Multiple sequence alignment - TraesCS2D01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G414400 chr2D 100.000 2311 0 0 1 2311 528535388 528533078 0.000000e+00 4268
1 TraesCS2D01G414400 chr2D 91.978 2356 88 30 5 2311 649842767 649840464 0.000000e+00 3210
2 TraesCS2D01G414400 chr2D 91.211 1718 104 28 1 1701 49728570 49730257 0.000000e+00 2292
3 TraesCS2D01G414400 chr2D 85.863 771 34 15 1582 2311 49683387 49684123 0.000000e+00 750
4 TraesCS2D01G414400 chr2D 85.714 770 36 17 1582 2311 49730176 49730911 0.000000e+00 745
5 TraesCS2D01G414400 chr2D 85.252 773 39 23 1582 2311 372156532 372155792 0.000000e+00 726
6 TraesCS2D01G414400 chr2D 84.703 353 25 13 1886 2230 191512287 191512618 2.210000e-85 326
7 TraesCS2D01G414400 chr5A 91.948 2372 89 31 1 2311 38695587 38693257 0.000000e+00 3229
8 TraesCS2D01G414400 chr5A 90.851 1716 114 29 1 1701 437513260 437511573 0.000000e+00 2259
9 TraesCS2D01G414400 chr3A 89.243 2352 139 41 1 2311 111291850 111289572 0.000000e+00 2837
10 TraesCS2D01G414400 chr3A 84.615 351 26 15 1887 2230 99976755 99977084 7.960000e-85 324
11 TraesCS2D01G414400 chr5D 90.315 2189 130 47 1 2149 217939325 217937179 0.000000e+00 2793
12 TraesCS2D01G414400 chr5D 92.532 1714 99 21 1 1701 219867442 219869139 0.000000e+00 2429
13 TraesCS2D01G414400 chr5D 91.528 1263 73 20 1 1254 530727236 530725999 0.000000e+00 1709
14 TraesCS2D01G414400 chr5D 93.369 739 27 10 1582 2311 491736167 491735442 0.000000e+00 1074
15 TraesCS2D01G414400 chr5D 86.059 373 25 9 1582 1932 219869058 219869425 2.170000e-100 375
16 TraesCS2D01G414400 chr5D 85.632 348 16 7 1886 2230 361380479 361380795 3.680000e-88 335
17 TraesCS2D01G414400 chr5D 84.195 348 21 11 1886 2230 125553496 125553180 8.020000e-80 307
18 TraesCS2D01G414400 chr5D 84.241 349 19 9 1886 2230 161540451 161540135 8.020000e-80 307
19 TraesCS2D01G414400 chr5D 84.024 338 12 12 1988 2311 219869424 219869733 1.040000e-73 287
20 TraesCS2D01G414400 chr5D 86.301 146 3 2 2179 2311 361380787 361380928 2.390000e-30 143
21 TraesCS2D01G414400 chr5D 85.616 146 4 8 2179 2311 530655560 530655419 1.110000e-28 137
22 TraesCS2D01G414400 chr7D 89.092 2301 148 37 1 2230 174748731 174750999 0.000000e+00 2763
23 TraesCS2D01G414400 chr7D 93.329 1724 83 13 1 1701 574344826 574343112 0.000000e+00 2518
24 TraesCS2D01G414400 chr7D 87.234 1927 157 44 1 1874 475598009 475596119 0.000000e+00 2113
25 TraesCS2D01G414400 chr7D 87.685 877 79 17 1 857 244690079 244690946 0.000000e+00 994
26 TraesCS2D01G414400 chr7D 87.122 761 33 13 1582 2311 574343197 574342471 0.000000e+00 802
27 TraesCS2D01G414400 chr7D 85.398 767 39 19 1582 2311 379137042 379136312 0.000000e+00 728
28 TraesCS2D01G414400 chr7D 85.190 763 36 17 1589 2311 255734541 255735266 0.000000e+00 712
29 TraesCS2D01G414400 chr7D 83.799 358 24 15 1886 2230 257475594 257475930 2.230000e-80 309
30 TraesCS2D01G414400 chr7D 84.195 348 21 11 1886 2230 485588839 485588523 8.020000e-80 307
31 TraesCS2D01G414400 chr7D 83.621 348 17 13 1886 2230 29349308 29349618 8.080000e-75 291
32 TraesCS2D01G414400 chr3D 94.461 1715 73 9 1 1701 272546617 272548323 0.000000e+00 2621
33 TraesCS2D01G414400 chr3D 93.341 1727 72 21 1 1701 609657993 609659702 0.000000e+00 2512
34 TraesCS2D01G414400 chr3D 91.271 527 30 5 1612 2134 272548271 272548785 0.000000e+00 704
35 TraesCS2D01G414400 chr3D 85.039 762 35 18 1589 2311 43174558 43173837 0.000000e+00 702
36 TraesCS2D01G414400 chr3D 84.419 353 24 15 1886 2230 130608715 130608386 3.710000e-83 318
37 TraesCS2D01G414400 chr3D 84.483 348 20 8 1886 2230 377155336 377155020 1.720000e-81 313
38 TraesCS2D01G414400 chr1A 88.148 1949 135 33 1 1906 494617728 494615833 0.000000e+00 2231
39 TraesCS2D01G414400 chr1A 83.143 350 21 15 1886 2230 338112146 338111830 3.760000e-73 285
40 TraesCS2D01G414400 chr1A 86.301 146 3 2 2179 2311 415170827 415170968 2.390000e-30 143
41 TraesCS2D01G414400 chr2A 90.434 1474 113 19 19 1475 346374821 346376283 0.000000e+00 1916
42 TraesCS2D01G414400 chr6D 91.765 1105 46 13 1236 2311 126949177 126948089 0.000000e+00 1495
43 TraesCS2D01G414400 chr6D 90.040 753 31 17 1591 2311 465237858 465238598 0.000000e+00 935
44 TraesCS2D01G414400 chr6D 85.071 777 34 19 1582 2311 359517222 359517963 0.000000e+00 717
45 TraesCS2D01G414400 chr6D 87.879 330 23 4 1582 1895 56950006 56949678 2.800000e-99 372
46 TraesCS2D01G414400 chr6D 84.483 348 19 11 1886 2230 37480868 37481183 6.200000e-81 311
47 TraesCS2D01G414400 chr6D 84.195 348 19 13 1886 2230 11449418 11449104 2.880000e-79 305
48 TraesCS2D01G414400 chr6D 83.954 349 19 8 1886 2230 56949643 56949328 1.340000e-77 300
49 TraesCS2D01G414400 chr6D 83.908 348 19 13 1886 2230 9801892 9801579 4.830000e-77 298
50 TraesCS2D01G414400 chr6D 82.997 347 20 12 1886 2230 139951028 139951337 6.290000e-71 278
51 TraesCS2D01G414400 chr6D 82.184 348 16 10 1886 2230 112659671 112659367 8.190000e-65 257
52 TraesCS2D01G414400 chr6D 80.780 359 21 13 1886 2229 302809865 302810190 1.070000e-58 237
53 TraesCS2D01G414400 chr6D 84.305 223 12 8 1582 1782 11449768 11449547 1.810000e-46 196
54 TraesCS2D01G414400 chr6D 81.588 277 16 13 1958 2230 48972087 48972332 1.810000e-46 196
55 TraesCS2D01G414400 chr6D 78.161 348 40 18 1886 2230 344611622 344611308 3.030000e-44 189
56 TraesCS2D01G414400 chr6D 86.932 176 13 4 1907 2077 365886595 365886425 3.030000e-44 189
57 TraesCS2D01G414400 chr6D 88.199 161 2 2 2164 2311 214765861 214765705 2.360000e-40 176
58 TraesCS2D01G414400 chr6D 87.333 150 6 6 2081 2230 365886371 365886235 2.380000e-35 159
59 TraesCS2D01G414400 chr6D 86.301 146 3 4 2179 2311 139951329 139951470 2.390000e-30 143
60 TraesCS2D01G414400 chr6D 85.616 146 4 2 2179 2311 56949336 56949195 1.110000e-28 137
61 TraesCS2D01G414400 chr6D 93.333 90 2 2 2222 2311 49001691 49001776 1.860000e-26 130
62 TraesCS2D01G414400 chr6D 93.333 90 2 3 2222 2311 302810241 302810326 1.860000e-26 130
63 TraesCS2D01G414400 chr6D 84.247 146 6 3 2179 2311 9801587 9801446 2.410000e-25 126
64 TraesCS2D01G414400 chr4D 86.579 1453 78 35 930 2311 348275274 348273868 0.000000e+00 1495
65 TraesCS2D01G414400 chr4D 87.729 872 81 17 1 857 63684078 63683218 0.000000e+00 994
66 TraesCS2D01G414400 chr4D 84.731 334 28 14 1582 1896 450003728 450004057 1.720000e-81 313
67 TraesCS2D01G414400 chr4D 84.431 334 20 6 1900 2230 394550181 394550485 1.340000e-77 300
68 TraesCS2D01G414400 chr4D 83.908 348 19 14 1886 2230 53369609 53369922 4.830000e-77 298
69 TraesCS2D01G414400 chr4D 80.802 349 25 13 1904 2230 346547079 346547407 3.840000e-58 235
70 TraesCS2D01G414400 chr4D 80.137 292 25 9 1627 1888 330382398 330382110 1.090000e-43 187
71 TraesCS2D01G414400 chr4D 87.586 145 5 2 2086 2230 330381779 330381648 3.070000e-34 156
72 TraesCS2D01G414400 chr6A 89.970 987 64 18 930 1894 71557440 71556467 0.000000e+00 1242
73 TraesCS2D01G414400 chr6A 87.088 728 33 12 1612 2309 455406742 455407438 0.000000e+00 767
74 TraesCS2D01G414400 chr6A 83.714 350 21 10 1886 2230 71556431 71556113 4.830000e-77 298
75 TraesCS2D01G414400 chr6A 84.431 334 17 8 1900 2230 583338970 583338669 1.740000e-76 296
76 TraesCS2D01G414400 chr6A 83.046 348 22 11 1886 2230 268360009 268360322 4.860000e-72 281
77 TraesCS2D01G414400 chr6A 82.235 349 24 15 1886 2230 152205924 152206238 1.360000e-67 267
78 TraesCS2D01G414400 chr6B 87.260 730 37 14 1609 2311 410257535 410256835 0.000000e+00 782
79 TraesCS2D01G414400 chr4A 84.777 716 60 22 1612 2311 392934456 392933774 0.000000e+00 673
80 TraesCS2D01G414400 chr4B 84.615 364 22 11 1886 2246 12441580 12441912 4.760000e-87 331
81 TraesCS2D01G414400 chr2B 83.908 348 32 13 1886 2230 756274746 756275072 6.200000e-81 311
82 TraesCS2D01G414400 chr1D 81.308 428 23 13 1900 2311 409933992 409933606 6.240000e-76 294
83 TraesCS2D01G414400 chr1D 83.686 331 20 9 1886 2214 50647600 50647898 4.860000e-72 281
84 TraesCS2D01G414400 chr1D 82.471 348 25 12 1886 2230 386743457 386743771 2.930000e-69 272
85 TraesCS2D01G414400 chr1D 87.349 166 13 3 1904 2066 331828025 331828185 1.410000e-42 183
86 TraesCS2D01G414400 chr1D 86.713 143 5 4 2179 2311 50661311 50661449 1.850000e-31 147
87 TraesCS2D01G414400 chr1D 86.301 146 3 3 2179 2311 386743763 386743904 2.390000e-30 143
88 TraesCS2D01G414400 chr1D 84.667 150 10 5 2081 2230 331828238 331828374 1.110000e-28 137
89 TraesCS2D01G414400 chr1D 84.932 146 5 4 2179 2311 250772194 250772335 5.180000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G414400 chr2D 528533078 528535388 2310 True 4268.000000 4268 100.000000 1 2311 1 chr2D.!!$R2 2310
1 TraesCS2D01G414400 chr2D 649840464 649842767 2303 True 3210.000000 3210 91.978000 5 2311 1 chr2D.!!$R3 2306
2 TraesCS2D01G414400 chr2D 49728570 49730911 2341 False 1518.500000 2292 88.462500 1 2311 2 chr2D.!!$F3 2310
3 TraesCS2D01G414400 chr2D 49683387 49684123 736 False 750.000000 750 85.863000 1582 2311 1 chr2D.!!$F1 729
4 TraesCS2D01G414400 chr2D 372155792 372156532 740 True 726.000000 726 85.252000 1582 2311 1 chr2D.!!$R1 729
5 TraesCS2D01G414400 chr5A 38693257 38695587 2330 True 3229.000000 3229 91.948000 1 2311 1 chr5A.!!$R1 2310
6 TraesCS2D01G414400 chr5A 437511573 437513260 1687 True 2259.000000 2259 90.851000 1 1701 1 chr5A.!!$R2 1700
7 TraesCS2D01G414400 chr3A 111289572 111291850 2278 True 2837.000000 2837 89.243000 1 2311 1 chr3A.!!$R1 2310
8 TraesCS2D01G414400 chr5D 217937179 217939325 2146 True 2793.000000 2793 90.315000 1 2149 1 chr5D.!!$R3 2148
9 TraesCS2D01G414400 chr5D 530725999 530727236 1237 True 1709.000000 1709 91.528000 1 1254 1 chr5D.!!$R6 1253
10 TraesCS2D01G414400 chr5D 491735442 491736167 725 True 1074.000000 1074 93.369000 1582 2311 1 chr5D.!!$R4 729
11 TraesCS2D01G414400 chr5D 219867442 219869733 2291 False 1030.333333 2429 87.538333 1 2311 3 chr5D.!!$F1 2310
12 TraesCS2D01G414400 chr7D 174748731 174750999 2268 False 2763.000000 2763 89.092000 1 2230 1 chr7D.!!$F2 2229
13 TraesCS2D01G414400 chr7D 475596119 475598009 1890 True 2113.000000 2113 87.234000 1 1874 1 chr7D.!!$R2 1873
14 TraesCS2D01G414400 chr7D 574342471 574344826 2355 True 1660.000000 2518 90.225500 1 2311 2 chr7D.!!$R4 2310
15 TraesCS2D01G414400 chr7D 244690079 244690946 867 False 994.000000 994 87.685000 1 857 1 chr7D.!!$F3 856
16 TraesCS2D01G414400 chr7D 379136312 379137042 730 True 728.000000 728 85.398000 1582 2311 1 chr7D.!!$R1 729
17 TraesCS2D01G414400 chr7D 255734541 255735266 725 False 712.000000 712 85.190000 1589 2311 1 chr7D.!!$F4 722
18 TraesCS2D01G414400 chr3D 609657993 609659702 1709 False 2512.000000 2512 93.341000 1 1701 1 chr3D.!!$F1 1700
19 TraesCS2D01G414400 chr3D 272546617 272548785 2168 False 1662.500000 2621 92.866000 1 2134 2 chr3D.!!$F2 2133
20 TraesCS2D01G414400 chr3D 43173837 43174558 721 True 702.000000 702 85.039000 1589 2311 1 chr3D.!!$R1 722
21 TraesCS2D01G414400 chr1A 494615833 494617728 1895 True 2231.000000 2231 88.148000 1 1906 1 chr1A.!!$R2 1905
22 TraesCS2D01G414400 chr2A 346374821 346376283 1462 False 1916.000000 1916 90.434000 19 1475 1 chr2A.!!$F1 1456
23 TraesCS2D01G414400 chr6D 126948089 126949177 1088 True 1495.000000 1495 91.765000 1236 2311 1 chr6D.!!$R2 1075
24 TraesCS2D01G414400 chr6D 465237858 465238598 740 False 935.000000 935 90.040000 1591 2311 1 chr6D.!!$F5 720
25 TraesCS2D01G414400 chr6D 359517222 359517963 741 False 717.000000 717 85.071000 1582 2311 1 chr6D.!!$F4 729
26 TraesCS2D01G414400 chr6D 56949195 56950006 811 True 269.666667 372 85.816333 1582 2311 3 chr6D.!!$R7 729
27 TraesCS2D01G414400 chr6D 11449104 11449768 664 True 250.500000 305 84.250000 1582 2230 2 chr6D.!!$R6 648
28 TraesCS2D01G414400 chr4D 348273868 348275274 1406 True 1495.000000 1495 86.579000 930 2311 1 chr4D.!!$R2 1381
29 TraesCS2D01G414400 chr4D 63683218 63684078 860 True 994.000000 994 87.729000 1 857 1 chr4D.!!$R1 856
30 TraesCS2D01G414400 chr6A 71556113 71557440 1327 True 770.000000 1242 86.842000 930 2230 2 chr6A.!!$R2 1300
31 TraesCS2D01G414400 chr6A 455406742 455407438 696 False 767.000000 767 87.088000 1612 2309 1 chr6A.!!$F3 697
32 TraesCS2D01G414400 chr6B 410256835 410257535 700 True 782.000000 782 87.260000 1609 2311 1 chr6B.!!$R1 702
33 TraesCS2D01G414400 chr4A 392933774 392934456 682 True 673.000000 673 84.777000 1612 2311 1 chr4A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 835 1.618837 GATCATACCCTAGCGCCAAGA 59.381 52.381 2.29 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2161 5.065346 GTGCACTATTTTCTAGGCCTCTTTC 59.935 44.0 9.68 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.592778 ACAGCCCCATTTGTAATCAAGTTT 59.407 37.500 0.00 0.00 34.88 2.66
541 633 8.931385 TGTCCGTATACCAAGTTTAGTATTTC 57.069 34.615 0.00 0.00 31.73 2.17
581 675 5.794945 TCTTATAAAACGACGAACGACGAAT 59.205 36.000 22.29 13.02 45.77 3.34
590 684 4.201419 CGACGAACGACGAATGTTTCATAA 60.201 41.667 12.65 0.00 45.77 1.90
730 835 1.618837 GATCATACCCTAGCGCCAAGA 59.381 52.381 2.29 0.00 0.00 3.02
891 1011 2.038863 TGTGCCTCCCCTTTCTTCTA 57.961 50.000 0.00 0.00 0.00 2.10
987 1141 1.973515 TCTGCTTCTTCTTCTCTGGCA 59.026 47.619 0.00 0.00 0.00 4.92
993 1147 4.320129 GCTTCTTCTTCTCTGGCAAGTTTC 60.320 45.833 0.00 0.00 0.00 2.78
1015 1169 2.885266 GGTGATATGTCGAGCTCCACTA 59.115 50.000 12.86 3.53 0.00 2.74
1016 1170 3.508012 GGTGATATGTCGAGCTCCACTAT 59.492 47.826 12.86 7.83 0.00 2.12
1310 1472 5.716228 ACATTTTGAATGGCTGGATGACTAA 59.284 36.000 5.73 0.00 0.00 2.24
1406 1569 6.489022 TCTCTAAAAGTGCTACTGTGACAGTA 59.511 38.462 22.70 22.70 43.46 2.74
1564 1728 3.866066 GCTTACTTGCTGGTCATCACTCA 60.866 47.826 0.00 0.00 0.00 3.41
1690 1931 7.201644 GCTCTATGCTCTGTGTTGCTTAATTTA 60.202 37.037 0.00 0.00 38.95 1.40
1744 2052 4.876107 ACTTTCAGTTTCGTCAGACAACAT 59.124 37.500 0.41 0.00 0.00 2.71
1805 2139 2.594962 GGCCGTATCATTGCGTCGG 61.595 63.158 0.00 0.00 43.37 4.79
1827 2161 2.183409 CCGAAGGCCCACAAAGATG 58.817 57.895 0.00 0.00 46.14 2.90
1866 2203 0.605050 TGCACGCAATGGCTCTGTTA 60.605 50.000 0.00 0.00 38.10 2.41
1989 2404 5.336744 GCTACAGCACAACACTTTGTTTTA 58.663 37.500 0.00 0.00 43.89 1.52
2015 2431 8.453238 ACATGCGGGTATTATAAACATGTTTA 57.547 30.769 28.30 28.30 42.82 2.01
2144 2592 5.935206 TGCATCTGAAACCACGTCTAAAATA 59.065 36.000 0.00 0.00 0.00 1.40
2145 2593 6.428465 TGCATCTGAAACCACGTCTAAAATAA 59.572 34.615 0.00 0.00 0.00 1.40
2146 2594 7.120579 TGCATCTGAAACCACGTCTAAAATAAT 59.879 33.333 0.00 0.00 0.00 1.28
2147 2595 7.640240 GCATCTGAAACCACGTCTAAAATAATC 59.360 37.037 0.00 0.00 0.00 1.75
2148 2596 7.605410 TCTGAAACCACGTCTAAAATAATCC 57.395 36.000 0.00 0.00 0.00 3.01
2149 2597 6.596497 TCTGAAACCACGTCTAAAATAATCCC 59.404 38.462 0.00 0.00 0.00 3.85
2150 2598 5.648960 TGAAACCACGTCTAAAATAATCCCC 59.351 40.000 0.00 0.00 0.00 4.81
2151 2599 5.446260 AACCACGTCTAAAATAATCCCCT 57.554 39.130 0.00 0.00 0.00 4.79
2152 2600 6.564557 AACCACGTCTAAAATAATCCCCTA 57.435 37.500 0.00 0.00 0.00 3.53
2153 2601 6.564557 ACCACGTCTAAAATAATCCCCTAA 57.435 37.500 0.00 0.00 0.00 2.69
2154 2602 6.961042 ACCACGTCTAAAATAATCCCCTAAA 58.039 36.000 0.00 0.00 0.00 1.85
2155 2603 7.404481 ACCACGTCTAAAATAATCCCCTAAAA 58.596 34.615 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
598 700 9.615295 TTTGACCGAGCATAACTAATTTAAAAC 57.385 29.630 0.00 0.00 0.00 2.43
618 720 0.679505 GGGTTTCCAAGGCTTTGACC 59.320 55.000 10.61 9.58 36.36 4.02
730 835 2.362369 CCACATCCGAGGGCTGTCT 61.362 63.158 0.00 0.00 0.00 3.41
891 1011 1.363744 GTCGCTGCAGAATAAGCACT 58.636 50.000 20.43 0.00 39.47 4.40
987 1141 3.119101 AGCTCGACATATCACCGAAACTT 60.119 43.478 0.00 0.00 31.59 2.66
993 1147 0.668535 TGGAGCTCGACATATCACCG 59.331 55.000 7.83 0.00 0.00 4.94
1054 1208 0.687427 TCAGGACATCGCTCCATGGA 60.687 55.000 15.27 15.27 31.94 3.41
1092 1248 2.273370 TCGAAGTCAACCGTATCAGC 57.727 50.000 0.00 0.00 0.00 4.26
1310 1472 5.163519 CCCATTGAATTGAATCCGCTTAACT 60.164 40.000 0.00 0.00 0.00 2.24
1406 1569 1.138568 CCTTCAGATCTGCATCCCCT 58.861 55.000 18.36 0.00 0.00 4.79
1564 1728 8.758829 TGACACCACACTAATAACATCTCTAAT 58.241 33.333 0.00 0.00 0.00 1.73
1827 2161 5.065346 GTGCACTATTTTCTAGGCCTCTTTC 59.935 44.000 9.68 0.00 0.00 2.62
1866 2203 6.564557 ACCATGGCAATAATCAAGGAAAAT 57.435 33.333 13.04 0.00 0.00 1.82
1989 2404 6.952773 ACATGTTTATAATACCCGCATGTT 57.047 33.333 0.00 0.00 41.46 2.71
2063 2498 9.980780 GCTCTTAATAGCAAAAACAAAACAAAA 57.019 25.926 7.90 0.00 42.30 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.