.02 0.00 37.17 3.02
259 260 5.063204 CCAAGGACATTGTCTTACAGTCAA 58.937 41.667 16.02 0.00 37.17 3.18
260 261 4.504864 CCCAAGGACATTGTCTTACAGTCA 60.505 45.833 16.02 0.00 37.17 3.41
261 262 4.003648 CCCAAGGACATTGTCTTACAGTC 58.996 47.826 16.02 0.00 37.17 3.51
262 263 3.650942 TCCCAAGGACATTGTCTTACAGT 59.349 43.478 16.02 0.00 37.17 3.55
263 264 4.286297 TCCCAAGGACATTGTCTTACAG 57.714 45.455 16.02 3.45 37.17 2.74
264 265 4.651778 CTTCCCAAGGACATTGTCTTACA 58.348 43.478 16.02 0.00 37.17 2.41
278 279 2.239654 TGATCTAAGCACCCTTCCCAAG 59.760 50.000 0.00 0.00 32.47 3.61
279 280 2.239654 CTGATCTAAGCACCCTTCCCAA 59.760 50.000 0.00 0.00 32.47 4.12
280 281 1.839994 CTGATCTAAGCACCCTTCCCA 59.160 52.381 0.00 0.00 32.47 4.37
281 282 1.141858 CCTGATCTAAGCACCCTTCCC 59.858 57.143 0.00 0.00 32.47 3.97
282 283 1.840635 ACCTGATCTAAGCACCCTTCC 59.159 52.381 0.00 0.00 32.47 3.46
283 284 4.965200 ATACCTGATCTAAGCACCCTTC 57.035 45.455 0.00 0.00 32.47 3.46
284 285 6.745474 GCAATATACCTGATCTAAGCACCCTT 60.745 42.308 0.00 0.00 35.05 3.95
285 286 5.280215 GCAATATACCTGATCTAAGCACCCT 60.280 44.000 0.00 0.00 0.00 4.34
286 287 4.938226 GCAATATACCTGATCTAAGCACCC 59.062 45.833 0.00 0.00 0.00 4.61
287 288 4.938226 GGCAATATACCTGATCTAAGCACC 59.062 45.833 0.00 0.00 0.00 5.01
288 289 4.938226 GGGCAATATACCTGATCTAAGCAC 59.062 45.833 0.00 0.00 0.00 4.40
289 290 4.846367 AGGGCAATATACCTGATCTAAGCA 59.154 41.667 0.00 0.00 35.30 3.91
290 291 5.428184 AGGGCAATATACCTGATCTAAGC 57.572 43.478 0.00 0.00 35.30 3.09
291 292 6.127026 GGGTAGGGCAATATACCTGATCTAAG 60.127 46.154 0.00 0.00 41.10 2.18
292 293 5.724854 GGGTAGGGCAATATACCTGATCTAA 59.275 44.000 0.00 0.00 41.10 2.10
293 294 5.017431 AGGGTAGGGCAATATACCTGATCTA 59.983 44.000 0.00 0.00 41.10 1.98
294 295 4.104831 GGGTAGGGCAATATACCTGATCT 58.895 47.826 0.00 0.00 41.10 2.75
295 296 4.104831 AGGGTAGGGCAATATACCTGATC 58.895 47.826 0.00 0.00 41.10 2.92
296 297 4.161981 AGGGTAGGGCAATATACCTGAT 57.838 45.455 0.00 0.00 41.10 2.90
297 298 3.648683 AGGGTAGGGCAATATACCTGA 57.351 47.619 0.00 0.00 41.10 3.86
298 299 3.775316 CCTAGGGTAGGGCAATATACCTG 59.225 52.174 0.00 0.00 42.42 4.00
299 300 4.076175 CCTAGGGTAGGGCAATATACCT 57.924 50.000 0.00 0.00 42.42 3.08
311 312 4.142790 ACGATGACATGTACCTAGGGTAG 58.857 47.826 14.81 0.52 39.02 3.18
312 313 4.139786 GACGATGACATGTACCTAGGGTA 58.860 47.826 14.81 0.12 37.09 3.69
313 314 2.957006 GACGATGACATGTACCTAGGGT 59.043 50.000 14.81 0.00 40.16 4.34
314 315 2.956333 TGACGATGACATGTACCTAGGG 59.044 50.000 14.81 0.00 0.00 3.53
315 316 4.649088 TTGACGATGACATGTACCTAGG 57.351 45.455 7.41 7.41 0.00 3.02
316 317 5.831997 TGATTGACGATGACATGTACCTAG 58.168 41.667 0.00 0.00 0.00 3.02
317 318 5.359860 ACTGATTGACGATGACATGTACCTA 59.640 40.000 0.00 0.00 0.00 3.08
318 319 4.160439 ACTGATTGACGATGACATGTACCT 59.840 41.667 0.00 0.00 0.00 3.08
319 320 4.268644 CACTGATTGACGATGACATGTACC 59.731 45.833 0.00 0.00 0.00 3.34
320 321 4.259970 GCACTGATTGACGATGACATGTAC 60.260 45.833 0.00 0.00 0.00 2.90
321 322 3.865164 GCACTGATTGACGATGACATGTA 59.135 43.478 0.00 0.00 0.00 2.29
322 323 2.674852 GCACTGATTGACGATGACATGT 59.325 45.455 0.00 0.00 0.00 3.21
323 324 2.934553 AGCACTGATTGACGATGACATG 59.065 45.455 0.00 0.00 0.00 3.21
324 325 2.934553 CAGCACTGATTGACGATGACAT 59.065 45.455 0.00 0.00 0.00 3.06
325 326 2.340337 CAGCACTGATTGACGATGACA 58.660 47.619 0.00 0.00 0.00 3.58
326 327 1.662629 CCAGCACTGATTGACGATGAC 59.337 52.381 0.00 0.00 0.00 3.06
327 328 2.008543 GCCAGCACTGATTGACGATGA 61.009 52.381 0.00 0.00 0.00 2.92
328 329 0.376152 GCCAGCACTGATTGACGATG 59.624 55.000 0.00 0.00 0.00 3.84
329 330 0.745845 GGCCAGCACTGATTGACGAT 60.746 55.000 0.00 0.00 0.00 3.73
330 331 1.375908 GGCCAGCACTGATTGACGA 60.376 57.895 0.00 0.00 0.00 4.20
331 332 2.401766 GGGCCAGCACTGATTGACG 61.402 63.158 4.39 0.00 0.00 4.35
332 333 1.001641 AGGGCCAGCACTGATTGAC 60.002 57.895 6.18 0.00 0.00 3.18
333 334 1.300963 GAGGGCCAGCACTGATTGA 59.699 57.895 6.18 0.00 0.00 2.57
334 335 1.751927 GGAGGGCCAGCACTGATTG 60.752 63.158 6.18 0.00 0.00 2.67
335 336 2.679716 GGAGGGCCAGCACTGATT 59.320 61.111 6.18 0.00 0.00 2.57
336 337 3.415087 GGGAGGGCCAGCACTGAT 61.415 66.667 6.18 0.00 35.15 2.90
339 340 4.024984 TAGGGGAGGGCCAGCACT 62.025 66.667 6.18 0.00 35.15 4.40
343 344 2.846754 GAGCTAGGGGAGGGCCAG 60.847 72.222 6.18 0.00 35.15 4.85
359 360 1.595993 GGACTCAGTACAGCTGCGGA 61.596 60.000 15.27 3.73 44.66 5.54
562 563 5.191522 TCCATACTCATTTGAGGAACCATCA 59.808 40.000 11.99 0.00 46.13 3.07
581 582 2.842462 ATGCTCCGCGGGTCCATA 60.842 61.111 27.83 2.94 0.00 2.74
588 592 0.320683 TAATCCATCATGCTCCGCGG 60.321 55.000 22.12 22.12 0.00 6.46
590 594 3.503363 TGAATTAATCCATCATGCTCCGC 59.497 43.478 0.00 0.00 0.00 5.54
649 653 2.631545 TCATGCTCATCATCATCTCCGT 59.368 45.455 0.00 0.00 31.79 4.69
680 684 0.679960 CACCTCCCGGTTCATTTCCC 60.680 60.000 0.00 0.00 42.13 3.97
690 694 0.676782 GGATGTGTTTCACCTCCCGG 60.677 60.000 11.33 0.00 41.26 5.73
692 696 3.713826 TTAGGATGTGTTTCACCTCCC 57.286 47.619 16.42 7.17 45.82 4.30
694 698 6.635030 AAAGTTTAGGATGTGTTTCACCTC 57.365 37.500 0.00 0.00 32.73 3.85
700 704 7.562088 TGAACCCTTAAAGTTTAGGATGTGTTT 59.438 33.333 6.33 0.00 33.13 2.83
708 712 8.088365 CCTTTGATTGAACCCTTAAAGTTTAGG 58.912 37.037 0.00 0.00 0.00 2.69
740 744 5.591067 CAGAGTCTATCCTAGTTCGGAACTT 59.409 44.000 26.71 12.59 42.81 2.66
746 750 3.500680 GCTCCAGAGTCTATCCTAGTTCG 59.499 52.174 0.00 0.00 0.00 3.95
747 751 4.277423 GTGCTCCAGAGTCTATCCTAGTTC 59.723 50.000 0.00 0.00 0.00 3.01
748 752 4.211920 GTGCTCCAGAGTCTATCCTAGTT 58.788 47.826 0.00 0.00 0.00 2.24
750 754 2.811431 CGTGCTCCAGAGTCTATCCTAG 59.189 54.545 0.00 0.00 0.00 3.02
751 755 2.487445 CCGTGCTCCAGAGTCTATCCTA 60.487 54.545 0.00 0.00 0.00 2.94
752 756 1.686355 CGTGCTCCAGAGTCTATCCT 58.314 55.000 0.00 0.00 0.00 3.24
753 757 0.671251 CCGTGCTCCAGAGTCTATCC 59.329 60.000 0.00 0.00 0.00 2.59
754 758 0.031449 GCCGTGCTCCAGAGTCTATC 59.969 60.000 0.00 0.00 0.00 2.08
755 759 0.396417 AGCCGTGCTCCAGAGTCTAT 60.396 55.000 0.00 0.00 30.62 1.98
756 760 0.255033 TAGCCGTGCTCCAGAGTCTA 59.745 55.000 1.46 0.00 40.44 2.59
787 791 7.888021 AGGATTGTTGGTACATGATCAAAGTAA 59.112 33.333 11.58 0.58 39.30 2.24
813 817 6.767524 AGCGTCCATAAAACCATTCATTAA 57.232 33.333 0.00 0.00 0.00 1.40
861 896 4.796495 GGGACACGTGGGATGCCC 62.796 72.222 21.57 17.07 45.71 5.36
881 917 1.152312 AGTGTCCCGGACCAGAAGT 60.152 57.895 15.24 0.00 0.00 3.01
928 964 2.092914 TCAGCAGGATAGTCGACTGAGA 60.093 50.000 28.12 8.81 34.21 3.27
1147 1185 2.678190 GCTTGAGCTGGTTCTTACGGAT 60.678 50.000 0.00 0.00 38.21 4.18
1148 1186 1.337823 GCTTGAGCTGGTTCTTACGGA 60.338 52.381 0.00 0.00 38.21 4.69
1254 1292 4.247380 CGGATGCCCAGCTCCCTC 62.247 72.222 0.00 0.00 0.00 4.30
1362 1400 2.642311 TCACAAGAATCCCACCTTAGCA 59.358 45.455 0.00 0.00 0.00 3.49
1406 1445 3.732849 GACCTCCCCAGGCCCAAG 61.733 72.222 0.00 0.00 45.05 3.61
1411 1450 2.616458 AACCATGACCTCCCCAGGC 61.616 63.158 0.00 0.00 45.05 4.85
1412 1451 1.304282 CAACCATGACCTCCCCAGG 59.696 63.158 0.00 0.00 46.87 4.45
1556 1595 4.086199 GCAATGTGCAATCCCAAAAATG 57.914 40.909 0.00 0.00 44.26 2.32
1612 1667 4.083217 GCAAAGCAATTTGATGATGGCAAA 60.083 37.500 0.00 0.00 39.31 3.68
1613 1668 3.437395 GCAAAGCAATTTGATGATGGCAA 59.563 39.130 0.00 0.00 33.95 4.52
1614 1669 3.004171 GCAAAGCAATTTGATGATGGCA 58.996 40.909 0.00 0.00 33.95 4.92
1615 1670 2.353579 GGCAAAGCAATTTGATGATGGC 59.646 45.455 10.14 10.14 33.95 4.40
1616 1671 3.601435 TGGCAAAGCAATTTGATGATGG 58.399 40.909 0.00 0.00 33.95 3.51
1617 1672 4.873259 TGATGGCAAAGCAATTTGATGATG 59.127 37.500 0.00 0.00 33.95 3.07
1618 1673 5.092554 TGATGGCAAAGCAATTTGATGAT 57.907 34.783 0.00 0.00 33.95 2.45
1619 1674 4.538746 TGATGGCAAAGCAATTTGATGA 57.461 36.364 0.00 0.00 33.95 2.92
1620 1675 4.873259 TGATGATGGCAAAGCAATTTGATG 59.127 37.500 0.00 0.00 33.95 3.07
1621 1676 5.092554 TGATGATGGCAAAGCAATTTGAT 57.907 34.783 0.00 0.00 33.95 2.57
1622 1677 4.538746 TGATGATGGCAAAGCAATTTGA 57.461 36.364 0.00 0.00 33.95 2.69
1623 1678 5.614923 TTTGATGATGGCAAAGCAATTTG 57.385 34.783 5.26 0.00 32.04 2.32
1624 1679 5.873179 CTTTGATGATGGCAAAGCAATTT 57.127 34.783 5.26 0.00 43.73 1.82
1631 1686 5.534207 ACAGAAACTTTGATGATGGCAAA 57.466 34.783 0.00 0.00 34.40 3.68
1632 1687 5.534207 AACAGAAACTTTGATGATGGCAA 57.466 34.783 0.00 0.00 0.00 4.52
1633 1688 5.534207 AAACAGAAACTTTGATGATGGCA 57.466 34.783 0.00 0.00 0.00 4.92
1634 1689 5.178067 CCAAAACAGAAACTTTGATGATGGC 59.822 40.000 0.00 0.00 35.03 4.40
1635 1690 5.697633 CCCAAAACAGAAACTTTGATGATGG 59.302 40.000 0.00 0.00 35.03 3.51
1676 1731 7.095017 CCCTGATCTAGAAACTCAAACAGAAAC 60.095 40.741 0.00 0.00 0.00 2.78
1755 1814 2.626780 GGGAGAAACAAGCACGCCC 61.627 63.158 0.00 0.00 36.60 6.13
2597 2656 0.318614 GTTGTTTCCCACACATGGCG 60.319 55.000 0.00 0.00 45.76 5.69
2615 2674 5.530915 TCGATCTGTCAAAATTGTCTTTGGT 59.469 36.000 0.00 0.00 37.00 3.67
2978 3037 7.004086 TCTCACAACCCAAGTATTCTTTCATT 58.996 34.615 0.00 0.00 0.00 2.57
3196 3255 1.018910 GCCGCAACCGTAAACCATAT 58.981 50.000 0.00 0.00 0.00 1.78
3576 3635 1.880340 GATCCGACTGGCTTGCGAG 60.880 63.158 0.00 0.00 34.14 5.03
3737 3796 5.998363 AGTAACTTCACACATCTTCTTTCCC 59.002 40.000 0.00 0.00 0.00 3.97
3750 3809 3.804786 TCCACGACAAGTAACTTCACA 57.195 42.857 0.00 0.00 0.00 3.58
3762 3821 2.920724 TCCTCACAATTTCCACGACA 57.079 45.000 0.00 0.00 0.00 4.35
3777 3836 5.722021 TTCTGCCTTTTATTGGTTTCCTC 57.278 39.130 0.00 0.00 0.00 3.71
4037 4096 4.757149 AGAGAAGCTAAACCACATTCACAC 59.243 41.667 0.00 0.00 0.00 3.82
4107 4169 1.617357 ACGAAGGTTCTGTGAGGTACC 59.383 52.381 2.73 2.73 0.00 3.34
4632 4840 2.429494 TGCGGTCAGGCAATCACA 59.571 55.556 0.00 0.00 40.59 3.58
5141 7653 1.286501 GTACATGCTCGCCGAATTGA 58.713 50.000 0.00 0.00 0.00 2.57
5161 7673 0.235926 GACTCGGCTTTGCTGTGTTC 59.764 55.000 7.38 0.00 40.91 3.18
5162 7674 0.463654 TGACTCGGCTTTGCTGTGTT 60.464 50.000 7.38 0.00 40.91 3.32
5164 7676 0.040958 GTTGACTCGGCTTTGCTGTG 60.041 55.000 0.00 0.00 36.18 3.66
5168 7680 0.944386 TCAAGTTGACTCGGCTTTGC 59.056 50.000 0.08 0.00 0.00 3.68
5169 7681 1.070577 CGTCAAGTTGACTCGGCTTTG 60.071 52.381 28.53 10.78 44.85 2.77
5170 7682 1.202486 TCGTCAAGTTGACTCGGCTTT 60.202 47.619 28.53 0.00 44.85 3.51
5171 7683 0.387929 TCGTCAAGTTGACTCGGCTT 59.612 50.000 28.53 0.00 44.85 4.35
5172 7684 0.039074 CTCGTCAAGTTGACTCGGCT 60.039 55.000 28.53 0.00 44.85 5.52
5173 7685 1.618640 GCTCGTCAAGTTGACTCGGC 61.619 60.000 28.53 23.94 44.85 5.54
5174 7686 0.318699 TGCTCGTCAAGTTGACTCGG 60.319 55.000 28.53 19.67 44.85 4.63
5175 7687 1.388093 CATGCTCGTCAAGTTGACTCG 59.612 52.381 28.53 20.71 44.85 4.18
5176 7688 2.408050 ACATGCTCGTCAAGTTGACTC 58.592 47.619 28.53 18.98 44.85 3.36
5177 7689 2.533266 ACATGCTCGTCAAGTTGACT 57.467 45.000 28.53 11.02 44.85 3.41
5178 7690 3.057019 TGTACATGCTCGTCAAGTTGAC 58.943 45.455 23.53 23.53 43.65 3.18
5179 7691 3.057019 GTGTACATGCTCGTCAAGTTGA 58.943 45.455 0.08 0.08 0.00 3.18
5180 7692 2.799978 TGTGTACATGCTCGTCAAGTTG 59.200 45.455 0.00 0.00 0.00 3.16
5181 7693 3.106242 TGTGTACATGCTCGTCAAGTT 57.894 42.857 0.00 0.00 0.00 2.66
5182 7694 2.800544 GTTGTGTACATGCTCGTCAAGT 59.199 45.455 0.00 0.00 0.00 3.16
5183 7695 2.799978 TGTTGTGTACATGCTCGTCAAG 59.200 45.455 0.00 0.00 0.00 3.02
5184 7696 2.542178 GTGTTGTGTACATGCTCGTCAA 59.458 45.455 0.00 0.00 39.39 3.18
5185 7697 2.131972 GTGTTGTGTACATGCTCGTCA 58.868 47.619 0.00 0.00 39.39 4.35
5186 7698 2.131972 TGTGTTGTGTACATGCTCGTC 58.868 47.619 0.00 0.00 39.39 4.20
5187 7699 2.135139 CTGTGTTGTGTACATGCTCGT 58.865 47.619 0.00 0.00 39.39 4.18
5188 7700 1.136252 GCTGTGTTGTGTACATGCTCG 60.136 52.381 0.00 0.00 39.39 5.03
5189 7701 1.872952 TGCTGTGTTGTGTACATGCTC 59.127 47.619 0.00 0.00 39.39 4.26
5190 7702 1.875514 CTGCTGTGTTGTGTACATGCT 59.124 47.619 0.00 0.00 39.39 3.79
5191 7703 1.069022 CCTGCTGTGTTGTGTACATGC 60.069 52.381 0.00 0.00 39.39 4.06
5192 7704 1.069022 GCCTGCTGTGTTGTGTACATG 60.069 52.381 0.00 0.00 39.39 3.21
5193 7705 1.238439 GCCTGCTGTGTTGTGTACAT 58.762 50.000 0.00 0.00 39.39 2.29
5194 7706 0.817634 GGCCTGCTGTGTTGTGTACA 60.818 55.000 0.00 0.00 0.00 2.90
5195 7707 0.535102 AGGCCTGCTGTGTTGTGTAC 60.535 55.000 3.11 0.00 0.00 2.90
5196 7708 0.182537 AAGGCCTGCTGTGTTGTGTA 59.817 50.000 5.69 0.00 0.00 2.90
5197 7709 1.076777 AAGGCCTGCTGTGTTGTGT 60.077 52.632 5.69 0.00 0.00 3.72
5198 7710 1.102809 TGAAGGCCTGCTGTGTTGTG 61.103 55.000 13.40 0.00 0.00 3.33
5199 7711 1.103398 GTGAAGGCCTGCTGTGTTGT 61.103 55.000 13.40 0.00 0.00 3.32
5200 7712 1.656441 GTGAAGGCCTGCTGTGTTG 59.344 57.895 13.40 0.00 0.00 3.33
5201 7713 1.529244 GGTGAAGGCCTGCTGTGTT 60.529 57.895 13.40 0.00 0.00 3.32
5202 7714 2.113986 GGTGAAGGCCTGCTGTGT 59.886 61.111 13.40 0.00 0.00 3.72
5203 7715 2.449031 TACGGTGAAGGCCTGCTGTG 62.449 60.000 13.40 3.59 0.00 3.66
5204 7716 2.214216 TACGGTGAAGGCCTGCTGT 61.214 57.895 13.40 15.89 0.00 4.40
5480 8139 1.507713 CATGTGCTTCGTGTTCGCG 60.508 57.895 0.00 0.00 36.96 5.87
5530 8189 4.699522 AGAACGGGCACGGCTTCC 62.700 66.667 15.46 0.00 46.48 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.