Multiple sequence alignment - TraesCS2D01G414200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G414200 chr2D 100.000 4311 0 0 1 4311 528333420 528329110 0.000000e+00 7962.0
1 TraesCS2D01G414200 chr2D 96.875 32 1 0 3354 3385 134646916 134646885 2.000000e-03 54.7
2 TraesCS2D01G414200 chr2D 96.875 32 0 1 3351 3381 14633337 14633368 8.000000e-03 52.8
3 TraesCS2D01G414200 chr2A 87.876 2425 178 58 819 3199 672953184 672950832 0.000000e+00 2743.0
4 TraesCS2D01G414200 chr2A 78.168 797 72 46 33 782 672954165 672953424 8.630000e-112 414.0
5 TraesCS2D01G414200 chr2B 88.620 1986 136 53 1306 3253 626155448 626153515 0.000000e+00 2333.0
6 TraesCS2D01G414200 chr2B 81.488 1102 85 47 237 1248 626156550 626155478 0.000000e+00 795.0
7 TraesCS2D01G414200 chr2B 85.581 215 29 2 3411 3624 522787187 522787400 1.560000e-54 224.0
8 TraesCS2D01G414200 chr2B 88.535 157 17 1 2818 2973 151731458 151731302 5.690000e-44 189.0
9 TraesCS2D01G414200 chr2B 91.111 45 1 2 3356 3399 50302063 50302021 1.670000e-04 58.4
10 TraesCS2D01G414200 chr2B 96.875 32 0 1 3351 3381 26326966 26326997 8.000000e-03 52.8
11 TraesCS2D01G414200 chr4D 94.086 930 40 8 3387 4311 23235060 23234141 0.000000e+00 1399.0
12 TraesCS2D01G414200 chr6D 92.911 931 57 7 3387 4311 10676523 10675596 0.000000e+00 1345.0
13 TraesCS2D01G414200 chr6D 90.870 931 69 15 3390 4311 417883532 417884455 0.000000e+00 1234.0
14 TraesCS2D01G414200 chr1D 92.796 930 57 8 3387 4311 425566760 425565836 0.000000e+00 1338.0
15 TraesCS2D01G414200 chr1D 92.424 924 61 6 3391 4311 29803829 29804746 0.000000e+00 1310.0
16 TraesCS2D01G414200 chr5B 91.056 928 72 8 3390 4311 326615590 326614668 0.000000e+00 1243.0
17 TraesCS2D01G414200 chr5B 86.007 293 37 4 3390 3681 676167583 676167872 1.160000e-80 311.0
18 TraesCS2D01G414200 chr5B 89.172 157 16 1 2818 2973 142425338 142425494 1.220000e-45 195.0
19 TraesCS2D01G414200 chr4B 90.802 935 67 12 3390 4311 52650430 52651358 0.000000e+00 1232.0
20 TraesCS2D01G414200 chr4B 76.471 833 139 34 2182 2973 485429858 485429042 2.420000e-107 399.0
21 TraesCS2D01G414200 chr1B 90.578 934 73 7 3390 4310 675986013 675985082 0.000000e+00 1223.0
22 TraesCS2D01G414200 chr1B 88.372 387 21 7 2335 2702 87283797 87283416 1.100000e-120 444.0
23 TraesCS2D01G414200 chr1B 87.855 387 23 7 2335 2702 32165614 32165233 2.380000e-117 433.0
24 TraesCS2D01G414200 chr1B 88.535 157 17 1 2818 2973 262757067 262756911 5.690000e-44 189.0
25 TraesCS2D01G414200 chr4A 90.625 928 76 10 3390 4311 560889774 560888852 0.000000e+00 1221.0
26 TraesCS2D01G414200 chr7A 88.133 750 64 14 3390 4125 734003569 734004307 0.000000e+00 869.0
27 TraesCS2D01G414200 chr6B 87.898 157 18 1 2818 2973 83596810 83596654 2.650000e-42 183.0
28 TraesCS2D01G414200 chr7B 89.412 85 6 1 2335 2419 575770807 575770726 2.120000e-18 104.0
29 TraesCS2D01G414200 chr3B 100.000 30 0 0 3352 3381 60538898 60538927 6.020000e-04 56.5
30 TraesCS2D01G414200 chr5D 100.000 29 0 0 3353 3381 438335584 438335612 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G414200 chr2D 528329110 528333420 4310 True 7962.0 7962 100.000 1 4311 1 chr2D.!!$R2 4310
1 TraesCS2D01G414200 chr2A 672950832 672954165 3333 True 1578.5 2743 83.022 33 3199 2 chr2A.!!$R1 3166
2 TraesCS2D01G414200 chr2B 626153515 626156550 3035 True 1564.0 2333 85.054 237 3253 2 chr2B.!!$R3 3016
3 TraesCS2D01G414200 chr4D 23234141 23235060 919 True 1399.0 1399 94.086 3387 4311 1 chr4D.!!$R1 924
4 TraesCS2D01G414200 chr6D 10675596 10676523 927 True 1345.0 1345 92.911 3387 4311 1 chr6D.!!$R1 924
5 TraesCS2D01G414200 chr6D 417883532 417884455 923 False 1234.0 1234 90.870 3390 4311 1 chr6D.!!$F1 921
6 TraesCS2D01G414200 chr1D 425565836 425566760 924 True 1338.0 1338 92.796 3387 4311 1 chr1D.!!$R1 924
7 TraesCS2D01G414200 chr1D 29803829 29804746 917 False 1310.0 1310 92.424 3391 4311 1 chr1D.!!$F1 920
8 TraesCS2D01G414200 chr5B 326614668 326615590 922 True 1243.0 1243 91.056 3390 4311 1 chr5B.!!$R1 921
9 TraesCS2D01G414200 chr4B 52650430 52651358 928 False 1232.0 1232 90.802 3390 4311 1 chr4B.!!$F1 921
10 TraesCS2D01G414200 chr4B 485429042 485429858 816 True 399.0 399 76.471 2182 2973 1 chr4B.!!$R1 791
11 TraesCS2D01G414200 chr1B 675985082 675986013 931 True 1223.0 1223 90.578 3390 4310 1 chr1B.!!$R4 920
12 TraesCS2D01G414200 chr4A 560888852 560889774 922 True 1221.0 1221 90.625 3390 4311 1 chr4A.!!$R1 921
13 TraesCS2D01G414200 chr7A 734003569 734004307 738 False 869.0 869 88.133 3390 4125 1 chr7A.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 508 0.389166 GACAGAGGCAGACAGGAACG 60.389 60.0 0.0 0.0 0.0 3.95 F
1649 1989 0.037326 GCACACATCGAGAGGGACAA 60.037 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 2140 0.11319 ACCCCTTTCTTTCCCTGCAG 59.887 55.0 6.78 6.78 0.0 4.41 R
3355 3820 0.03563 GTGGCTGTTGGAGATGCTCT 60.036 55.0 0.00 0.00 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.050350 CGCCTTCTAGACCCGTCCA 61.050 63.158 0.00 0.00 0.00 4.02
61 62 1.817209 GCCTTCTAGACCCGTCCAG 59.183 63.158 0.00 0.00 0.00 3.86
62 63 0.683504 GCCTTCTAGACCCGTCCAGA 60.684 60.000 0.00 0.00 0.00 3.86
63 64 1.394618 CCTTCTAGACCCGTCCAGAG 58.605 60.000 0.00 0.00 29.60 3.35
66 67 2.599408 TCTAGACCCGTCCAGAGTTT 57.401 50.000 0.00 0.00 0.00 2.66
68 69 1.477295 CTAGACCCGTCCAGAGTTTCC 59.523 57.143 0.00 0.00 0.00 3.13
69 70 1.080025 GACCCGTCCAGAGTTTCCG 60.080 63.158 0.00 0.00 0.00 4.30
70 71 1.813728 GACCCGTCCAGAGTTTCCGT 61.814 60.000 0.00 0.00 0.00 4.69
79 82 2.288640 CCAGAGTTTCCGTACCTTTCGT 60.289 50.000 0.00 0.00 0.00 3.85
85 88 2.030958 CCGTACCTTTCGTGTGCCC 61.031 63.158 0.00 0.00 0.00 5.36
86 89 2.030958 CGTACCTTTCGTGTGCCCC 61.031 63.158 0.00 0.00 0.00 5.80
87 90 2.030958 GTACCTTTCGTGTGCCCCG 61.031 63.158 0.00 0.00 0.00 5.73
88 91 3.887335 TACCTTTCGTGTGCCCCGC 62.887 63.158 0.00 0.00 0.00 6.13
90 93 3.726517 CTTTCGTGTGCCCCGCAG 61.727 66.667 0.00 0.00 40.08 5.18
120 123 1.275291 CACCACCTGTCTCCACGTAAT 59.725 52.381 0.00 0.00 0.00 1.89
134 137 1.340211 ACGTAATCCGCCCAATCCAAA 60.340 47.619 0.00 0.00 41.42 3.28
137 146 0.975556 AATCCGCCCAATCCAAACCC 60.976 55.000 0.00 0.00 0.00 4.11
160 169 4.629523 GTTCCCCGCCCGAACACA 62.630 66.667 0.00 0.00 39.54 3.72
161 170 4.629523 TTCCCCGCCCGAACACAC 62.630 66.667 0.00 0.00 0.00 3.82
220 229 2.193536 GCCAAACCGGTTGCACTCT 61.194 57.895 23.08 0.00 35.74 3.24
221 230 0.887387 GCCAAACCGGTTGCACTCTA 60.887 55.000 23.08 0.00 35.74 2.43
223 232 2.937873 GCCAAACCGGTTGCACTCTATA 60.938 50.000 23.08 0.00 35.74 1.31
224 233 3.541632 CCAAACCGGTTGCACTCTATAT 58.458 45.455 23.08 0.00 35.74 0.86
225 234 3.560068 CCAAACCGGTTGCACTCTATATC 59.440 47.826 23.08 0.00 35.74 1.63
226 235 2.795175 ACCGGTTGCACTCTATATCG 57.205 50.000 0.00 0.00 0.00 2.92
235 244 3.188667 TGCACTCTATATCGCTACGAAGG 59.811 47.826 0.00 0.00 39.99 3.46
253 262 4.142730 CGAAGGGAGAAAAATCTTCTGCTG 60.143 45.833 6.06 0.00 37.12 4.41
273 282 3.282021 TGCTTTTCTTCAGACTGTTGCT 58.718 40.909 1.59 0.00 0.00 3.91
278 287 5.490139 TTTCTTCAGACTGTTGCTTGAAG 57.510 39.130 1.59 14.02 35.45 3.02
279 288 4.406648 TCTTCAGACTGTTGCTTGAAGA 57.593 40.909 16.72 16.72 39.25 2.87
283 294 6.319658 TCTTCAGACTGTTGCTTGAAGAAAAT 59.680 34.615 17.61 0.00 38.81 1.82
288 299 9.252962 CAGACTGTTGCTTGAAGAAAATAAAAT 57.747 29.630 0.00 0.00 0.00 1.82
322 344 0.666374 TTGTCTCTGACGAGTTGCGA 59.334 50.000 0.00 0.00 44.57 5.10
362 384 4.677673 ATGACCGAGACAATCATGATGA 57.322 40.909 9.46 0.00 31.84 2.92
404 426 0.985549 GCACTAGTTCGTTCAGCTCG 59.014 55.000 0.00 0.00 0.00 5.03
405 427 1.401148 GCACTAGTTCGTTCAGCTCGA 60.401 52.381 0.00 0.00 35.50 4.04
406 428 2.510874 CACTAGTTCGTTCAGCTCGAG 58.489 52.381 8.45 8.45 38.52 4.04
409 431 2.053282 AGTTCGTTCAGCTCGAGTTC 57.947 50.000 15.13 0.00 38.52 3.01
410 432 1.337071 AGTTCGTTCAGCTCGAGTTCA 59.663 47.619 15.13 0.00 38.52 3.18
448 492 3.911698 AGTCACGCGGCACAGACA 61.912 61.111 12.47 0.00 33.56 3.41
464 508 0.389166 GACAGAGGCAGACAGGAACG 60.389 60.000 0.00 0.00 0.00 3.95
498 542 2.858344 CACGGAGACCTAACTAATTGCG 59.142 50.000 0.00 0.00 0.00 4.85
509 556 6.882678 ACCTAACTAATTGCGACCACTAAAAT 59.117 34.615 0.00 0.00 0.00 1.82
510 557 8.042515 ACCTAACTAATTGCGACCACTAAAATA 58.957 33.333 0.00 0.00 0.00 1.40
533 583 9.807649 AATAAATCAATCAATAAAGCTGACACC 57.192 29.630 0.00 0.00 0.00 4.16
535 585 5.627499 TCAATCAATAAAGCTGACACCAC 57.373 39.130 0.00 0.00 0.00 4.16
536 586 5.069318 TCAATCAATAAAGCTGACACCACA 58.931 37.500 0.00 0.00 0.00 4.17
541 591 2.608970 AAAGCTGACACCACAGGCGT 62.609 55.000 0.00 0.00 38.22 5.68
543 593 2.421314 CTGACACCACAGGCGTGA 59.579 61.111 14.38 0.00 46.80 4.35
544 594 1.956170 CTGACACCACAGGCGTGAC 60.956 63.158 14.38 0.00 46.80 3.67
546 596 3.493830 GACACCACAGGCGTGACGA 62.494 63.158 10.10 0.00 46.80 4.20
548 598 4.664677 ACCACAGGCGTGACGAGC 62.665 66.667 10.10 0.00 46.80 5.03
579 644 2.355756 GTGATCACGGCATTGCTTATGT 59.644 45.455 10.69 0.00 36.57 2.29
580 645 3.016031 TGATCACGGCATTGCTTATGTT 58.984 40.909 8.82 0.29 36.57 2.71
669 741 3.434319 CACCCACATGCGTCTGGC 61.434 66.667 0.00 0.00 43.96 4.85
684 761 2.121992 CTGGCACTCTGGGTTCTGCT 62.122 60.000 0.00 0.00 0.00 4.24
688 765 1.943507 GCACTCTGGGTTCTGCTTCTC 60.944 57.143 0.00 0.00 0.00 2.87
695 772 1.280421 GGGTTCTGCTTCTCCATGTCT 59.720 52.381 0.00 0.00 0.00 3.41
751 831 2.354821 ACACCGTGCTTTTGTTCTCTTC 59.645 45.455 0.00 0.00 0.00 2.87
758 838 4.272748 GTGCTTTTGTTCTCTTCCGTAGTT 59.727 41.667 0.00 0.00 0.00 2.24
802 1099 9.090103 ACTCCTAATGATAACAATCGGATTAGA 57.910 33.333 2.35 0.00 0.00 2.10
804 1101 9.090103 TCCTAATGATAACAATCGGATTAGAGT 57.910 33.333 2.35 0.00 0.00 3.24
814 1111 1.967066 CGGATTAGAGTGAGGCCATCT 59.033 52.381 5.01 5.21 0.00 2.90
815 1112 3.157881 CGGATTAGAGTGAGGCCATCTA 58.842 50.000 5.01 4.12 0.00 1.98
972 1294 3.397613 GAGCTCAGCCATTCGCCCT 62.398 63.158 9.40 0.00 38.78 5.19
988 1310 2.125552 CTCGGACATCGCAAGGCA 60.126 61.111 0.00 0.00 39.05 4.75
1013 1335 2.686405 ACGCCGTATCAGTTCATACTCA 59.314 45.455 0.00 0.00 30.26 3.41
1014 1336 3.043586 CGCCGTATCAGTTCATACTCAC 58.956 50.000 0.00 0.00 30.26 3.51
1015 1337 3.488553 CGCCGTATCAGTTCATACTCACA 60.489 47.826 0.00 0.00 30.26 3.58
1017 1339 4.035684 CCGTATCAGTTCATACTCACACG 58.964 47.826 0.00 0.00 32.54 4.49
1059 1391 1.470098 GATAGCACTGCAACTTGGGTG 59.530 52.381 3.30 0.00 0.00 4.61
1062 1394 2.906897 ACTGCAACTTGGGTGGCG 60.907 61.111 0.00 0.00 44.96 5.69
1071 1403 1.454847 TTGGGTGGCGCTTTGTCTT 60.455 52.632 7.64 0.00 0.00 3.01
1072 1404 1.040339 TTGGGTGGCGCTTTGTCTTT 61.040 50.000 7.64 0.00 0.00 2.52
1073 1405 1.007387 GGGTGGCGCTTTGTCTTTG 60.007 57.895 7.64 0.00 0.00 2.77
1076 1408 1.401539 GGTGGCGCTTTGTCTTTGATC 60.402 52.381 7.64 0.00 0.00 2.92
1077 1409 1.537202 GTGGCGCTTTGTCTTTGATCT 59.463 47.619 7.64 0.00 0.00 2.75
1078 1410 1.806542 TGGCGCTTTGTCTTTGATCTC 59.193 47.619 7.64 0.00 0.00 2.75
1079 1411 1.806542 GGCGCTTTGTCTTTGATCTCA 59.193 47.619 7.64 0.00 0.00 3.27
1080 1412 2.159599 GGCGCTTTGTCTTTGATCTCAG 60.160 50.000 7.64 0.00 0.00 3.35
1081 1413 2.481952 GCGCTTTGTCTTTGATCTCAGT 59.518 45.455 0.00 0.00 0.00 3.41
1082 1414 3.424170 GCGCTTTGTCTTTGATCTCAGTC 60.424 47.826 0.00 0.00 0.00 3.51
1083 1415 3.124297 CGCTTTGTCTTTGATCTCAGTCC 59.876 47.826 0.00 0.00 0.00 3.85
1084 1416 3.124297 GCTTTGTCTTTGATCTCAGTCCG 59.876 47.826 0.00 0.00 0.00 4.79
1105 1437 1.153147 GGGAAGGGATTGGTCGAGC 60.153 63.158 7.89 7.89 0.00 5.03
1209 1544 3.055719 CAGCGCCGGAAACACCAT 61.056 61.111 5.05 0.00 38.90 3.55
1234 1569 1.051008 TCTTCAACTGCTCCAGCTCA 58.949 50.000 0.00 0.00 42.66 4.26
1248 1583 1.068250 GCTCATCCAGAGGTACGGC 59.932 63.158 0.00 0.00 44.86 5.68
1249 1584 1.742768 CTCATCCAGAGGTACGGCC 59.257 63.158 0.00 0.00 40.84 6.13
1250 1585 2.076622 CTCATCCAGAGGTACGGCCG 62.077 65.000 26.86 26.86 43.70 6.13
1272 1607 2.644676 CTCCTATCTGTCACTCCGTCA 58.355 52.381 0.00 0.00 0.00 4.35
1274 1609 1.066303 CCTATCTGTCACTCCGTCAGC 59.934 57.143 0.00 0.00 31.59 4.26
1277 1612 1.080230 CTGTCACTCCGTCAGCCAG 60.080 63.158 0.00 0.00 0.00 4.85
1279 1614 1.080434 GTCACTCCGTCAGCCAGTC 60.080 63.158 0.00 0.00 0.00 3.51
1280 1615 1.530655 TCACTCCGTCAGCCAGTCA 60.531 57.895 0.00 0.00 0.00 3.41
1282 1617 2.262915 CTCCGTCAGCCAGTCACC 59.737 66.667 0.00 0.00 0.00 4.02
1283 1618 3.633094 CTCCGTCAGCCAGTCACCG 62.633 68.421 0.00 0.00 0.00 4.94
1286 1621 4.008933 GTCAGCCAGTCACCGCCT 62.009 66.667 0.00 0.00 0.00 5.52
1287 1622 2.283604 TCAGCCAGTCACCGCCTA 60.284 61.111 0.00 0.00 0.00 3.93
1288 1623 1.685765 TCAGCCAGTCACCGCCTAT 60.686 57.895 0.00 0.00 0.00 2.57
1289 1624 1.522355 CAGCCAGTCACCGCCTATG 60.522 63.158 0.00 0.00 0.00 2.23
1290 1625 1.990060 AGCCAGTCACCGCCTATGT 60.990 57.895 0.00 0.00 0.00 2.29
1291 1626 1.815421 GCCAGTCACCGCCTATGTG 60.815 63.158 0.00 0.00 35.01 3.21
1292 1627 1.815421 CCAGTCACCGCCTATGTGC 60.815 63.158 0.00 0.00 33.71 4.57
1304 1639 3.873529 GCCTATGTGCGTAGTTTTATGC 58.126 45.455 0.00 0.00 41.30 3.14
1338 1678 2.167808 CTCACTCGCTGTGTTGCTGC 62.168 60.000 7.94 0.00 46.27 5.25
1454 1794 0.321653 GAGTGGATGGGCGTCAACTT 60.322 55.000 0.00 0.00 32.52 2.66
1635 1975 2.027897 TCCGTGGTACGTGCACAC 59.972 61.111 18.64 8.29 40.58 3.82
1647 1987 0.737715 GTGCACACATCGAGAGGGAC 60.738 60.000 13.17 0.00 0.00 4.46
1648 1988 1.184970 TGCACACATCGAGAGGGACA 61.185 55.000 0.00 0.00 0.00 4.02
1649 1989 0.037326 GCACACATCGAGAGGGACAA 60.037 55.000 0.00 0.00 0.00 3.18
1701 2073 7.806690 TCAGTAATTTATGAACTGTTCACTGC 58.193 34.615 24.17 10.67 43.48 4.40
1702 2074 6.738200 CAGTAATTTATGAACTGTTCACTGCG 59.262 38.462 24.17 4.22 43.48 5.18
1703 2075 5.940192 AATTTATGAACTGTTCACTGCGA 57.060 34.783 24.17 10.11 43.48 5.10
1704 2076 6.500684 AATTTATGAACTGTTCACTGCGAT 57.499 33.333 24.17 10.80 43.48 4.58
1705 2077 7.609760 AATTTATGAACTGTTCACTGCGATA 57.390 32.000 24.17 9.84 43.48 2.92
1706 2078 6.403333 TTTATGAACTGTTCACTGCGATAC 57.597 37.500 24.17 0.00 43.48 2.24
1707 2079 3.660501 TGAACTGTTCACTGCGATACT 57.339 42.857 18.69 0.00 34.08 2.12
1708 2080 3.317150 TGAACTGTTCACTGCGATACTG 58.683 45.455 18.69 0.00 34.08 2.74
1714 2086 3.125146 TGTTCACTGCGATACTGAAATGC 59.875 43.478 0.00 0.00 0.00 3.56
1741 2113 3.535561 CAACTCACTGTCACTTGGTTCT 58.464 45.455 0.00 0.00 0.00 3.01
1754 2126 6.801862 GTCACTTGGTTCTGTTATTTACATGC 59.198 38.462 0.00 0.00 35.85 4.06
1757 2129 3.127895 TGGTTCTGTTATTTACATGCGCC 59.872 43.478 4.18 0.00 35.85 6.53
1768 2140 1.584483 CATGCGCCGTGATTCTTGC 60.584 57.895 4.18 0.00 0.00 4.01
1809 2181 3.800628 GCTGAAATTGCCAGTGGAC 57.199 52.632 15.20 4.87 34.29 4.02
1843 2215 3.585289 TGTTCCCATAGCAGTCAAGGTAA 59.415 43.478 0.00 0.00 0.00 2.85
1851 2223 7.275920 CCATAGCAGTCAAGGTAAGAATACTT 58.724 38.462 0.00 0.00 39.81 2.24
1852 2224 7.439655 CCATAGCAGTCAAGGTAAGAATACTTC 59.560 40.741 0.00 0.00 37.53 3.01
1854 2226 6.402222 AGCAGTCAAGGTAAGAATACTTCTG 58.598 40.000 0.00 0.00 40.59 3.02
1855 2227 6.014156 AGCAGTCAAGGTAAGAATACTTCTGT 60.014 38.462 0.00 0.00 40.59 3.41
1856 2228 7.178628 AGCAGTCAAGGTAAGAATACTTCTGTA 59.821 37.037 0.00 0.00 40.59 2.74
1857 2229 7.489757 GCAGTCAAGGTAAGAATACTTCTGTAG 59.510 40.741 0.00 0.00 40.59 2.74
1858 2230 8.524487 CAGTCAAGGTAAGAATACTTCTGTAGT 58.476 37.037 0.00 0.00 40.59 2.73
1859 2231 9.091220 AGTCAAGGTAAGAATACTTCTGTAGTT 57.909 33.333 0.00 0.00 40.59 2.24
1860 2232 9.141400 GTCAAGGTAAGAATACTTCTGTAGTTG 57.859 37.037 0.00 0.00 40.59 3.16
1861 2233 8.867097 TCAAGGTAAGAATACTTCTGTAGTTGT 58.133 33.333 0.00 0.00 40.59 3.32
1868 2240 8.934507 AGAATACTTCTGTAGTTGTATTGCTC 57.065 34.615 12.84 4.52 38.91 4.26
1869 2241 8.754080 AGAATACTTCTGTAGTTGTATTGCTCT 58.246 33.333 12.84 5.94 38.91 4.09
1870 2242 9.372369 GAATACTTCTGTAGTTGTATTGCTCTT 57.628 33.333 12.84 0.00 38.33 2.85
1871 2243 8.934507 ATACTTCTGTAGTTGTATTGCTCTTC 57.065 34.615 0.00 0.00 38.33 2.87
1872 2244 6.166982 ACTTCTGTAGTTGTATTGCTCTTCC 58.833 40.000 0.00 0.00 31.29 3.46
1873 2245 6.014156 ACTTCTGTAGTTGTATTGCTCTTCCT 60.014 38.462 0.00 0.00 31.29 3.36
1874 2246 5.967088 TCTGTAGTTGTATTGCTCTTCCTC 58.033 41.667 0.00 0.00 0.00 3.71
1875 2247 5.717178 TCTGTAGTTGTATTGCTCTTCCTCT 59.283 40.000 0.00 0.00 0.00 3.69
1876 2248 6.211584 TCTGTAGTTGTATTGCTCTTCCTCTT 59.788 38.462 0.00 0.00 0.00 2.85
1877 2249 6.769512 TGTAGTTGTATTGCTCTTCCTCTTT 58.230 36.000 0.00 0.00 0.00 2.52
1883 2255 6.574350 TGTATTGCTCTTCCTCTTTACTAGC 58.426 40.000 0.00 0.00 0.00 3.42
1915 2287 4.346709 TCAGTTGTCTGAACCTGGTGATAA 59.653 41.667 0.00 0.00 46.17 1.75
1918 2290 6.207417 CAGTTGTCTGAACCTGGTGATAAAAT 59.793 38.462 0.00 0.00 43.76 1.82
1922 2294 7.054124 TGTCTGAACCTGGTGATAAAATATCC 58.946 38.462 0.00 0.00 0.00 2.59
1926 2298 6.987992 TGAACCTGGTGATAAAATATCCGTAC 59.012 38.462 0.00 0.00 0.00 3.67
1946 2324 5.807520 CGTACTTCACTGAACTGATGCTATT 59.192 40.000 0.00 0.00 0.00 1.73
1958 2336 8.055181 TGAACTGATGCTATTTCCCTAAATCTT 58.945 33.333 0.00 0.00 36.67 2.40
2091 2469 2.106683 CGGGGGCTTCGTGATCAAC 61.107 63.158 0.00 0.00 0.00 3.18
2108 2486 4.137116 TCAACGATCAAATGGAGGTAGG 57.863 45.455 0.00 0.00 0.00 3.18
2143 2521 3.259876 AGTGCTAGTAATGGTTTCGGTCA 59.740 43.478 0.00 0.00 0.00 4.02
2155 2533 4.717778 TGGTTTCGGTCAGAAGGGATAATA 59.282 41.667 0.00 0.00 40.40 0.98
2161 2539 5.302059 TCGGTCAGAAGGGATAATAACTGAG 59.698 44.000 0.00 0.00 35.55 3.35
2174 2552 2.981859 AACTGAGGAAGTTCGTGTGT 57.018 45.000 2.13 0.00 46.60 3.72
2185 2563 3.262420 AGTTCGTGTGTCTAATGGCATC 58.738 45.455 0.00 0.00 0.00 3.91
2231 2609 2.093973 AGTGGTGCAAGAGAAGTATCGG 60.094 50.000 0.00 0.00 0.00 4.18
2303 2681 2.186076 GTAAGGACGCACTGAAGATCG 58.814 52.381 0.00 0.00 0.00 3.69
2305 2683 0.603569 AGGACGCACTGAAGATCGTT 59.396 50.000 0.00 0.00 35.12 3.85
2324 2702 4.091548 GCGATACAACGGCGGTAA 57.908 55.556 13.24 0.00 0.00 2.85
2325 2703 2.596875 GCGATACAACGGCGGTAAT 58.403 52.632 13.24 0.82 0.00 1.89
2326 2704 0.932399 GCGATACAACGGCGGTAATT 59.068 50.000 13.24 0.00 0.00 1.40
2327 2705 1.071041 GCGATACAACGGCGGTAATTC 60.071 52.381 13.24 0.57 0.00 2.17
2329 2707 2.798283 CGATACAACGGCGGTAATTCAT 59.202 45.455 13.24 0.00 0.00 2.57
2331 2709 1.091537 ACAACGGCGGTAATTCATGG 58.908 50.000 13.24 0.00 0.00 3.66
2332 2710 1.091537 CAACGGCGGTAATTCATGGT 58.908 50.000 13.24 0.00 0.00 3.55
2361 2743 5.523369 GCTGTTACTGAAGCAATTGTTCTT 58.477 37.500 7.40 2.59 39.31 2.52
2362 2744 5.626955 GCTGTTACTGAAGCAATTGTTCTTC 59.373 40.000 15.17 15.17 39.31 2.87
2363 2745 6.514048 GCTGTTACTGAAGCAATTGTTCTTCT 60.514 38.462 19.93 8.92 39.41 2.85
2389 2771 8.027524 TCCTCTTGCAGTCAGAAGAAATATAT 57.972 34.615 0.00 0.00 0.00 0.86
2404 2786 5.129485 AGAAATATATACGGGAGCCATCAGG 59.871 44.000 0.00 0.00 38.23 3.86
2453 2850 3.914426 AGAAACCGAGCACTTGGATAT 57.086 42.857 11.05 0.00 37.57 1.63
2463 2860 5.485662 AGCACTTGGATATACTTTTTCGC 57.514 39.130 0.00 0.00 0.00 4.70
2492 2890 5.499139 TGGTTCTGAATGTGTTGTTCTTC 57.501 39.130 0.00 0.00 0.00 2.87
2501 2899 3.130633 TGTGTTGTTCTTCTGGTGATCG 58.869 45.455 0.00 0.00 0.00 3.69
2534 2932 2.416547 CACTGAATTCGTGGATGTGGTC 59.583 50.000 17.31 0.00 0.00 4.02
2561 2959 3.338249 CAGGTAAACACTCATCCACCTG 58.662 50.000 4.33 4.33 44.98 4.00
2752 3166 1.604604 TTCAGGCAGCAAAGGTACAC 58.395 50.000 0.00 0.00 0.00 2.90
2780 3194 7.141363 CCATCTTCAAAACTACACCTGAAAAG 58.859 38.462 0.00 0.00 0.00 2.27
2781 3195 7.013274 CCATCTTCAAAACTACACCTGAAAAGA 59.987 37.037 0.00 0.00 0.00 2.52
2782 3196 7.931578 TCTTCAAAACTACACCTGAAAAGAA 57.068 32.000 0.00 0.00 0.00 2.52
2783 3197 7.985476 TCTTCAAAACTACACCTGAAAAGAAG 58.015 34.615 0.00 0.00 0.00 2.85
2784 3198 7.610305 TCTTCAAAACTACACCTGAAAAGAAGT 59.390 33.333 0.00 0.00 31.97 3.01
2787 3201 7.392113 TCAAAACTACACCTGAAAAGAAGTTCA 59.608 33.333 5.50 0.00 36.15 3.18
2788 3202 7.881775 AAACTACACCTGAAAAGAAGTTCAT 57.118 32.000 5.50 0.00 36.92 2.57
2789 3203 7.497925 AACTACACCTGAAAAGAAGTTCATC 57.502 36.000 5.50 1.31 36.92 2.92
2790 3204 5.696724 ACTACACCTGAAAAGAAGTTCATCG 59.303 40.000 5.50 0.00 36.92 3.84
2791 3205 4.703897 ACACCTGAAAAGAAGTTCATCGA 58.296 39.130 5.50 0.00 36.92 3.59
2794 3212 6.369065 ACACCTGAAAAGAAGTTCATCGATAC 59.631 38.462 5.50 0.00 36.92 2.24
2797 3215 7.607991 ACCTGAAAAGAAGTTCATCGATACAAT 59.392 33.333 5.50 0.00 36.92 2.71
2805 3223 6.910536 AGTTCATCGATACAATCTTTGGTC 57.089 37.500 0.00 0.00 34.12 4.02
2815 3233 3.775316 ACAATCTTTGGTCCGGAGTATCT 59.225 43.478 3.06 0.00 32.01 1.98
2853 3310 7.993101 AGCGTCTATATATATCGTGCCTTTAA 58.007 34.615 0.00 0.00 0.00 1.52
2854 3311 8.630917 AGCGTCTATATATATCGTGCCTTTAAT 58.369 33.333 0.00 0.00 0.00 1.40
3090 3547 0.170339 GGGTCGCCGGATTCTTTTTG 59.830 55.000 5.05 0.00 0.00 2.44
3091 3548 0.456142 GGTCGCCGGATTCTTTTTGC 60.456 55.000 5.05 0.00 0.00 3.68
3092 3549 0.521735 GTCGCCGGATTCTTTTTGCT 59.478 50.000 5.05 0.00 0.00 3.91
3093 3550 0.802494 TCGCCGGATTCTTTTTGCTC 59.198 50.000 5.05 0.00 0.00 4.26
3095 3552 1.466360 CGCCGGATTCTTTTTGCTCTG 60.466 52.381 5.05 0.00 0.00 3.35
3097 3554 1.474077 CCGGATTCTTTTTGCTCTGGG 59.526 52.381 0.00 0.00 31.66 4.45
3098 3555 2.436417 CGGATTCTTTTTGCTCTGGGA 58.564 47.619 0.00 0.00 0.00 4.37
3100 3557 2.493675 GGATTCTTTTTGCTCTGGGACC 59.506 50.000 0.00 0.00 0.00 4.46
3101 3558 3.425659 GATTCTTTTTGCTCTGGGACCT 58.574 45.455 0.00 0.00 0.00 3.85
3103 3560 2.057922 TCTTTTTGCTCTGGGACCTCT 58.942 47.619 0.00 0.00 0.00 3.69
3109 3566 0.971447 GCTCTGGGACCTCTACCGTT 60.971 60.000 0.00 0.00 0.00 4.44
3114 3571 1.358787 TGGGACCTCTACCGTTTAGGA 59.641 52.381 5.98 0.00 45.00 2.94
3115 3572 2.225343 TGGGACCTCTACCGTTTAGGAA 60.225 50.000 5.98 0.00 45.00 3.36
3118 3575 4.442612 GGGACCTCTACCGTTTAGGAATTC 60.443 50.000 0.00 0.00 45.00 2.17
3119 3576 4.442612 GGACCTCTACCGTTTAGGAATTCC 60.443 50.000 17.31 17.31 45.00 3.01
3125 3582 1.471327 CCGTTTAGGAATTCCGCGGTA 60.471 52.381 28.27 17.72 45.00 4.02
3133 3590 2.159612 GGAATTCCGCGGTACAAAGTTC 60.160 50.000 27.15 16.85 0.00 3.01
3136 3593 2.352503 TCCGCGGTACAAAGTTCTAC 57.647 50.000 27.15 0.00 0.00 2.59
3137 3594 1.888512 TCCGCGGTACAAAGTTCTACT 59.111 47.619 27.15 0.00 0.00 2.57
3139 3596 3.127548 TCCGCGGTACAAAGTTCTACTAG 59.872 47.826 27.15 0.00 0.00 2.57
3140 3597 2.850647 CGCGGTACAAAGTTCTACTAGC 59.149 50.000 0.00 0.00 0.00 3.42
3142 3599 4.430908 GCGGTACAAAGTTCTACTAGCAT 58.569 43.478 0.00 0.00 0.00 3.79
3143 3600 4.503370 GCGGTACAAAGTTCTACTAGCATC 59.497 45.833 0.00 0.00 0.00 3.91
3144 3601 5.647589 CGGTACAAAGTTCTACTAGCATCA 58.352 41.667 0.00 0.00 0.00 3.07
3192 3657 6.875972 AGAAGACTGTAATTAGACATGGGT 57.124 37.500 0.00 0.00 0.00 4.51
3200 3665 0.252330 TTAGACATGGGTGGGACGGA 60.252 55.000 0.00 0.00 0.00 4.69
3218 3683 2.733517 GGATTAGCTCTGTCGTGTAGC 58.266 52.381 0.00 0.00 36.48 3.58
3222 3687 4.976224 TTAGCTCTGTCGTGTAGCAATA 57.024 40.909 0.00 0.00 38.75 1.90
3223 3688 3.868757 AGCTCTGTCGTGTAGCAATAA 57.131 42.857 0.00 0.00 38.75 1.40
3224 3689 4.392921 AGCTCTGTCGTGTAGCAATAAT 57.607 40.909 0.00 0.00 38.75 1.28
3225 3690 4.115516 AGCTCTGTCGTGTAGCAATAATG 58.884 43.478 0.00 0.00 38.75 1.90
3226 3691 3.865745 GCTCTGTCGTGTAGCAATAATGT 59.134 43.478 0.00 0.00 36.26 2.71
3227 3692 5.041287 GCTCTGTCGTGTAGCAATAATGTA 58.959 41.667 0.00 0.00 36.26 2.29
3228 3693 5.051641 GCTCTGTCGTGTAGCAATAATGTAC 60.052 44.000 0.00 0.00 36.26 2.90
3233 3698 7.191551 TGTCGTGTAGCAATAATGTACTACTC 58.808 38.462 0.00 0.00 36.72 2.59
3247 3712 7.589958 ATGTACTACTCCTATTCTTCAGTGG 57.410 40.000 0.00 0.00 0.00 4.00
3253 3718 1.473434 CCTATTCTTCAGTGGACCGGC 60.473 57.143 0.00 0.00 0.00 6.13
3254 3719 1.482593 CTATTCTTCAGTGGACCGGCT 59.517 52.381 0.00 0.00 0.00 5.52
3255 3720 0.693049 ATTCTTCAGTGGACCGGCTT 59.307 50.000 0.00 0.00 0.00 4.35
3256 3721 0.250295 TTCTTCAGTGGACCGGCTTG 60.250 55.000 0.00 0.00 0.00 4.01
3257 3722 1.118965 TCTTCAGTGGACCGGCTTGA 61.119 55.000 0.00 0.00 0.00 3.02
3258 3723 0.036010 CTTCAGTGGACCGGCTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
3259 3724 0.321564 TTCAGTGGACCGGCTTGATG 60.322 55.000 0.00 0.00 0.00 3.07
3260 3725 1.746615 CAGTGGACCGGCTTGATGG 60.747 63.158 0.00 0.00 0.00 3.51
3261 3726 2.438434 GTGGACCGGCTTGATGGG 60.438 66.667 0.00 0.00 0.00 4.00
3262 3727 2.933287 TGGACCGGCTTGATGGGT 60.933 61.111 0.00 0.00 36.58 4.51
3263 3728 1.613928 TGGACCGGCTTGATGGGTA 60.614 57.895 0.00 0.00 33.28 3.69
3264 3729 0.986019 TGGACCGGCTTGATGGGTAT 60.986 55.000 0.00 0.00 33.28 2.73
3265 3730 0.535102 GGACCGGCTTGATGGGTATG 60.535 60.000 0.00 0.00 33.28 2.39
3266 3731 0.535102 GACCGGCTTGATGGGTATGG 60.535 60.000 0.00 0.00 33.28 2.74
3267 3732 1.228245 CCGGCTTGATGGGTATGGG 60.228 63.158 0.00 0.00 0.00 4.00
3268 3733 1.531748 CGGCTTGATGGGTATGGGT 59.468 57.895 0.00 0.00 0.00 4.51
3269 3734 0.819259 CGGCTTGATGGGTATGGGTG 60.819 60.000 0.00 0.00 0.00 4.61
3270 3735 0.468029 GGCTTGATGGGTATGGGTGG 60.468 60.000 0.00 0.00 0.00 4.61
3271 3736 0.258774 GCTTGATGGGTATGGGTGGT 59.741 55.000 0.00 0.00 0.00 4.16
3272 3737 2.023788 GCTTGATGGGTATGGGTGGTG 61.024 57.143 0.00 0.00 0.00 4.17
3273 3738 0.628522 TTGATGGGTATGGGTGGTGG 59.371 55.000 0.00 0.00 0.00 4.61
3274 3739 1.152756 GATGGGTATGGGTGGTGGC 60.153 63.158 0.00 0.00 0.00 5.01
3275 3740 1.932156 GATGGGTATGGGTGGTGGCA 61.932 60.000 0.00 0.00 0.00 4.92
3276 3741 1.513975 ATGGGTATGGGTGGTGGCAA 61.514 55.000 0.00 0.00 0.00 4.52
3277 3742 1.309688 GGGTATGGGTGGTGGCAAT 59.690 57.895 0.00 0.00 0.00 3.56
3278 3743 0.325203 GGGTATGGGTGGTGGCAATT 60.325 55.000 0.00 0.00 0.00 2.32
3279 3744 1.063567 GGGTATGGGTGGTGGCAATTA 60.064 52.381 0.00 0.00 0.00 1.40
3280 3745 2.425683 GGGTATGGGTGGTGGCAATTAT 60.426 50.000 0.00 0.00 0.00 1.28
3281 3746 2.890945 GGTATGGGTGGTGGCAATTATC 59.109 50.000 0.00 0.00 0.00 1.75
3282 3747 3.436470 GGTATGGGTGGTGGCAATTATCT 60.436 47.826 0.00 0.00 0.00 1.98
3283 3748 4.202524 GGTATGGGTGGTGGCAATTATCTA 60.203 45.833 0.00 0.00 0.00 1.98
3284 3749 3.576078 TGGGTGGTGGCAATTATCTAG 57.424 47.619 0.00 0.00 0.00 2.43
3285 3750 2.849943 TGGGTGGTGGCAATTATCTAGT 59.150 45.455 0.00 0.00 0.00 2.57
3286 3751 4.041464 TGGGTGGTGGCAATTATCTAGTA 58.959 43.478 0.00 0.00 0.00 1.82
3287 3752 4.141574 TGGGTGGTGGCAATTATCTAGTAC 60.142 45.833 0.00 0.00 0.00 2.73
3288 3753 4.102681 GGGTGGTGGCAATTATCTAGTACT 59.897 45.833 0.00 0.00 0.00 2.73
3289 3754 5.306160 GGGTGGTGGCAATTATCTAGTACTA 59.694 44.000 1.89 1.89 0.00 1.82
3290 3755 6.456501 GGTGGTGGCAATTATCTAGTACTAG 58.543 44.000 21.87 21.87 34.56 2.57
3291 3756 6.267014 GGTGGTGGCAATTATCTAGTACTAGA 59.733 42.308 29.96 29.96 45.24 2.43
3292 3757 7.201974 GGTGGTGGCAATTATCTAGTACTAGAA 60.202 40.741 31.11 19.13 44.44 2.10
3293 3758 7.868415 GTGGTGGCAATTATCTAGTACTAGAAG 59.132 40.741 31.11 20.10 44.44 2.85
3294 3759 7.783119 TGGTGGCAATTATCTAGTACTAGAAGA 59.217 37.037 31.11 23.10 44.44 2.87
3295 3760 8.639761 GGTGGCAATTATCTAGTACTAGAAGAA 58.360 37.037 31.11 26.47 44.44 2.52
3302 3767 8.818622 TTATCTAGTACTAGAAGAAAGTGGCA 57.181 34.615 31.11 8.96 44.44 4.92
3303 3768 7.719871 ATCTAGTACTAGAAGAAAGTGGCAA 57.280 36.000 31.11 8.78 44.44 4.52
3304 3769 7.719871 TCTAGTACTAGAAGAAAGTGGCAAT 57.280 36.000 26.83 0.00 39.08 3.56
3305 3770 7.548097 TCTAGTACTAGAAGAAAGTGGCAATG 58.452 38.462 26.83 0.00 39.08 2.82
3306 3771 6.360370 AGTACTAGAAGAAAGTGGCAATGA 57.640 37.500 0.00 0.00 0.00 2.57
3307 3772 6.951971 AGTACTAGAAGAAAGTGGCAATGAT 58.048 36.000 0.00 0.00 0.00 2.45
3308 3773 8.079211 AGTACTAGAAGAAAGTGGCAATGATA 57.921 34.615 0.00 0.00 0.00 2.15
3309 3774 8.709308 AGTACTAGAAGAAAGTGGCAATGATAT 58.291 33.333 0.00 0.00 0.00 1.63
3310 3775 9.982651 GTACTAGAAGAAAGTGGCAATGATATA 57.017 33.333 0.00 0.00 0.00 0.86
3312 3777 8.709308 ACTAGAAGAAAGTGGCAATGATATAGT 58.291 33.333 0.00 0.00 0.00 2.12
3348 3813 8.909708 TTTTCTTTCAGTTTCAGTGTATTGTG 57.090 30.769 0.00 0.00 0.00 3.33
3349 3814 6.060028 TCTTTCAGTTTCAGTGTATTGTGC 57.940 37.500 0.00 0.00 0.00 4.57
3350 3815 4.829064 TTCAGTTTCAGTGTATTGTGCC 57.171 40.909 0.00 0.00 0.00 5.01
3351 3816 4.085357 TCAGTTTCAGTGTATTGTGCCT 57.915 40.909 0.00 0.00 0.00 4.75
3352 3817 3.814842 TCAGTTTCAGTGTATTGTGCCTG 59.185 43.478 0.00 0.00 0.00 4.85
3353 3818 3.565482 CAGTTTCAGTGTATTGTGCCTGT 59.435 43.478 0.00 0.00 0.00 4.00
3354 3819 4.036734 CAGTTTCAGTGTATTGTGCCTGTT 59.963 41.667 0.00 0.00 0.00 3.16
3355 3820 5.238432 CAGTTTCAGTGTATTGTGCCTGTTA 59.762 40.000 0.00 0.00 0.00 2.41
3356 3821 5.470098 AGTTTCAGTGTATTGTGCCTGTTAG 59.530 40.000 0.00 0.00 0.00 2.34
3357 3822 4.882842 TCAGTGTATTGTGCCTGTTAGA 57.117 40.909 0.00 0.00 0.00 2.10
3358 3823 4.820897 TCAGTGTATTGTGCCTGTTAGAG 58.179 43.478 0.00 0.00 0.00 2.43
3359 3824 3.372206 CAGTGTATTGTGCCTGTTAGAGC 59.628 47.826 0.00 0.00 0.00 4.09
3360 3825 3.007940 AGTGTATTGTGCCTGTTAGAGCA 59.992 43.478 0.00 0.00 36.44 4.26
3361 3826 3.941483 GTGTATTGTGCCTGTTAGAGCAT 59.059 43.478 0.00 0.00 41.86 3.79
3362 3827 4.034510 GTGTATTGTGCCTGTTAGAGCATC 59.965 45.833 0.00 0.00 41.86 3.91
3374 3839 2.475666 GAGCATCTCCAACAGCCAC 58.524 57.895 0.00 0.00 0.00 5.01
3375 3840 1.364626 GAGCATCTCCAACAGCCACG 61.365 60.000 0.00 0.00 0.00 4.94
3376 3841 3.044059 GCATCTCCAACAGCCACGC 62.044 63.158 0.00 0.00 0.00 5.34
3377 3842 2.045926 ATCTCCAACAGCCACGCC 60.046 61.111 0.00 0.00 0.00 5.68
3378 3843 2.894257 ATCTCCAACAGCCACGCCA 61.894 57.895 0.00 0.00 0.00 5.69
3379 3844 2.410322 ATCTCCAACAGCCACGCCAA 62.410 55.000 0.00 0.00 0.00 4.52
3380 3845 2.124109 TCCAACAGCCACGCCAAA 60.124 55.556 0.00 0.00 0.00 3.28
3381 3846 2.027460 CCAACAGCCACGCCAAAC 59.973 61.111 0.00 0.00 0.00 2.93
3382 3847 2.489275 CCAACAGCCACGCCAAACT 61.489 57.895 0.00 0.00 0.00 2.66
3383 3848 1.169661 CCAACAGCCACGCCAAACTA 61.170 55.000 0.00 0.00 0.00 2.24
3384 3849 0.238289 CAACAGCCACGCCAAACTAG 59.762 55.000 0.00 0.00 0.00 2.57
3385 3850 1.515521 AACAGCCACGCCAAACTAGC 61.516 55.000 0.00 0.00 0.00 3.42
3386 3851 1.672356 CAGCCACGCCAAACTAGCT 60.672 57.895 0.00 0.00 0.00 3.32
3387 3852 1.073199 AGCCACGCCAAACTAGCTT 59.927 52.632 0.00 0.00 0.00 3.74
3388 3853 0.323629 AGCCACGCCAAACTAGCTTA 59.676 50.000 0.00 0.00 0.00 3.09
3490 3955 2.171725 GGGATCACACGCCGCTTAC 61.172 63.158 0.00 0.00 0.00 2.34
3501 3966 3.549467 CGCTTACTTGCTGCGTCA 58.451 55.556 0.00 0.00 44.00 4.35
3543 4008 2.357517 CGCCCACTCGCAACTTCT 60.358 61.111 0.00 0.00 0.00 2.85
3549 4016 1.270625 CCACTCGCAACTTCTAACCCA 60.271 52.381 0.00 0.00 0.00 4.51
3561 4028 3.338275 TAACCCACCATCCAGCCGC 62.338 63.158 0.00 0.00 0.00 6.53
4004 4489 5.324409 TGAGGCACTATTTTGTGGAGAATT 58.676 37.500 0.00 0.00 41.55 2.17
4029 4514 2.496899 TACCCGGAGTCGTACTTTCT 57.503 50.000 0.73 0.00 33.95 2.52
4060 4545 1.072331 AGGATGAGCACCGAGTTGTTT 59.928 47.619 0.00 0.00 0.00 2.83
4140 4626 2.498941 CCGGAGAGCTCGGGCATAA 61.499 63.158 11.40 0.00 41.99 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.363359 ACACGAAAGGTACGGAAACTCT 59.637 45.455 0.00 0.00 34.93 3.24
61 62 2.473984 CACACGAAAGGTACGGAAACTC 59.526 50.000 0.00 0.00 34.93 3.01
62 63 2.476821 CACACGAAAGGTACGGAAACT 58.523 47.619 0.00 0.00 34.93 2.66
63 64 1.070376 GCACACGAAAGGTACGGAAAC 60.070 52.381 0.00 0.00 34.93 2.78
66 67 1.005867 GGCACACGAAAGGTACGGA 60.006 57.895 0.00 0.00 34.93 4.69
68 69 2.030958 GGGGCACACGAAAGGTACG 61.031 63.158 0.00 0.00 0.00 3.67
69 70 2.030958 CGGGGCACACGAAAGGTAC 61.031 63.158 0.00 0.00 0.00 3.34
70 71 2.344500 CGGGGCACACGAAAGGTA 59.656 61.111 0.00 0.00 0.00 3.08
99 102 2.357517 CGTGGAGACAGGTGGTGC 60.358 66.667 0.00 0.00 44.46 5.01
120 123 2.036572 GGGTTTGGATTGGGCGGA 59.963 61.111 0.00 0.00 0.00 5.54
134 137 4.324991 GCGGGGAACTCGTTGGGT 62.325 66.667 0.00 0.00 0.00 4.51
168 177 2.954868 CACGTGACGGATAGCGCC 60.955 66.667 10.90 0.00 0.00 6.53
169 178 3.617538 GCACGTGACGGATAGCGC 61.618 66.667 22.23 0.00 0.00 5.92
170 179 3.312504 CGCACGTGACGGATAGCG 61.313 66.667 22.23 17.95 39.17 4.26
202 211 0.887387 TAGAGTGCAACCGGTTTGGC 60.887 55.000 19.55 19.73 43.94 4.52
220 229 6.395426 TTTTTCTCCCTTCGTAGCGATATA 57.605 37.500 0.00 0.00 35.23 0.86
221 230 4.931661 TTTTCTCCCTTCGTAGCGATAT 57.068 40.909 0.00 0.00 35.23 1.63
223 232 3.604875 TTTTTCTCCCTTCGTAGCGAT 57.395 42.857 0.00 0.00 35.23 4.58
224 233 3.194968 AGATTTTTCTCCCTTCGTAGCGA 59.805 43.478 0.00 0.00 0.00 4.93
225 234 3.522553 AGATTTTTCTCCCTTCGTAGCG 58.477 45.455 0.00 0.00 0.00 4.26
226 235 5.064071 CAGAAGATTTTTCTCCCTTCGTAGC 59.936 44.000 0.00 0.00 39.78 3.58
235 244 4.780275 AAGCAGCAGAAGATTTTTCTCC 57.220 40.909 0.00 0.00 0.00 3.71
253 262 3.978718 AGCAACAGTCTGAAGAAAAGC 57.021 42.857 6.91 0.00 0.00 3.51
308 319 2.082629 TTGGCTCGCAACTCGTCAGA 62.083 55.000 0.00 0.00 39.67 3.27
315 326 2.217038 TCCTCCTTGGCTCGCAACT 61.217 57.895 0.00 0.00 35.26 3.16
322 344 0.842030 TGATGGTGTCCTCCTTGGCT 60.842 55.000 0.00 0.00 35.26 4.75
360 382 7.229308 CAAATTTCCTCATCCAGATATCCTCA 58.771 38.462 0.00 0.00 0.00 3.86
361 383 6.150809 GCAAATTTCCTCATCCAGATATCCTC 59.849 42.308 0.00 0.00 0.00 3.71
362 384 6.008960 GCAAATTTCCTCATCCAGATATCCT 58.991 40.000 0.00 0.00 0.00 3.24
404 426 0.806492 GCGTCGGAGGGATTGAACTC 60.806 60.000 0.00 0.00 0.00 3.01
405 427 1.218316 GCGTCGGAGGGATTGAACT 59.782 57.895 0.00 0.00 0.00 3.01
406 428 2.165301 CGCGTCGGAGGGATTGAAC 61.165 63.158 0.00 0.00 0.00 3.18
448 492 2.286523 CCCGTTCCTGTCTGCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
471 515 2.345760 TTAGGTCTCCGTGGGACGC 61.346 63.158 0.00 0.00 40.91 5.19
475 519 3.793559 CAATTAGTTAGGTCTCCGTGGG 58.206 50.000 0.00 0.00 0.00 4.61
509 556 8.243426 GTGGTGTCAGCTTTATTGATTGATTTA 58.757 33.333 3.30 0.00 0.00 1.40
510 557 7.092716 GTGGTGTCAGCTTTATTGATTGATTT 58.907 34.615 3.30 0.00 0.00 2.17
535 585 1.202973 CTAATCGCTCGTCACGCCTG 61.203 60.000 0.00 0.00 0.00 4.85
536 586 1.064296 CTAATCGCTCGTCACGCCT 59.936 57.895 0.00 0.00 0.00 5.52
541 591 0.179137 CACTGGCTAATCGCTCGTCA 60.179 55.000 0.00 0.00 39.13 4.35
543 593 0.747255 ATCACTGGCTAATCGCTCGT 59.253 50.000 0.00 0.00 39.13 4.18
544 594 1.269257 TGATCACTGGCTAATCGCTCG 60.269 52.381 0.00 0.00 39.13 5.03
546 596 1.536922 CGTGATCACTGGCTAATCGCT 60.537 52.381 22.95 0.00 39.13 4.93
548 598 1.491670 CCGTGATCACTGGCTAATCG 58.508 55.000 22.95 6.92 0.00 3.34
555 620 1.028330 AGCAATGCCGTGATCACTGG 61.028 55.000 22.95 23.48 0.00 4.00
666 738 1.708993 AAGCAGAACCCAGAGTGCCA 61.709 55.000 0.00 0.00 36.54 4.92
669 741 1.338579 GGAGAAGCAGAACCCAGAGTG 60.339 57.143 0.00 0.00 0.00 3.51
684 761 3.072915 TGCAGGAGAAAAGACATGGAGAA 59.927 43.478 0.00 0.00 0.00 2.87
688 765 2.227388 GTGTGCAGGAGAAAAGACATGG 59.773 50.000 0.00 0.00 0.00 3.66
695 772 1.134521 ACGACAGTGTGCAGGAGAAAA 60.135 47.619 0.00 0.00 0.00 2.29
751 831 1.990563 CCTTCGCAGTTACAACTACGG 59.009 52.381 13.26 0.87 43.96 4.02
758 838 3.057033 GGAGTAGTTCCTTCGCAGTTACA 60.057 47.826 0.00 0.00 43.16 2.41
802 1099 1.055040 GGCAGATAGATGGCCTCACT 58.945 55.000 3.32 3.07 44.32 3.41
972 1294 2.434185 GTGCCTTGCGATGTCCGA 60.434 61.111 0.00 0.00 41.76 4.55
988 1310 1.804326 GAACTGATACGGCGTGCGT 60.804 57.895 24.86 10.96 0.00 5.24
1013 1335 4.953868 TGCTACCGTTGCGCGTGT 62.954 61.111 8.43 0.00 39.32 4.49
1014 1336 3.420222 GATGCTACCGTTGCGCGTG 62.420 63.158 8.43 0.00 39.32 5.34
1015 1337 3.186047 GATGCTACCGTTGCGCGT 61.186 61.111 8.43 0.00 39.32 6.01
1017 1339 4.575245 GCGATGCTACCGTTGCGC 62.575 66.667 0.00 0.00 37.60 6.09
1059 1391 1.806542 TGAGATCAAAGACAAAGCGCC 59.193 47.619 2.29 0.00 0.00 6.53
1062 1394 3.124297 CGGACTGAGATCAAAGACAAAGC 59.876 47.826 0.00 0.00 0.00 3.51
1071 1403 0.335019 TCCCTCCGGACTGAGATCAA 59.665 55.000 0.00 0.00 34.11 2.57
1072 1404 0.335019 TTCCCTCCGGACTGAGATCA 59.665 55.000 0.00 0.00 38.14 2.92
1073 1405 1.036707 CTTCCCTCCGGACTGAGATC 58.963 60.000 0.00 0.00 38.14 2.75
1076 1408 2.060980 CCCTTCCCTCCGGACTGAG 61.061 68.421 0.00 0.00 38.14 3.35
1077 1409 1.886730 ATCCCTTCCCTCCGGACTGA 61.887 60.000 0.00 0.00 38.14 3.41
1078 1410 0.983378 AATCCCTTCCCTCCGGACTG 60.983 60.000 0.00 0.00 38.14 3.51
1079 1411 0.983378 CAATCCCTTCCCTCCGGACT 60.983 60.000 0.00 0.00 38.14 3.85
1080 1412 1.527370 CAATCCCTTCCCTCCGGAC 59.473 63.158 0.00 0.00 38.14 4.79
1081 1413 1.692749 CCAATCCCTTCCCTCCGGA 60.693 63.158 2.93 2.93 35.88 5.14
1082 1414 1.984288 GACCAATCCCTTCCCTCCGG 61.984 65.000 0.00 0.00 0.00 5.14
1083 1415 1.527370 GACCAATCCCTTCCCTCCG 59.473 63.158 0.00 0.00 0.00 4.63
1084 1416 0.981277 TCGACCAATCCCTTCCCTCC 60.981 60.000 0.00 0.00 0.00 4.30
1089 1421 4.542075 GGCTCGACCAATCCCTTC 57.458 61.111 0.00 0.00 38.86 3.46
1098 1430 3.050275 GCAAGTGGTGGCTCGACC 61.050 66.667 0.00 0.00 39.84 4.79
1105 1437 2.360350 ATCGCTGGCAAGTGGTGG 60.360 61.111 0.81 0.00 34.50 4.61
1193 1528 3.055719 CATGGTGTTTCCGGCGCT 61.056 61.111 7.64 0.00 39.52 5.92
1208 1543 2.373169 TGGAGCAGTTGAAGAACCTCAT 59.627 45.455 0.00 0.00 31.81 2.90
1209 1544 1.768275 TGGAGCAGTTGAAGAACCTCA 59.232 47.619 0.00 0.00 31.81 3.86
1234 1569 2.838225 CCGGCCGTACCTCTGGAT 60.838 66.667 26.12 0.00 35.61 3.41
1248 1583 0.671251 GAGTGACAGATAGGAGCCGG 59.329 60.000 0.00 0.00 0.00 6.13
1249 1584 0.671251 GGAGTGACAGATAGGAGCCG 59.329 60.000 0.00 0.00 0.00 5.52
1250 1585 0.671251 CGGAGTGACAGATAGGAGCC 59.329 60.000 0.00 0.00 0.00 4.70
1272 1607 1.990060 ACATAGGCGGTGACTGGCT 60.990 57.895 24.21 24.21 41.18 4.75
1274 1609 1.815421 GCACATAGGCGGTGACTGG 60.815 63.158 10.44 0.00 38.54 4.00
1283 1618 3.303791 GGCATAAAACTACGCACATAGGC 60.304 47.826 0.00 0.00 0.00 3.93
1285 1620 4.808895 TCAGGCATAAAACTACGCACATAG 59.191 41.667 0.00 0.00 0.00 2.23
1286 1621 4.760878 TCAGGCATAAAACTACGCACATA 58.239 39.130 0.00 0.00 0.00 2.29
1287 1622 3.605634 TCAGGCATAAAACTACGCACAT 58.394 40.909 0.00 0.00 0.00 3.21
1288 1623 3.046968 TCAGGCATAAAACTACGCACA 57.953 42.857 0.00 0.00 0.00 4.57
1289 1624 4.588278 GATTCAGGCATAAAACTACGCAC 58.412 43.478 0.00 0.00 0.00 5.34
1290 1625 3.308595 CGATTCAGGCATAAAACTACGCA 59.691 43.478 0.00 0.00 0.00 5.24
1291 1626 3.844943 GCGATTCAGGCATAAAACTACGC 60.845 47.826 0.00 0.00 35.06 4.42
1292 1627 3.601586 CGCGATTCAGGCATAAAACTACG 60.602 47.826 0.00 0.00 0.00 3.51
1293 1628 3.308866 ACGCGATTCAGGCATAAAACTAC 59.691 43.478 15.93 0.00 0.00 2.73
1294 1629 3.308595 CACGCGATTCAGGCATAAAACTA 59.691 43.478 15.93 0.00 0.00 2.24
1295 1630 2.095853 CACGCGATTCAGGCATAAAACT 59.904 45.455 15.93 0.00 0.00 2.66
1296 1631 2.095213 TCACGCGATTCAGGCATAAAAC 59.905 45.455 15.93 0.00 0.00 2.43
1297 1632 2.351418 CTCACGCGATTCAGGCATAAAA 59.649 45.455 15.93 0.00 0.00 1.52
1298 1633 1.933181 CTCACGCGATTCAGGCATAAA 59.067 47.619 15.93 0.00 0.00 1.40
1299 1634 1.570813 CTCACGCGATTCAGGCATAA 58.429 50.000 15.93 0.00 0.00 1.90
1300 1635 0.875908 GCTCACGCGATTCAGGCATA 60.876 55.000 15.93 0.00 0.00 3.14
1301 1636 2.176273 GCTCACGCGATTCAGGCAT 61.176 57.895 15.93 0.00 0.00 4.40
1302 1637 2.815211 GCTCACGCGATTCAGGCA 60.815 61.111 15.93 0.00 0.00 4.75
1303 1638 2.510238 AGCTCACGCGATTCAGGC 60.510 61.111 15.93 8.11 42.32 4.85
1304 1639 1.153765 TGAGCTCACGCGATTCAGG 60.154 57.895 15.93 0.00 42.32 3.86
1485 1825 1.202651 ACGAAGTTGTTCTCCAGGGTG 60.203 52.381 0.00 0.00 37.78 4.61
1649 1989 5.608860 TGGAGTATTTCAAACCCCCATTTTT 59.391 36.000 0.00 0.00 0.00 1.94
1691 2063 4.726021 GCATTTCAGTATCGCAGTGAACAG 60.726 45.833 0.00 4.66 44.52 3.16
1700 2072 2.288729 TGCTGATGCATTTCAGTATCGC 59.711 45.455 16.63 5.59 45.31 4.58
1714 2086 2.763933 AGTGACAGTGAGTTGCTGATG 58.236 47.619 0.00 0.00 37.40 3.07
1741 2113 2.347731 TCACGGCGCATGTAAATAACA 58.652 42.857 10.83 0.00 43.86 2.41
1754 2126 2.099062 GCAGCAAGAATCACGGCG 59.901 61.111 4.80 4.80 0.00 6.46
1757 2129 0.674581 TCCCTGCAGCAAGAATCACG 60.675 55.000 8.66 0.00 0.00 4.35
1768 2140 0.113190 ACCCCTTTCTTTCCCTGCAG 59.887 55.000 6.78 6.78 0.00 4.41
1809 2181 2.472695 TGGGAACAAACTCAGATCGG 57.527 50.000 0.00 0.00 37.44 4.18
1851 2223 5.717178 AGAGGAAGAGCAATACAACTACAGA 59.283 40.000 0.00 0.00 0.00 3.41
1852 2224 5.971763 AGAGGAAGAGCAATACAACTACAG 58.028 41.667 0.00 0.00 0.00 2.74
1854 2226 8.035984 AGTAAAGAGGAAGAGCAATACAACTAC 58.964 37.037 0.00 0.00 0.00 2.73
1855 2227 8.135382 AGTAAAGAGGAAGAGCAATACAACTA 57.865 34.615 0.00 0.00 0.00 2.24
1856 2228 7.010339 AGTAAAGAGGAAGAGCAATACAACT 57.990 36.000 0.00 0.00 0.00 3.16
1857 2229 7.010645 GCTAGTAAAGAGGAAGAGCAATACAAC 59.989 40.741 0.00 0.00 0.00 3.32
1858 2230 7.042335 GCTAGTAAAGAGGAAGAGCAATACAA 58.958 38.462 0.00 0.00 0.00 2.41
1859 2231 6.407074 GGCTAGTAAAGAGGAAGAGCAATACA 60.407 42.308 0.00 0.00 0.00 2.29
1860 2232 5.986741 GGCTAGTAAAGAGGAAGAGCAATAC 59.013 44.000 0.00 0.00 0.00 1.89
1861 2233 5.661312 TGGCTAGTAAAGAGGAAGAGCAATA 59.339 40.000 0.00 0.00 0.00 1.90
1862 2234 4.471386 TGGCTAGTAAAGAGGAAGAGCAAT 59.529 41.667 0.00 0.00 0.00 3.56
1863 2235 3.838317 TGGCTAGTAAAGAGGAAGAGCAA 59.162 43.478 0.00 0.00 0.00 3.91
1864 2236 3.195825 GTGGCTAGTAAAGAGGAAGAGCA 59.804 47.826 0.00 0.00 0.00 4.26
1865 2237 3.449377 AGTGGCTAGTAAAGAGGAAGAGC 59.551 47.826 0.00 0.00 0.00 4.09
1867 2239 4.673968 TCAGTGGCTAGTAAAGAGGAAGA 58.326 43.478 0.00 0.00 0.00 2.87
1868 2240 5.407407 TTCAGTGGCTAGTAAAGAGGAAG 57.593 43.478 0.00 0.00 0.00 3.46
1869 2241 5.818678 TTTCAGTGGCTAGTAAAGAGGAA 57.181 39.130 0.00 0.00 0.00 3.36
1870 2242 5.483937 TGATTTCAGTGGCTAGTAAAGAGGA 59.516 40.000 0.00 0.00 0.00 3.71
1871 2243 5.734720 TGATTTCAGTGGCTAGTAAAGAGG 58.265 41.667 0.00 0.00 0.00 3.69
1872 2244 6.900568 CTGATTTCAGTGGCTAGTAAAGAG 57.099 41.667 0.00 0.00 39.09 2.85
1898 2270 6.202954 CGGATATTTTATCACCAGGTTCAGAC 59.797 42.308 0.00 0.00 0.00 3.51
1899 2271 6.126883 ACGGATATTTTATCACCAGGTTCAGA 60.127 38.462 0.00 0.00 0.00 3.27
1900 2272 6.055588 ACGGATATTTTATCACCAGGTTCAG 58.944 40.000 0.00 0.00 0.00 3.02
1901 2273 5.996644 ACGGATATTTTATCACCAGGTTCA 58.003 37.500 0.00 0.00 0.00 3.18
1902 2274 7.215085 AGTACGGATATTTTATCACCAGGTTC 58.785 38.462 0.00 0.00 0.00 3.62
1903 2275 7.133133 AGTACGGATATTTTATCACCAGGTT 57.867 36.000 0.00 0.00 0.00 3.50
1905 2277 7.170998 GTGAAGTACGGATATTTTATCACCAGG 59.829 40.741 0.00 0.00 31.00 4.45
1908 2280 7.924412 TCAGTGAAGTACGGATATTTTATCACC 59.076 37.037 0.00 0.00 36.26 4.02
1909 2281 8.867112 TCAGTGAAGTACGGATATTTTATCAC 57.133 34.615 0.00 0.00 35.95 3.06
1910 2282 9.309516 GTTCAGTGAAGTACGGATATTTTATCA 57.690 33.333 5.62 0.00 33.48 2.15
1915 2287 6.931838 TCAGTTCAGTGAAGTACGGATATTT 58.068 36.000 12.86 0.00 33.48 1.40
1918 2290 5.678871 GCATCAGTTCAGTGAAGTACGGATA 60.679 44.000 12.86 0.00 33.48 2.59
1922 2294 3.579709 AGCATCAGTTCAGTGAAGTACG 58.420 45.455 12.86 5.97 0.00 3.67
1926 2298 5.065731 GGGAAATAGCATCAGTTCAGTGAAG 59.934 44.000 5.62 0.00 0.00 3.02
1946 2324 4.380843 TCCTGCACAAAGATTTAGGGAA 57.619 40.909 0.00 0.00 0.00 3.97
1958 2336 3.228188 ACTTGAATCCTTCCTGCACAA 57.772 42.857 0.00 0.00 0.00 3.33
2091 2469 3.551046 CGAGACCTACCTCCATTTGATCG 60.551 52.174 0.00 0.00 0.00 3.69
2133 2511 3.622166 TTATCCCTTCTGACCGAAACC 57.378 47.619 0.00 0.00 0.00 3.27
2143 2521 7.418025 CGAACTTCCTCAGTTATTATCCCTTCT 60.418 40.741 0.00 0.00 46.53 2.85
2161 2539 2.415512 GCCATTAGACACACGAACTTCC 59.584 50.000 0.00 0.00 0.00 3.46
2174 2552 3.114606 TGTTCAGGGAGATGCCATTAGA 58.885 45.455 0.00 0.00 38.95 2.10
2185 2563 1.271054 CCTGTCAGGTTGTTCAGGGAG 60.271 57.143 11.09 0.00 42.38 4.30
2249 2627 1.374252 CGTGGGGAGTTTCCAGACG 60.374 63.158 0.00 1.23 38.64 4.18
2273 2651 2.429610 GTGCGTCCTTACCTCCTGAATA 59.570 50.000 0.00 0.00 0.00 1.75
2303 2681 2.398036 CGCCGTTGTATCGCCAAC 59.602 61.111 0.00 0.00 41.01 3.77
2305 2683 2.223200 TTACCGCCGTTGTATCGCCA 62.223 55.000 0.00 0.00 0.00 5.69
2317 2695 2.478894 CGACATACCATGAATTACCGCC 59.521 50.000 0.00 0.00 0.00 6.13
2324 2702 4.811024 CAGTAACAGCGACATACCATGAAT 59.189 41.667 0.00 0.00 0.00 2.57
2325 2703 4.081917 TCAGTAACAGCGACATACCATGAA 60.082 41.667 0.00 0.00 0.00 2.57
2326 2704 3.445805 TCAGTAACAGCGACATACCATGA 59.554 43.478 0.00 0.00 0.00 3.07
2327 2705 3.780902 TCAGTAACAGCGACATACCATG 58.219 45.455 0.00 0.00 0.00 3.66
2329 2707 3.845178 CTTCAGTAACAGCGACATACCA 58.155 45.455 0.00 0.00 0.00 3.25
2331 2709 3.250744 TGCTTCAGTAACAGCGACATAC 58.749 45.455 0.00 0.00 39.04 2.39
2332 2710 3.586100 TGCTTCAGTAACAGCGACATA 57.414 42.857 0.00 0.00 39.04 2.29
2361 2743 3.234353 TCTTCTGACTGCAAGAGGAAGA 58.766 45.455 13.96 13.96 40.59 2.87
2362 2744 3.674528 TCTTCTGACTGCAAGAGGAAG 57.325 47.619 10.82 10.82 38.02 3.46
2363 2745 4.422073 TTTCTTCTGACTGCAAGAGGAA 57.578 40.909 7.21 7.21 37.43 3.36
2389 2771 1.457643 CTCCCTGATGGCTCCCGTA 60.458 63.158 0.00 0.00 0.00 4.02
2404 2786 1.003696 CCTGTTTCTTCCTGGACCTCC 59.996 57.143 0.00 0.00 0.00 4.30
2453 2850 3.048337 ACCAATCCTCGCGAAAAAGTA 57.952 42.857 11.33 0.00 0.00 2.24
2463 2860 3.338249 ACACATTCAGAACCAATCCTCG 58.662 45.455 0.00 0.00 0.00 4.63
2492 2890 1.003355 AACCTGCACCGATCACCAG 60.003 57.895 0.00 0.00 0.00 4.00
2501 2899 1.609208 ATTCAGTGTCAACCTGCACC 58.391 50.000 0.00 0.00 36.35 5.01
2534 2932 2.163818 TGAGTGTTTACCTGAAGGCG 57.836 50.000 0.00 0.00 39.32 5.52
2561 2959 2.410053 CAGTTTCAGAGTTACTGCGCTC 59.590 50.000 9.73 0.00 45.38 5.03
2752 3166 4.216257 CAGGTGTAGTTTTGAAGATGGTGG 59.784 45.833 0.00 0.00 0.00 4.61
2780 3194 7.308782 ACCAAAGATTGTATCGATGAACTTC 57.691 36.000 8.54 1.51 0.00 3.01
2781 3195 6.316390 GGACCAAAGATTGTATCGATGAACTT 59.684 38.462 8.54 4.04 0.00 2.66
2782 3196 5.817816 GGACCAAAGATTGTATCGATGAACT 59.182 40.000 8.54 0.00 0.00 3.01
2783 3197 5.276868 CGGACCAAAGATTGTATCGATGAAC 60.277 44.000 8.54 0.00 0.00 3.18
2784 3198 4.808895 CGGACCAAAGATTGTATCGATGAA 59.191 41.667 8.54 0.84 0.00 2.57
2787 3201 3.386726 TCCGGACCAAAGATTGTATCGAT 59.613 43.478 0.00 2.16 0.00 3.59
2788 3202 2.761767 TCCGGACCAAAGATTGTATCGA 59.238 45.455 0.00 0.00 0.00 3.59
2789 3203 3.123804 CTCCGGACCAAAGATTGTATCG 58.876 50.000 0.00 0.00 0.00 2.92
2790 3204 4.138487 ACTCCGGACCAAAGATTGTATC 57.862 45.455 0.00 0.00 0.00 2.24
2791 3205 5.602978 AGATACTCCGGACCAAAGATTGTAT 59.397 40.000 0.00 3.22 0.00 2.29
2794 3212 4.408182 AGATACTCCGGACCAAAGATTG 57.592 45.455 0.00 0.00 0.00 2.67
2797 3215 3.618997 GCAAAGATACTCCGGACCAAAGA 60.619 47.826 0.00 0.00 0.00 2.52
2801 3219 1.568504 AGCAAAGATACTCCGGACCA 58.431 50.000 0.00 0.00 0.00 4.02
2805 3223 4.755411 TCAGTAAAGCAAAGATACTCCGG 58.245 43.478 0.00 0.00 0.00 5.14
2843 3261 1.269448 ACTGCACCAATTAAAGGCACG 59.731 47.619 0.00 0.00 0.00 5.34
3090 3547 0.971447 AACGGTAGAGGTCCCAGAGC 60.971 60.000 0.00 0.00 0.00 4.09
3091 3548 1.558233 AAACGGTAGAGGTCCCAGAG 58.442 55.000 0.00 0.00 0.00 3.35
3092 3549 2.622452 CCTAAACGGTAGAGGTCCCAGA 60.622 54.545 1.04 0.00 0.00 3.86
3093 3550 1.755380 CCTAAACGGTAGAGGTCCCAG 59.245 57.143 1.04 0.00 0.00 4.45
3095 3552 2.149973 TCCTAAACGGTAGAGGTCCC 57.850 55.000 7.82 0.00 0.00 4.46
3097 3554 4.691175 GGAATTCCTAAACGGTAGAGGTC 58.309 47.826 17.73 0.45 0.00 3.85
3098 3555 3.131755 CGGAATTCCTAAACGGTAGAGGT 59.868 47.826 22.05 0.00 0.00 3.85
3100 3557 3.121544 GCGGAATTCCTAAACGGTAGAG 58.878 50.000 22.05 3.29 0.00 2.43
3101 3558 2.480073 CGCGGAATTCCTAAACGGTAGA 60.480 50.000 22.05 0.00 0.00 2.59
3103 3560 1.471327 CCGCGGAATTCCTAAACGGTA 60.471 52.381 24.07 0.00 33.88 4.02
3109 3566 3.264104 CTTTGTACCGCGGAATTCCTAA 58.736 45.455 35.90 14.99 0.00 2.69
3114 3571 2.774687 AGAACTTTGTACCGCGGAATT 58.225 42.857 35.90 12.99 0.00 2.17
3115 3572 2.467566 AGAACTTTGTACCGCGGAAT 57.532 45.000 35.90 13.91 0.00 3.01
3118 3575 2.358939 AGTAGAACTTTGTACCGCGG 57.641 50.000 26.86 26.86 0.00 6.46
3119 3576 2.850647 GCTAGTAGAACTTTGTACCGCG 59.149 50.000 0.00 0.00 0.00 6.46
3125 3582 4.938226 GCCTTGATGCTAGTAGAACTTTGT 59.062 41.667 0.00 0.00 0.00 2.83
3133 3590 2.158842 AGGCTTGCCTTGATGCTAGTAG 60.159 50.000 8.56 0.00 36.62 2.57
3136 3593 1.134159 AGAGGCTTGCCTTGATGCTAG 60.134 52.381 15.92 0.00 37.20 3.42
3137 3594 0.914644 AGAGGCTTGCCTTGATGCTA 59.085 50.000 15.92 0.00 0.00 3.49
3139 3596 0.964358 ACAGAGGCTTGCCTTGATGC 60.964 55.000 15.92 2.46 0.00 3.91
3140 3597 2.408271 TACAGAGGCTTGCCTTGATG 57.592 50.000 15.92 15.91 0.00 3.07
3142 3599 5.307976 ACATATATACAGAGGCTTGCCTTGA 59.692 40.000 15.92 2.29 0.00 3.02
3143 3600 5.410746 CACATATATACAGAGGCTTGCCTTG 59.589 44.000 15.92 16.26 0.00 3.61
3144 3601 5.072329 ACACATATATACAGAGGCTTGCCTT 59.928 40.000 15.92 2.58 0.00 4.35
3164 3629 8.251026 CCATGTCTAATTACAGTCTTCTACACA 58.749 37.037 0.00 0.00 31.70 3.72
3192 3657 1.112113 GACAGAGCTAATCCGTCCCA 58.888 55.000 0.00 0.00 0.00 4.37
3200 3665 3.868757 TTGCTACACGACAGAGCTAAT 57.131 42.857 0.00 0.00 37.12 1.73
3222 3687 7.839705 TCCACTGAAGAATAGGAGTAGTACATT 59.160 37.037 2.52 0.00 0.00 2.71
3223 3688 7.285858 GTCCACTGAAGAATAGGAGTAGTACAT 59.714 40.741 2.52 0.00 0.00 2.29
3224 3689 6.602406 GTCCACTGAAGAATAGGAGTAGTACA 59.398 42.308 2.52 0.00 0.00 2.90
3225 3690 6.039605 GGTCCACTGAAGAATAGGAGTAGTAC 59.960 46.154 0.00 0.00 0.00 2.73
3226 3691 6.127793 GGTCCACTGAAGAATAGGAGTAGTA 58.872 44.000 0.00 0.00 0.00 1.82
3227 3692 4.957327 GGTCCACTGAAGAATAGGAGTAGT 59.043 45.833 0.00 0.00 0.00 2.73
3228 3693 4.036971 CGGTCCACTGAAGAATAGGAGTAG 59.963 50.000 0.00 0.00 0.00 2.57
3233 3698 1.473434 GCCGGTCCACTGAAGAATAGG 60.473 57.143 1.90 0.00 0.00 2.57
3240 3705 0.321564 CATCAAGCCGGTCCACTGAA 60.322 55.000 1.90 0.00 0.00 3.02
3247 3712 0.535102 CCATACCCATCAAGCCGGTC 60.535 60.000 1.90 0.00 0.00 4.79
3253 3718 1.410083 CCACCACCCATACCCATCAAG 60.410 57.143 0.00 0.00 0.00 3.02
3254 3719 0.628522 CCACCACCCATACCCATCAA 59.371 55.000 0.00 0.00 0.00 2.57
3255 3720 1.932156 GCCACCACCCATACCCATCA 61.932 60.000 0.00 0.00 0.00 3.07
3256 3721 1.152756 GCCACCACCCATACCCATC 60.153 63.158 0.00 0.00 0.00 3.51
3257 3722 1.513975 TTGCCACCACCCATACCCAT 61.514 55.000 0.00 0.00 0.00 4.00
3258 3723 1.513975 ATTGCCACCACCCATACCCA 61.514 55.000 0.00 0.00 0.00 4.51
3259 3724 0.325203 AATTGCCACCACCCATACCC 60.325 55.000 0.00 0.00 0.00 3.69
3260 3725 2.445682 TAATTGCCACCACCCATACC 57.554 50.000 0.00 0.00 0.00 2.73
3261 3726 3.832527 AGATAATTGCCACCACCCATAC 58.167 45.455 0.00 0.00 0.00 2.39
3262 3727 4.663120 ACTAGATAATTGCCACCACCCATA 59.337 41.667 0.00 0.00 0.00 2.74
3263 3728 3.463329 ACTAGATAATTGCCACCACCCAT 59.537 43.478 0.00 0.00 0.00 4.00
3264 3729 2.849943 ACTAGATAATTGCCACCACCCA 59.150 45.455 0.00 0.00 0.00 4.51
3265 3730 3.577805 ACTAGATAATTGCCACCACCC 57.422 47.619 0.00 0.00 0.00 4.61
3266 3731 5.291905 AGTACTAGATAATTGCCACCACC 57.708 43.478 0.00 0.00 0.00 4.61
3267 3732 7.286215 TCTAGTACTAGATAATTGCCACCAC 57.714 40.000 25.58 0.00 37.28 4.16
3268 3733 7.783119 TCTTCTAGTACTAGATAATTGCCACCA 59.217 37.037 28.79 11.67 41.37 4.17
3269 3734 8.179509 TCTTCTAGTACTAGATAATTGCCACC 57.820 38.462 28.79 0.00 41.37 4.61
3276 3741 9.422681 TGCCACTTTCTTCTAGTACTAGATAAT 57.577 33.333 28.79 12.47 41.37 1.28
3277 3742 8.818622 TGCCACTTTCTTCTAGTACTAGATAA 57.181 34.615 28.79 22.63 41.37 1.75
3278 3743 8.818622 TTGCCACTTTCTTCTAGTACTAGATA 57.181 34.615 28.79 18.89 41.37 1.98
3279 3744 7.719871 TTGCCACTTTCTTCTAGTACTAGAT 57.280 36.000 28.79 13.36 41.37 1.98
3280 3745 7.396339 TCATTGCCACTTTCTTCTAGTACTAGA 59.604 37.037 25.58 25.58 40.17 2.43
3281 3746 7.548097 TCATTGCCACTTTCTTCTAGTACTAG 58.452 38.462 21.87 21.87 34.56 2.57
3282 3747 7.476540 TCATTGCCACTTTCTTCTAGTACTA 57.523 36.000 1.89 1.89 0.00 1.82
3283 3748 6.360370 TCATTGCCACTTTCTTCTAGTACT 57.640 37.500 0.00 0.00 0.00 2.73
3284 3749 8.894768 ATATCATTGCCACTTTCTTCTAGTAC 57.105 34.615 0.00 0.00 0.00 2.73
3286 3751 8.709308 ACTATATCATTGCCACTTTCTTCTAGT 58.291 33.333 0.00 0.00 0.00 2.57
3322 3787 9.520204 CACAATACACTGAAACTGAAAGAAAAT 57.480 29.630 0.00 0.00 37.43 1.82
3323 3788 7.487829 GCACAATACACTGAAACTGAAAGAAAA 59.512 33.333 0.00 0.00 37.43 2.29
3324 3789 6.972328 GCACAATACACTGAAACTGAAAGAAA 59.028 34.615 0.00 0.00 37.43 2.52
3325 3790 6.459573 GGCACAATACACTGAAACTGAAAGAA 60.460 38.462 0.00 0.00 37.43 2.52
3326 3791 5.008613 GGCACAATACACTGAAACTGAAAGA 59.991 40.000 0.00 0.00 37.43 2.52
3327 3792 5.009010 AGGCACAATACACTGAAACTGAAAG 59.991 40.000 0.00 0.00 42.29 2.62
3328 3793 4.887071 AGGCACAATACACTGAAACTGAAA 59.113 37.500 0.00 0.00 0.00 2.69
3329 3794 4.275689 CAGGCACAATACACTGAAACTGAA 59.724 41.667 0.00 0.00 32.86 3.02
3330 3795 3.814842 CAGGCACAATACACTGAAACTGA 59.185 43.478 0.00 0.00 32.86 3.41
3331 3796 3.565482 ACAGGCACAATACACTGAAACTG 59.435 43.478 0.00 0.00 35.08 3.16
3332 3797 3.820557 ACAGGCACAATACACTGAAACT 58.179 40.909 0.00 0.00 35.08 2.66
3333 3798 4.568152 AACAGGCACAATACACTGAAAC 57.432 40.909 0.00 0.00 35.08 2.78
3334 3799 5.616270 TCTAACAGGCACAATACACTGAAA 58.384 37.500 0.00 0.00 35.08 2.69
3335 3800 5.222079 TCTAACAGGCACAATACACTGAA 57.778 39.130 0.00 0.00 35.08 3.02
3336 3801 4.820897 CTCTAACAGGCACAATACACTGA 58.179 43.478 0.00 0.00 35.08 3.41
3337 3802 3.372206 GCTCTAACAGGCACAATACACTG 59.628 47.826 0.00 0.00 37.01 3.66
3338 3803 3.007940 TGCTCTAACAGGCACAATACACT 59.992 43.478 0.00 0.00 33.23 3.55
3339 3804 3.334691 TGCTCTAACAGGCACAATACAC 58.665 45.455 0.00 0.00 33.23 2.90
3340 3805 3.694043 TGCTCTAACAGGCACAATACA 57.306 42.857 0.00 0.00 33.23 2.29
3341 3806 4.446371 AGATGCTCTAACAGGCACAATAC 58.554 43.478 0.00 0.00 41.39 1.89
3342 3807 4.443457 GGAGATGCTCTAACAGGCACAATA 60.443 45.833 0.00 0.00 41.39 1.90
3343 3808 3.539604 GAGATGCTCTAACAGGCACAAT 58.460 45.455 0.00 0.00 41.39 2.71
3344 3809 2.355108 GGAGATGCTCTAACAGGCACAA 60.355 50.000 0.00 0.00 41.39 3.33
3345 3810 1.208052 GGAGATGCTCTAACAGGCACA 59.792 52.381 0.00 0.00 41.39 4.57
3346 3811 1.208052 TGGAGATGCTCTAACAGGCAC 59.792 52.381 0.00 0.00 41.39 5.01
3347 3812 1.571955 TGGAGATGCTCTAACAGGCA 58.428 50.000 0.00 0.00 42.80 4.75
3348 3813 2.284190 GTTGGAGATGCTCTAACAGGC 58.716 52.381 15.79 0.00 46.43 4.85
3353 3818 1.908619 TGGCTGTTGGAGATGCTCTAA 59.091 47.619 0.00 0.00 0.00 2.10
3354 3819 1.208052 GTGGCTGTTGGAGATGCTCTA 59.792 52.381 0.00 0.00 0.00 2.43
3355 3820 0.035630 GTGGCTGTTGGAGATGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
3356 3821 1.364626 CGTGGCTGTTGGAGATGCTC 61.365 60.000 0.00 0.00 0.00 4.26
3357 3822 1.376424 CGTGGCTGTTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
3358 3823 3.044059 GCGTGGCTGTTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
3359 3824 2.401766 GGCGTGGCTGTTGGAGATG 61.402 63.158 0.00 0.00 0.00 2.90
3360 3825 2.045926 GGCGTGGCTGTTGGAGAT 60.046 61.111 0.00 0.00 0.00 2.75
3361 3826 2.616797 TTTGGCGTGGCTGTTGGAGA 62.617 55.000 0.00 0.00 0.00 3.71
3362 3827 2.192861 TTTGGCGTGGCTGTTGGAG 61.193 57.895 0.00 0.00 0.00 3.86
3363 3828 2.124109 TTTGGCGTGGCTGTTGGA 60.124 55.556 0.00 0.00 0.00 3.53
3364 3829 1.169661 TAGTTTGGCGTGGCTGTTGG 61.170 55.000 0.00 0.00 0.00 3.77
3365 3830 0.238289 CTAGTTTGGCGTGGCTGTTG 59.762 55.000 0.00 0.00 0.00 3.33
3366 3831 1.515521 GCTAGTTTGGCGTGGCTGTT 61.516 55.000 0.00 0.00 0.00 3.16
3367 3832 1.966451 GCTAGTTTGGCGTGGCTGT 60.966 57.895 0.00 0.00 0.00 4.40
3368 3833 1.237285 AAGCTAGTTTGGCGTGGCTG 61.237 55.000 0.00 0.00 34.52 4.85
3369 3834 0.323629 TAAGCTAGTTTGGCGTGGCT 59.676 50.000 1.54 0.00 34.52 4.75
3370 3835 0.727398 CTAAGCTAGTTTGGCGTGGC 59.273 55.000 1.54 0.00 34.52 5.01
3371 3836 0.727398 GCTAAGCTAGTTTGGCGTGG 59.273 55.000 11.66 0.00 34.52 4.94
3375 3840 1.348594 CGCGCTAAGCTAGTTTGGC 59.651 57.895 16.16 16.16 45.59 4.52
3376 3841 1.348594 GCGCGCTAAGCTAGTTTGG 59.651 57.895 26.67 0.00 45.59 3.28
3377 3842 1.013323 CGCGCGCTAAGCTAGTTTG 60.013 57.895 30.48 4.48 45.59 2.93
3378 3843 2.799540 GCGCGCGCTAAGCTAGTTT 61.800 57.895 44.38 0.00 45.59 2.66
3379 3844 3.255379 GCGCGCGCTAAGCTAGTT 61.255 61.111 44.38 0.00 45.59 2.24
3529 3994 1.270625 TGGGTTAGAAGTTGCGAGTGG 60.271 52.381 0.00 0.00 0.00 4.00
3531 3996 1.270678 GGTGGGTTAGAAGTTGCGAGT 60.271 52.381 0.00 0.00 0.00 4.18
3541 4006 1.622607 CGGCTGGATGGTGGGTTAGA 61.623 60.000 0.00 0.00 0.00 2.10
3543 4008 2.994699 CGGCTGGATGGTGGGTTA 59.005 61.111 0.00 0.00 0.00 2.85
3580 4050 4.309950 GAACGGTCGCTGGGTGGT 62.310 66.667 0.00 0.00 0.00 4.16
3601 4073 3.168528 GGATAGGCCGGGGAAGCA 61.169 66.667 2.18 0.00 0.00 3.91
3647 4119 2.757099 GGGGCGACGGGACTAGAA 60.757 66.667 0.00 0.00 0.00 2.10
3706 4189 4.323477 AACACCTTGCGGGCGCTA 62.323 61.111 7.64 0.00 42.51 4.26
4004 4489 0.255604 TACGACTCCGGGTATGTGGA 59.744 55.000 0.00 0.00 40.78 4.02
4029 4514 0.461339 GCTCATCCTAAACCGGCGAA 60.461 55.000 9.30 0.00 0.00 4.70
4060 4545 1.086696 GTTTCTCTGCAATGCGCCTA 58.913 50.000 4.18 0.00 41.33 3.93
4161 4647 3.252779 TATGCCAACATACGCAAAGCGA 61.253 45.455 18.92 2.30 45.47 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.