Multiple sequence alignment - TraesCS2D01G414800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G414800 chr2D 100.000 2483 0 0 1 2483 528806272 528808754 0.000000e+00 4586.0
1 TraesCS2D01G414800 chr2D 100.000 32 0 0 1864 1895 261989258 261989227 2.670000e-05 60.2
2 TraesCS2D01G414800 chr2B 94.659 1292 47 13 582 1865 627150940 627152217 0.000000e+00 1984.0
3 TraesCS2D01G414800 chr2B 89.318 337 31 3 1927 2262 627152321 627152653 3.820000e-113 418.0
4 TraesCS2D01G414800 chr2B 85.156 256 29 8 5 254 213031482 213031230 1.140000e-63 254.0
5 TraesCS2D01G414800 chr2B 92.308 130 9 1 2322 2451 627152647 627152775 1.520000e-42 183.0
6 TraesCS2D01G414800 chr2B 94.444 36 0 2 1860 1895 417082924 417082957 1.000000e-03 54.7
7 TraesCS2D01G414800 chr2A 90.156 1473 92 30 704 2168 673369932 673371359 0.000000e+00 1868.0
8 TraesCS2D01G414800 chr2A 93.443 61 3 1 616 676 673369866 673369925 3.400000e-14 89.8
9 TraesCS2D01G414800 chr2A 94.444 54 3 0 2208 2261 673371368 673371421 1.580000e-12 84.2
10 TraesCS2D01G414800 chr2A 100.000 29 0 0 1867 1895 315110744 315110716 1.000000e-03 54.7
11 TraesCS2D01G414800 chr4B 84.364 275 30 12 5 271 527489851 527489582 8.810000e-65 257.0
12 TraesCS2D01G414800 chr7A 82.171 258 32 13 5 254 663821510 663821761 2.500000e-50 209.0
13 TraesCS2D01G414800 chr7D 100.000 34 0 0 1862 1895 578817971 578817938 2.060000e-06 63.9
14 TraesCS2D01G414800 chr7B 100.000 32 0 0 1864 1895 646998472 646998441 2.670000e-05 60.2
15 TraesCS2D01G414800 chr5A 100.000 29 0 0 1867 1895 457092968 457092940 1.000000e-03 54.7
16 TraesCS2D01G414800 chr6A 100.000 28 0 0 1862 1889 460450419 460450446 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G414800 chr2D 528806272 528808754 2482 False 4586.000000 4586 100.000 1 2483 1 chr2D.!!$F1 2482
1 TraesCS2D01G414800 chr2B 627150940 627152775 1835 False 861.666667 1984 92.095 582 2451 3 chr2B.!!$F2 1869
2 TraesCS2D01G414800 chr2A 673369866 673371421 1555 False 680.666667 1868 92.681 616 2261 3 chr2A.!!$F1 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 561 0.107945 GCATATCGATGAGGGAGGGC 60.108 60.0 8.54 0.0 34.73 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 1895 0.179006 GATGCCCCTGGGTTCAGATC 60.179 60.0 12.71 1.5 43.49 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 8.665643 ATTCAGAAAAGCATTCACAAAAATCA 57.334 26.923 5.24 0.00 0.00 2.57
95 96 8.665643 TTCAGAAAAGCATTCACAAAAATCAT 57.334 26.923 5.24 0.00 0.00 2.45
96 97 8.078959 TCAGAAAAGCATTCACAAAAATCATG 57.921 30.769 5.24 0.00 0.00 3.07
97 98 7.927092 TCAGAAAAGCATTCACAAAAATCATGA 59.073 29.630 0.00 0.00 0.00 3.07
98 99 8.552865 CAGAAAAGCATTCACAAAAATCATGAA 58.447 29.630 0.00 0.00 36.81 2.57
99 100 9.280174 AGAAAAGCATTCACAAAAATCATGAAT 57.720 25.926 0.00 0.00 42.43 2.57
100 101 9.887406 GAAAAGCATTCACAAAAATCATGAATT 57.113 25.926 0.00 0.00 40.30 2.17
101 102 9.672086 AAAAGCATTCACAAAAATCATGAATTG 57.328 25.926 0.00 8.49 40.30 2.32
102 103 8.610248 AAGCATTCACAAAAATCATGAATTGA 57.390 26.923 19.88 3.24 40.30 2.57
103 104 8.610248 AGCATTCACAAAAATCATGAATTGAA 57.390 26.923 19.88 10.75 40.30 2.69
104 105 9.058174 AGCATTCACAAAAATCATGAATTGAAA 57.942 25.926 19.88 14.81 40.30 2.69
105 106 9.666626 GCATTCACAAAAATCATGAATTGAAAA 57.333 25.926 19.88 14.57 40.30 2.29
117 118 9.820725 ATCATGAATTGAAAAGAAAAGTTCACA 57.179 25.926 0.00 0.00 38.03 3.58
118 119 9.650539 TCATGAATTGAAAAGAAAAGTTCACAA 57.349 25.926 0.00 0.00 33.58 3.33
135 136 9.665719 AAGTTCACAAATATGGAAAAAGTTTGT 57.334 25.926 0.00 0.00 41.98 2.83
147 148 9.838975 ATGGAAAAAGTTTGTGAATTTGAAAAC 57.161 25.926 0.00 0.00 33.65 2.43
148 149 8.840321 TGGAAAAAGTTTGTGAATTTGAAAACA 58.160 25.926 11.18 0.00 35.46 2.83
149 150 9.670719 GGAAAAAGTTTGTGAATTTGAAAACAA 57.329 25.926 11.18 0.00 35.46 2.83
211 212 9.710900 AAAAAGTTCATCAAAACTGAAAAGAGT 57.289 25.926 0.00 0.00 39.40 3.24
212 213 9.710900 AAAAGTTCATCAAAACTGAAAAGAGTT 57.289 25.926 0.00 0.00 39.40 3.01
261 262 8.962884 AACTTTATGAAAAAGTTCTGGCATTT 57.037 26.923 9.47 0.00 44.50 2.32
263 264 9.696917 ACTTTATGAAAAAGTTCTGGCATTTAG 57.303 29.630 0.00 0.00 37.18 1.85
264 265 8.532977 TTTATGAAAAAGTTCTGGCATTTAGC 57.467 30.769 0.00 0.00 37.28 3.09
265 266 5.528043 TGAAAAAGTTCTGGCATTTAGCA 57.472 34.783 0.00 0.00 38.74 3.49
266 267 5.911752 TGAAAAAGTTCTGGCATTTAGCAA 58.088 33.333 0.00 0.00 38.74 3.91
267 268 6.344500 TGAAAAAGTTCTGGCATTTAGCAAA 58.656 32.000 0.00 0.00 38.74 3.68
268 269 6.820656 TGAAAAAGTTCTGGCATTTAGCAAAA 59.179 30.769 0.00 0.00 38.74 2.44
269 270 7.335422 TGAAAAAGTTCTGGCATTTAGCAAAAA 59.665 29.630 0.00 0.00 38.74 1.94
300 301 9.508642 AAAAAGAACAAAACCATTCCAGTAAAA 57.491 25.926 0.00 0.00 0.00 1.52
301 302 9.508642 AAAAGAACAAAACCATTCCAGTAAAAA 57.491 25.926 0.00 0.00 0.00 1.94
327 328 3.909776 AAAGAAAAACCCGAACGATCC 57.090 42.857 0.00 0.00 0.00 3.36
328 329 2.554370 AGAAAAACCCGAACGATCCA 57.446 45.000 0.00 0.00 0.00 3.41
329 330 2.853705 AGAAAAACCCGAACGATCCAA 58.146 42.857 0.00 0.00 0.00 3.53
330 331 2.812011 AGAAAAACCCGAACGATCCAAG 59.188 45.455 0.00 0.00 0.00 3.61
331 332 2.554370 AAAACCCGAACGATCCAAGA 57.446 45.000 0.00 0.00 0.00 3.02
332 333 2.554370 AAACCCGAACGATCCAAGAA 57.446 45.000 0.00 0.00 0.00 2.52
333 334 2.554370 AACCCGAACGATCCAAGAAA 57.446 45.000 0.00 0.00 0.00 2.52
334 335 2.554370 ACCCGAACGATCCAAGAAAA 57.446 45.000 0.00 0.00 0.00 2.29
335 336 2.853705 ACCCGAACGATCCAAGAAAAA 58.146 42.857 0.00 0.00 0.00 1.94
380 381 9.546428 AAAAATTCATCGATTTGAAGGAAAAGT 57.454 25.926 7.47 0.00 38.90 2.66
381 382 9.546428 AAAATTCATCGATTTGAAGGAAAAGTT 57.454 25.926 7.47 0.00 38.90 2.66
382 383 8.748380 AATTCATCGATTTGAAGGAAAAGTTC 57.252 30.769 7.47 0.00 38.90 3.01
383 384 6.875948 TCATCGATTTGAAGGAAAAGTTCA 57.124 33.333 0.00 0.00 31.98 3.18
384 385 7.452880 TCATCGATTTGAAGGAAAAGTTCAT 57.547 32.000 0.00 0.00 33.95 2.57
385 386 7.307694 TCATCGATTTGAAGGAAAAGTTCATG 58.692 34.615 0.00 0.00 33.95 3.07
386 387 6.633500 TCGATTTGAAGGAAAAGTTCATGT 57.367 33.333 0.00 0.00 33.95 3.21
387 388 7.737972 TCGATTTGAAGGAAAAGTTCATGTA 57.262 32.000 0.00 0.00 33.95 2.29
388 389 8.335532 TCGATTTGAAGGAAAAGTTCATGTAT 57.664 30.769 0.00 0.00 33.95 2.29
389 390 8.792633 TCGATTTGAAGGAAAAGTTCATGTATT 58.207 29.630 0.00 0.00 33.95 1.89
390 391 9.410556 CGATTTGAAGGAAAAGTTCATGTATTT 57.589 29.630 0.00 0.00 33.95 1.40
392 393 7.945033 TTGAAGGAAAAGTTCATGTATTTGC 57.055 32.000 0.00 0.00 33.95 3.68
393 394 7.048629 TGAAGGAAAAGTTCATGTATTTGCA 57.951 32.000 0.00 0.00 0.00 4.08
394 395 7.495901 TGAAGGAAAAGTTCATGTATTTGCAA 58.504 30.769 0.00 0.00 0.00 4.08
395 396 7.984050 TGAAGGAAAAGTTCATGTATTTGCAAA 59.016 29.630 15.44 15.44 0.00 3.68
396 397 8.907222 AAGGAAAAGTTCATGTATTTGCAAAT 57.093 26.923 26.72 26.72 0.00 2.32
397 398 9.995003 AAGGAAAAGTTCATGTATTTGCAAATA 57.005 25.926 24.63 24.63 0.00 1.40
398 399 9.995003 AGGAAAAGTTCATGTATTTGCAAATAA 57.005 25.926 28.75 19.95 33.05 1.40
403 404 9.638239 AAGTTCATGTATTTGCAAATAATTCGT 57.362 25.926 28.75 17.18 33.05 3.85
404 405 9.289303 AGTTCATGTATTTGCAAATAATTCGTC 57.711 29.630 28.75 17.55 33.05 4.20
405 406 7.890879 TCATGTATTTGCAAATAATTCGTCG 57.109 32.000 28.75 15.15 33.05 5.12
406 407 7.689299 TCATGTATTTGCAAATAATTCGTCGA 58.311 30.769 28.75 16.76 33.05 4.20
407 408 7.638295 TCATGTATTTGCAAATAATTCGTCGAC 59.362 33.333 28.75 17.97 33.05 4.20
408 409 6.832804 TGTATTTGCAAATAATTCGTCGACA 58.167 32.000 28.75 20.00 33.05 4.35
409 410 7.468441 TGTATTTGCAAATAATTCGTCGACAT 58.532 30.769 28.75 5.54 33.05 3.06
410 411 6.795053 ATTTGCAAATAATTCGTCGACATG 57.205 33.333 22.95 0.00 0.00 3.21
411 412 4.271590 TGCAAATAATTCGTCGACATGG 57.728 40.909 17.16 0.00 0.00 3.66
412 413 3.687212 TGCAAATAATTCGTCGACATGGT 59.313 39.130 17.16 0.02 0.00 3.55
413 414 4.201773 TGCAAATAATTCGTCGACATGGTC 60.202 41.667 17.16 0.00 0.00 4.02
431 432 8.970691 ACATGGTCGAAGAAAAATAGAAAATG 57.029 30.769 0.00 0.00 39.69 2.32
432 433 8.792633 ACATGGTCGAAGAAAAATAGAAAATGA 58.207 29.630 0.00 0.00 39.69 2.57
433 434 9.624697 CATGGTCGAAGAAAAATAGAAAATGAA 57.375 29.630 0.00 0.00 39.69 2.57
437 438 9.995379 GTCGAAGAAAAATAGAAAATGAAAAGC 57.005 29.630 0.00 0.00 39.69 3.51
438 439 8.901748 TCGAAGAAAAATAGAAAATGAAAAGCG 58.098 29.630 0.00 0.00 0.00 4.68
439 440 8.901748 CGAAGAAAAATAGAAAATGAAAAGCGA 58.098 29.630 0.00 0.00 0.00 4.93
453 454 7.832503 ATGAAAAGCGAAAAAGATAAATGGG 57.167 32.000 0.00 0.00 0.00 4.00
454 455 6.987386 TGAAAAGCGAAAAAGATAAATGGGA 58.013 32.000 0.00 0.00 0.00 4.37
455 456 7.437748 TGAAAAGCGAAAAAGATAAATGGGAA 58.562 30.769 0.00 0.00 0.00 3.97
456 457 7.928706 TGAAAAGCGAAAAAGATAAATGGGAAA 59.071 29.630 0.00 0.00 0.00 3.13
457 458 8.669946 AAAAGCGAAAAAGATAAATGGGAAAA 57.330 26.923 0.00 0.00 0.00 2.29
458 459 7.889589 AAGCGAAAAAGATAAATGGGAAAAG 57.110 32.000 0.00 0.00 0.00 2.27
459 460 7.227049 AGCGAAAAAGATAAATGGGAAAAGA 57.773 32.000 0.00 0.00 0.00 2.52
460 461 7.666623 AGCGAAAAAGATAAATGGGAAAAGAA 58.333 30.769 0.00 0.00 0.00 2.52
461 462 8.147704 AGCGAAAAAGATAAATGGGAAAAGAAA 58.852 29.630 0.00 0.00 0.00 2.52
462 463 8.769891 GCGAAAAAGATAAATGGGAAAAGAAAA 58.230 29.630 0.00 0.00 0.00 2.29
466 467 9.573166 AAAAGATAAATGGGAAAAGAAAAAGGG 57.427 29.630 0.00 0.00 0.00 3.95
467 468 7.257790 AGATAAATGGGAAAAGAAAAAGGGG 57.742 36.000 0.00 0.00 0.00 4.79
468 469 4.722526 AAATGGGAAAAGAAAAAGGGGG 57.277 40.909 0.00 0.00 0.00 5.40
469 470 3.646867 ATGGGAAAAGAAAAAGGGGGA 57.353 42.857 0.00 0.00 0.00 4.81
470 471 3.423058 TGGGAAAAGAAAAAGGGGGAA 57.577 42.857 0.00 0.00 0.00 3.97
471 472 3.737263 TGGGAAAAGAAAAAGGGGGAAA 58.263 40.909 0.00 0.00 0.00 3.13
472 473 4.112331 TGGGAAAAGAAAAAGGGGGAAAA 58.888 39.130 0.00 0.00 0.00 2.29
473 474 4.729370 TGGGAAAAGAAAAAGGGGGAAAAT 59.271 37.500 0.00 0.00 0.00 1.82
474 475 5.911766 TGGGAAAAGAAAAAGGGGGAAAATA 59.088 36.000 0.00 0.00 0.00 1.40
475 476 6.390165 TGGGAAAAGAAAAAGGGGGAAAATAA 59.610 34.615 0.00 0.00 0.00 1.40
476 477 7.091947 TGGGAAAAGAAAAAGGGGGAAAATAAA 60.092 33.333 0.00 0.00 0.00 1.40
477 478 7.780745 GGGAAAAGAAAAAGGGGGAAAATAAAA 59.219 33.333 0.00 0.00 0.00 1.52
478 479 8.846211 GGAAAAGAAAAAGGGGGAAAATAAAAG 58.154 33.333 0.00 0.00 0.00 2.27
479 480 9.621629 GAAAAGAAAAAGGGGGAAAATAAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
480 481 9.983024 AAAAGAAAAAGGGGGAAAATAAAAGAA 57.017 25.926 0.00 0.00 0.00 2.52
482 483 9.793259 AAGAAAAAGGGGGAAAATAAAAGAATC 57.207 29.630 0.00 0.00 0.00 2.52
483 484 8.944138 AGAAAAAGGGGGAAAATAAAAGAATCA 58.056 29.630 0.00 0.00 0.00 2.57
484 485 9.567776 GAAAAAGGGGGAAAATAAAAGAATCAA 57.432 29.630 0.00 0.00 0.00 2.57
485 486 9.928618 AAAAAGGGGGAAAATAAAAGAATCAAA 57.071 25.926 0.00 0.00 0.00 2.69
486 487 9.573166 AAAAGGGGGAAAATAAAAGAATCAAAG 57.427 29.630 0.00 0.00 0.00 2.77
487 488 8.504811 AAGGGGGAAAATAAAAGAATCAAAGA 57.495 30.769 0.00 0.00 0.00 2.52
488 489 8.685257 AGGGGGAAAATAAAAGAATCAAAGAT 57.315 30.769 0.00 0.00 0.00 2.40
489 490 9.782900 AGGGGGAAAATAAAAGAATCAAAGATA 57.217 29.630 0.00 0.00 0.00 1.98
523 524 8.827177 TGTAAGTTACAAGAACCTACTCATTG 57.173 34.615 13.36 0.00 35.38 2.82
524 525 7.876068 TGTAAGTTACAAGAACCTACTCATTGG 59.124 37.037 13.36 0.00 35.38 3.16
525 526 5.246307 AGTTACAAGAACCTACTCATTGGC 58.754 41.667 0.00 0.00 0.00 4.52
526 527 2.699954 ACAAGAACCTACTCATTGGCG 58.300 47.619 0.00 0.00 0.00 5.69
527 528 2.009774 CAAGAACCTACTCATTGGCGG 58.990 52.381 0.00 0.00 0.00 6.13
528 529 0.541863 AGAACCTACTCATTGGCGGG 59.458 55.000 0.00 0.00 0.00 6.13
529 530 0.463833 GAACCTACTCATTGGCGGGG 60.464 60.000 0.00 0.00 0.00 5.73
530 531 1.205460 AACCTACTCATTGGCGGGGT 61.205 55.000 0.00 0.00 0.00 4.95
531 532 1.153168 CCTACTCATTGGCGGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
532 533 1.153168 CTACTCATTGGCGGGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
533 534 1.910580 CTACTCATTGGCGGGGTGGT 61.911 60.000 0.00 0.00 0.00 4.16
534 535 1.493854 TACTCATTGGCGGGGTGGTT 61.494 55.000 0.00 0.00 0.00 3.67
535 536 1.301623 CTCATTGGCGGGGTGGTTA 59.698 57.895 0.00 0.00 0.00 2.85
536 537 1.001887 TCATTGGCGGGGTGGTTAC 60.002 57.895 0.00 0.00 0.00 2.50
537 538 1.303724 CATTGGCGGGGTGGTTACA 60.304 57.895 0.00 0.00 0.00 2.41
538 539 1.303806 ATTGGCGGGGTGGTTACAC 60.304 57.895 0.00 0.00 46.97 2.90
558 559 2.957491 GAGCATATCGATGAGGGAGG 57.043 55.000 8.54 0.00 34.73 4.30
559 560 1.480137 GAGCATATCGATGAGGGAGGG 59.520 57.143 8.54 0.00 34.73 4.30
560 561 0.107945 GCATATCGATGAGGGAGGGC 60.108 60.000 8.54 0.00 34.73 5.19
561 562 0.174389 CATATCGATGAGGGAGGGCG 59.826 60.000 8.54 0.00 34.73 6.13
562 563 1.608717 ATATCGATGAGGGAGGGCGC 61.609 60.000 8.54 0.00 0.00 6.53
563 564 2.715181 TATCGATGAGGGAGGGCGCT 62.715 60.000 8.54 1.38 40.40 5.92
564 565 4.598894 CGATGAGGGAGGGCGCTG 62.599 72.222 8.56 0.00 37.44 5.18
565 566 4.247380 GATGAGGGAGGGCGCTGG 62.247 72.222 8.56 0.00 37.44 4.85
570 571 4.785453 GGGAGGGCGCTGGTGAAG 62.785 72.222 8.56 0.00 0.00 3.02
578 579 2.964978 GCTGGTGAAGCGCCAAAT 59.035 55.556 2.29 0.00 43.83 2.32
579 580 1.444895 GCTGGTGAAGCGCCAAATG 60.445 57.895 2.29 0.00 43.83 2.32
580 581 1.213537 CTGGTGAAGCGCCAAATGG 59.786 57.895 2.29 0.00 43.83 3.16
581 582 2.216750 CTGGTGAAGCGCCAAATGGG 62.217 60.000 2.29 0.00 43.83 4.00
582 583 1.976474 GGTGAAGCGCCAAATGGGA 60.976 57.895 2.29 0.00 40.01 4.37
583 584 1.531739 GGTGAAGCGCCAAATGGGAA 61.532 55.000 2.29 0.00 40.01 3.97
584 585 0.109132 GTGAAGCGCCAAATGGGAAG 60.109 55.000 2.29 0.00 40.01 3.46
585 586 1.153765 GAAGCGCCAAATGGGAAGC 60.154 57.895 2.29 0.00 40.01 3.86
588 589 4.496927 CGCCAAATGGGAAGCGCC 62.497 66.667 2.29 0.00 42.31 6.53
597 598 2.280865 GGAAGCGCCCGGATTAGG 60.281 66.667 0.73 0.00 0.00 2.69
628 629 0.613260 TGTTCCCCGTTGATCTGAGG 59.387 55.000 0.00 0.00 0.00 3.86
641 642 6.591834 CGTTGATCTGAGGTAAGAAATGAAGT 59.408 38.462 0.00 0.00 0.00 3.01
687 689 1.818642 GCATGGACTAGCCCATCATC 58.181 55.000 7.74 0.00 44.69 2.92
688 690 1.072806 GCATGGACTAGCCCATCATCA 59.927 52.381 7.74 0.00 44.69 3.07
700 702 2.551721 CCCATCATCATACCTGCAGACC 60.552 54.545 17.39 0.00 0.00 3.85
761 764 1.209127 CAAATCGAACCACGGCCAC 59.791 57.895 2.24 0.00 42.82 5.01
950 957 1.153939 CTCGCTCCCTTCACTCACG 60.154 63.158 0.00 0.00 0.00 4.35
978 985 3.680196 TCCGGTAGTGCCCCTCCT 61.680 66.667 0.00 0.00 0.00 3.69
1116 1126 3.429141 CACCAGCAGAAGCAGCCG 61.429 66.667 0.00 0.00 45.49 5.52
1492 1502 1.604915 GGGGCTTGAAGAGGAGGTC 59.395 63.158 0.00 0.00 0.00 3.85
1529 1539 1.501337 CCGGTGCGTGGATGATGATG 61.501 60.000 0.00 0.00 0.00 3.07
1748 1761 3.263170 TGCTGGATGTACTATGGTGTGTT 59.737 43.478 0.00 0.00 0.00 3.32
1763 1776 2.031682 GTGTGTTCTTGTGGATGTCTGC 60.032 50.000 0.00 0.00 0.00 4.26
1764 1777 1.537202 GTGTTCTTGTGGATGTCTGCC 59.463 52.381 0.00 0.00 0.00 4.85
1832 1845 5.410924 TGTTCTTGTGGATGTCTCTTATCG 58.589 41.667 0.00 0.00 0.00 2.92
1846 1859 4.807834 TCTCTTATCGCTTCTGAAATGCAG 59.192 41.667 0.00 0.00 46.31 4.41
1865 1886 2.495270 CAGCTTGCAGAAGAGACTAGGA 59.505 50.000 0.00 0.00 0.00 2.94
1866 1887 2.760092 AGCTTGCAGAAGAGACTAGGAG 59.240 50.000 0.00 0.00 0.00 3.69
1867 1888 2.495669 GCTTGCAGAAGAGACTAGGAGT 59.504 50.000 0.00 0.00 0.00 3.85
1868 1889 3.675775 GCTTGCAGAAGAGACTAGGAGTG 60.676 52.174 0.00 0.00 0.00 3.51
1869 1890 2.451490 TGCAGAAGAGACTAGGAGTGG 58.549 52.381 0.00 0.00 0.00 4.00
1871 1892 1.754226 CAGAAGAGACTAGGAGTGGGC 59.246 57.143 0.00 0.00 0.00 5.36
1872 1893 1.359474 AGAAGAGACTAGGAGTGGGCA 59.641 52.381 0.00 0.00 0.00 5.36
1873 1894 1.478916 GAAGAGACTAGGAGTGGGCAC 59.521 57.143 0.00 0.00 0.00 5.01
1874 1895 0.681564 AGAGACTAGGAGTGGGCACG 60.682 60.000 0.00 0.00 36.20 5.34
1875 1896 0.680280 GAGACTAGGAGTGGGCACGA 60.680 60.000 0.00 0.00 36.20 4.35
1877 1898 0.386113 GACTAGGAGTGGGCACGATC 59.614 60.000 0.00 0.00 36.20 3.69
1879 1900 0.387202 CTAGGAGTGGGCACGATCTG 59.613 60.000 0.00 0.00 36.20 2.90
1881 1902 0.904865 AGGAGTGGGCACGATCTGAA 60.905 55.000 0.00 0.00 36.20 3.02
1882 1903 0.741221 GGAGTGGGCACGATCTGAAC 60.741 60.000 0.00 0.00 36.20 3.18
1884 1905 1.745489 GTGGGCACGATCTGAACCC 60.745 63.158 0.00 3.65 41.24 4.11
1885 1906 2.668632 GGGCACGATCTGAACCCA 59.331 61.111 0.00 0.00 40.52 4.51
1887 1908 1.450312 GGCACGATCTGAACCCAGG 60.450 63.158 0.00 0.00 40.76 4.45
1888 1909 1.450312 GCACGATCTGAACCCAGGG 60.450 63.158 2.85 2.85 40.76 4.45
1889 1910 1.221840 CACGATCTGAACCCAGGGG 59.778 63.158 11.37 6.87 40.76 4.79
1892 1961 1.925888 GATCTGAACCCAGGGGCAT 59.074 57.895 11.37 0.00 40.76 4.40
1904 1973 1.815003 CAGGGGCATCTCTTGTGTTTC 59.185 52.381 0.00 0.00 0.00 2.78
1907 1976 2.290577 GGGGCATCTCTTGTGTTTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
1913 1982 6.989169 GGCATCTCTTGTGTTTCTCTACATAT 59.011 38.462 0.00 0.00 0.00 1.78
1914 1983 8.144478 GGCATCTCTTGTGTTTCTCTACATATA 58.856 37.037 0.00 0.00 0.00 0.86
1915 1984 9.703892 GCATCTCTTGTGTTTCTCTACATATAT 57.296 33.333 0.00 0.00 0.00 0.86
2024 2094 6.358974 TGTTAACAAGAGATCTGATGTCCA 57.641 37.500 5.64 0.86 0.00 4.02
2051 2121 6.179756 AGATGGACAATAATGTAGTGCAACA 58.820 36.000 0.00 0.00 40.74 3.33
2060 2130 9.624697 CAATAATGTAGTGCAACATAGTGTTTT 57.375 29.630 4.48 0.00 38.77 2.43
2083 2166 8.744008 TTTTATGAAACGTTTGAAGTGAACAA 57.256 26.923 20.10 0.00 0.00 2.83
2095 2178 5.477510 TGAAGTGAACAAACAAAGCAATGT 58.522 33.333 0.00 0.00 34.24 2.71
2109 2192 7.751732 ACAAAGCAATGTTTTTCCTTCTTTTC 58.248 30.769 0.00 0.00 0.00 2.29
2146 2230 5.536554 AATGCTTGTCGATGTTTCTAGTG 57.463 39.130 0.00 0.00 0.00 2.74
2148 2232 2.094417 GCTTGTCGATGTTTCTAGTGGC 59.906 50.000 0.00 0.00 0.00 5.01
2150 2234 4.744570 CTTGTCGATGTTTCTAGTGGCTA 58.255 43.478 0.00 0.00 0.00 3.93
2163 2247 4.913126 GGCTATATCGCCTTCGGG 57.087 61.111 10.95 0.00 46.63 5.14
2181 2265 0.038166 GGGTGATGCTGTTTCAGGGA 59.962 55.000 0.00 0.00 31.21 4.20
2189 2273 1.815003 GCTGTTTCAGGGAATGACTGG 59.185 52.381 0.00 0.00 37.77 4.00
2197 2281 5.557576 TCAGGGAATGACTGGATATTCTG 57.442 43.478 0.00 0.00 36.62 3.02
2209 2293 5.940470 ACTGGATATTCTGTTGTTCTGTTCC 59.060 40.000 0.00 0.00 0.00 3.62
2213 2297 6.592607 GGATATTCTGTTGTTCTGTTCCGTTA 59.407 38.462 0.00 0.00 0.00 3.18
2262 2346 4.848357 TGGGGAGATTGTTCAAAGATCTC 58.152 43.478 0.00 4.44 43.12 2.75
2263 2347 4.289410 TGGGGAGATTGTTCAAAGATCTCA 59.711 41.667 12.88 0.00 44.76 3.27
2264 2348 5.222109 TGGGGAGATTGTTCAAAGATCTCAA 60.222 40.000 12.88 0.00 44.76 3.02
2265 2349 5.356470 GGGGAGATTGTTCAAAGATCTCAAG 59.644 44.000 12.88 0.00 44.76 3.02
2266 2350 5.942826 GGGAGATTGTTCAAAGATCTCAAGT 59.057 40.000 12.88 0.00 44.76 3.16
2267 2351 6.093357 GGGAGATTGTTCAAAGATCTCAAGTC 59.907 42.308 12.88 0.00 44.76 3.01
2268 2352 6.878389 GGAGATTGTTCAAAGATCTCAAGTCT 59.122 38.462 12.88 1.57 44.76 3.24
2269 2353 7.390162 GGAGATTGTTCAAAGATCTCAAGTCTT 59.610 37.037 12.88 0.00 44.76 3.01
2270 2354 8.321650 AGATTGTTCAAAGATCTCAAGTCTTC 57.678 34.615 0.00 0.00 34.97 2.87
2271 2355 6.867662 TTGTTCAAAGATCTCAAGTCTTCC 57.132 37.500 0.00 0.00 34.97 3.46
2272 2356 5.308825 TGTTCAAAGATCTCAAGTCTTCCC 58.691 41.667 0.00 0.00 34.97 3.97
2273 2357 5.072329 TGTTCAAAGATCTCAAGTCTTCCCT 59.928 40.000 0.00 0.00 34.97 4.20
2274 2358 5.413309 TCAAAGATCTCAAGTCTTCCCTC 57.587 43.478 0.00 0.00 34.97 4.30
2275 2359 4.840680 TCAAAGATCTCAAGTCTTCCCTCA 59.159 41.667 0.00 0.00 34.97 3.86
2276 2360 5.307976 TCAAAGATCTCAAGTCTTCCCTCAA 59.692 40.000 0.00 0.00 34.97 3.02
2277 2361 5.832539 AAGATCTCAAGTCTTCCCTCAAA 57.167 39.130 0.00 0.00 30.34 2.69
2278 2362 5.832539 AGATCTCAAGTCTTCCCTCAAAA 57.167 39.130 0.00 0.00 0.00 2.44
2279 2363 6.192970 AGATCTCAAGTCTTCCCTCAAAAA 57.807 37.500 0.00 0.00 0.00 1.94
2323 2407 8.560355 TTTTTCTTTCCCTTTTTGAAAGGAAG 57.440 30.769 18.54 14.68 44.19 3.46
2324 2408 7.489239 TTTCTTTCCCTTTTTGAAAGGAAGA 57.511 32.000 18.54 16.31 45.56 2.87
2325 2409 7.675161 TTCTTTCCCTTTTTGAAAGGAAGAT 57.325 32.000 18.54 0.00 45.56 2.40
2326 2410 7.290110 TCTTTCCCTTTTTGAAAGGAAGATC 57.710 36.000 18.54 0.00 45.56 2.75
2327 2411 7.069344 TCTTTCCCTTTTTGAAAGGAAGATCT 58.931 34.615 18.54 0.00 45.56 2.75
2328 2412 6.901081 TTCCCTTTTTGAAAGGAAGATCTC 57.099 37.500 18.54 0.00 39.81 2.75
2329 2413 6.206180 TCCCTTTTTGAAAGGAAGATCTCT 57.794 37.500 18.54 0.00 39.81 3.10
2330 2414 7.329746 TCCCTTTTTGAAAGGAAGATCTCTA 57.670 36.000 18.54 0.00 39.81 2.43
2331 2415 7.398024 TCCCTTTTTGAAAGGAAGATCTCTAG 58.602 38.462 18.54 1.19 39.81 2.43
2346 2430 9.797556 GAAGATCTCTAGTCTAGAAAGGAAAAC 57.202 37.037 10.79 2.80 33.75 2.43
2364 2448 0.110486 ACAAAGGTGTTCCAGGCGAT 59.890 50.000 0.00 0.00 32.58 4.58
2373 2457 1.667724 GTTCCAGGCGATGACTGAATG 59.332 52.381 0.09 0.00 42.14 2.67
2380 2464 0.935898 CGATGACTGAATGCTCTGCC 59.064 55.000 0.00 0.00 0.00 4.85
2400 2484 3.119291 CCGCTCTGTTCTGATGTGATAC 58.881 50.000 0.00 0.00 0.00 2.24
2451 2535 1.799403 CTCTGCTGCTCTGTTCTGTTG 59.201 52.381 0.00 0.00 0.00 3.33
2452 2536 1.139654 TCTGCTGCTCTGTTCTGTTGT 59.860 47.619 0.00 0.00 0.00 3.32
2453 2537 1.263484 CTGCTGCTCTGTTCTGTTGTG 59.737 52.381 0.00 0.00 0.00 3.33
2454 2538 1.134431 TGCTGCTCTGTTCTGTTGTGA 60.134 47.619 0.00 0.00 0.00 3.58
2455 2539 2.149578 GCTGCTCTGTTCTGTTGTGAT 58.850 47.619 0.00 0.00 0.00 3.06
2456 2540 3.244181 TGCTGCTCTGTTCTGTTGTGATA 60.244 43.478 0.00 0.00 0.00 2.15
2457 2541 3.937706 GCTGCTCTGTTCTGTTGTGATAT 59.062 43.478 0.00 0.00 0.00 1.63
2458 2542 5.111989 GCTGCTCTGTTCTGTTGTGATATA 58.888 41.667 0.00 0.00 0.00 0.86
2459 2543 5.006165 GCTGCTCTGTTCTGTTGTGATATAC 59.994 44.000 0.00 0.00 0.00 1.47
2460 2544 5.102313 TGCTCTGTTCTGTTGTGATATACG 58.898 41.667 0.00 0.00 0.00 3.06
2461 2545 5.103000 GCTCTGTTCTGTTGTGATATACGT 58.897 41.667 0.00 0.00 0.00 3.57
2462 2546 6.127842 TGCTCTGTTCTGTTGTGATATACGTA 60.128 38.462 0.00 0.00 0.00 3.57
2463 2547 6.415280 GCTCTGTTCTGTTGTGATATACGTAG 59.585 42.308 0.08 0.00 0.00 3.51
2464 2548 7.619964 TCTGTTCTGTTGTGATATACGTAGA 57.380 36.000 0.08 0.00 0.00 2.59
2465 2549 7.470079 TCTGTTCTGTTGTGATATACGTAGAC 58.530 38.462 0.08 0.00 0.00 2.59
2466 2550 7.120138 TCTGTTCTGTTGTGATATACGTAGACA 59.880 37.037 0.08 0.00 0.00 3.41
2467 2551 7.025365 TGTTCTGTTGTGATATACGTAGACAC 58.975 38.462 16.94 16.94 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.111613 TGATTTTTGTGAATGCTTTTCTGAATT 57.888 25.926 0.00 0.00 0.00 2.17
69 70 8.665643 TGATTTTTGTGAATGCTTTTCTGAAT 57.334 26.923 0.00 0.00 0.00 2.57
70 71 8.552865 CATGATTTTTGTGAATGCTTTTCTGAA 58.447 29.630 0.00 0.00 0.00 3.02
71 72 7.927092 TCATGATTTTTGTGAATGCTTTTCTGA 59.073 29.630 0.00 0.00 0.00 3.27
72 73 8.078959 TCATGATTTTTGTGAATGCTTTTCTG 57.921 30.769 0.00 0.00 0.00 3.02
73 74 8.665643 TTCATGATTTTTGTGAATGCTTTTCT 57.334 26.923 0.00 0.00 0.00 2.52
74 75 9.887406 AATTCATGATTTTTGTGAATGCTTTTC 57.113 25.926 0.00 0.00 40.59 2.29
75 76 9.672086 CAATTCATGATTTTTGTGAATGCTTTT 57.328 25.926 0.00 0.00 40.59 2.27
76 77 9.058174 TCAATTCATGATTTTTGTGAATGCTTT 57.942 25.926 0.00 0.00 40.59 3.51
77 78 8.610248 TCAATTCATGATTTTTGTGAATGCTT 57.390 26.923 0.00 0.00 40.59 3.91
78 79 8.610248 TTCAATTCATGATTTTTGTGAATGCT 57.390 26.923 0.00 0.00 40.59 3.79
79 80 9.666626 TTTTCAATTCATGATTTTTGTGAATGC 57.333 25.926 0.00 0.00 40.59 3.56
91 92 9.820725 TGTGAACTTTTCTTTTCAATTCATGAT 57.179 25.926 0.00 0.00 38.03 2.45
92 93 9.650539 TTGTGAACTTTTCTTTTCAATTCATGA 57.349 25.926 0.00 0.00 33.58 3.07
109 110 9.665719 ACAAACTTTTTCCATATTTGTGAACTT 57.334 25.926 0.17 0.00 40.88 2.66
121 122 9.838975 GTTTTCAAATTCACAAACTTTTTCCAT 57.161 25.926 0.00 0.00 0.00 3.41
122 123 8.840321 TGTTTTCAAATTCACAAACTTTTTCCA 58.160 25.926 7.47 0.00 31.59 3.53
123 124 9.670719 TTGTTTTCAAATTCACAAACTTTTTCC 57.329 25.926 7.47 0.00 36.82 3.13
185 186 9.710900 ACTCTTTTCAGTTTTGATGAACTTTTT 57.289 25.926 0.00 0.00 37.76 1.94
186 187 9.710900 AACTCTTTTCAGTTTTGATGAACTTTT 57.289 25.926 0.00 0.00 37.76 2.27
237 238 9.696917 CTAAATGCCAGAACTTTTTCATAAAGT 57.303 29.630 0.00 0.00 41.82 2.66
238 239 8.650714 GCTAAATGCCAGAACTTTTTCATAAAG 58.349 33.333 0.00 0.00 32.81 1.85
239 240 8.147058 TGCTAAATGCCAGAACTTTTTCATAAA 58.853 29.630 0.00 0.00 42.00 1.40
240 241 7.665690 TGCTAAATGCCAGAACTTTTTCATAA 58.334 30.769 0.00 0.00 42.00 1.90
241 242 7.225784 TGCTAAATGCCAGAACTTTTTCATA 57.774 32.000 0.00 0.00 42.00 2.15
242 243 6.100404 TGCTAAATGCCAGAACTTTTTCAT 57.900 33.333 0.00 0.00 42.00 2.57
243 244 5.528043 TGCTAAATGCCAGAACTTTTTCA 57.472 34.783 0.00 0.00 42.00 2.69
244 245 6.843069 TTTGCTAAATGCCAGAACTTTTTC 57.157 33.333 0.00 0.00 42.00 2.29
245 246 7.201723 CCTTTTTGCTAAATGCCAGAACTTTTT 60.202 33.333 0.00 0.00 42.00 1.94
246 247 6.260714 CCTTTTTGCTAAATGCCAGAACTTTT 59.739 34.615 0.00 0.00 42.00 2.27
247 248 5.759763 CCTTTTTGCTAAATGCCAGAACTTT 59.240 36.000 0.00 0.00 42.00 2.66
248 249 5.070313 TCCTTTTTGCTAAATGCCAGAACTT 59.930 36.000 0.00 0.00 42.00 2.66
249 250 4.588528 TCCTTTTTGCTAAATGCCAGAACT 59.411 37.500 0.00 0.00 42.00 3.01
250 251 4.881920 TCCTTTTTGCTAAATGCCAGAAC 58.118 39.130 0.00 0.00 42.00 3.01
251 252 5.543507 TTCCTTTTTGCTAAATGCCAGAA 57.456 34.783 0.00 0.00 42.00 3.02
252 253 5.543507 TTTCCTTTTTGCTAAATGCCAGA 57.456 34.783 0.00 0.00 42.00 3.86
253 254 6.616774 TTTTTCCTTTTTGCTAAATGCCAG 57.383 33.333 0.00 0.00 42.00 4.85
274 275 9.508642 TTTTACTGGAATGGTTTTGTTCTTTTT 57.491 25.926 0.00 0.00 0.00 1.94
275 276 9.508642 TTTTTACTGGAATGGTTTTGTTCTTTT 57.491 25.926 0.00 0.00 0.00 2.27
305 306 4.098196 TGGATCGTTCGGGTTTTTCTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
306 307 3.633065 TGGATCGTTCGGGTTTTTCTTTT 59.367 39.130 0.00 0.00 0.00 2.27
307 308 3.215975 TGGATCGTTCGGGTTTTTCTTT 58.784 40.909 0.00 0.00 0.00 2.52
308 309 2.853705 TGGATCGTTCGGGTTTTTCTT 58.146 42.857 0.00 0.00 0.00 2.52
309 310 2.554370 TGGATCGTTCGGGTTTTTCT 57.446 45.000 0.00 0.00 0.00 2.52
310 311 2.809696 TCTTGGATCGTTCGGGTTTTTC 59.190 45.455 0.00 0.00 0.00 2.29
311 312 2.853705 TCTTGGATCGTTCGGGTTTTT 58.146 42.857 0.00 0.00 0.00 1.94
312 313 2.554370 TCTTGGATCGTTCGGGTTTT 57.446 45.000 0.00 0.00 0.00 2.43
313 314 2.554370 TTCTTGGATCGTTCGGGTTT 57.446 45.000 0.00 0.00 0.00 3.27
314 315 2.554370 TTTCTTGGATCGTTCGGGTT 57.446 45.000 0.00 0.00 0.00 4.11
315 316 2.554370 TTTTCTTGGATCGTTCGGGT 57.446 45.000 0.00 0.00 0.00 5.28
354 355 9.546428 ACTTTTCCTTCAAATCGATGAATTTTT 57.454 25.926 0.00 0.00 38.55 1.94
355 356 9.546428 AACTTTTCCTTCAAATCGATGAATTTT 57.454 25.926 0.00 0.00 38.55 1.82
356 357 9.196552 GAACTTTTCCTTCAAATCGATGAATTT 57.803 29.630 0.00 0.00 38.55 1.82
357 358 8.359642 TGAACTTTTCCTTCAAATCGATGAATT 58.640 29.630 0.00 0.00 38.55 2.17
358 359 7.885297 TGAACTTTTCCTTCAAATCGATGAAT 58.115 30.769 0.00 0.00 38.55 2.57
359 360 7.270757 TGAACTTTTCCTTCAAATCGATGAA 57.729 32.000 0.00 0.00 37.70 2.57
360 361 6.875948 TGAACTTTTCCTTCAAATCGATGA 57.124 33.333 0.00 0.00 0.00 2.92
361 362 7.086376 ACATGAACTTTTCCTTCAAATCGATG 58.914 34.615 0.00 0.00 31.48 3.84
362 363 7.219484 ACATGAACTTTTCCTTCAAATCGAT 57.781 32.000 0.00 0.00 31.48 3.59
363 364 6.633500 ACATGAACTTTTCCTTCAAATCGA 57.367 33.333 0.00 0.00 31.48 3.59
364 365 8.970691 AATACATGAACTTTTCCTTCAAATCG 57.029 30.769 0.00 0.00 31.48 3.34
366 367 8.992073 GCAAATACATGAACTTTTCCTTCAAAT 58.008 29.630 0.00 0.00 31.48 2.32
367 368 7.984050 TGCAAATACATGAACTTTTCCTTCAAA 59.016 29.630 0.00 0.00 31.48 2.69
368 369 7.495901 TGCAAATACATGAACTTTTCCTTCAA 58.504 30.769 0.00 0.00 31.48 2.69
369 370 7.048629 TGCAAATACATGAACTTTTCCTTCA 57.951 32.000 0.00 0.00 32.24 3.02
370 371 7.945033 TTGCAAATACATGAACTTTTCCTTC 57.055 32.000 0.00 0.00 0.00 3.46
371 372 8.907222 ATTTGCAAATACATGAACTTTTCCTT 57.093 26.923 22.95 0.00 0.00 3.36
372 373 9.995003 TTATTTGCAAATACATGAACTTTTCCT 57.005 25.926 27.44 3.59 31.03 3.36
377 378 9.638239 ACGAATTATTTGCAAATACATGAACTT 57.362 25.926 27.44 11.07 31.03 2.66
378 379 9.289303 GACGAATTATTTGCAAATACATGAACT 57.711 29.630 27.44 8.17 31.03 3.01
379 380 8.252454 CGACGAATTATTTGCAAATACATGAAC 58.748 33.333 27.44 17.27 31.03 3.18
380 381 8.178313 TCGACGAATTATTTGCAAATACATGAA 58.822 29.630 27.44 16.93 31.03 2.57
381 382 7.638295 GTCGACGAATTATTTGCAAATACATGA 59.362 33.333 27.44 15.72 31.03 3.07
382 383 7.427895 TGTCGACGAATTATTTGCAAATACATG 59.572 33.333 27.44 19.66 31.03 3.21
383 384 7.468441 TGTCGACGAATTATTTGCAAATACAT 58.532 30.769 27.44 19.79 31.03 2.29
384 385 6.832804 TGTCGACGAATTATTTGCAAATACA 58.167 32.000 27.44 19.32 31.03 2.29
385 386 7.097047 CCATGTCGACGAATTATTTGCAAATAC 60.097 37.037 27.44 17.25 31.03 1.89
386 387 6.909895 CCATGTCGACGAATTATTTGCAAATA 59.090 34.615 24.63 24.63 0.00 1.40
387 388 5.743398 CCATGTCGACGAATTATTTGCAAAT 59.257 36.000 26.72 26.72 0.00 2.32
388 389 5.092105 CCATGTCGACGAATTATTTGCAAA 58.908 37.500 15.44 15.44 0.00 3.68
389 390 4.155099 ACCATGTCGACGAATTATTTGCAA 59.845 37.500 11.62 0.00 0.00 4.08
390 391 3.687212 ACCATGTCGACGAATTATTTGCA 59.313 39.130 11.62 0.00 0.00 4.08
391 392 4.271687 GACCATGTCGACGAATTATTTGC 58.728 43.478 11.62 0.00 0.00 3.68
405 406 9.065871 CATTTTCTATTTTTCTTCGACCATGTC 57.934 33.333 0.00 0.00 0.00 3.06
406 407 8.792633 TCATTTTCTATTTTTCTTCGACCATGT 58.207 29.630 0.00 0.00 0.00 3.21
407 408 9.624697 TTCATTTTCTATTTTTCTTCGACCATG 57.375 29.630 0.00 0.00 0.00 3.66
411 412 9.995379 GCTTTTCATTTTCTATTTTTCTTCGAC 57.005 29.630 0.00 0.00 0.00 4.20
412 413 8.901748 CGCTTTTCATTTTCTATTTTTCTTCGA 58.098 29.630 0.00 0.00 0.00 3.71
413 414 8.901748 TCGCTTTTCATTTTCTATTTTTCTTCG 58.098 29.630 0.00 0.00 0.00 3.79
427 428 8.720562 CCCATTTATCTTTTTCGCTTTTCATTT 58.279 29.630 0.00 0.00 0.00 2.32
428 429 8.093927 TCCCATTTATCTTTTTCGCTTTTCATT 58.906 29.630 0.00 0.00 0.00 2.57
429 430 7.610865 TCCCATTTATCTTTTTCGCTTTTCAT 58.389 30.769 0.00 0.00 0.00 2.57
430 431 6.987386 TCCCATTTATCTTTTTCGCTTTTCA 58.013 32.000 0.00 0.00 0.00 2.69
431 432 7.883229 TTCCCATTTATCTTTTTCGCTTTTC 57.117 32.000 0.00 0.00 0.00 2.29
432 433 8.669946 TTTTCCCATTTATCTTTTTCGCTTTT 57.330 26.923 0.00 0.00 0.00 2.27
433 434 8.147704 TCTTTTCCCATTTATCTTTTTCGCTTT 58.852 29.630 0.00 0.00 0.00 3.51
434 435 7.666623 TCTTTTCCCATTTATCTTTTTCGCTT 58.333 30.769 0.00 0.00 0.00 4.68
435 436 7.227049 TCTTTTCCCATTTATCTTTTTCGCT 57.773 32.000 0.00 0.00 0.00 4.93
436 437 7.883229 TTCTTTTCCCATTTATCTTTTTCGC 57.117 32.000 0.00 0.00 0.00 4.70
440 441 9.573166 CCCTTTTTCTTTTCCCATTTATCTTTT 57.427 29.630 0.00 0.00 0.00 2.27
441 442 8.163408 CCCCTTTTTCTTTTCCCATTTATCTTT 58.837 33.333 0.00 0.00 0.00 2.52
442 443 7.257016 CCCCCTTTTTCTTTTCCCATTTATCTT 60.257 37.037 0.00 0.00 0.00 2.40
443 444 6.215431 CCCCCTTTTTCTTTTCCCATTTATCT 59.785 38.462 0.00 0.00 0.00 1.98
444 445 6.214615 TCCCCCTTTTTCTTTTCCCATTTATC 59.785 38.462 0.00 0.00 0.00 1.75
445 446 6.094991 TCCCCCTTTTTCTTTTCCCATTTAT 58.905 36.000 0.00 0.00 0.00 1.40
446 447 5.477913 TCCCCCTTTTTCTTTTCCCATTTA 58.522 37.500 0.00 0.00 0.00 1.40
447 448 4.311613 TCCCCCTTTTTCTTTTCCCATTT 58.688 39.130 0.00 0.00 0.00 2.32
448 449 3.948126 TCCCCCTTTTTCTTTTCCCATT 58.052 40.909 0.00 0.00 0.00 3.16
449 450 3.646867 TCCCCCTTTTTCTTTTCCCAT 57.353 42.857 0.00 0.00 0.00 4.00
450 451 3.423058 TTCCCCCTTTTTCTTTTCCCA 57.577 42.857 0.00 0.00 0.00 4.37
451 452 4.781775 TTTTCCCCCTTTTTCTTTTCCC 57.218 40.909 0.00 0.00 0.00 3.97
452 453 8.754991 TTTTATTTTCCCCCTTTTTCTTTTCC 57.245 30.769 0.00 0.00 0.00 3.13
453 454 9.621629 TCTTTTATTTTCCCCCTTTTTCTTTTC 57.378 29.630 0.00 0.00 0.00 2.29
454 455 9.983024 TTCTTTTATTTTCCCCCTTTTTCTTTT 57.017 25.926 0.00 0.00 0.00 2.27
456 457 9.793259 GATTCTTTTATTTTCCCCCTTTTTCTT 57.207 29.630 0.00 0.00 0.00 2.52
457 458 8.944138 TGATTCTTTTATTTTCCCCCTTTTTCT 58.056 29.630 0.00 0.00 0.00 2.52
458 459 9.567776 TTGATTCTTTTATTTTCCCCCTTTTTC 57.432 29.630 0.00 0.00 0.00 2.29
459 460 9.928618 TTTGATTCTTTTATTTTCCCCCTTTTT 57.071 25.926 0.00 0.00 0.00 1.94
460 461 9.573166 CTTTGATTCTTTTATTTTCCCCCTTTT 57.427 29.630 0.00 0.00 0.00 2.27
461 462 8.944138 TCTTTGATTCTTTTATTTTCCCCCTTT 58.056 29.630 0.00 0.00 0.00 3.11
462 463 8.504811 TCTTTGATTCTTTTATTTTCCCCCTT 57.495 30.769 0.00 0.00 0.00 3.95
463 464 8.685257 ATCTTTGATTCTTTTATTTTCCCCCT 57.315 30.769 0.00 0.00 0.00 4.79
488 489 9.112725 GGTTCTTGTAACTTACAACCTTTTCTA 57.887 33.333 9.86 0.00 43.23 2.10
489 490 7.832685 AGGTTCTTGTAACTTACAACCTTTTCT 59.167 33.333 14.40 5.45 42.03 2.52
490 491 7.993101 AGGTTCTTGTAACTTACAACCTTTTC 58.007 34.615 14.40 3.84 42.03 2.29
491 492 7.949690 AGGTTCTTGTAACTTACAACCTTTT 57.050 32.000 14.40 0.00 42.03 2.27
492 493 8.270030 AGTAGGTTCTTGTAACTTACAACCTTT 58.730 33.333 21.22 12.17 42.03 3.11
493 494 7.799081 AGTAGGTTCTTGTAACTTACAACCTT 58.201 34.615 21.22 8.48 42.03 3.50
494 495 7.070322 TGAGTAGGTTCTTGTAACTTACAACCT 59.930 37.037 20.38 20.38 44.97 3.50
495 496 7.212274 TGAGTAGGTTCTTGTAACTTACAACC 58.788 38.462 9.86 10.63 43.23 3.77
496 497 8.828688 ATGAGTAGGTTCTTGTAACTTACAAC 57.171 34.615 9.86 2.72 43.23 3.32
497 498 9.268268 CAATGAGTAGGTTCTTGTAACTTACAA 57.732 33.333 12.75 12.75 45.66 2.41
498 499 7.876068 CCAATGAGTAGGTTCTTGTAACTTACA 59.124 37.037 11.25 0.00 35.82 2.41
499 500 7.148457 GCCAATGAGTAGGTTCTTGTAACTTAC 60.148 40.741 2.88 2.88 34.24 2.34
500 501 6.877322 GCCAATGAGTAGGTTCTTGTAACTTA 59.123 38.462 0.00 0.00 0.00 2.24
501 502 5.705905 GCCAATGAGTAGGTTCTTGTAACTT 59.294 40.000 0.00 0.00 0.00 2.66
502 503 5.246307 GCCAATGAGTAGGTTCTTGTAACT 58.754 41.667 0.00 0.00 0.00 2.24
503 504 4.092968 CGCCAATGAGTAGGTTCTTGTAAC 59.907 45.833 0.00 0.00 0.00 2.50
504 505 4.250464 CGCCAATGAGTAGGTTCTTGTAA 58.750 43.478 0.00 0.00 0.00 2.41
505 506 3.369052 CCGCCAATGAGTAGGTTCTTGTA 60.369 47.826 0.00 0.00 0.00 2.41
506 507 2.615493 CCGCCAATGAGTAGGTTCTTGT 60.615 50.000 0.00 0.00 0.00 3.16
507 508 2.009774 CCGCCAATGAGTAGGTTCTTG 58.990 52.381 0.00 0.00 0.00 3.02
508 509 1.065418 CCCGCCAATGAGTAGGTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
509 510 0.541863 CCCGCCAATGAGTAGGTTCT 59.458 55.000 0.00 0.00 0.00 3.01
510 511 0.463833 CCCCGCCAATGAGTAGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
511 512 1.205460 ACCCCGCCAATGAGTAGGTT 61.205 55.000 0.00 0.00 0.00 3.50
512 513 1.615424 ACCCCGCCAATGAGTAGGT 60.615 57.895 0.00 0.00 0.00 3.08
513 514 1.153168 CACCCCGCCAATGAGTAGG 60.153 63.158 0.00 0.00 0.00 3.18
514 515 1.153168 CCACCCCGCCAATGAGTAG 60.153 63.158 0.00 0.00 0.00 2.57
515 516 1.493854 AACCACCCCGCCAATGAGTA 61.494 55.000 0.00 0.00 0.00 2.59
516 517 1.493854 TAACCACCCCGCCAATGAGT 61.494 55.000 0.00 0.00 0.00 3.41
517 518 1.029947 GTAACCACCCCGCCAATGAG 61.030 60.000 0.00 0.00 0.00 2.90
518 519 1.001887 GTAACCACCCCGCCAATGA 60.002 57.895 0.00 0.00 0.00 2.57
519 520 1.303724 TGTAACCACCCCGCCAATG 60.304 57.895 0.00 0.00 0.00 2.82
520 521 1.303806 GTGTAACCACCCCGCCAAT 60.304 57.895 0.00 0.00 35.44 3.16
521 522 2.113562 GTGTAACCACCCCGCCAA 59.886 61.111 0.00 0.00 35.44 4.52
522 523 4.317444 CGTGTAACCACCCCGCCA 62.317 66.667 0.00 0.00 38.41 5.69
523 524 3.945304 CTCGTGTAACCACCCCGCC 62.945 68.421 0.00 0.00 38.41 6.13
524 525 2.433664 CTCGTGTAACCACCCCGC 60.434 66.667 0.00 0.00 38.41 6.13
525 526 2.433664 GCTCGTGTAACCACCCCG 60.434 66.667 0.00 0.00 38.41 5.73
526 527 0.538118 TATGCTCGTGTAACCACCCC 59.462 55.000 0.00 0.00 38.41 4.95
527 528 2.480845 GATATGCTCGTGTAACCACCC 58.519 52.381 0.00 0.00 38.41 4.61
528 529 2.124903 CGATATGCTCGTGTAACCACC 58.875 52.381 0.00 0.00 42.56 4.61
539 540 1.480137 CCCTCCCTCATCGATATGCTC 59.520 57.143 0.00 0.00 32.76 4.26
540 541 1.566211 CCCTCCCTCATCGATATGCT 58.434 55.000 0.00 0.00 32.76 3.79
541 542 0.107945 GCCCTCCCTCATCGATATGC 60.108 60.000 0.00 0.00 32.76 3.14
542 543 0.174389 CGCCCTCCCTCATCGATATG 59.826 60.000 0.00 0.00 0.00 1.78
543 544 1.608717 GCGCCCTCCCTCATCGATAT 61.609 60.000 0.00 0.00 0.00 1.63
544 545 2.276116 GCGCCCTCCCTCATCGATA 61.276 63.158 0.00 0.00 0.00 2.92
545 546 3.620785 GCGCCCTCCCTCATCGAT 61.621 66.667 0.00 0.00 0.00 3.59
546 547 4.841617 AGCGCCCTCCCTCATCGA 62.842 66.667 2.29 0.00 0.00 3.59
547 548 4.598894 CAGCGCCCTCCCTCATCG 62.599 72.222 2.29 0.00 0.00 3.84
548 549 4.247380 CCAGCGCCCTCCCTCATC 62.247 72.222 2.29 0.00 0.00 2.92
553 554 4.785453 CTTCACCAGCGCCCTCCC 62.785 72.222 2.29 0.00 0.00 4.30
561 562 1.444895 CATTTGGCGCTTCACCAGC 60.445 57.895 7.64 0.00 46.31 4.85
562 563 1.213537 CCATTTGGCGCTTCACCAG 59.786 57.895 7.64 0.00 38.73 4.00
563 564 2.274645 CCCATTTGGCGCTTCACCA 61.275 57.895 7.64 0.00 34.65 4.17
564 565 1.531739 TTCCCATTTGGCGCTTCACC 61.532 55.000 7.64 0.00 0.00 4.02
565 566 0.109132 CTTCCCATTTGGCGCTTCAC 60.109 55.000 7.64 0.00 0.00 3.18
566 567 1.876497 GCTTCCCATTTGGCGCTTCA 61.876 55.000 7.64 0.00 0.00 3.02
567 568 1.153765 GCTTCCCATTTGGCGCTTC 60.154 57.895 7.64 0.00 0.00 3.86
568 569 2.973082 GCTTCCCATTTGGCGCTT 59.027 55.556 7.64 0.00 0.00 4.68
569 570 3.443045 CGCTTCCCATTTGGCGCT 61.443 61.111 7.64 0.00 41.08 5.92
580 581 2.280865 CCTAATCCGGGCGCTTCC 60.281 66.667 7.64 0.00 0.00 3.46
581 582 1.301009 CTCCTAATCCGGGCGCTTC 60.301 63.158 7.64 0.00 0.00 3.86
582 583 2.808206 CCTCCTAATCCGGGCGCTT 61.808 63.158 7.64 0.00 0.00 4.68
583 584 3.234730 CCTCCTAATCCGGGCGCT 61.235 66.667 7.64 0.00 0.00 5.92
584 585 3.227792 CTCCTCCTAATCCGGGCGC 62.228 68.421 0.00 0.00 0.00 6.53
585 586 3.052081 CTCCTCCTAATCCGGGCG 58.948 66.667 0.00 0.00 0.00 6.13
586 587 1.822114 GAGCTCCTCCTAATCCGGGC 61.822 65.000 0.87 0.00 0.00 6.13
587 588 1.188871 GGAGCTCCTCCTAATCCGGG 61.189 65.000 26.25 0.00 46.41 5.73
588 589 2.356992 GGAGCTCCTCCTAATCCGG 58.643 63.158 26.25 0.00 46.41 5.14
597 598 2.579738 GGAACACGGGAGCTCCTC 59.420 66.667 31.36 20.12 35.95 3.71
628 629 6.512903 GCGGGCCTAATAACTTCATTTCTTAC 60.513 42.308 0.84 0.00 0.00 2.34
641 642 3.006112 TGAAATGTGCGGGCCTAATAA 57.994 42.857 0.84 0.00 0.00 1.40
687 689 1.098050 GGCTTTGGTCTGCAGGTATG 58.902 55.000 15.13 1.12 0.00 2.39
688 690 0.034089 GGGCTTTGGTCTGCAGGTAT 60.034 55.000 15.13 0.00 0.00 2.73
700 702 2.594303 TCGGTGCACTGGGCTTTG 60.594 61.111 25.15 1.76 45.15 2.77
761 764 1.083144 GGCGATACGTACGAGGTCG 60.083 63.158 24.41 24.99 46.33 4.79
978 985 1.539496 CGAAGGAAGGAACGTGTGGAA 60.539 52.381 0.00 0.00 0.00 3.53
1081 1091 4.363990 CTGCTCGTGGTGGTCGCT 62.364 66.667 0.00 0.00 0.00 4.93
1227 1237 1.296715 GAAGATGACCAGCACGGGT 59.703 57.895 0.00 0.00 46.02 5.28
1513 1523 1.004610 CGTTCATCATCATCCACGCAC 60.005 52.381 0.00 0.00 0.00 5.34
1529 1539 2.403037 GCAACCGTACGCTATATCGTTC 59.597 50.000 10.49 1.32 43.15 3.95
1748 1761 1.296392 CGGGCAGACATCCACAAGA 59.704 57.895 0.00 0.00 0.00 3.02
1763 1776 6.511416 TGGCAATTTATTCATCATAAACGGG 58.489 36.000 0.00 0.00 39.66 5.28
1764 1777 7.706179 ACTTGGCAATTTATTCATCATAAACGG 59.294 33.333 0.00 0.00 39.66 4.44
1832 1845 1.347320 GCAAGCTGCATTTCAGAAGC 58.653 50.000 1.02 0.00 45.72 3.86
1846 1859 2.495669 ACTCCTAGTCTCTTCTGCAAGC 59.504 50.000 0.00 0.00 0.00 4.01
1865 1886 1.296715 GGTTCAGATCGTGCCCACT 59.703 57.895 0.00 0.00 0.00 4.00
1866 1887 1.745489 GGGTTCAGATCGTGCCCAC 60.745 63.158 11.18 0.00 39.13 4.61
1867 1888 2.184020 CTGGGTTCAGATCGTGCCCA 62.184 60.000 15.88 15.88 46.14 5.36
1868 1889 1.450312 CTGGGTTCAGATCGTGCCC 60.450 63.158 9.71 9.71 43.49 5.36
1869 1890 1.450312 CCTGGGTTCAGATCGTGCC 60.450 63.158 0.00 0.00 43.49 5.01
1871 1892 1.221840 CCCCTGGGTTCAGATCGTG 59.778 63.158 12.71 0.00 43.49 4.35
1872 1893 2.670148 GCCCCTGGGTTCAGATCGT 61.670 63.158 12.71 0.00 43.49 3.73
1873 1894 1.987807 ATGCCCCTGGGTTCAGATCG 61.988 60.000 12.71 0.00 43.49 3.69
1874 1895 0.179006 GATGCCCCTGGGTTCAGATC 60.179 60.000 12.71 1.50 43.49 2.75
1875 1896 0.625683 AGATGCCCCTGGGTTCAGAT 60.626 55.000 12.71 0.00 43.49 2.90
1877 1898 1.225704 GAGATGCCCCTGGGTTCAG 59.774 63.158 12.71 0.00 40.59 3.02
1879 1900 0.394899 CAAGAGATGCCCCTGGGTTC 60.395 60.000 12.71 5.75 37.65 3.62
1881 1902 1.542375 ACAAGAGATGCCCCTGGGT 60.542 57.895 12.71 0.00 37.65 4.51
1882 1903 1.077212 CACAAGAGATGCCCCTGGG 60.077 63.158 5.50 5.50 38.57 4.45
1884 1905 1.815003 GAAACACAAGAGATGCCCCTG 59.185 52.381 0.00 0.00 0.00 4.45
1885 1906 1.707427 AGAAACACAAGAGATGCCCCT 59.293 47.619 0.00 0.00 0.00 4.79
1887 1908 3.064900 AGAGAAACACAAGAGATGCCC 57.935 47.619 0.00 0.00 0.00 5.36
1888 1909 4.569943 TGTAGAGAAACACAAGAGATGCC 58.430 43.478 0.00 0.00 0.00 4.40
1889 1910 9.703892 ATATATGTAGAGAAACACAAGAGATGC 57.296 33.333 0.00 0.00 30.75 3.91
1928 1997 9.987272 ACTTGGTAAGTTCGTAGTAAGTTAATT 57.013 29.630 0.00 0.00 39.04 1.40
1929 1998 9.415544 CACTTGGTAAGTTCGTAGTAAGTTAAT 57.584 33.333 0.00 0.00 40.46 1.40
1931 2000 8.076178 GTCACTTGGTAAGTTCGTAGTAAGTTA 58.924 37.037 0.00 0.00 40.46 2.24
1933 2002 6.264067 AGTCACTTGGTAAGTTCGTAGTAAGT 59.736 38.462 0.00 0.00 40.46 2.24
1934 2003 6.675987 AGTCACTTGGTAAGTTCGTAGTAAG 58.324 40.000 0.00 0.00 40.46 2.34
1935 2004 6.639632 AGTCACTTGGTAAGTTCGTAGTAA 57.360 37.500 0.00 0.00 40.46 2.24
1936 2005 7.148188 CCATAGTCACTTGGTAAGTTCGTAGTA 60.148 40.741 0.00 0.00 40.46 1.82
1937 2006 6.349944 CCATAGTCACTTGGTAAGTTCGTAGT 60.350 42.308 0.00 0.00 40.46 2.73
1938 2007 6.034591 CCATAGTCACTTGGTAAGTTCGTAG 58.965 44.000 0.00 0.00 40.46 3.51
1939 2008 5.477984 ACCATAGTCACTTGGTAAGTTCGTA 59.522 40.000 9.25 0.00 44.36 3.43
1940 2009 4.282703 ACCATAGTCACTTGGTAAGTTCGT 59.717 41.667 9.25 0.00 44.36 3.85
1941 2010 4.817517 ACCATAGTCACTTGGTAAGTTCG 58.182 43.478 9.25 0.00 44.36 3.95
1953 2022 5.237344 GGATCAATGCTTGTACCATAGTCAC 59.763 44.000 0.00 0.00 0.00 3.67
1966 2035 3.228453 CTTGCATAGGGGATCAATGCTT 58.772 45.455 17.15 0.00 44.96 3.91
1973 2042 2.350522 CGTATGCTTGCATAGGGGATC 58.649 52.381 20.88 7.62 0.00 3.36
1981 2050 5.323371 ACAAATTAACCGTATGCTTGCAT 57.677 34.783 12.88 12.88 0.00 3.96
2024 2094 6.653020 TGCACTACATTATTGTCCATCTCTT 58.347 36.000 0.00 0.00 37.28 2.85
2044 2114 7.166804 ACGTTTCATAAAAACACTATGTTGCAC 59.833 33.333 0.00 0.00 40.14 4.57
2060 2130 8.164058 GTTTGTTCACTTCAAACGTTTCATAA 57.836 30.769 11.37 5.28 42.84 1.90
2061 2131 7.728580 GTTTGTTCACTTCAAACGTTTCATA 57.271 32.000 11.37 0.00 42.84 2.15
2083 2166 7.686438 AAAGAAGGAAAAACATTGCTTTGTT 57.314 28.000 0.00 0.00 41.49 2.83
2095 2178 9.382275 CTTCATGGAAAAGAAAAGAAGGAAAAA 57.618 29.630 0.00 0.00 0.00 1.94
2157 2241 0.804989 GAAACAGCATCACCCCGAAG 59.195 55.000 0.00 0.00 0.00 3.79
2163 2247 1.909700 TTCCCTGAAACAGCATCACC 58.090 50.000 0.00 0.00 0.00 4.02
2169 2253 1.815003 CCAGTCATTCCCTGAAACAGC 59.185 52.381 0.00 0.00 35.07 4.40
2181 2265 7.170965 ACAGAACAACAGAATATCCAGTCATT 58.829 34.615 0.00 0.00 0.00 2.57
2189 2273 6.481954 AACGGAACAGAACAACAGAATATC 57.518 37.500 0.00 0.00 0.00 1.63
2197 2281 6.735063 CGTAAATCATAACGGAACAGAACAAC 59.265 38.462 0.00 0.00 35.51 3.32
2209 2293 1.395080 GCGCGTCCGTAAATCATAACG 60.395 52.381 8.43 0.00 38.80 3.18
2213 2297 2.235016 CCGCGCGTCCGTAAATCAT 61.235 57.895 29.95 0.00 36.67 2.45
2227 2311 0.810031 CTCCCCATCTACAAACCGCG 60.810 60.000 0.00 0.00 0.00 6.46
2303 2387 7.232330 AGAGATCTTCCTTTCAAAAAGGGAAAG 59.768 37.037 16.36 13.45 46.51 2.62
2304 2388 7.069344 AGAGATCTTCCTTTCAAAAAGGGAAA 58.931 34.615 16.36 5.76 46.51 3.13
2305 2389 6.614657 AGAGATCTTCCTTTCAAAAAGGGAA 58.385 36.000 16.36 8.54 45.50 3.97
2306 2390 6.206180 AGAGATCTTCCTTTCAAAAAGGGA 57.794 37.500 16.36 8.66 38.77 4.20
2307 2391 7.171653 ACTAGAGATCTTCCTTTCAAAAAGGG 58.828 38.462 16.36 4.08 37.99 3.95
2308 2392 8.100164 AGACTAGAGATCTTCCTTTCAAAAAGG 58.900 37.037 11.46 11.46 38.78 3.11
2311 2395 9.535170 TCTAGACTAGAGATCTTCCTTTCAAAA 57.465 33.333 8.17 0.00 0.00 2.44
2312 2396 9.535170 TTCTAGACTAGAGATCTTCCTTTCAAA 57.465 33.333 11.94 0.00 35.96 2.69
2313 2397 9.535170 TTTCTAGACTAGAGATCTTCCTTTCAA 57.465 33.333 11.94 0.00 35.96 2.69
2314 2398 9.184523 CTTTCTAGACTAGAGATCTTCCTTTCA 57.815 37.037 11.94 0.00 35.96 2.69
2315 2399 8.630037 CCTTTCTAGACTAGAGATCTTCCTTTC 58.370 40.741 11.94 0.00 35.96 2.62
2316 2400 8.340757 TCCTTTCTAGACTAGAGATCTTCCTTT 58.659 37.037 11.94 0.00 35.96 3.11
2317 2401 7.878495 TCCTTTCTAGACTAGAGATCTTCCTT 58.122 38.462 11.94 0.00 35.96 3.36
2318 2402 7.460214 TCCTTTCTAGACTAGAGATCTTCCT 57.540 40.000 11.94 0.00 35.96 3.36
2319 2403 8.528044 TTTCCTTTCTAGACTAGAGATCTTCC 57.472 38.462 11.94 0.00 35.96 3.46
2320 2404 9.797556 GTTTTCCTTTCTAGACTAGAGATCTTC 57.202 37.037 11.94 0.00 35.96 2.87
2321 2405 9.315363 TGTTTTCCTTTCTAGACTAGAGATCTT 57.685 33.333 11.94 0.00 35.96 2.40
2322 2406 8.887264 TGTTTTCCTTTCTAGACTAGAGATCT 57.113 34.615 11.94 0.00 35.96 2.75
2323 2407 9.930693 TTTGTTTTCCTTTCTAGACTAGAGATC 57.069 33.333 11.94 0.00 35.96 2.75
2324 2408 9.936759 CTTTGTTTTCCTTTCTAGACTAGAGAT 57.063 33.333 11.94 0.00 35.96 2.75
2325 2409 8.368668 CCTTTGTTTTCCTTTCTAGACTAGAGA 58.631 37.037 11.94 7.36 35.96 3.10
2326 2410 8.151596 ACCTTTGTTTTCCTTTCTAGACTAGAG 58.848 37.037 11.94 2.47 35.96 2.43
2327 2411 7.931948 CACCTTTGTTTTCCTTTCTAGACTAGA 59.068 37.037 8.17 8.17 0.00 2.43
2328 2412 7.715686 ACACCTTTGTTTTCCTTTCTAGACTAG 59.284 37.037 2.81 2.81 28.43 2.57
2329 2413 7.571025 ACACCTTTGTTTTCCTTTCTAGACTA 58.429 34.615 0.00 0.00 28.43 2.59
2330 2414 6.424032 ACACCTTTGTTTTCCTTTCTAGACT 58.576 36.000 0.00 0.00 28.43 3.24
2331 2415 6.694877 ACACCTTTGTTTTCCTTTCTAGAC 57.305 37.500 0.00 0.00 28.43 2.59
2346 2430 0.523072 CATCGCCTGGAACACCTTTG 59.477 55.000 0.00 0.00 0.00 2.77
2356 2440 0.463295 AGCATTCAGTCATCGCCTGG 60.463 55.000 0.00 0.00 0.00 4.45
2364 2448 1.742880 GCGGCAGAGCATTCAGTCA 60.743 57.895 0.00 0.00 37.05 3.41
2373 2457 2.099431 CAGAACAGAGCGGCAGAGC 61.099 63.158 1.45 0.00 37.41 4.09
2380 2464 3.549471 GTGTATCACATCAGAACAGAGCG 59.451 47.826 0.00 0.00 34.08 5.03
2407 2491 3.312973 TCGTAAATCACAACAAACCGCTT 59.687 39.130 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.