Multiple sequence alignment - TraesCS2D01G413900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G413900 chr2D 100.000 3837 0 0 1 3837 528101205 528097369 0.000000e+00 7086.0
1 TraesCS2D01G413900 chr2D 86.265 415 46 8 70 474 44612081 44611668 1.270000e-119 440.0
2 TraesCS2D01G413900 chr2A 94.396 2302 101 15 603 2893 672947151 672944867 0.000000e+00 3511.0
3 TraesCS2D01G413900 chr2A 86.341 410 47 8 73 475 27369785 27370192 4.550000e-119 438.0
4 TraesCS2D01G413900 chr2A 94.872 78 4 0 3757 3834 672942811 672942734 5.210000e-24 122.0
5 TraesCS2D01G413900 chr2B 96.240 1915 57 6 1006 2914 626092178 626090273 0.000000e+00 3123.0
6 TraesCS2D01G413900 chr2B 87.260 416 25 5 611 1014 626099781 626099382 2.100000e-122 449.0
7 TraesCS2D01G413900 chr2B 81.319 273 44 6 3199 3466 776808195 776808465 8.350000e-52 215.0
8 TraesCS2D01G413900 chr3D 91.118 1824 144 9 1015 2822 23731208 23729387 0.000000e+00 2455.0
9 TraesCS2D01G413900 chr3D 85.296 1673 217 18 1187 2848 23230787 23229133 0.000000e+00 1700.0
10 TraesCS2D01G413900 chr3D 88.133 1382 133 12 1410 2780 23858140 23859501 0.000000e+00 1615.0
11 TraesCS2D01G413900 chr3D 95.200 250 7 5 3575 3823 90200254 90200009 1.290000e-104 390.0
12 TraesCS2D01G413900 chr3D 92.000 275 16 6 3514 3787 89932243 89931974 7.780000e-102 381.0
13 TraesCS2D01G413900 chr3D 85.799 338 43 3 3141 3473 553435934 553436271 1.700000e-93 353.0
14 TraesCS2D01G413900 chr3D 88.612 281 26 3 3164 3438 475883737 475884017 1.710000e-88 337.0
15 TraesCS2D01G413900 chr3D 82.687 387 44 10 998 1367 23734658 23734278 4.780000e-84 322.0
16 TraesCS2D01G413900 chr3D 90.000 100 5 3 998 1092 23885872 23885773 1.450000e-24 124.0
17 TraesCS2D01G413900 chr3D 95.161 62 2 1 3772 3832 89931957 89931896 3.160000e-16 97.1
18 TraesCS2D01G413900 chr3B 91.053 1833 135 14 1015 2820 42125241 42127071 0.000000e+00 2449.0
19 TraesCS2D01G413900 chr3B 85.590 1603 214 11 1187 2784 41015763 41014173 0.000000e+00 1664.0
20 TraesCS2D01G413900 chr3B 88.445 1376 140 18 1410 2780 41800647 41802008 0.000000e+00 1642.0
21 TraesCS2D01G413900 chr3B 91.003 289 13 9 3551 3832 139434465 139434183 1.010000e-100 377.0
22 TraesCS2D01G413900 chr3B 81.786 280 45 2 3140 3413 810256250 810256529 2.980000e-56 230.0
23 TraesCS2D01G413900 chr3A 90.840 1834 139 16 1016 2822 32876671 32874840 0.000000e+00 2429.0
24 TraesCS2D01G413900 chr3A 84.049 1887 248 35 998 2848 32426213 32428082 0.000000e+00 1768.0
25 TraesCS2D01G413900 chr3A 92.606 284 16 5 3554 3832 106516936 106516653 1.660000e-108 403.0
26 TraesCS2D01G413900 chr3A 83.386 319 46 4 3162 3478 732424529 732424842 4.850000e-74 289.0
27 TraesCS2D01G413900 chr6A 86.408 412 45 10 73 474 74975341 74975751 1.270000e-119 440.0
28 TraesCS2D01G413900 chr6A 83.815 346 49 5 3140 3478 527526783 527527128 4.780000e-84 322.0
29 TraesCS2D01G413900 chr5D 86.375 411 46 7 73 474 510563860 510564269 1.270000e-119 440.0
30 TraesCS2D01G413900 chr1B 91.615 322 14 7 3514 3834 626305136 626305445 2.120000e-117 433.0
31 TraesCS2D01G413900 chr1B 90.830 229 9 6 3514 3741 626303868 626304085 2.900000e-76 296.0
32 TraesCS2D01G413900 chr1B 91.176 204 6 6 3539 3741 626304832 626305024 2.270000e-67 267.0
33 TraesCS2D01G413900 chr1B 88.144 194 22 1 3281 3473 133455755 133455948 2.980000e-56 230.0
34 TraesCS2D01G413900 chr1B 83.420 193 29 2 2954 3145 475482787 475482977 3.940000e-40 176.0
35 TraesCS2D01G413900 chr4A 85.854 410 48 8 73 475 191162245 191162651 9.850000e-116 427.0
36 TraesCS2D01G413900 chr4A 87.565 193 23 1 2954 3145 173653066 173653258 4.990000e-54 222.0
37 TraesCS2D01G413900 chr4A 80.323 310 46 10 3171 3473 578092864 578093165 1.790000e-53 220.0
38 TraesCS2D01G413900 chr4A 100.000 28 0 0 1917 1944 75346533 75346560 7.000000e-03 52.8
39 TraesCS2D01G413900 chr7A 85.749 407 48 8 73 473 572487625 572487223 4.580000e-114 422.0
40 TraesCS2D01G413900 chr7A 79.612 309 39 11 3145 3446 507815041 507815332 2.340000e-47 200.0
41 TraesCS2D01G413900 chr4B 85.749 407 48 10 73 475 561731064 561731464 4.580000e-114 422.0
42 TraesCS2D01G413900 chr1A 85.337 416 47 13 73 475 52538559 52538145 5.930000e-113 418.0
43 TraesCS2D01G413900 chr1A 87.281 228 21 6 3514 3739 549529148 549529369 1.770000e-63 254.0
44 TraesCS2D01G413900 chr1A 85.027 187 27 1 2960 3145 506489725 506489911 5.060000e-44 189.0
45 TraesCS2D01G413900 chr1D 85.644 404 49 8 82 477 386895991 386895589 2.130000e-112 416.0
46 TraesCS2D01G413900 chr1D 90.654 321 18 7 3514 3834 455992638 455992946 2.130000e-112 416.0
47 TraesCS2D01G413900 chr1D 86.528 193 25 1 2954 3145 353569303 353569495 1.080000e-50 211.0
48 TraesCS2D01G413900 chrUn 86.555 238 30 2 1174 1410 373565497 373565261 1.060000e-65 261.0
49 TraesCS2D01G413900 chr5B 85.135 222 32 1 3256 3476 351487434 351487213 3.860000e-55 226.0
50 TraesCS2D01G413900 chr5B 88.827 179 17 3 2969 3145 58572460 58572637 2.320000e-52 217.0
51 TraesCS2D01G413900 chr5B 87.135 171 21 1 2975 3145 638760196 638760027 3.910000e-45 193.0
52 TraesCS2D01G413900 chr4D 82.329 249 34 6 2910 3149 381113578 381113331 1.400000e-49 207.0
53 TraesCS2D01G413900 chr4D 82.888 187 30 2 2954 3139 461334702 461334887 2.370000e-37 167.0
54 TraesCS2D01G413900 chr5A 85.714 203 20 6 3162 3359 44608661 44608859 5.020000e-49 206.0
55 TraesCS2D01G413900 chr7D 85.938 128 17 1 3014 3140 526183468 526183341 6.690000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G413900 chr2D 528097369 528101205 3836 True 7086.0 7086 100.0000 1 3837 1 chr2D.!!$R2 3836
1 TraesCS2D01G413900 chr2A 672942734 672947151 4417 True 1816.5 3511 94.6340 603 3834 2 chr2A.!!$R1 3231
2 TraesCS2D01G413900 chr2B 626090273 626092178 1905 True 3123.0 3123 96.2400 1006 2914 1 chr2B.!!$R1 1908
3 TraesCS2D01G413900 chr3D 23229133 23230787 1654 True 1700.0 1700 85.2960 1187 2848 1 chr3D.!!$R1 1661
4 TraesCS2D01G413900 chr3D 23858140 23859501 1361 False 1615.0 1615 88.1330 1410 2780 1 chr3D.!!$F1 1370
5 TraesCS2D01G413900 chr3D 23729387 23734658 5271 True 1388.5 2455 86.9025 998 2822 2 chr3D.!!$R4 1824
6 TraesCS2D01G413900 chr3B 42125241 42127071 1830 False 2449.0 2449 91.0530 1015 2820 1 chr3B.!!$F2 1805
7 TraesCS2D01G413900 chr3B 41014173 41015763 1590 True 1664.0 1664 85.5900 1187 2784 1 chr3B.!!$R1 1597
8 TraesCS2D01G413900 chr3B 41800647 41802008 1361 False 1642.0 1642 88.4450 1410 2780 1 chr3B.!!$F1 1370
9 TraesCS2D01G413900 chr3A 32874840 32876671 1831 True 2429.0 2429 90.8400 1016 2822 1 chr3A.!!$R1 1806
10 TraesCS2D01G413900 chr3A 32426213 32428082 1869 False 1768.0 1768 84.0490 998 2848 1 chr3A.!!$F1 1850
11 TraesCS2D01G413900 chr1B 626303868 626305445 1577 False 332.0 433 91.2070 3514 3834 3 chr1B.!!$F3 320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.036164 CACCAAGTTCCCGTCCATCA 59.964 55.0 0.00 0.00 0.00 3.07 F
580 581 0.250424 CAGCGTATGGATCCATGCCA 60.250 55.0 33.41 14.24 40.24 4.92 F
659 661 0.312102 TCTCCTAGCGTCATCATGCG 59.688 55.0 0.00 0.00 39.81 4.73 F
677 679 0.313987 CGGCAGACGCATATCCAGTA 59.686 55.0 0.00 0.00 41.24 2.74 F
2762 6267 0.751643 GCCCATCGCCAACTGGTATT 60.752 55.0 0.00 0.00 37.57 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 5075 1.007734 GTGCTCGTCGAACTGGTCA 60.008 57.895 0.00 0.00 0.00 4.02 R
1903 5405 2.833582 TCGATGCCGGACTCCCTC 60.834 66.667 5.05 0.00 36.24 4.30 R
2634 6139 2.115266 ACCCTTGCTTTCCACCCG 59.885 61.111 0.00 0.00 0.00 5.28 R
2789 6294 0.621082 TCAATGGCATCCGGGTTGTA 59.379 50.000 0.00 0.00 0.00 2.41 R
3749 9793 0.038166 TGAGGGGGCAATTGACAGTC 59.962 55.000 14.60 6.72 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.687824 AAAAATAAGTCAAATAGAATGCGGTG 57.312 30.769 0.00 0.00 0.00 4.94
39 40 4.946784 AAGTCAAATAGAATGCGGTGAC 57.053 40.909 0.00 0.00 36.48 3.67
40 41 3.937814 AGTCAAATAGAATGCGGTGACA 58.062 40.909 4.60 0.00 38.24 3.58
41 42 3.684788 AGTCAAATAGAATGCGGTGACAC 59.315 43.478 0.00 0.00 38.24 3.67
45 46 5.009110 TCAAATAGAATGCGGTGACACAAAA 59.991 36.000 8.08 0.00 0.00 2.44
70 71 6.731292 AATTGATAAAAAGGTATCAGGCCC 57.269 37.500 0.00 0.00 40.64 5.80
71 72 4.871871 TGATAAAAAGGTATCAGGCCCA 57.128 40.909 0.00 0.00 35.92 5.36
72 73 4.792068 TGATAAAAAGGTATCAGGCCCAG 58.208 43.478 0.00 0.00 35.92 4.45
73 74 4.476846 TGATAAAAAGGTATCAGGCCCAGA 59.523 41.667 0.00 0.00 35.92 3.86
74 75 3.825908 AAAAAGGTATCAGGCCCAGAA 57.174 42.857 0.00 0.00 0.00 3.02
75 76 3.825908 AAAAGGTATCAGGCCCAGAAA 57.174 42.857 0.00 0.00 0.00 2.52
76 77 3.825908 AAAGGTATCAGGCCCAGAAAA 57.174 42.857 0.00 0.00 0.00 2.29
77 78 4.337264 AAAGGTATCAGGCCCAGAAAAT 57.663 40.909 0.00 0.00 0.00 1.82
78 79 5.466127 AAAGGTATCAGGCCCAGAAAATA 57.534 39.130 0.00 0.00 0.00 1.40
79 80 5.669798 AAGGTATCAGGCCCAGAAAATAT 57.330 39.130 0.00 0.00 0.00 1.28
80 81 4.990526 AGGTATCAGGCCCAGAAAATATG 58.009 43.478 0.00 0.00 0.00 1.78
81 82 4.665009 AGGTATCAGGCCCAGAAAATATGA 59.335 41.667 0.00 0.00 0.00 2.15
82 83 5.134339 AGGTATCAGGCCCAGAAAATATGAA 59.866 40.000 0.00 0.00 0.00 2.57
83 84 5.474876 GGTATCAGGCCCAGAAAATATGAAG 59.525 44.000 0.00 0.00 0.00 3.02
84 85 3.902218 TCAGGCCCAGAAAATATGAAGG 58.098 45.455 0.00 0.00 0.00 3.46
85 86 3.527253 TCAGGCCCAGAAAATATGAAGGA 59.473 43.478 0.00 0.00 0.00 3.36
86 87 3.887716 CAGGCCCAGAAAATATGAAGGAG 59.112 47.826 0.00 0.00 0.00 3.69
87 88 3.788142 AGGCCCAGAAAATATGAAGGAGA 59.212 43.478 0.00 0.00 0.00 3.71
88 89 4.230502 AGGCCCAGAAAATATGAAGGAGAA 59.769 41.667 0.00 0.00 0.00 2.87
89 90 4.339530 GGCCCAGAAAATATGAAGGAGAAC 59.660 45.833 0.00 0.00 0.00 3.01
90 91 4.339530 GCCCAGAAAATATGAAGGAGAACC 59.660 45.833 0.00 0.00 0.00 3.62
110 111 3.227250 GGTACCAGCGCACCCTAT 58.773 61.111 11.47 0.00 0.00 2.57
111 112 2.433217 GGTACCAGCGCACCCTATA 58.567 57.895 11.47 0.00 0.00 1.31
112 113 0.974383 GGTACCAGCGCACCCTATAT 59.026 55.000 11.47 0.00 0.00 0.86
113 114 1.337823 GGTACCAGCGCACCCTATATG 60.338 57.143 11.47 0.00 0.00 1.78
114 115 0.320374 TACCAGCGCACCCTATATGC 59.680 55.000 11.47 0.00 39.81 3.14
115 116 1.071299 CCAGCGCACCCTATATGCA 59.929 57.895 11.47 0.00 43.57 3.96
116 117 0.534877 CCAGCGCACCCTATATGCAA 60.535 55.000 11.47 0.00 43.57 4.08
117 118 1.308047 CAGCGCACCCTATATGCAAA 58.692 50.000 11.47 0.00 43.57 3.68
118 119 1.265095 CAGCGCACCCTATATGCAAAG 59.735 52.381 11.47 0.00 43.57 2.77
119 120 1.140852 AGCGCACCCTATATGCAAAGA 59.859 47.619 11.47 0.00 43.57 2.52
120 121 1.264288 GCGCACCCTATATGCAAAGAC 59.736 52.381 0.30 0.00 43.57 3.01
121 122 2.560504 CGCACCCTATATGCAAAGACA 58.439 47.619 0.00 0.00 43.57 3.41
122 123 2.942376 CGCACCCTATATGCAAAGACAA 59.058 45.455 0.00 0.00 43.57 3.18
123 124 3.002656 CGCACCCTATATGCAAAGACAAG 59.997 47.826 0.00 0.00 43.57 3.16
124 125 3.947834 GCACCCTATATGCAAAGACAAGT 59.052 43.478 0.00 0.00 42.88 3.16
125 126 5.123227 GCACCCTATATGCAAAGACAAGTA 58.877 41.667 0.00 0.00 42.88 2.24
126 127 5.588648 GCACCCTATATGCAAAGACAAGTAA 59.411 40.000 0.00 0.00 42.88 2.24
127 128 6.263168 GCACCCTATATGCAAAGACAAGTAAT 59.737 38.462 0.00 0.00 42.88 1.89
128 129 7.201821 GCACCCTATATGCAAAGACAAGTAATT 60.202 37.037 0.00 0.00 42.88 1.40
129 130 8.345565 CACCCTATATGCAAAGACAAGTAATTC 58.654 37.037 0.00 0.00 0.00 2.17
130 131 8.052748 ACCCTATATGCAAAGACAAGTAATTCA 58.947 33.333 0.00 0.00 0.00 2.57
131 132 8.902806 CCCTATATGCAAAGACAAGTAATTCAA 58.097 33.333 0.00 0.00 0.00 2.69
212 213 8.697846 AATCGTACAAAAATATTCGTCAGAGA 57.302 30.769 0.00 0.00 0.00 3.10
213 214 8.697846 ATCGTACAAAAATATTCGTCAGAGAA 57.302 30.769 0.00 0.00 34.31 2.87
214 215 8.697846 TCGTACAAAAATATTCGTCAGAGAAT 57.302 30.769 0.00 0.00 42.77 2.40
215 216 8.592155 TCGTACAAAAATATTCGTCAGAGAATG 58.408 33.333 2.81 0.00 40.66 2.67
216 217 8.592155 CGTACAAAAATATTCGTCAGAGAATGA 58.408 33.333 2.81 0.00 40.66 2.57
230 231 6.644347 TCAGAGAATGACTTCCTTTGTATCC 58.356 40.000 0.00 0.00 31.12 2.59
231 232 6.441924 TCAGAGAATGACTTCCTTTGTATCCT 59.558 38.462 0.00 0.00 31.12 3.24
232 233 6.538021 CAGAGAATGACTTCCTTTGTATCCTG 59.462 42.308 0.00 0.00 31.27 3.86
233 234 5.749462 AGAATGACTTCCTTTGTATCCTGG 58.251 41.667 0.00 0.00 31.27 4.45
234 235 5.488919 AGAATGACTTCCTTTGTATCCTGGA 59.511 40.000 0.00 0.00 31.27 3.86
235 236 5.983333 ATGACTTCCTTTGTATCCTGGAT 57.017 39.130 14.66 14.66 0.00 3.41
236 237 5.359194 TGACTTCCTTTGTATCCTGGATC 57.641 43.478 13.54 5.87 0.00 3.36
237 238 4.141937 TGACTTCCTTTGTATCCTGGATCG 60.142 45.833 13.54 0.00 0.00 3.69
238 239 4.030913 ACTTCCTTTGTATCCTGGATCGA 58.969 43.478 13.54 2.43 0.00 3.59
239 240 4.469945 ACTTCCTTTGTATCCTGGATCGAA 59.530 41.667 13.54 9.89 0.00 3.71
240 241 4.672587 TCCTTTGTATCCTGGATCGAAG 57.327 45.455 13.54 17.35 0.00 3.79
241 242 4.286707 TCCTTTGTATCCTGGATCGAAGA 58.713 43.478 23.59 11.29 45.75 2.87
242 243 4.901849 TCCTTTGTATCCTGGATCGAAGAT 59.098 41.667 23.59 4.09 45.12 2.40
243 244 5.366768 TCCTTTGTATCCTGGATCGAAGATT 59.633 40.000 23.59 3.51 45.12 2.40
244 245 5.698545 CCTTTGTATCCTGGATCGAAGATTC 59.301 44.000 23.59 0.00 45.12 2.52
275 276 9.537192 AAAAACGCTATATACAAGCACTATACA 57.463 29.630 9.05 0.00 40.08 2.29
276 277 8.516811 AAACGCTATATACAAGCACTATACAC 57.483 34.615 9.05 0.00 40.08 2.90
277 278 6.312487 ACGCTATATACAAGCACTATACACG 58.688 40.000 9.05 0.00 40.08 4.49
278 279 5.227391 CGCTATATACAAGCACTATACACGC 59.773 44.000 9.05 0.00 40.08 5.34
279 280 6.323266 GCTATATACAAGCACTATACACGCT 58.677 40.000 4.42 0.00 39.83 5.07
280 281 7.470079 GCTATATACAAGCACTATACACGCTA 58.530 38.462 4.42 0.00 39.83 4.26
281 282 8.129840 GCTATATACAAGCACTATACACGCTAT 58.870 37.037 4.42 0.00 39.83 2.97
285 286 8.689251 ATACAAGCACTATACACGCTATATTG 57.311 34.615 0.00 0.00 34.11 1.90
286 287 6.513180 ACAAGCACTATACACGCTATATTGT 58.487 36.000 0.00 0.00 34.11 2.71
287 288 6.641314 ACAAGCACTATACACGCTATATTGTC 59.359 38.462 0.00 0.00 34.11 3.18
288 289 5.391449 AGCACTATACACGCTATATTGTCG 58.609 41.667 0.00 0.00 33.25 4.35
289 290 4.030306 GCACTATACACGCTATATTGTCGC 59.970 45.833 0.00 0.00 0.00 5.19
290 291 4.557690 CACTATACACGCTATATTGTCGCC 59.442 45.833 0.00 0.00 0.00 5.54
291 292 3.653539 ATACACGCTATATTGTCGCCA 57.346 42.857 0.00 0.00 0.00 5.69
292 293 2.526304 ACACGCTATATTGTCGCCAT 57.474 45.000 0.00 0.00 0.00 4.40
293 294 3.653539 ACACGCTATATTGTCGCCATA 57.346 42.857 0.00 0.00 0.00 2.74
294 295 3.985008 ACACGCTATATTGTCGCCATAA 58.015 40.909 0.00 0.00 0.00 1.90
295 296 4.373527 ACACGCTATATTGTCGCCATAAA 58.626 39.130 0.00 0.00 0.00 1.40
296 297 4.994852 ACACGCTATATTGTCGCCATAAAT 59.005 37.500 0.00 0.00 0.00 1.40
297 298 5.468746 ACACGCTATATTGTCGCCATAAATT 59.531 36.000 0.00 0.00 0.00 1.82
298 299 6.017440 ACACGCTATATTGTCGCCATAAATTT 60.017 34.615 0.00 0.00 0.00 1.82
299 300 7.171848 ACACGCTATATTGTCGCCATAAATTTA 59.828 33.333 0.00 0.00 0.00 1.40
300 301 7.477422 CACGCTATATTGTCGCCATAAATTTAC 59.523 37.037 0.00 0.00 0.00 2.01
301 302 6.959311 CGCTATATTGTCGCCATAAATTTACC 59.041 38.462 0.00 0.00 0.00 2.85
302 303 7.148474 CGCTATATTGTCGCCATAAATTTACCT 60.148 37.037 0.00 0.00 0.00 3.08
303 304 8.512138 GCTATATTGTCGCCATAAATTTACCTT 58.488 33.333 0.00 0.00 0.00 3.50
307 308 7.644986 TTGTCGCCATAAATTTACCTTTTTG 57.355 32.000 0.00 0.00 0.00 2.44
308 309 5.635700 TGTCGCCATAAATTTACCTTTTTGC 59.364 36.000 0.00 0.00 0.00 3.68
309 310 5.062934 GTCGCCATAAATTTACCTTTTTGCC 59.937 40.000 0.00 0.00 0.00 4.52
310 311 4.331443 CGCCATAAATTTACCTTTTTGCCC 59.669 41.667 0.00 0.00 0.00 5.36
311 312 5.496556 GCCATAAATTTACCTTTTTGCCCT 58.503 37.500 0.00 0.00 0.00 5.19
312 313 5.353956 GCCATAAATTTACCTTTTTGCCCTG 59.646 40.000 0.00 0.00 0.00 4.45
313 314 6.706295 CCATAAATTTACCTTTTTGCCCTGA 58.294 36.000 0.00 0.00 0.00 3.86
314 315 7.164803 CCATAAATTTACCTTTTTGCCCTGAA 58.835 34.615 0.00 0.00 0.00 3.02
315 316 7.334171 CCATAAATTTACCTTTTTGCCCTGAAG 59.666 37.037 0.00 0.00 0.00 3.02
316 317 5.887214 AATTTACCTTTTTGCCCTGAAGT 57.113 34.783 0.00 0.00 0.00 3.01
317 318 4.929819 TTTACCTTTTTGCCCTGAAGTC 57.070 40.909 0.00 0.00 0.00 3.01
318 319 2.452600 ACCTTTTTGCCCTGAAGTCA 57.547 45.000 0.00 0.00 0.00 3.41
319 320 2.745968 ACCTTTTTGCCCTGAAGTCAA 58.254 42.857 0.00 0.00 0.00 3.18
320 321 3.308401 ACCTTTTTGCCCTGAAGTCAAT 58.692 40.909 0.00 0.00 0.00 2.57
321 322 4.479158 ACCTTTTTGCCCTGAAGTCAATA 58.521 39.130 0.00 0.00 0.00 1.90
322 323 5.086621 ACCTTTTTGCCCTGAAGTCAATAT 58.913 37.500 0.00 0.00 0.00 1.28
323 324 5.047092 ACCTTTTTGCCCTGAAGTCAATATG 60.047 40.000 0.00 0.00 0.00 1.78
324 325 5.185635 CCTTTTTGCCCTGAAGTCAATATGA 59.814 40.000 0.00 0.00 0.00 2.15
325 326 6.295236 CCTTTTTGCCCTGAAGTCAATATGAA 60.295 38.462 0.00 0.00 0.00 2.57
326 327 5.643379 TTTGCCCTGAAGTCAATATGAAC 57.357 39.130 0.00 0.00 0.00 3.18
327 328 3.620488 TGCCCTGAAGTCAATATGAACC 58.380 45.455 0.00 0.00 0.00 3.62
328 329 3.010027 TGCCCTGAAGTCAATATGAACCA 59.990 43.478 0.00 0.00 0.00 3.67
329 330 4.210331 GCCCTGAAGTCAATATGAACCAT 58.790 43.478 0.00 0.00 0.00 3.55
330 331 4.646492 GCCCTGAAGTCAATATGAACCATT 59.354 41.667 0.00 0.00 0.00 3.16
331 332 5.127682 GCCCTGAAGTCAATATGAACCATTT 59.872 40.000 0.00 0.00 0.00 2.32
332 333 6.681368 GCCCTGAAGTCAATATGAACCATTTC 60.681 42.308 0.00 0.00 0.00 2.17
333 334 6.377996 CCCTGAAGTCAATATGAACCATTTCA 59.622 38.462 0.00 0.00 45.93 2.69
342 343 3.399440 TGAACCATTTCATGCCCAAAC 57.601 42.857 0.00 0.00 36.79 2.93
343 344 2.971330 TGAACCATTTCATGCCCAAACT 59.029 40.909 0.00 0.00 36.79 2.66
344 345 3.390639 TGAACCATTTCATGCCCAAACTT 59.609 39.130 0.00 0.00 36.79 2.66
345 346 4.141528 TGAACCATTTCATGCCCAAACTTT 60.142 37.500 0.00 0.00 36.79 2.66
346 347 4.436113 ACCATTTCATGCCCAAACTTTT 57.564 36.364 0.00 0.00 0.00 2.27
347 348 4.790937 ACCATTTCATGCCCAAACTTTTT 58.209 34.783 0.00 0.00 0.00 1.94
348 349 5.934781 ACCATTTCATGCCCAAACTTTTTA 58.065 33.333 0.00 0.00 0.00 1.52
349 350 6.541907 ACCATTTCATGCCCAAACTTTTTAT 58.458 32.000 0.00 0.00 0.00 1.40
350 351 7.684529 ACCATTTCATGCCCAAACTTTTTATA 58.315 30.769 0.00 0.00 0.00 0.98
351 352 7.823799 ACCATTTCATGCCCAAACTTTTTATAG 59.176 33.333 0.00 0.00 0.00 1.31
352 353 8.040132 CCATTTCATGCCCAAACTTTTTATAGA 58.960 33.333 0.00 0.00 0.00 1.98
353 354 9.434420 CATTTCATGCCCAAACTTTTTATAGAA 57.566 29.630 0.00 0.00 0.00 2.10
354 355 9.657419 ATTTCATGCCCAAACTTTTTATAGAAG 57.343 29.630 0.00 0.00 0.00 2.85
355 356 7.775053 TCATGCCCAAACTTTTTATAGAAGT 57.225 32.000 0.00 0.00 38.92 3.01
356 357 8.871629 TCATGCCCAAACTTTTTATAGAAGTA 57.128 30.769 4.57 0.00 36.38 2.24
357 358 8.736244 TCATGCCCAAACTTTTTATAGAAGTAC 58.264 33.333 4.57 0.00 36.38 2.73
358 359 8.519526 CATGCCCAAACTTTTTATAGAAGTACA 58.480 33.333 0.00 0.00 36.38 2.90
359 360 8.466617 TGCCCAAACTTTTTATAGAAGTACAA 57.533 30.769 0.00 0.00 36.38 2.41
360 361 9.084533 TGCCCAAACTTTTTATAGAAGTACAAT 57.915 29.630 0.00 0.00 36.38 2.71
382 383 9.645128 ACAATACCTGATCATATTTGATTCCAA 57.355 29.630 0.00 0.00 42.73 3.53
387 388 9.258629 ACCTGATCATATTTGATTCCAAAAAGA 57.741 29.630 0.00 0.00 44.49 2.52
432 433 8.819643 ATTTAATTACTAAACTTTTTGGCGCA 57.180 26.923 10.83 0.00 32.26 6.09
433 434 8.819643 TTTAATTACTAAACTTTTTGGCGCAT 57.180 26.923 10.83 0.00 0.00 4.73
434 435 9.909644 TTTAATTACTAAACTTTTTGGCGCATA 57.090 25.926 10.83 0.00 0.00 3.14
437 438 9.730420 AATTACTAAACTTTTTGGCGCATATAG 57.270 29.630 10.83 1.69 0.00 1.31
438 439 6.131544 ACTAAACTTTTTGGCGCATATAGG 57.868 37.500 10.83 0.00 0.00 2.57
439 440 4.385358 AAACTTTTTGGCGCATATAGGG 57.615 40.909 10.83 0.00 0.00 3.53
440 441 3.012934 ACTTTTTGGCGCATATAGGGT 57.987 42.857 10.83 0.00 0.00 4.34
441 442 2.687935 ACTTTTTGGCGCATATAGGGTG 59.312 45.455 10.83 0.00 0.00 4.61
442 443 1.028905 TTTTGGCGCATATAGGGTGC 58.971 50.000 10.83 4.58 40.91 5.01
447 448 2.742372 GCATATAGGGTGCGCGGG 60.742 66.667 8.83 0.00 32.29 6.13
448 449 2.741092 CATATAGGGTGCGCGGGT 59.259 61.111 8.83 0.00 0.00 5.28
449 450 1.969085 CATATAGGGTGCGCGGGTA 59.031 57.895 8.83 0.00 0.00 3.69
450 451 0.389426 CATATAGGGTGCGCGGGTAC 60.389 60.000 12.29 12.29 0.00 3.34
466 467 3.629142 GGTACCTGATAGCACCAAGTT 57.371 47.619 4.06 0.00 0.00 2.66
467 468 3.532542 GGTACCTGATAGCACCAAGTTC 58.467 50.000 4.06 0.00 0.00 3.01
468 469 2.789409 ACCTGATAGCACCAAGTTCC 57.211 50.000 0.00 0.00 0.00 3.62
469 470 1.282157 ACCTGATAGCACCAAGTTCCC 59.718 52.381 0.00 0.00 0.00 3.97
470 471 1.656652 CTGATAGCACCAAGTTCCCG 58.343 55.000 0.00 0.00 0.00 5.14
471 472 0.981183 TGATAGCACCAAGTTCCCGT 59.019 50.000 0.00 0.00 0.00 5.28
472 473 1.066430 TGATAGCACCAAGTTCCCGTC 60.066 52.381 0.00 0.00 0.00 4.79
473 474 0.252197 ATAGCACCAAGTTCCCGTCC 59.748 55.000 0.00 0.00 0.00 4.79
474 475 1.122632 TAGCACCAAGTTCCCGTCCA 61.123 55.000 0.00 0.00 0.00 4.02
475 476 1.303317 GCACCAAGTTCCCGTCCAT 60.303 57.895 0.00 0.00 0.00 3.41
476 477 1.305930 GCACCAAGTTCCCGTCCATC 61.306 60.000 0.00 0.00 0.00 3.51
477 478 0.036164 CACCAAGTTCCCGTCCATCA 59.964 55.000 0.00 0.00 0.00 3.07
478 479 0.324943 ACCAAGTTCCCGTCCATCAG 59.675 55.000 0.00 0.00 0.00 2.90
479 480 0.392998 CCAAGTTCCCGTCCATCAGG 60.393 60.000 0.00 0.00 0.00 3.86
480 481 1.026718 CAAGTTCCCGTCCATCAGGC 61.027 60.000 0.00 0.00 33.74 4.85
481 482 2.124695 GTTCCCGTCCATCAGGCC 60.125 66.667 0.00 0.00 33.74 5.19
482 483 3.407967 TTCCCGTCCATCAGGCCC 61.408 66.667 0.00 0.00 33.74 5.80
483 484 4.731853 TCCCGTCCATCAGGCCCA 62.732 66.667 0.00 0.00 33.74 5.36
484 485 3.492353 CCCGTCCATCAGGCCCAT 61.492 66.667 0.00 0.00 33.74 4.00
485 486 2.597340 CCGTCCATCAGGCCCATT 59.403 61.111 0.00 0.00 33.74 3.16
486 487 1.705002 CCCGTCCATCAGGCCCATTA 61.705 60.000 0.00 0.00 33.74 1.90
487 488 0.535102 CCGTCCATCAGGCCCATTAC 60.535 60.000 0.00 0.00 33.74 1.89
488 489 0.469917 CGTCCATCAGGCCCATTACT 59.530 55.000 0.00 0.00 33.74 2.24
489 490 1.691976 CGTCCATCAGGCCCATTACTA 59.308 52.381 0.00 0.00 33.74 1.82
490 491 2.303022 CGTCCATCAGGCCCATTACTAT 59.697 50.000 0.00 0.00 33.74 2.12
491 492 3.244561 CGTCCATCAGGCCCATTACTATT 60.245 47.826 0.00 0.00 33.74 1.73
492 493 4.327680 GTCCATCAGGCCCATTACTATTC 58.672 47.826 0.00 0.00 33.74 1.75
493 494 4.042187 GTCCATCAGGCCCATTACTATTCT 59.958 45.833 0.00 0.00 33.74 2.40
494 495 5.248477 GTCCATCAGGCCCATTACTATTCTA 59.752 44.000 0.00 0.00 33.74 2.10
495 496 5.248477 TCCATCAGGCCCATTACTATTCTAC 59.752 44.000 0.00 0.00 33.74 2.59
496 497 5.491982 CATCAGGCCCATTACTATTCTACC 58.508 45.833 0.00 0.00 0.00 3.18
497 498 3.576982 TCAGGCCCATTACTATTCTACCG 59.423 47.826 0.00 0.00 0.00 4.02
498 499 3.323979 CAGGCCCATTACTATTCTACCGT 59.676 47.826 0.00 0.00 0.00 4.83
499 500 4.525487 CAGGCCCATTACTATTCTACCGTA 59.475 45.833 0.00 0.00 0.00 4.02
500 501 5.187186 CAGGCCCATTACTATTCTACCGTAT 59.813 44.000 0.00 0.00 0.00 3.06
501 502 5.783875 AGGCCCATTACTATTCTACCGTATT 59.216 40.000 0.00 0.00 0.00 1.89
502 503 5.873164 GGCCCATTACTATTCTACCGTATTG 59.127 44.000 0.00 0.00 0.00 1.90
503 504 6.461640 GCCCATTACTATTCTACCGTATTGT 58.538 40.000 0.00 0.00 0.00 2.71
504 505 7.309990 GGCCCATTACTATTCTACCGTATTGTA 60.310 40.741 0.00 0.00 0.00 2.41
505 506 8.255905 GCCCATTACTATTCTACCGTATTGTAT 58.744 37.037 0.00 0.00 0.00 2.29
512 513 8.853126 ACTATTCTACCGTATTGTATTACTGCA 58.147 33.333 0.00 0.00 0.00 4.41
513 514 9.856488 CTATTCTACCGTATTGTATTACTGCAT 57.144 33.333 0.00 0.00 0.00 3.96
514 515 7.940178 TTCTACCGTATTGTATTACTGCATG 57.060 36.000 0.00 0.00 0.00 4.06
515 516 7.046292 TCTACCGTATTGTATTACTGCATGT 57.954 36.000 0.00 0.00 0.00 3.21
516 517 5.984233 ACCGTATTGTATTACTGCATGTG 57.016 39.130 0.00 0.00 0.00 3.21
517 518 5.424757 ACCGTATTGTATTACTGCATGTGT 58.575 37.500 0.00 0.00 0.00 3.72
518 519 6.575267 ACCGTATTGTATTACTGCATGTGTA 58.425 36.000 0.00 0.00 0.00 2.90
519 520 6.477688 ACCGTATTGTATTACTGCATGTGTAC 59.522 38.462 0.00 0.00 0.00 2.90
520 521 6.477360 CCGTATTGTATTACTGCATGTGTACA 59.523 38.462 0.00 0.00 32.87 2.90
521 522 7.306574 CCGTATTGTATTACTGCATGTGTACAG 60.307 40.741 0.00 0.00 39.86 2.74
523 524 6.961359 TTGTATTACTGCATGTGTACAGTC 57.039 37.500 6.94 0.00 43.55 3.51
524 525 5.099575 TGTATTACTGCATGTGTACAGTCG 58.900 41.667 6.94 0.00 43.55 4.18
525 526 2.647529 TACTGCATGTGTACAGTCGG 57.352 50.000 6.94 0.00 43.55 4.79
526 527 0.966179 ACTGCATGTGTACAGTCGGA 59.034 50.000 0.00 0.00 43.55 4.55
527 528 1.336887 ACTGCATGTGTACAGTCGGAC 60.337 52.381 0.00 0.00 43.55 4.79
528 529 0.676736 TGCATGTGTACAGTCGGACA 59.323 50.000 11.27 0.00 0.00 4.02
529 530 1.069358 TGCATGTGTACAGTCGGACAA 59.931 47.619 11.27 0.00 0.00 3.18
530 531 2.139917 GCATGTGTACAGTCGGACAAA 58.860 47.619 11.27 0.00 0.00 2.83
531 532 2.096417 GCATGTGTACAGTCGGACAAAC 60.096 50.000 11.27 5.83 0.00 2.93
532 533 3.390135 CATGTGTACAGTCGGACAAACT 58.610 45.455 11.27 0.00 0.00 2.66
533 534 3.530265 TGTGTACAGTCGGACAAACTT 57.470 42.857 11.27 0.00 0.00 2.66
534 535 3.864243 TGTGTACAGTCGGACAAACTTT 58.136 40.909 11.27 0.00 0.00 2.66
535 536 3.619483 TGTGTACAGTCGGACAAACTTTG 59.381 43.478 11.27 0.00 0.00 2.77
550 551 7.698836 ACAAACTTTGTCTACATTGATTTGC 57.301 32.000 1.00 0.00 40.56 3.68
551 552 7.491682 ACAAACTTTGTCTACATTGATTTGCT 58.508 30.769 1.00 0.00 40.56 3.91
552 553 7.981225 ACAAACTTTGTCTACATTGATTTGCTT 59.019 29.630 1.00 0.00 40.56 3.91
553 554 8.819974 CAAACTTTGTCTACATTGATTTGCTTT 58.180 29.630 0.00 0.00 0.00 3.51
554 555 7.935338 ACTTTGTCTACATTGATTTGCTTTG 57.065 32.000 0.00 0.00 0.00 2.77
555 556 6.421801 ACTTTGTCTACATTGATTTGCTTTGC 59.578 34.615 0.00 0.00 0.00 3.68
556 557 5.450592 TGTCTACATTGATTTGCTTTGCA 57.549 34.783 0.00 0.00 36.47 4.08
557 558 6.028146 TGTCTACATTGATTTGCTTTGCAT 57.972 33.333 0.00 0.00 38.76 3.96
558 559 7.155655 TGTCTACATTGATTTGCTTTGCATA 57.844 32.000 0.00 0.00 38.76 3.14
559 560 7.774134 TGTCTACATTGATTTGCTTTGCATAT 58.226 30.769 0.00 0.00 38.76 1.78
560 561 8.901793 TGTCTACATTGATTTGCTTTGCATATA 58.098 29.630 0.00 0.00 38.76 0.86
561 562 9.173939 GTCTACATTGATTTGCTTTGCATATAC 57.826 33.333 0.00 0.00 38.76 1.47
562 563 8.901793 TCTACATTGATTTGCTTTGCATATACA 58.098 29.630 0.00 0.00 38.76 2.29
563 564 7.997107 ACATTGATTTGCTTTGCATATACAG 57.003 32.000 0.00 0.00 38.76 2.74
564 565 6.477688 ACATTGATTTGCTTTGCATATACAGC 59.522 34.615 0.00 0.00 38.76 4.40
565 566 4.600032 TGATTTGCTTTGCATATACAGCG 58.400 39.130 0.00 0.00 38.76 5.18
566 567 4.096231 TGATTTGCTTTGCATATACAGCGT 59.904 37.500 0.00 0.00 38.76 5.07
567 568 5.295540 TGATTTGCTTTGCATATACAGCGTA 59.704 36.000 0.00 0.00 38.76 4.42
568 569 5.749596 TTTGCTTTGCATATACAGCGTAT 57.250 34.783 0.00 6.48 38.76 3.06
569 570 4.730600 TGCTTTGCATATACAGCGTATG 57.269 40.909 10.26 4.85 34.82 2.39
570 571 3.498018 TGCTTTGCATATACAGCGTATGG 59.502 43.478 10.26 5.26 34.82 2.74
571 572 3.745975 GCTTTGCATATACAGCGTATGGA 59.254 43.478 10.26 2.65 31.68 3.41
572 573 4.393062 GCTTTGCATATACAGCGTATGGAT 59.607 41.667 10.26 0.00 36.09 3.41
573 574 5.446473 GCTTTGCATATACAGCGTATGGATC 60.446 44.000 10.26 0.00 33.19 3.36
574 575 4.123497 TGCATATACAGCGTATGGATCC 57.877 45.455 4.20 4.20 33.19 3.36
575 576 3.513515 TGCATATACAGCGTATGGATCCA 59.486 43.478 18.88 18.88 33.19 3.41
576 577 4.162131 TGCATATACAGCGTATGGATCCAT 59.838 41.667 29.66 29.66 33.19 3.41
577 578 4.509230 GCATATACAGCGTATGGATCCATG 59.491 45.833 33.41 21.79 37.82 3.66
578 579 2.455674 TACAGCGTATGGATCCATGC 57.544 50.000 33.41 30.48 37.82 4.06
579 580 0.250467 ACAGCGTATGGATCCATGCC 60.250 55.000 33.41 24.48 36.00 4.40
580 581 0.250424 CAGCGTATGGATCCATGCCA 60.250 55.000 33.41 14.24 40.24 4.92
581 582 0.473755 AGCGTATGGATCCATGCCAA 59.526 50.000 33.41 13.87 39.21 4.52
582 583 1.133823 AGCGTATGGATCCATGCCAAA 60.134 47.619 33.41 13.48 39.21 3.28
583 584 1.680735 GCGTATGGATCCATGCCAAAA 59.319 47.619 33.41 12.74 39.21 2.44
584 585 2.100584 GCGTATGGATCCATGCCAAAAA 59.899 45.455 33.41 12.00 39.21 1.94
585 586 3.243839 GCGTATGGATCCATGCCAAAAAT 60.244 43.478 33.41 10.53 39.21 1.82
586 587 4.022416 GCGTATGGATCCATGCCAAAAATA 60.022 41.667 33.41 10.52 39.21 1.40
587 588 5.508825 GCGTATGGATCCATGCCAAAAATAA 60.509 40.000 33.41 9.78 39.21 1.40
588 589 6.511416 CGTATGGATCCATGCCAAAAATAAA 58.489 36.000 33.41 9.26 39.21 1.40
589 590 7.153985 CGTATGGATCCATGCCAAAAATAAAT 58.846 34.615 33.41 8.62 39.21 1.40
590 591 8.303156 CGTATGGATCCATGCCAAAAATAAATA 58.697 33.333 33.41 8.61 39.21 1.40
591 592 9.995003 GTATGGATCCATGCCAAAAATAAATAA 57.005 29.630 33.41 7.96 39.21 1.40
593 594 9.917887 ATGGATCCATGCCAAAAATAAATAAAA 57.082 25.926 26.78 0.00 39.21 1.52
594 595 9.917887 TGGATCCATGCCAAAAATAAATAAAAT 57.082 25.926 11.44 0.00 31.13 1.82
631 632 3.627395 TTCTGTTGACTGGCCGAATAT 57.373 42.857 0.00 0.00 0.00 1.28
638 639 4.681074 TGACTGGCCGAATATAACATGA 57.319 40.909 0.00 0.00 0.00 3.07
641 642 5.700832 TGACTGGCCGAATATAACATGAATC 59.299 40.000 0.00 0.00 0.00 2.52
659 661 0.312102 TCTCCTAGCGTCATCATGCG 59.688 55.000 0.00 0.00 39.81 4.73
663 665 1.554891 CTAGCGTCATCATGCGGCAG 61.555 60.000 9.25 0.79 39.81 4.85
666 668 2.863853 CGTCATCATGCGGCAGACG 61.864 63.158 22.18 22.18 44.64 4.18
675 677 3.942500 CGGCAGACGCATATCCAG 58.057 61.111 0.00 0.00 41.24 3.86
676 678 1.068083 CGGCAGACGCATATCCAGT 59.932 57.895 0.00 0.00 41.24 4.00
677 679 0.313987 CGGCAGACGCATATCCAGTA 59.686 55.000 0.00 0.00 41.24 2.74
678 680 1.269569 CGGCAGACGCATATCCAGTAA 60.270 52.381 0.00 0.00 41.24 2.24
679 681 2.801699 CGGCAGACGCATATCCAGTAAA 60.802 50.000 0.00 0.00 41.24 2.01
694 696 3.610911 CAGTAAAAACTGGCTCCCCTAG 58.389 50.000 0.00 0.00 34.28 3.02
715 729 4.775236 AGAAAATCCTCTCTACATGTGCC 58.225 43.478 9.11 0.00 0.00 5.01
740 754 4.388499 TGAGAGTTTCCGCCGGCC 62.388 66.667 23.46 6.12 0.00 6.13
775 789 2.792878 AGCTACTCGGTGACTGTTACT 58.207 47.619 2.63 0.00 0.00 2.24
781 795 1.536766 TCGGTGACTGTTACTGGTACG 59.463 52.381 11.11 2.50 0.00 3.67
782 796 1.536766 CGGTGACTGTTACTGGTACGA 59.463 52.381 3.75 0.00 0.00 3.43
783 797 2.163010 CGGTGACTGTTACTGGTACGAT 59.837 50.000 3.75 0.00 0.00 3.73
784 798 3.730061 CGGTGACTGTTACTGGTACGATC 60.730 52.174 3.75 0.00 0.00 3.69
785 799 3.423571 GTGACTGTTACTGGTACGATCG 58.576 50.000 14.88 14.88 0.00 3.69
786 800 3.125829 GTGACTGTTACTGGTACGATCGA 59.874 47.826 24.34 2.23 0.00 3.59
787 801 3.373130 TGACTGTTACTGGTACGATCGAG 59.627 47.826 24.34 11.21 0.00 4.04
788 802 2.097142 ACTGTTACTGGTACGATCGAGC 59.903 50.000 24.34 15.07 0.00 5.03
789 803 1.402968 TGTTACTGGTACGATCGAGCC 59.597 52.381 24.34 21.73 0.00 4.70
801 815 2.214181 ATCGAGCCGGACACACAGTC 62.214 60.000 5.05 0.00 46.83 3.51
824 838 5.915758 TCGTGGTTAATTCCAACAAATTTCG 59.084 36.000 0.00 0.00 39.34 3.46
825 839 5.915758 CGTGGTTAATTCCAACAAATTTCGA 59.084 36.000 0.00 0.00 39.34 3.71
834 848 4.278170 TCCAACAAATTTCGATTGTCAGCT 59.722 37.500 3.50 0.00 39.98 4.24
837 851 3.983344 ACAAATTTCGATTGTCAGCTTGC 59.017 39.130 0.00 0.00 36.28 4.01
844 858 2.072298 GATTGTCAGCTTGCGAAGAGT 58.928 47.619 0.00 0.00 0.00 3.24
848 862 3.462982 TGTCAGCTTGCGAAGAGTTTTA 58.537 40.909 0.00 0.00 0.00 1.52
850 864 2.480419 TCAGCTTGCGAAGAGTTTTAGC 59.520 45.455 0.00 0.00 0.00 3.09
865 879 4.774200 AGTTTTAGCCTGGCTGATTTCATT 59.226 37.500 30.83 3.84 40.10 2.57
875 889 7.153985 CCTGGCTGATTTCATTTCTTTTGTAA 58.846 34.615 0.00 0.00 0.00 2.41
933 947 6.297582 TGCCATTCAAAATTTCAAACCATCT 58.702 32.000 0.00 0.00 0.00 2.90
964 978 3.230134 TGCCCATTACAAAAGTTGCTCT 58.770 40.909 0.00 0.00 0.00 4.09
1411 4907 2.031944 CGTGATCATCTACGTCATCGGT 60.032 50.000 0.00 0.00 41.85 4.69
1481 4977 3.642503 CGGCCAAGGGGGTGTGTA 61.643 66.667 2.24 0.00 39.65 2.90
1579 5075 2.963371 GTGTCCTCGTTCGGAGCT 59.037 61.111 0.00 0.00 41.71 4.09
1903 5405 1.060622 GCTGTACGAGACGACGGAG 59.939 63.158 0.00 0.00 37.61 4.63
2560 6065 2.124612 AGCATGTGCATGGCGCTA 60.125 55.556 7.64 0.00 45.16 4.26
2634 6139 1.406447 GTGAAGAAGGTGACGACGAC 58.594 55.000 0.00 0.00 0.00 4.34
2762 6267 0.751643 GCCCATCGCCAACTGGTATT 60.752 55.000 0.00 0.00 37.57 1.89
2789 6294 4.832608 GGACCGCCGAAGCCGAAT 62.833 66.667 0.00 0.00 38.22 3.34
2800 6305 0.544697 AAGCCGAATACAACCCGGAT 59.455 50.000 0.73 0.00 45.58 4.18
2805 6310 1.813862 CGAATACAACCCGGATGCCAT 60.814 52.381 0.73 0.00 0.00 4.40
2829 6338 1.773052 AGGAGGTGATGATCCACATGG 59.227 52.381 0.00 0.00 39.56 3.66
2830 6339 1.602311 GAGGTGATGATCCACATGGC 58.398 55.000 0.00 0.00 39.56 4.40
2831 6340 0.921166 AGGTGATGATCCACATGGCA 59.079 50.000 0.00 0.00 39.56 4.92
2832 6341 1.027357 GGTGATGATCCACATGGCAC 58.973 55.000 0.00 0.00 39.56 5.01
2833 6342 1.682702 GGTGATGATCCACATGGCACA 60.683 52.381 0.00 4.32 39.56 4.57
2834 6343 3.013109 GGTGATGATCCACATGGCACAT 61.013 50.000 0.00 8.61 39.56 3.21
2866 6386 2.298729 TGATCGACCTGAATGTGTGTGA 59.701 45.455 0.00 0.00 0.00 3.58
2907 7634 7.383300 AGAACAAAATAGATTCAAAGCAAGCAC 59.617 33.333 0.00 0.00 0.00 4.40
2908 7635 6.514947 ACAAAATAGATTCAAAGCAAGCACA 58.485 32.000 0.00 0.00 0.00 4.57
2909 7636 7.156673 ACAAAATAGATTCAAAGCAAGCACAT 58.843 30.769 0.00 0.00 0.00 3.21
2910 7637 7.658575 ACAAAATAGATTCAAAGCAAGCACATT 59.341 29.630 0.00 0.00 0.00 2.71
2914 7641 6.579666 AGATTCAAAGCAAGCACATTAAGA 57.420 33.333 0.00 0.00 0.00 2.10
2915 7642 6.618811 AGATTCAAAGCAAGCACATTAAGAG 58.381 36.000 0.00 0.00 0.00 2.85
2916 7643 4.164822 TCAAAGCAAGCACATTAAGAGC 57.835 40.909 0.00 0.00 0.00 4.09
2917 7644 3.569277 TCAAAGCAAGCACATTAAGAGCA 59.431 39.130 0.00 0.00 36.17 4.26
2918 7645 4.219070 TCAAAGCAAGCACATTAAGAGCAT 59.781 37.500 0.00 0.00 36.17 3.79
2919 7646 4.367386 AAGCAAGCACATTAAGAGCATC 57.633 40.909 0.00 0.00 36.17 3.91
2930 7657 4.521075 GAGCATCTACAGCCGCAA 57.479 55.556 0.00 0.00 0.00 4.85
2955 7682 2.158682 ACAAATTTGGGCCCTCAAAACC 60.159 45.455 25.70 0.00 39.64 3.27
2957 7684 1.191489 ATTTGGGCCCTCAAAACCGG 61.191 55.000 25.70 0.00 39.64 5.28
2958 7685 2.299727 TTTGGGCCCTCAAAACCGGA 62.300 55.000 25.70 0.00 34.17 5.14
2981 7708 6.183360 GGACGGGCCTCAAAATTTATCATTTA 60.183 38.462 0.84 0.00 0.00 1.40
2982 7709 7.360113 ACGGGCCTCAAAATTTATCATTTAT 57.640 32.000 0.84 0.00 0.00 1.40
3042 7800 0.520404 GCCATGCATGACGATCATCC 59.480 55.000 28.31 1.12 34.28 3.51
3044 7802 1.543871 CCATGCATGACGATCATCCCA 60.544 52.381 28.31 0.00 34.28 4.37
3046 7804 2.174363 TGCATGACGATCATCCCATC 57.826 50.000 0.00 0.00 34.28 3.51
3048 7806 1.718396 CATGACGATCATCCCATCCG 58.282 55.000 0.00 0.00 34.28 4.18
3051 7809 0.962489 GACGATCATCCCATCCGTCT 59.038 55.000 0.00 0.00 44.10 4.18
3059 7817 2.186903 CCATCCGTCTTGGGTCGG 59.813 66.667 0.00 0.00 46.93 4.79
3062 7820 3.019003 ATCCGTCTTGGGTCGGCTG 62.019 63.158 0.00 0.00 45.44 4.85
3063 7821 3.691342 CCGTCTTGGGTCGGCTGA 61.691 66.667 0.00 0.00 40.28 4.26
3068 7826 3.241530 TTGGGTCGGCTGAGCTGT 61.242 61.111 23.21 0.00 42.30 4.40
3094 7852 4.419522 ACACACCGAAAATTGCTCATAC 57.580 40.909 0.00 0.00 0.00 2.39
3099 7857 5.354234 ACACCGAAAATTGCTCATACTTAGG 59.646 40.000 0.00 0.00 0.00 2.69
3104 7862 7.484959 CCGAAAATTGCTCATACTTAGGTTTTC 59.515 37.037 0.00 0.00 32.59 2.29
3105 7863 8.020819 CGAAAATTGCTCATACTTAGGTTTTCA 58.979 33.333 0.00 0.00 34.46 2.69
3106 7864 9.129209 GAAAATTGCTCATACTTAGGTTTTCAC 57.871 33.333 0.00 0.00 34.75 3.18
3107 7865 7.759489 AATTGCTCATACTTAGGTTTTCACA 57.241 32.000 0.00 0.00 0.00 3.58
3108 7866 6.554334 TTGCTCATACTTAGGTTTTCACAC 57.446 37.500 0.00 0.00 0.00 3.82
3111 7869 6.014070 TGCTCATACTTAGGTTTTCACACCTA 60.014 38.462 0.00 0.00 46.14 3.08
3152 7910 4.599047 GCGTGACGAGTTAGTATGAATCT 58.401 43.478 10.10 0.00 0.00 2.40
3193 7955 8.006967 AGATTTATAGTCAGGGTCTATCTCCT 57.993 38.462 0.00 0.00 31.64 3.69
3215 7977 5.476599 CCTTCACAAGGGAAACATTCATGTA 59.523 40.000 0.00 0.00 45.27 2.29
3218 7980 6.009589 TCACAAGGGAAACATTCATGTATGT 58.990 36.000 11.79 11.79 40.80 2.29
3220 7982 7.120579 TCACAAGGGAAACATTCATGTATGTAC 59.879 37.037 17.12 13.76 40.80 2.90
3246 8008 8.883954 TGCTTTTTATGAATCACAATTTGTCA 57.116 26.923 0.00 0.00 0.00 3.58
3294 8056 8.890410 AAAATCTACTGTTACTGTAGTAGGGA 57.110 34.615 22.48 9.13 44.06 4.20
3311 8073 7.540474 AGTAGGGATATCAACGTACATGAAT 57.460 36.000 4.83 0.00 32.14 2.57
3317 8079 6.923508 GGATATCAACGTACATGAATGAGACA 59.076 38.462 4.83 0.00 0.00 3.41
3321 8083 5.178623 TCAACGTACATGAATGAGACAAACC 59.821 40.000 0.00 0.00 0.00 3.27
3324 8086 4.929211 CGTACATGAATGAGACAAACCTGA 59.071 41.667 0.00 0.00 0.00 3.86
3327 8089 4.516698 ACATGAATGAGACAAACCTGACAC 59.483 41.667 0.00 0.00 0.00 3.67
3329 8091 4.380531 TGAATGAGACAAACCTGACACTC 58.619 43.478 0.00 0.00 0.00 3.51
3330 8092 2.509052 TGAGACAAACCTGACACTCG 57.491 50.000 0.00 0.00 0.00 4.18
3331 8093 2.028876 TGAGACAAACCTGACACTCGA 58.971 47.619 0.00 0.00 0.00 4.04
3332 8094 2.223735 TGAGACAAACCTGACACTCGAC 60.224 50.000 0.00 0.00 0.00 4.20
3333 8095 1.129326 GACAAACCTGACACTCGACG 58.871 55.000 0.00 0.00 0.00 5.12
3334 8096 0.742505 ACAAACCTGACACTCGACGA 59.257 50.000 0.00 0.00 0.00 4.20
3335 8097 1.135527 ACAAACCTGACACTCGACGAA 59.864 47.619 0.00 0.00 0.00 3.85
3336 8098 1.521423 CAAACCTGACACTCGACGAAC 59.479 52.381 0.00 0.00 0.00 3.95
3337 8099 0.742505 AACCTGACACTCGACGAACA 59.257 50.000 0.00 0.00 0.00 3.18
3338 8100 0.742505 ACCTGACACTCGACGAACAA 59.257 50.000 0.00 0.00 0.00 2.83
3339 8101 1.340248 ACCTGACACTCGACGAACAAT 59.660 47.619 0.00 0.00 0.00 2.71
3340 8102 1.986378 CCTGACACTCGACGAACAATC 59.014 52.381 0.00 0.00 0.00 2.67
3341 8103 2.607038 CCTGACACTCGACGAACAATCA 60.607 50.000 0.00 0.11 0.00 2.57
3342 8104 3.245797 CTGACACTCGACGAACAATCAT 58.754 45.455 0.00 0.00 0.00 2.45
3343 8105 3.242518 TGACACTCGACGAACAATCATC 58.757 45.455 0.00 0.00 0.00 2.92
3344 8106 3.242518 GACACTCGACGAACAATCATCA 58.757 45.455 0.00 0.00 0.00 3.07
3345 8107 3.245797 ACACTCGACGAACAATCATCAG 58.754 45.455 0.00 0.00 0.00 2.90
3371 8133 2.543848 TGAAATGCAGTCGAGTGTCAAC 59.456 45.455 20.92 14.01 0.00 3.18
3378 8140 3.610242 GCAGTCGAGTGTCAACTTATCTG 59.390 47.826 20.92 4.44 36.52 2.90
3379 8141 4.616143 GCAGTCGAGTGTCAACTTATCTGA 60.616 45.833 20.92 0.00 36.52 3.27
3380 8142 4.854291 CAGTCGAGTGTCAACTTATCTGAC 59.146 45.833 12.29 0.00 42.94 3.51
3381 8143 4.762765 AGTCGAGTGTCAACTTATCTGACT 59.237 41.667 0.00 0.00 43.03 3.41
3382 8144 5.241949 AGTCGAGTGTCAACTTATCTGACTT 59.758 40.000 0.00 0.00 43.03 3.01
3388 8150 5.404366 GTGTCAACTTATCTGACTTACGCAA 59.596 40.000 4.74 0.00 43.03 4.85
3390 8152 5.404366 GTCAACTTATCTGACTTACGCAACA 59.596 40.000 0.00 0.00 40.10 3.33
3429 8192 0.249031 AACAACAAGAAGCTTGCCGC 60.249 50.000 2.10 0.00 39.57 6.53
3466 8229 0.392060 ATTTAAGCCGGTCGGTGTCC 60.392 55.000 11.25 0.00 37.65 4.02
3476 8239 4.456253 CGGTGTCCGTCTCGTCCG 62.456 72.222 0.00 0.00 42.73 4.79
3477 8240 4.112341 GGTGTCCGTCTCGTCCGG 62.112 72.222 0.00 0.00 46.83 5.14
3478 8241 4.112341 GTGTCCGTCTCGTCCGGG 62.112 72.222 0.00 0.00 45.51 5.73
3483 8246 4.180946 CGTCTCGTCCGGGCAGAG 62.181 72.222 18.06 18.06 0.00 3.35
3484 8247 3.063084 GTCTCGTCCGGGCAGAGT 61.063 66.667 21.56 0.00 33.96 3.24
3485 8248 1.748122 GTCTCGTCCGGGCAGAGTA 60.748 63.158 21.56 10.27 33.96 2.59
3486 8249 1.001764 TCTCGTCCGGGCAGAGTAA 60.002 57.895 21.56 6.53 33.96 2.24
3487 8250 1.030488 TCTCGTCCGGGCAGAGTAAG 61.030 60.000 21.56 4.10 33.96 2.34
3488 8251 1.303888 TCGTCCGGGCAGAGTAAGT 60.304 57.895 6.96 0.00 0.00 2.24
3489 8252 0.035152 TCGTCCGGGCAGAGTAAGTA 60.035 55.000 6.96 0.00 0.00 2.24
3490 8253 1.030457 CGTCCGGGCAGAGTAAGTAT 58.970 55.000 6.96 0.00 0.00 2.12
3491 8254 2.158769 TCGTCCGGGCAGAGTAAGTATA 60.159 50.000 6.96 0.00 0.00 1.47
3492 8255 2.620115 CGTCCGGGCAGAGTAAGTATAA 59.380 50.000 6.96 0.00 0.00 0.98
3494 8257 4.440525 CGTCCGGGCAGAGTAAGTATAAAA 60.441 45.833 6.96 0.00 0.00 1.52
3495 8258 5.422145 GTCCGGGCAGAGTAAGTATAAAAA 58.578 41.667 0.00 0.00 0.00 1.94
3497 8260 7.212274 GTCCGGGCAGAGTAAGTATAAAAATA 58.788 38.462 0.00 0.00 0.00 1.40
3498 8261 7.876582 GTCCGGGCAGAGTAAGTATAAAAATAT 59.123 37.037 0.00 0.00 0.00 1.28
3499 8262 9.092338 TCCGGGCAGAGTAAGTATAAAAATATA 57.908 33.333 0.00 0.00 0.00 0.86
3500 8263 9.715121 CCGGGCAGAGTAAGTATAAAAATATAA 57.285 33.333 0.00 0.00 0.00 0.98
3707 9751 3.333219 CCAGAAGCCTGCTCCCCA 61.333 66.667 0.00 0.00 39.07 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.120579 TGTCACCGCATTCTATTTGACTTATTT 59.879 33.333 0.00 0.00 35.45 1.40
15 16 6.597672 TGTCACCGCATTCTATTTGACTTATT 59.402 34.615 0.00 0.00 35.45 1.40
19 20 3.684788 GTGTCACCGCATTCTATTTGACT 59.315 43.478 0.00 0.00 35.45 3.41
20 21 3.435327 TGTGTCACCGCATTCTATTTGAC 59.565 43.478 0.00 0.00 35.08 3.18
21 22 3.669536 TGTGTCACCGCATTCTATTTGA 58.330 40.909 0.00 0.00 0.00 2.69
22 23 4.418013 TTGTGTCACCGCATTCTATTTG 57.582 40.909 0.00 0.00 0.00 2.32
24 25 5.446143 TTTTTGTGTCACCGCATTCTATT 57.554 34.783 0.00 0.00 0.00 1.73
45 46 7.181845 TGGGCCTGATACCTTTTTATCAATTTT 59.818 33.333 4.53 0.00 37.89 1.82
47 48 6.201591 TGGGCCTGATACCTTTTTATCAATT 58.798 36.000 4.53 0.00 37.89 2.32
49 50 5.044476 TCTGGGCCTGATACCTTTTTATCAA 60.044 40.000 9.30 0.00 37.89 2.57
50 51 4.476846 TCTGGGCCTGATACCTTTTTATCA 59.523 41.667 9.30 0.00 36.34 2.15
51 52 5.048846 TCTGGGCCTGATACCTTTTTATC 57.951 43.478 9.30 0.00 0.00 1.75
52 53 5.466127 TTCTGGGCCTGATACCTTTTTAT 57.534 39.130 14.32 0.00 0.00 1.40
54 55 3.825908 TTCTGGGCCTGATACCTTTTT 57.174 42.857 14.32 0.00 0.00 1.94
55 56 3.825908 TTTCTGGGCCTGATACCTTTT 57.174 42.857 14.32 0.00 0.00 2.27
56 57 3.825908 TTTTCTGGGCCTGATACCTTT 57.174 42.857 14.32 0.00 0.00 3.11
57 58 5.134339 TCATATTTTCTGGGCCTGATACCTT 59.866 40.000 14.32 1.27 0.00 3.50
58 59 4.665009 TCATATTTTCTGGGCCTGATACCT 59.335 41.667 14.32 2.73 0.00 3.08
59 60 4.985538 TCATATTTTCTGGGCCTGATACC 58.014 43.478 14.32 0.00 0.00 2.73
60 61 5.474876 CCTTCATATTTTCTGGGCCTGATAC 59.525 44.000 14.32 0.00 0.00 2.24
61 62 5.372363 TCCTTCATATTTTCTGGGCCTGATA 59.628 40.000 14.32 6.71 0.00 2.15
62 63 4.168675 TCCTTCATATTTTCTGGGCCTGAT 59.831 41.667 14.32 2.08 0.00 2.90
63 64 3.527253 TCCTTCATATTTTCTGGGCCTGA 59.473 43.478 9.30 9.30 0.00 3.86
64 65 3.887716 CTCCTTCATATTTTCTGGGCCTG 59.112 47.826 4.53 4.06 0.00 4.85
65 66 3.788142 TCTCCTTCATATTTTCTGGGCCT 59.212 43.478 4.53 0.00 0.00 5.19
66 67 4.170468 TCTCCTTCATATTTTCTGGGCC 57.830 45.455 0.00 0.00 0.00 5.80
67 68 4.339530 GGTTCTCCTTCATATTTTCTGGGC 59.660 45.833 0.00 0.00 0.00 5.36
68 69 5.591877 CAGGTTCTCCTTCATATTTTCTGGG 59.408 44.000 0.00 0.00 43.07 4.45
69 70 5.591877 CCAGGTTCTCCTTCATATTTTCTGG 59.408 44.000 0.00 0.00 43.07 3.86
70 71 5.591877 CCCAGGTTCTCCTTCATATTTTCTG 59.408 44.000 0.00 0.00 43.07 3.02
71 72 5.254032 ACCCAGGTTCTCCTTCATATTTTCT 59.746 40.000 0.00 0.00 43.07 2.52
72 73 5.510430 ACCCAGGTTCTCCTTCATATTTTC 58.490 41.667 0.00 0.00 43.07 2.29
73 74 5.536497 ACCCAGGTTCTCCTTCATATTTT 57.464 39.130 0.00 0.00 43.07 1.82
74 75 5.104067 GGTACCCAGGTTCTCCTTCATATTT 60.104 44.000 0.00 0.00 43.07 1.40
75 76 4.412528 GGTACCCAGGTTCTCCTTCATATT 59.587 45.833 0.00 0.00 43.07 1.28
76 77 3.974642 GGTACCCAGGTTCTCCTTCATAT 59.025 47.826 0.00 0.00 43.07 1.78
77 78 3.246203 TGGTACCCAGGTTCTCCTTCATA 60.246 47.826 10.07 0.00 43.07 2.15
78 79 2.197465 GGTACCCAGGTTCTCCTTCAT 58.803 52.381 0.00 0.00 43.07 2.57
79 80 1.132657 TGGTACCCAGGTTCTCCTTCA 60.133 52.381 10.07 0.00 43.07 3.02
80 81 1.652947 TGGTACCCAGGTTCTCCTTC 58.347 55.000 10.07 0.00 43.07 3.46
81 82 3.906115 TGGTACCCAGGTTCTCCTT 57.094 52.632 10.07 0.00 43.07 3.36
94 95 1.939838 GCATATAGGGTGCGCTGGTAC 60.940 57.143 9.73 0.00 32.29 3.34
95 96 0.320374 GCATATAGGGTGCGCTGGTA 59.680 55.000 9.73 0.00 32.29 3.25
96 97 1.071471 GCATATAGGGTGCGCTGGT 59.929 57.895 9.73 0.00 32.29 4.00
97 98 0.534877 TTGCATATAGGGTGCGCTGG 60.535 55.000 9.73 0.00 45.37 4.85
98 99 1.265095 CTTTGCATATAGGGTGCGCTG 59.735 52.381 9.73 0.00 45.37 5.18
99 100 1.140852 TCTTTGCATATAGGGTGCGCT 59.859 47.619 9.73 0.00 45.37 5.92
100 101 1.264288 GTCTTTGCATATAGGGTGCGC 59.736 52.381 0.00 0.00 45.37 6.09
101 102 2.560504 TGTCTTTGCATATAGGGTGCG 58.439 47.619 0.00 0.00 45.37 5.34
102 103 3.947834 ACTTGTCTTTGCATATAGGGTGC 59.052 43.478 0.00 0.00 42.81 5.01
103 104 7.807977 ATTACTTGTCTTTGCATATAGGGTG 57.192 36.000 0.00 0.00 0.00 4.61
104 105 8.052748 TGAATTACTTGTCTTTGCATATAGGGT 58.947 33.333 0.00 0.00 0.00 4.34
105 106 8.450578 TGAATTACTTGTCTTTGCATATAGGG 57.549 34.615 0.00 0.00 0.00 3.53
186 187 9.791820 TCTCTGACGAATATTTTTGTACGATTA 57.208 29.630 0.00 0.00 29.18 1.75
187 188 8.697846 TCTCTGACGAATATTTTTGTACGATT 57.302 30.769 0.00 0.00 29.18 3.34
188 189 8.697846 TTCTCTGACGAATATTTTTGTACGAT 57.302 30.769 0.00 0.00 29.18 3.73
189 190 8.592155 CATTCTCTGACGAATATTTTTGTACGA 58.408 33.333 0.00 0.00 32.61 3.43
190 191 8.592155 TCATTCTCTGACGAATATTTTTGTACG 58.408 33.333 0.00 0.00 32.61 3.67
191 192 9.690434 GTCATTCTCTGACGAATATTTTTGTAC 57.310 33.333 0.00 0.00 44.58 2.90
206 207 6.441924 AGGATACAAAGGAAGTCATTCTCTGA 59.558 38.462 0.00 0.00 41.41 3.27
207 208 6.538021 CAGGATACAAAGGAAGTCATTCTCTG 59.462 42.308 0.00 0.00 41.41 3.35
208 209 6.352565 CCAGGATACAAAGGAAGTCATTCTCT 60.353 42.308 0.00 0.00 41.41 3.10
209 210 5.819901 CCAGGATACAAAGGAAGTCATTCTC 59.180 44.000 0.00 0.00 41.41 2.87
210 211 5.488919 TCCAGGATACAAAGGAAGTCATTCT 59.511 40.000 0.00 0.00 41.41 2.40
211 212 5.745227 TCCAGGATACAAAGGAAGTCATTC 58.255 41.667 0.00 0.00 41.41 2.67
212 213 5.779241 TCCAGGATACAAAGGAAGTCATT 57.221 39.130 0.00 0.00 41.41 2.57
213 214 5.453903 CGATCCAGGATACAAAGGAAGTCAT 60.454 44.000 0.32 0.00 37.73 3.06
214 215 4.141937 CGATCCAGGATACAAAGGAAGTCA 60.142 45.833 0.32 0.00 37.73 3.41
215 216 4.099573 TCGATCCAGGATACAAAGGAAGTC 59.900 45.833 0.32 0.00 37.73 3.01
216 217 4.030913 TCGATCCAGGATACAAAGGAAGT 58.969 43.478 0.32 0.00 37.73 3.01
217 218 4.672587 TCGATCCAGGATACAAAGGAAG 57.327 45.455 0.32 0.00 37.73 3.46
218 219 4.714802 TCTTCGATCCAGGATACAAAGGAA 59.285 41.667 0.32 0.00 37.73 3.36
219 220 4.286707 TCTTCGATCCAGGATACAAAGGA 58.713 43.478 0.32 0.00 38.41 3.36
220 221 4.672587 TCTTCGATCCAGGATACAAAGG 57.327 45.455 0.32 0.00 41.41 3.11
221 222 6.777526 GAATCTTCGATCCAGGATACAAAG 57.222 41.667 0.32 6.75 41.41 2.77
249 250 9.537192 TGTATAGTGCTTGTATATAGCGTTTTT 57.463 29.630 5.63 0.00 41.54 1.94
250 251 8.975439 GTGTATAGTGCTTGTATATAGCGTTTT 58.025 33.333 5.63 0.00 41.54 2.43
251 252 7.325338 CGTGTATAGTGCTTGTATATAGCGTTT 59.675 37.037 5.63 0.00 41.54 3.60
252 253 6.800408 CGTGTATAGTGCTTGTATATAGCGTT 59.200 38.462 5.63 0.00 41.54 4.84
253 254 6.312487 CGTGTATAGTGCTTGTATATAGCGT 58.688 40.000 5.63 0.00 41.54 5.07
254 255 5.227391 GCGTGTATAGTGCTTGTATATAGCG 59.773 44.000 5.63 0.00 41.54 4.26
255 256 6.323266 AGCGTGTATAGTGCTTGTATATAGC 58.677 40.000 3.54 3.54 34.80 2.97
259 260 9.783256 CAATATAGCGTGTATAGTGCTTGTATA 57.217 33.333 0.00 0.00 40.06 1.47
260 261 8.304596 ACAATATAGCGTGTATAGTGCTTGTAT 58.695 33.333 11.78 0.00 40.06 2.29
261 262 7.654568 ACAATATAGCGTGTATAGTGCTTGTA 58.345 34.615 11.78 0.00 40.06 2.41
262 263 6.513180 ACAATATAGCGTGTATAGTGCTTGT 58.487 36.000 11.78 6.26 40.06 3.16
263 264 6.183359 CGACAATATAGCGTGTATAGTGCTTG 60.183 42.308 11.78 5.82 40.06 4.01
264 265 5.856986 CGACAATATAGCGTGTATAGTGCTT 59.143 40.000 11.78 0.00 40.06 3.91
265 266 5.391449 CGACAATATAGCGTGTATAGTGCT 58.609 41.667 11.78 0.00 42.58 4.40
266 267 4.030306 GCGACAATATAGCGTGTATAGTGC 59.970 45.833 11.78 6.56 31.07 4.40
267 268 4.557690 GGCGACAATATAGCGTGTATAGTG 59.442 45.833 10.80 10.80 33.32 2.74
268 269 4.216902 TGGCGACAATATAGCGTGTATAGT 59.783 41.667 0.00 0.00 37.44 2.12
269 270 4.729595 TGGCGACAATATAGCGTGTATAG 58.270 43.478 0.00 0.00 37.44 1.31
270 271 4.769859 TGGCGACAATATAGCGTGTATA 57.230 40.909 0.00 0.00 37.44 1.47
271 272 3.653539 TGGCGACAATATAGCGTGTAT 57.346 42.857 0.00 0.00 37.44 2.29
285 286 5.062934 GGCAAAAAGGTAAATTTATGGCGAC 59.937 40.000 0.31 0.00 0.00 5.19
286 287 5.172205 GGCAAAAAGGTAAATTTATGGCGA 58.828 37.500 0.31 0.00 0.00 5.54
287 288 4.331443 GGGCAAAAAGGTAAATTTATGGCG 59.669 41.667 12.09 0.00 0.00 5.69
288 289 5.353956 CAGGGCAAAAAGGTAAATTTATGGC 59.646 40.000 10.67 10.67 0.00 4.40
289 290 6.706295 TCAGGGCAAAAAGGTAAATTTATGG 58.294 36.000 0.31 0.00 0.00 2.74
290 291 7.877612 ACTTCAGGGCAAAAAGGTAAATTTATG 59.122 33.333 0.31 0.00 0.00 1.90
291 292 7.973402 ACTTCAGGGCAAAAAGGTAAATTTAT 58.027 30.769 0.31 0.00 0.00 1.40
292 293 7.070074 TGACTTCAGGGCAAAAAGGTAAATTTA 59.930 33.333 0.00 0.00 0.00 1.40
293 294 6.126911 TGACTTCAGGGCAAAAAGGTAAATTT 60.127 34.615 0.00 0.00 0.00 1.82
294 295 5.365314 TGACTTCAGGGCAAAAAGGTAAATT 59.635 36.000 0.00 0.00 0.00 1.82
295 296 4.898861 TGACTTCAGGGCAAAAAGGTAAAT 59.101 37.500 0.00 0.00 0.00 1.40
296 297 4.282496 TGACTTCAGGGCAAAAAGGTAAA 58.718 39.130 0.00 0.00 0.00 2.01
297 298 3.904717 TGACTTCAGGGCAAAAAGGTAA 58.095 40.909 0.00 0.00 0.00 2.85
298 299 3.586470 TGACTTCAGGGCAAAAAGGTA 57.414 42.857 0.00 0.00 0.00 3.08
299 300 2.452600 TGACTTCAGGGCAAAAAGGT 57.547 45.000 0.00 0.00 0.00 3.50
306 307 3.010027 TGGTTCATATTGACTTCAGGGCA 59.990 43.478 0.00 0.00 0.00 5.36
307 308 3.620488 TGGTTCATATTGACTTCAGGGC 58.380 45.455 0.00 0.00 0.00 5.19
308 309 6.377996 TGAAATGGTTCATATTGACTTCAGGG 59.622 38.462 0.00 0.00 38.88 4.45
309 310 7.395190 TGAAATGGTTCATATTGACTTCAGG 57.605 36.000 0.00 0.00 38.88 3.86
322 323 2.971330 AGTTTGGGCATGAAATGGTTCA 59.029 40.909 0.00 0.00 46.86 3.18
323 324 3.683365 AGTTTGGGCATGAAATGGTTC 57.317 42.857 0.00 0.00 46.86 3.62
324 325 4.436113 AAAGTTTGGGCATGAAATGGTT 57.564 36.364 0.00 0.00 46.86 3.67
325 326 4.436113 AAAAGTTTGGGCATGAAATGGT 57.564 36.364 0.00 0.00 46.86 3.55
326 327 8.040132 TCTATAAAAAGTTTGGGCATGAAATGG 58.960 33.333 0.00 0.00 46.86 3.16
328 329 9.657419 CTTCTATAAAAAGTTTGGGCATGAAAT 57.343 29.630 0.00 0.00 0.00 2.17
329 330 8.646900 ACTTCTATAAAAAGTTTGGGCATGAAA 58.353 29.630 0.00 0.00 33.19 2.69
330 331 8.189119 ACTTCTATAAAAAGTTTGGGCATGAA 57.811 30.769 0.00 0.00 33.19 2.57
331 332 7.775053 ACTTCTATAAAAAGTTTGGGCATGA 57.225 32.000 0.00 0.00 33.19 3.07
332 333 8.519526 TGTACTTCTATAAAAAGTTTGGGCATG 58.480 33.333 5.71 0.00 38.00 4.06
333 334 8.644374 TGTACTTCTATAAAAAGTTTGGGCAT 57.356 30.769 5.71 0.00 38.00 4.40
334 335 8.466617 TTGTACTTCTATAAAAAGTTTGGGCA 57.533 30.769 5.71 0.00 38.00 5.36
356 357 9.645128 TTGGAATCAAATATGATCAGGTATTGT 57.355 29.630 0.09 0.00 45.60 2.71
361 362 9.258629 TCTTTTTGGAATCAAATATGATCAGGT 57.741 29.630 0.09 0.00 45.60 4.00
406 407 9.909644 TGCGCCAAAAAGTTTAGTAATTAAATA 57.090 25.926 4.18 0.00 33.99 1.40
407 408 8.819643 TGCGCCAAAAAGTTTAGTAATTAAAT 57.180 26.923 4.18 0.00 33.99 1.40
408 409 8.819643 ATGCGCCAAAAAGTTTAGTAATTAAA 57.180 26.923 4.18 0.00 0.00 1.52
411 412 9.730420 CTATATGCGCCAAAAAGTTTAGTAATT 57.270 29.630 4.18 0.00 0.00 1.40
412 413 8.349983 CCTATATGCGCCAAAAAGTTTAGTAAT 58.650 33.333 4.18 0.00 0.00 1.89
413 414 7.201750 CCCTATATGCGCCAAAAAGTTTAGTAA 60.202 37.037 4.18 0.00 0.00 2.24
414 415 6.261381 CCCTATATGCGCCAAAAAGTTTAGTA 59.739 38.462 4.18 0.00 0.00 1.82
415 416 5.067283 CCCTATATGCGCCAAAAAGTTTAGT 59.933 40.000 4.18 0.00 0.00 2.24
416 417 5.067283 ACCCTATATGCGCCAAAAAGTTTAG 59.933 40.000 4.18 0.00 0.00 1.85
417 418 4.951094 ACCCTATATGCGCCAAAAAGTTTA 59.049 37.500 4.18 0.00 0.00 2.01
418 419 3.767131 ACCCTATATGCGCCAAAAAGTTT 59.233 39.130 4.18 0.00 0.00 2.66
419 420 3.130340 CACCCTATATGCGCCAAAAAGTT 59.870 43.478 4.18 0.00 0.00 2.66
420 421 2.687935 CACCCTATATGCGCCAAAAAGT 59.312 45.455 4.18 0.00 0.00 2.66
421 422 2.543653 GCACCCTATATGCGCCAAAAAG 60.544 50.000 4.18 0.00 32.45 2.27
422 423 1.407258 GCACCCTATATGCGCCAAAAA 59.593 47.619 4.18 0.00 32.45 1.94
423 424 1.028905 GCACCCTATATGCGCCAAAA 58.971 50.000 4.18 0.00 32.45 2.44
424 425 2.714259 GCACCCTATATGCGCCAAA 58.286 52.632 4.18 0.00 32.45 3.28
425 426 4.473643 GCACCCTATATGCGCCAA 57.526 55.556 4.18 0.00 32.45 4.52
430 431 2.162338 TACCCGCGCACCCTATATGC 62.162 60.000 8.75 0.00 39.81 3.14
431 432 0.389426 GTACCCGCGCACCCTATATG 60.389 60.000 8.75 0.00 0.00 1.78
432 433 1.538687 GGTACCCGCGCACCCTATAT 61.539 60.000 8.75 0.00 0.00 0.86
433 434 2.202395 GGTACCCGCGCACCCTATA 61.202 63.158 8.75 0.00 0.00 1.31
434 435 3.543641 GGTACCCGCGCACCCTAT 61.544 66.667 8.75 0.00 0.00 2.57
435 436 4.764771 AGGTACCCGCGCACCCTA 62.765 66.667 8.74 0.00 35.25 3.53
438 439 2.694829 CTATCAGGTACCCGCGCACC 62.695 65.000 8.74 7.48 34.86 5.01
439 440 1.299926 CTATCAGGTACCCGCGCAC 60.300 63.158 8.74 0.00 0.00 5.34
440 441 3.125607 CTATCAGGTACCCGCGCA 58.874 61.111 8.74 0.00 0.00 6.09
441 442 2.355956 GCTATCAGGTACCCGCGC 60.356 66.667 8.74 0.00 0.00 6.86
442 443 1.299926 GTGCTATCAGGTACCCGCG 60.300 63.158 8.74 0.00 0.00 6.46
443 444 1.069258 GGTGCTATCAGGTACCCGC 59.931 63.158 8.74 4.59 36.24 6.13
444 445 0.828022 TTGGTGCTATCAGGTACCCG 59.172 55.000 8.74 0.00 40.48 5.28
445 446 1.838077 ACTTGGTGCTATCAGGTACCC 59.162 52.381 8.74 0.00 40.48 3.69
446 447 3.532542 GAACTTGGTGCTATCAGGTACC 58.467 50.000 2.73 2.73 41.35 3.34
447 448 3.532542 GGAACTTGGTGCTATCAGGTAC 58.467 50.000 0.00 0.00 0.00 3.34
448 449 2.504175 GGGAACTTGGTGCTATCAGGTA 59.496 50.000 0.00 0.00 0.00 3.08
449 450 1.282157 GGGAACTTGGTGCTATCAGGT 59.718 52.381 0.00 0.00 0.00 4.00
450 451 1.743772 CGGGAACTTGGTGCTATCAGG 60.744 57.143 0.00 0.00 0.00 3.86
451 452 1.066143 ACGGGAACTTGGTGCTATCAG 60.066 52.381 0.00 0.00 0.00 2.90
452 453 0.981183 ACGGGAACTTGGTGCTATCA 59.019 50.000 0.00 0.00 0.00 2.15
453 454 1.653151 GACGGGAACTTGGTGCTATC 58.347 55.000 0.00 0.00 0.00 2.08
454 455 0.252197 GGACGGGAACTTGGTGCTAT 59.748 55.000 0.00 0.00 0.00 2.97
455 456 1.122632 TGGACGGGAACTTGGTGCTA 61.123 55.000 0.00 0.00 0.00 3.49
456 457 1.779061 ATGGACGGGAACTTGGTGCT 61.779 55.000 0.00 0.00 0.00 4.40
457 458 1.303317 ATGGACGGGAACTTGGTGC 60.303 57.895 0.00 0.00 0.00 5.01
458 459 0.036164 TGATGGACGGGAACTTGGTG 59.964 55.000 0.00 0.00 0.00 4.17
459 460 0.324943 CTGATGGACGGGAACTTGGT 59.675 55.000 0.00 0.00 0.00 3.67
460 461 3.159298 CTGATGGACGGGAACTTGG 57.841 57.895 0.00 0.00 0.00 3.61
467 468 1.705002 TAATGGGCCTGATGGACGGG 61.705 60.000 4.53 0.00 44.25 5.28
468 469 0.535102 GTAATGGGCCTGATGGACGG 60.535 60.000 4.53 0.00 44.25 4.79
469 470 0.469917 AGTAATGGGCCTGATGGACG 59.530 55.000 4.53 0.00 44.25 4.79
470 471 4.042187 AGAATAGTAATGGGCCTGATGGAC 59.958 45.833 4.53 0.00 41.93 4.02
471 472 4.242811 AGAATAGTAATGGGCCTGATGGA 58.757 43.478 4.53 0.00 34.57 3.41
472 473 4.647564 AGAATAGTAATGGGCCTGATGG 57.352 45.455 4.53 0.00 0.00 3.51
473 474 5.491982 GGTAGAATAGTAATGGGCCTGATG 58.508 45.833 4.53 0.00 0.00 3.07
474 475 4.223032 CGGTAGAATAGTAATGGGCCTGAT 59.777 45.833 4.53 0.00 0.00 2.90
475 476 3.576982 CGGTAGAATAGTAATGGGCCTGA 59.423 47.826 4.53 0.00 0.00 3.86
476 477 3.323979 ACGGTAGAATAGTAATGGGCCTG 59.676 47.826 4.53 0.00 0.00 4.85
477 478 3.584294 ACGGTAGAATAGTAATGGGCCT 58.416 45.455 4.53 0.00 0.00 5.19
478 479 5.672421 ATACGGTAGAATAGTAATGGGCC 57.328 43.478 0.00 0.00 0.00 5.80
479 480 6.461640 ACAATACGGTAGAATAGTAATGGGC 58.538 40.000 0.00 0.00 0.00 5.36
486 487 8.853126 TGCAGTAATACAATACGGTAGAATAGT 58.147 33.333 0.00 0.00 0.00 2.12
487 488 9.856488 ATGCAGTAATACAATACGGTAGAATAG 57.144 33.333 0.00 0.00 0.00 1.73
488 489 9.634163 CATGCAGTAATACAATACGGTAGAATA 57.366 33.333 0.00 0.00 0.00 1.75
489 490 8.148351 ACATGCAGTAATACAATACGGTAGAAT 58.852 33.333 0.00 0.00 0.00 2.40
490 491 7.436970 CACATGCAGTAATACAATACGGTAGAA 59.563 37.037 0.00 0.00 0.00 2.10
491 492 6.921307 CACATGCAGTAATACAATACGGTAGA 59.079 38.462 0.00 0.00 0.00 2.59
492 493 6.700081 ACACATGCAGTAATACAATACGGTAG 59.300 38.462 0.00 0.00 0.00 3.18
493 494 6.575267 ACACATGCAGTAATACAATACGGTA 58.425 36.000 0.00 0.00 0.00 4.02
494 495 5.424757 ACACATGCAGTAATACAATACGGT 58.575 37.500 0.00 0.00 0.00 4.83
495 496 5.984233 ACACATGCAGTAATACAATACGG 57.016 39.130 0.00 0.00 0.00 4.02
496 497 7.458038 TGTACACATGCAGTAATACAATACG 57.542 36.000 0.00 0.00 31.56 3.06
508 509 1.336795 TGTCCGACTGTACACATGCAG 60.337 52.381 0.00 0.00 43.70 4.41
509 510 0.676736 TGTCCGACTGTACACATGCA 59.323 50.000 0.00 0.00 0.00 3.96
510 511 1.790755 TTGTCCGACTGTACACATGC 58.209 50.000 0.00 0.00 0.00 4.06
511 512 3.390135 AGTTTGTCCGACTGTACACATG 58.610 45.455 0.00 0.00 0.00 3.21
512 513 3.746045 AGTTTGTCCGACTGTACACAT 57.254 42.857 0.00 0.00 0.00 3.21
513 514 3.530265 AAGTTTGTCCGACTGTACACA 57.470 42.857 0.00 0.00 0.00 3.72
514 515 3.619929 ACAAAGTTTGTCCGACTGTACAC 59.380 43.478 15.58 0.00 40.56 2.90
515 516 3.864243 ACAAAGTTTGTCCGACTGTACA 58.136 40.909 15.58 0.00 40.56 2.90
527 528 7.935338 AGCAAATCAATGTAGACAAAGTTTG 57.065 32.000 14.13 14.13 0.00 2.93
528 529 8.819974 CAAAGCAAATCAATGTAGACAAAGTTT 58.180 29.630 0.00 0.00 0.00 2.66
529 530 7.042523 GCAAAGCAAATCAATGTAGACAAAGTT 60.043 33.333 0.00 0.00 0.00 2.66
530 531 6.421801 GCAAAGCAAATCAATGTAGACAAAGT 59.578 34.615 0.00 0.00 0.00 2.66
531 532 6.421501 TGCAAAGCAAATCAATGTAGACAAAG 59.578 34.615 0.00 0.00 34.76 2.77
532 533 6.279123 TGCAAAGCAAATCAATGTAGACAAA 58.721 32.000 0.00 0.00 34.76 2.83
533 534 5.840715 TGCAAAGCAAATCAATGTAGACAA 58.159 33.333 0.00 0.00 34.76 3.18
534 535 5.450592 TGCAAAGCAAATCAATGTAGACA 57.549 34.783 0.00 0.00 34.76 3.41
535 536 9.173939 GTATATGCAAAGCAAATCAATGTAGAC 57.826 33.333 0.00 0.00 43.62 2.59
536 537 8.901793 TGTATATGCAAAGCAAATCAATGTAGA 58.098 29.630 0.00 0.00 43.62 2.59
537 538 9.177304 CTGTATATGCAAAGCAAATCAATGTAG 57.823 33.333 0.00 0.00 43.62 2.74
538 539 7.648908 GCTGTATATGCAAAGCAAATCAATGTA 59.351 33.333 0.00 0.00 43.62 2.29
539 540 6.477688 GCTGTATATGCAAAGCAAATCAATGT 59.522 34.615 0.00 0.00 43.62 2.71
540 541 6.345487 CGCTGTATATGCAAAGCAAATCAATG 60.345 38.462 0.00 0.00 43.62 2.82
541 542 5.688621 CGCTGTATATGCAAAGCAAATCAAT 59.311 36.000 0.00 0.00 43.62 2.57
542 543 5.036090 CGCTGTATATGCAAAGCAAATCAA 58.964 37.500 0.00 0.00 43.62 2.57
543 544 4.096231 ACGCTGTATATGCAAAGCAAATCA 59.904 37.500 0.00 0.00 43.62 2.57
544 545 4.601019 ACGCTGTATATGCAAAGCAAATC 58.399 39.130 0.00 0.00 43.62 2.17
545 546 4.637483 ACGCTGTATATGCAAAGCAAAT 57.363 36.364 0.00 0.00 43.62 2.32
546 547 5.505489 CCATACGCTGTATATGCAAAGCAAA 60.505 40.000 0.00 0.00 43.62 3.68
547 548 4.024133 CCATACGCTGTATATGCAAAGCAA 60.024 41.667 0.00 0.00 43.62 3.91
548 549 3.498018 CCATACGCTGTATATGCAAAGCA 59.502 43.478 0.00 0.00 44.86 3.91
549 550 3.745975 TCCATACGCTGTATATGCAAAGC 59.254 43.478 0.00 0.00 0.00 3.51
550 551 5.063944 GGATCCATACGCTGTATATGCAAAG 59.936 44.000 6.95 0.00 0.00 2.77
551 552 4.935205 GGATCCATACGCTGTATATGCAAA 59.065 41.667 6.95 0.00 0.00 3.68
552 553 4.020662 TGGATCCATACGCTGTATATGCAA 60.021 41.667 11.44 0.00 0.00 4.08
553 554 3.513515 TGGATCCATACGCTGTATATGCA 59.486 43.478 11.44 0.00 0.00 3.96
554 555 4.123497 TGGATCCATACGCTGTATATGC 57.877 45.455 11.44 0.00 0.00 3.14
555 556 4.509230 GCATGGATCCATACGCTGTATATG 59.491 45.833 26.87 12.58 34.91 1.78
556 557 4.443457 GGCATGGATCCATACGCTGTATAT 60.443 45.833 26.87 0.00 34.91 0.86
557 558 3.118775 GGCATGGATCCATACGCTGTATA 60.119 47.826 26.87 0.00 34.91 1.47
558 559 2.355108 GGCATGGATCCATACGCTGTAT 60.355 50.000 26.87 0.00 34.91 2.29
559 560 1.001974 GGCATGGATCCATACGCTGTA 59.998 52.381 26.87 0.00 34.91 2.74
560 561 0.250467 GGCATGGATCCATACGCTGT 60.250 55.000 26.87 0.75 34.91 4.40
561 562 0.250424 TGGCATGGATCCATACGCTG 60.250 55.000 26.87 16.76 34.91 5.18
562 563 0.473755 TTGGCATGGATCCATACGCT 59.526 50.000 26.87 2.44 34.91 5.07
563 564 1.317613 TTTGGCATGGATCCATACGC 58.682 50.000 26.87 24.61 34.91 4.42
564 565 4.589216 ATTTTTGGCATGGATCCATACG 57.411 40.909 26.87 16.52 34.91 3.06
565 566 9.995003 TTATTTATTTTTGGCATGGATCCATAC 57.005 29.630 26.87 21.11 34.91 2.39
567 568 9.917887 TTTTATTTATTTTTGGCATGGATCCAT 57.082 25.926 22.15 22.15 37.08 3.41
568 569 9.917887 ATTTTATTTATTTTTGGCATGGATCCA 57.082 25.926 18.88 18.88 0.00 3.41
590 591 9.174166 ACAGAATCCATACGCTACTTTTATTTT 57.826 29.630 0.00 0.00 0.00 1.82
591 592 8.732746 ACAGAATCCATACGCTACTTTTATTT 57.267 30.769 0.00 0.00 0.00 1.40
592 593 8.612619 CAACAGAATCCATACGCTACTTTTATT 58.387 33.333 0.00 0.00 0.00 1.40
593 594 7.985184 TCAACAGAATCCATACGCTACTTTTAT 59.015 33.333 0.00 0.00 0.00 1.40
594 595 7.277098 GTCAACAGAATCCATACGCTACTTTTA 59.723 37.037 0.00 0.00 0.00 1.52
595 596 6.092259 GTCAACAGAATCCATACGCTACTTTT 59.908 38.462 0.00 0.00 0.00 2.27
596 597 5.581085 GTCAACAGAATCCATACGCTACTTT 59.419 40.000 0.00 0.00 0.00 2.66
597 598 5.105310 AGTCAACAGAATCCATACGCTACTT 60.105 40.000 0.00 0.00 0.00 2.24
598 599 4.402793 AGTCAACAGAATCCATACGCTACT 59.597 41.667 0.00 0.00 0.00 2.57
599 600 4.504461 CAGTCAACAGAATCCATACGCTAC 59.496 45.833 0.00 0.00 0.00 3.58
600 601 4.441495 CCAGTCAACAGAATCCATACGCTA 60.441 45.833 0.00 0.00 0.00 4.26
601 602 3.525537 CAGTCAACAGAATCCATACGCT 58.474 45.455 0.00 0.00 0.00 5.07
613 614 4.188462 TGTTATATTCGGCCAGTCAACAG 58.812 43.478 2.24 0.00 0.00 3.16
631 632 5.301805 TGATGACGCTAGGAGATTCATGTTA 59.698 40.000 0.00 0.00 0.00 2.41
638 639 2.608998 CGCATGATGACGCTAGGAGATT 60.609 50.000 0.00 0.00 0.00 2.40
641 642 0.665670 CCGCATGATGACGCTAGGAG 60.666 60.000 0.00 0.00 0.00 3.69
659 661 2.526304 TTACTGGATATGCGTCTGCC 57.474 50.000 0.00 0.00 41.78 4.85
673 675 2.586648 AGGGGAGCCAGTTTTTACTG 57.413 50.000 0.00 0.00 37.48 2.74
674 676 3.527937 TCTAGGGGAGCCAGTTTTTACT 58.472 45.455 0.00 0.00 0.00 2.24
675 677 3.994931 TCTAGGGGAGCCAGTTTTTAC 57.005 47.619 0.00 0.00 0.00 2.01
676 678 5.327737 TTTTCTAGGGGAGCCAGTTTTTA 57.672 39.130 0.00 0.00 0.00 1.52
677 679 3.895704 TTTCTAGGGGAGCCAGTTTTT 57.104 42.857 0.00 0.00 0.00 1.94
678 680 3.895704 TTTTCTAGGGGAGCCAGTTTT 57.104 42.857 0.00 0.00 0.00 2.43
679 681 3.309193 GGATTTTCTAGGGGAGCCAGTTT 60.309 47.826 0.00 0.00 0.00 2.66
694 696 4.775236 AGGCACATGTAGAGAGGATTTTC 58.225 43.478 0.00 0.00 0.00 2.29
715 729 0.435008 CGGAAACTCTCACGCGAAAG 59.565 55.000 15.93 9.89 0.00 2.62
740 754 4.784045 CGAGTAGCTAGCTTTTATCGATCG 59.216 45.833 24.88 9.36 0.00 3.69
775 789 2.124612 TCCGGCTCGATCGTACCA 60.125 61.111 22.67 7.32 0.00 3.25
781 795 1.517257 CTGTGTGTCCGGCTCGATC 60.517 63.158 0.00 0.00 0.00 3.69
782 796 2.214181 GACTGTGTGTCCGGCTCGAT 62.214 60.000 0.00 0.00 39.69 3.59
783 797 2.910479 ACTGTGTGTCCGGCTCGA 60.910 61.111 0.00 0.00 0.00 4.04
784 798 2.430921 GACTGTGTGTCCGGCTCG 60.431 66.667 0.00 0.00 39.69 5.03
785 799 2.430921 CGACTGTGTGTCCGGCTC 60.431 66.667 0.00 0.00 42.49 4.70
786 800 3.224324 ACGACTGTGTGTCCGGCT 61.224 61.111 0.00 0.00 42.49 5.52
787 801 3.036084 CACGACTGTGTGTCCGGC 61.036 66.667 0.00 0.00 42.49 6.13
788 802 2.355837 CCACGACTGTGTGTCCGG 60.356 66.667 0.00 0.00 44.92 5.14
789 803 0.031043 TAACCACGACTGTGTGTCCG 59.969 55.000 0.00 0.00 44.92 4.79
801 815 5.915758 TCGAAATTTGTTGGAATTAACCACG 59.084 36.000 0.00 0.00 39.85 4.94
824 838 2.072298 ACTCTTCGCAAGCTGACAATC 58.928 47.619 0.00 0.00 37.18 2.67
825 839 2.175878 ACTCTTCGCAAGCTGACAAT 57.824 45.000 0.00 0.00 37.18 2.71
834 848 2.151202 CCAGGCTAAAACTCTTCGCAA 58.849 47.619 0.00 0.00 0.00 4.85
837 851 1.734465 CAGCCAGGCTAAAACTCTTCG 59.266 52.381 15.64 0.00 36.40 3.79
844 858 5.481473 AGAAATGAAATCAGCCAGGCTAAAA 59.519 36.000 15.64 2.85 36.40 1.52
848 862 3.097342 AGAAATGAAATCAGCCAGGCT 57.903 42.857 8.70 8.70 40.77 4.58
850 864 5.544650 ACAAAAGAAATGAAATCAGCCAGG 58.455 37.500 0.00 0.00 0.00 4.45
933 947 5.344743 TTTGTAATGGGCAAGACAAACAA 57.655 34.783 1.71 0.00 36.99 2.83
964 978 1.051008 TTGCTGCTCAGACCTCAGAA 58.949 50.000 0.00 0.00 0.00 3.02
987 1001 1.231068 CCCCATTGCCACCTGCTAT 59.769 57.895 0.00 0.00 42.00 2.97
1094 4541 3.480133 GGATGTAGGGGCAGGCGT 61.480 66.667 0.00 0.00 0.00 5.68
1121 4568 1.705256 TGGAGTCGTCGTTTGTATGC 58.295 50.000 0.00 0.00 0.00 3.14
1172 4645 5.559608 CGTTAGCTGCAATTCATCGATCAAT 60.560 40.000 1.02 0.00 0.00 2.57
1411 4907 3.846405 AACCGTCAGGAGGCCCAGA 62.846 63.158 0.00 0.00 41.02 3.86
1579 5075 1.007734 GTGCTCGTCGAACTGGTCA 60.008 57.895 0.00 0.00 0.00 4.02
1903 5405 2.833582 TCGATGCCGGACTCCCTC 60.834 66.667 5.05 0.00 36.24 4.30
2634 6139 2.115266 ACCCTTGCTTTCCACCCG 59.885 61.111 0.00 0.00 0.00 5.28
2789 6294 0.621082 TCAATGGCATCCGGGTTGTA 59.379 50.000 0.00 0.00 0.00 2.41
2800 6305 1.634973 TCATCACCTCCTTCAATGGCA 59.365 47.619 0.00 0.00 0.00 4.92
2805 6310 2.912295 TGTGGATCATCACCTCCTTCAA 59.088 45.455 0.00 0.00 36.87 2.69
2829 6338 2.005451 GATCACTCACTGGTCATGTGC 58.995 52.381 0.00 0.00 35.58 4.57
2830 6339 2.094545 TCGATCACTCACTGGTCATGTG 60.095 50.000 0.00 0.00 36.82 3.21
2831 6340 2.094494 GTCGATCACTCACTGGTCATGT 60.094 50.000 0.00 0.00 29.18 3.21
2832 6341 2.534298 GTCGATCACTCACTGGTCATG 58.466 52.381 0.00 0.00 29.18 3.07
2833 6342 1.478510 GGTCGATCACTCACTGGTCAT 59.521 52.381 0.00 0.00 29.18 3.06
2834 6343 0.888619 GGTCGATCACTCACTGGTCA 59.111 55.000 0.00 0.00 29.18 4.02
2866 6386 4.437682 TTGTTCTGTCTCCTGGTTCAAT 57.562 40.909 0.00 0.00 0.00 2.57
2907 7634 2.478134 GCGGCTGTAGATGCTCTTAATG 59.522 50.000 0.00 0.00 0.00 1.90
2908 7635 2.103094 TGCGGCTGTAGATGCTCTTAAT 59.897 45.455 0.00 0.00 0.00 1.40
2909 7636 1.480545 TGCGGCTGTAGATGCTCTTAA 59.519 47.619 0.00 0.00 0.00 1.85
2910 7637 1.111277 TGCGGCTGTAGATGCTCTTA 58.889 50.000 0.00 0.00 0.00 2.10
2914 7641 0.036010 AACTTGCGGCTGTAGATGCT 60.036 50.000 0.00 0.00 0.00 3.79
2915 7642 1.327764 GTAACTTGCGGCTGTAGATGC 59.672 52.381 0.00 0.00 0.00 3.91
2916 7643 2.616960 TGTAACTTGCGGCTGTAGATG 58.383 47.619 0.00 0.00 0.00 2.90
2917 7644 3.328382 TTGTAACTTGCGGCTGTAGAT 57.672 42.857 0.00 0.00 0.00 1.98
2918 7645 2.823924 TTGTAACTTGCGGCTGTAGA 57.176 45.000 0.00 0.00 0.00 2.59
2919 7646 4.419522 AATTTGTAACTTGCGGCTGTAG 57.580 40.909 0.00 0.00 0.00 2.74
2920 7647 4.541779 CAAATTTGTAACTTGCGGCTGTA 58.458 39.130 10.15 0.00 0.00 2.74
2921 7648 3.380142 CAAATTTGTAACTTGCGGCTGT 58.620 40.909 10.15 0.00 0.00 4.40
2922 7649 2.730928 CCAAATTTGTAACTTGCGGCTG 59.269 45.455 16.73 0.00 0.00 4.85
2923 7650 2.288763 CCCAAATTTGTAACTTGCGGCT 60.289 45.455 16.73 0.00 0.00 5.52
2924 7651 2.065512 CCCAAATTTGTAACTTGCGGC 58.934 47.619 16.73 0.00 0.00 6.53
2930 7657 3.252554 TGAGGGCCCAAATTTGTAACT 57.747 42.857 27.56 9.08 0.00 2.24
2955 7682 1.455248 TAAATTTTGAGGCCCGTCCG 58.545 50.000 0.00 0.00 40.77 4.79
2957 7684 4.918810 ATGATAAATTTTGAGGCCCGTC 57.081 40.909 0.00 0.00 0.00 4.79
2958 7685 5.675684 AAATGATAAATTTTGAGGCCCGT 57.324 34.783 0.00 0.00 0.00 5.28
3001 7728 4.270084 GCGCTGCATGTAGTAGATGTTTTA 59.730 41.667 12.66 0.00 30.56 1.52
3006 7764 1.143305 GGCGCTGCATGTAGTAGATG 58.857 55.000 12.66 2.91 30.56 2.90
3012 7770 2.330393 GCATGGCGCTGCATGTAG 59.670 61.111 22.28 6.42 41.87 2.74
3034 7792 1.606480 CCAAGACGGATGGGATGATCG 60.606 57.143 0.00 0.00 36.56 3.69
3048 7806 2.435059 GCTCAGCCGACCCAAGAC 60.435 66.667 0.00 0.00 0.00 3.01
3051 7809 3.240134 GACAGCTCAGCCGACCCAA 62.240 63.158 0.00 0.00 0.00 4.12
3056 7814 0.179059 TGTTTTGACAGCTCAGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
3059 7817 1.268743 GGTGTGTTTTGACAGCTCAGC 60.269 52.381 0.00 0.00 40.48 4.26
3062 7820 1.295792 TCGGTGTGTTTTGACAGCTC 58.704 50.000 0.00 0.00 41.29 4.09
3063 7821 1.745232 TTCGGTGTGTTTTGACAGCT 58.255 45.000 0.00 0.00 41.29 4.24
3068 7826 4.109050 GAGCAATTTTCGGTGTGTTTTGA 58.891 39.130 0.00 0.00 0.00 2.69
3099 7857 6.541278 GGTGGGACTAATATAGGTGTGAAAAC 59.459 42.308 0.00 0.00 0.00 2.43
3104 7862 4.022242 CGAGGTGGGACTAATATAGGTGTG 60.022 50.000 0.00 0.00 0.00 3.82
3105 7863 4.150359 CGAGGTGGGACTAATATAGGTGT 58.850 47.826 0.00 0.00 0.00 4.16
3106 7864 3.056749 GCGAGGTGGGACTAATATAGGTG 60.057 52.174 0.00 0.00 0.00 4.00
3107 7865 3.163467 GCGAGGTGGGACTAATATAGGT 58.837 50.000 0.00 0.00 0.00 3.08
3108 7866 2.496470 GGCGAGGTGGGACTAATATAGG 59.504 54.545 0.00 0.00 0.00 2.57
3110 7868 2.165167 CGGCGAGGTGGGACTAATATA 58.835 52.381 0.00 0.00 0.00 0.86
3111 7869 0.966920 CGGCGAGGTGGGACTAATAT 59.033 55.000 0.00 0.00 0.00 1.28
3132 7890 9.388346 CATAGAAGATTCATACTAACTCGTCAC 57.612 37.037 0.00 0.00 0.00 3.67
3166 7924 9.095700 GGAGATAGACCCTGACTATAAATCTTT 57.904 37.037 0.00 0.00 31.76 2.52
3168 7926 8.006967 AGGAGATAGACCCTGACTATAAATCT 57.993 38.462 0.00 0.00 31.76 2.40
3169 7927 8.658840 AAGGAGATAGACCCTGACTATAAATC 57.341 38.462 0.00 0.00 31.76 2.17
3170 7928 8.235230 TGAAGGAGATAGACCCTGACTATAAAT 58.765 37.037 0.00 0.00 31.76 1.40
3171 7929 7.506261 GTGAAGGAGATAGACCCTGACTATAAA 59.494 40.741 0.00 0.00 31.76 1.40
3172 7930 7.005296 GTGAAGGAGATAGACCCTGACTATAA 58.995 42.308 0.00 0.00 31.76 0.98
3173 7931 6.102762 TGTGAAGGAGATAGACCCTGACTATA 59.897 42.308 0.00 0.00 31.76 1.31
3176 7934 3.011821 TGTGAAGGAGATAGACCCTGACT 59.988 47.826 0.00 0.00 32.12 3.41
3177 7935 3.366396 TGTGAAGGAGATAGACCCTGAC 58.634 50.000 0.00 0.00 32.12 3.51
3193 7955 6.493115 ACATACATGAATGTTTCCCTTGTGAA 59.507 34.615 0.00 0.00 41.97 3.18
3218 7980 9.979578 ACAAATTGTGATTCATAAAAAGCAGTA 57.020 25.926 0.00 0.00 0.00 2.74
3220 7982 8.980610 TGACAAATTGTGATTCATAAAAAGCAG 58.019 29.630 2.20 0.00 0.00 4.24
3268 8030 9.317827 TCCCTACTACAGTAACAGTAGATTTTT 57.682 33.333 11.43 0.00 44.64 1.94
3269 8031 8.890410 TCCCTACTACAGTAACAGTAGATTTT 57.110 34.615 11.43 0.00 44.64 1.82
3272 8034 9.962809 GATATCCCTACTACAGTAACAGTAGAT 57.037 37.037 11.43 1.60 44.64 1.98
3273 8035 8.942033 TGATATCCCTACTACAGTAACAGTAGA 58.058 37.037 11.43 0.00 44.64 2.59
3274 8036 9.570468 TTGATATCCCTACTACAGTAACAGTAG 57.430 37.037 0.00 4.22 42.53 2.57
3275 8037 9.347240 GTTGATATCCCTACTACAGTAACAGTA 57.653 37.037 0.00 0.00 0.00 2.74
3276 8038 7.013083 CGTTGATATCCCTACTACAGTAACAGT 59.987 40.741 0.00 0.00 0.00 3.55
3277 8039 7.013083 ACGTTGATATCCCTACTACAGTAACAG 59.987 40.741 0.00 0.00 0.00 3.16
3278 8040 6.830324 ACGTTGATATCCCTACTACAGTAACA 59.170 38.462 0.00 0.00 0.00 2.41
3279 8041 7.269477 ACGTTGATATCCCTACTACAGTAAC 57.731 40.000 0.00 0.00 0.00 2.50
3280 8042 7.992608 TGTACGTTGATATCCCTACTACAGTAA 59.007 37.037 0.00 0.00 0.00 2.24
3281 8043 7.508687 TGTACGTTGATATCCCTACTACAGTA 58.491 38.462 0.00 0.00 0.00 2.74
3282 8044 6.359804 TGTACGTTGATATCCCTACTACAGT 58.640 40.000 0.00 0.00 0.00 3.55
3283 8045 6.872628 TGTACGTTGATATCCCTACTACAG 57.127 41.667 0.00 0.00 0.00 2.74
3284 8046 6.999871 TCATGTACGTTGATATCCCTACTACA 59.000 38.462 0.00 7.16 0.00 2.74
3285 8047 7.444629 TCATGTACGTTGATATCCCTACTAC 57.555 40.000 0.00 2.72 0.00 2.73
3286 8048 8.520351 CATTCATGTACGTTGATATCCCTACTA 58.480 37.037 0.00 0.00 0.00 1.82
3287 8049 6.971726 TTCATGTACGTTGATATCCCTACT 57.028 37.500 0.00 0.00 0.00 2.57
3288 8050 7.375834 TCATTCATGTACGTTGATATCCCTAC 58.624 38.462 0.00 0.00 0.00 3.18
3292 8054 6.923508 TGTCTCATTCATGTACGTTGATATCC 59.076 38.462 0.00 0.00 0.00 2.59
3294 8056 8.604035 GTTTGTCTCATTCATGTACGTTGATAT 58.396 33.333 0.00 0.00 0.00 1.63
3311 8073 2.028876 TCGAGTGTCAGGTTTGTCTCA 58.971 47.619 0.00 0.00 0.00 3.27
3317 8079 1.135527 TGTTCGTCGAGTGTCAGGTTT 59.864 47.619 0.00 0.00 0.00 3.27
3321 8083 2.661594 TGATTGTTCGTCGAGTGTCAG 58.338 47.619 0.00 0.00 0.00 3.51
3324 8086 3.245797 CTGATGATTGTTCGTCGAGTGT 58.754 45.455 0.00 0.00 40.23 3.55
3327 8089 6.253512 TCATTAACTGATGATTGTTCGTCGAG 59.746 38.462 0.00 0.00 40.23 4.04
3329 8091 6.331170 TCATTAACTGATGATTGTTCGTCG 57.669 37.500 0.00 0.00 40.23 5.12
3330 8092 9.003112 CATTTCATTAACTGATGATTGTTCGTC 57.997 33.333 0.00 0.00 36.05 4.20
3331 8093 7.485913 GCATTTCATTAACTGATGATTGTTCGT 59.514 33.333 0.00 0.00 36.05 3.85
3332 8094 7.485595 TGCATTTCATTAACTGATGATTGTTCG 59.514 33.333 0.00 0.00 36.05 3.95
3333 8095 8.692110 TGCATTTCATTAACTGATGATTGTTC 57.308 30.769 0.00 0.00 36.05 3.18
3334 8096 8.308931 ACTGCATTTCATTAACTGATGATTGTT 58.691 29.630 0.00 0.00 36.05 2.83
3335 8097 7.833786 ACTGCATTTCATTAACTGATGATTGT 58.166 30.769 0.00 0.00 36.05 2.71
3336 8098 7.165318 CGACTGCATTTCATTAACTGATGATTG 59.835 37.037 0.00 0.00 36.05 2.67
3337 8099 7.066163 TCGACTGCATTTCATTAACTGATGATT 59.934 33.333 0.00 0.00 36.05 2.57
3338 8100 6.539826 TCGACTGCATTTCATTAACTGATGAT 59.460 34.615 0.00 0.00 36.05 2.45
3339 8101 5.874261 TCGACTGCATTTCATTAACTGATGA 59.126 36.000 0.00 0.00 34.37 2.92
3340 8102 6.110543 TCGACTGCATTTCATTAACTGATG 57.889 37.500 0.00 0.00 32.72 3.07
3341 8103 5.877012 ACTCGACTGCATTTCATTAACTGAT 59.123 36.000 0.00 0.00 32.72 2.90
3342 8104 5.120674 CACTCGACTGCATTTCATTAACTGA 59.879 40.000 0.00 0.00 0.00 3.41
3343 8105 5.106948 ACACTCGACTGCATTTCATTAACTG 60.107 40.000 0.00 0.00 0.00 3.16
3344 8106 4.997395 ACACTCGACTGCATTTCATTAACT 59.003 37.500 0.00 0.00 0.00 2.24
3345 8107 5.107104 TGACACTCGACTGCATTTCATTAAC 60.107 40.000 0.00 0.00 0.00 2.01
3371 8133 6.706055 TTCTTGTTGCGTAAGTCAGATAAG 57.294 37.500 0.00 0.00 41.68 1.73
3378 8140 7.174082 GTCTATCAATTCTTGTTGCGTAAGTC 58.826 38.462 0.00 0.00 41.68 3.01
3379 8141 6.092259 GGTCTATCAATTCTTGTTGCGTAAGT 59.908 38.462 0.00 0.00 41.68 2.24
3380 8142 6.313905 AGGTCTATCAATTCTTGTTGCGTAAG 59.686 38.462 0.00 0.00 43.44 2.34
3381 8143 6.170506 AGGTCTATCAATTCTTGTTGCGTAA 58.829 36.000 0.00 0.00 0.00 3.18
3382 8144 5.730550 AGGTCTATCAATTCTTGTTGCGTA 58.269 37.500 0.00 0.00 0.00 4.42
3388 8150 7.450074 TGTTGTGTAGGTCTATCAATTCTTGT 58.550 34.615 0.00 0.00 0.00 3.16
3390 8152 7.936847 TGTTGTTGTGTAGGTCTATCAATTCTT 59.063 33.333 0.00 0.00 0.00 2.52
3405 8167 3.181491 GGCAAGCTTCTTGTTGTTGTGTA 60.181 43.478 0.00 0.00 0.00 2.90
3466 8229 4.180946 CTCTGCCCGGACGAGACG 62.181 72.222 0.73 0.00 0.00 4.18
3468 8231 1.001764 TTACTCTGCCCGGACGAGA 60.002 57.895 17.69 8.70 0.00 4.04
3473 8236 5.680594 TTTTTATACTTACTCTGCCCGGA 57.319 39.130 0.73 0.00 0.00 5.14
3559 9603 9.809096 TTTATACTTACTCTGCTCAGATTTCTG 57.191 33.333 0.97 0.97 45.08 3.02
3636 9680 1.203441 TGGGGAGAAGCTGACTGCAT 61.203 55.000 12.92 0.00 45.94 3.96
3637 9681 1.842920 TGGGGAGAAGCTGACTGCA 60.843 57.895 12.92 0.00 45.94 4.41
3638 9682 1.376553 GTGGGGAGAAGCTGACTGC 60.377 63.158 4.54 4.54 43.29 4.40
3707 9751 1.851304 CCCACAGCCCAATTACATGT 58.149 50.000 2.69 2.69 0.00 3.21
3739 9783 1.180029 ATTGACAGTCATTGCTGGCC 58.820 50.000 3.45 0.00 43.67 5.36
3747 9791 0.706433 AGGGGGCAATTGACAGTCAT 59.294 50.000 14.60 0.00 0.00 3.06
3749 9793 0.038166 TGAGGGGGCAATTGACAGTC 59.962 55.000 14.60 6.72 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.