Multiple sequence alignment - TraesCS2D01G413700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G413700 chr2D 100.000 4279 0 0 1 4279 528085485 528081207 0.000000e+00 7902.0
1 TraesCS2D01G413700 chr2D 85.161 155 17 5 1582 1731 195292335 195292182 2.060000e-33 154.0
2 TraesCS2D01G413700 chr2A 90.041 3374 202 70 400 3700 672844080 672840768 0.000000e+00 4246.0
3 TraesCS2D01G413700 chr2A 89.979 479 35 4 3787 4257 672840766 672840293 1.320000e-169 606.0
4 TraesCS2D01G413700 chr2A 92.000 100 7 1 3696 3794 500032944 500032845 5.770000e-29 139.0
5 TraesCS2D01G413700 chr2A 80.916 131 19 4 1597 1723 669772581 669772709 9.790000e-17 99.0
6 TraesCS2D01G413700 chr2B 93.322 2306 108 26 1388 3668 625934101 625931817 0.000000e+00 3363.0
7 TraesCS2D01G413700 chr2B 85.294 986 61 30 440 1387 625935078 625934139 0.000000e+00 941.0
8 TraesCS2D01G413700 chr2B 84.953 319 15 16 3896 4186 625927863 625927550 4.190000e-75 292.0
9 TraesCS2D01G413700 chr2B 89.796 147 6 5 3772 3910 625931571 625931426 3.400000e-41 180.0
10 TraesCS2D01G413700 chr2B 89.773 88 2 4 4188 4275 625927488 625927408 5.850000e-19 106.0
11 TraesCS2D01G413700 chr1A 81.616 359 40 11 1 345 481927182 481926836 1.520000e-69 274.0
12 TraesCS2D01G413700 chr1A 84.138 145 19 3 1582 1722 21338278 21338134 2.080000e-28 137.0
13 TraesCS2D01G413700 chr3D 76.000 375 55 24 3 343 74318364 74318737 1.230000e-35 161.0
14 TraesCS2D01G413700 chr3D 93.069 101 6 1 3699 3799 22678511 22678610 3.450000e-31 147.0
15 TraesCS2D01G413700 chr3D 90.909 110 9 1 3699 3808 22768447 22768339 3.450000e-31 147.0
16 TraesCS2D01G413700 chr3D 81.250 144 23 2 115 255 433316212 433316354 3.500000e-21 113.0
17 TraesCS2D01G413700 chr7B 95.050 101 3 2 3694 3792 622831128 622831028 1.590000e-34 158.0
18 TraesCS2D01G413700 chr7A 96.809 94 2 1 3699 3791 80994166 80994073 5.730000e-34 156.0
19 TraesCS2D01G413700 chr7A 90.991 111 9 1 3686 3796 3013996 3014105 9.590000e-32 148.0
20 TraesCS2D01G413700 chr5D 93.269 104 7 0 3699 3802 383306973 383306870 2.060000e-33 154.0
21 TraesCS2D01G413700 chr6D 90.826 109 10 0 3687 3795 464673708 464673600 3.450000e-31 147.0
22 TraesCS2D01G413700 chr4D 92.308 104 6 2 3682 3785 476207221 476207120 3.450000e-31 147.0
23 TraesCS2D01G413700 chr5A 84.667 150 12 7 1582 1723 237461681 237461535 5.770000e-29 139.0
24 TraesCS2D01G413700 chr5A 88.732 71 8 0 1054 1124 699470236 699470166 2.120000e-13 87.9
25 TraesCS2D01G413700 chr3A 85.496 131 11 5 1599 1723 528529448 528529320 3.470000e-26 130.0
26 TraesCS2D01G413700 chr6B 82.313 147 18 5 1582 1723 314581123 314581266 2.090000e-23 121.0
27 TraesCS2D01G413700 chrUn 83.453 139 9 8 1599 1723 67784966 67785104 2.700000e-22 117.0
28 TraesCS2D01G413700 chr4B 87.342 79 10 0 1046 1124 660110024 660109946 1.640000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G413700 chr2D 528081207 528085485 4278 True 7902.0 7902 100.0000 1 4279 1 chr2D.!!$R2 4278
1 TraesCS2D01G413700 chr2A 672840293 672844080 3787 True 2426.0 4246 90.0100 400 4257 2 chr2A.!!$R2 3857
2 TraesCS2D01G413700 chr2B 625927408 625935078 7670 True 976.4 3363 88.6276 440 4275 5 chr2B.!!$R1 3835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 661 0.102120 GACAGCTCTCTCCATCACCG 59.898 60.0 0.00 0.00 0.00 4.94 F
1361 1403 0.105039 GGGGTGATGGACTGATCGTC 59.895 60.0 8.58 8.58 42.07 4.20 F
1519 1598 0.625849 CAGGGTAGGTGGCAAATCCT 59.374 55.0 0.45 0.45 37.80 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1585 0.400213 TGTCGAAGGATTTGCCACCT 59.600 50.000 0.00 0.0 40.02 4.00 R
2692 2783 1.936436 GCGGAGATGGCATTGCACAA 61.936 55.000 11.39 0.0 0.00 3.33 R
3496 3610 1.593750 GCCTGGCAGCATACGAGAG 60.594 63.158 15.17 0.0 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.894307 GAGGATCCGAACCGTTTTTG 57.106 50.000 5.98 0.00 0.00 2.44
31 32 2.419667 GAGGATCCGAACCGTTTTTGA 58.580 47.619 5.98 0.00 0.00 2.69
32 33 2.415512 GAGGATCCGAACCGTTTTTGAG 59.584 50.000 5.98 0.00 0.00 3.02
33 34 1.467342 GGATCCGAACCGTTTTTGAGG 59.533 52.381 0.00 0.00 0.00 3.86
34 35 2.419667 GATCCGAACCGTTTTTGAGGA 58.580 47.619 0.00 0.00 0.00 3.71
35 36 2.554370 TCCGAACCGTTTTTGAGGAT 57.446 45.000 0.00 0.00 0.00 3.24
36 37 2.419667 TCCGAACCGTTTTTGAGGATC 58.580 47.619 0.00 0.00 0.00 3.36
37 38 1.467342 CCGAACCGTTTTTGAGGATCC 59.533 52.381 2.48 2.48 0.00 3.36
38 39 2.423577 CGAACCGTTTTTGAGGATCCT 58.576 47.619 16.13 16.13 0.00 3.24
39 40 2.159627 CGAACCGTTTTTGAGGATCCTG 59.840 50.000 22.02 4.24 0.00 3.86
40 41 2.951229 ACCGTTTTTGAGGATCCTGT 57.049 45.000 22.02 4.99 0.00 4.00
41 42 4.320870 GAACCGTTTTTGAGGATCCTGTA 58.679 43.478 22.02 4.91 0.00 2.74
42 43 4.360951 ACCGTTTTTGAGGATCCTGTAA 57.639 40.909 22.02 11.54 0.00 2.41
43 44 4.721132 ACCGTTTTTGAGGATCCTGTAAA 58.279 39.130 22.02 16.99 0.00 2.01
44 45 5.134661 ACCGTTTTTGAGGATCCTGTAAAA 58.865 37.500 22.02 21.54 0.00 1.52
45 46 5.773176 ACCGTTTTTGAGGATCCTGTAAAAT 59.227 36.000 22.02 8.58 0.00 1.82
46 47 6.072119 ACCGTTTTTGAGGATCCTGTAAAATC 60.072 38.462 22.02 20.61 0.00 2.17
47 48 6.021596 CGTTTTTGAGGATCCTGTAAAATCG 58.978 40.000 28.07 28.07 32.47 3.34
48 49 6.322491 GTTTTTGAGGATCCTGTAAAATCGG 58.678 40.000 22.02 0.00 0.00 4.18
49 50 4.837093 TTGAGGATCCTGTAAAATCGGT 57.163 40.909 22.02 0.00 0.00 4.69
50 51 4.402056 TGAGGATCCTGTAAAATCGGTC 57.598 45.455 22.02 0.03 0.00 4.79
51 52 3.772572 TGAGGATCCTGTAAAATCGGTCA 59.227 43.478 22.02 3.13 0.00 4.02
52 53 4.224147 TGAGGATCCTGTAAAATCGGTCAA 59.776 41.667 22.02 0.00 0.00 3.18
53 54 5.104527 TGAGGATCCTGTAAAATCGGTCAAT 60.105 40.000 22.02 0.00 0.00 2.57
54 55 5.126067 AGGATCCTGTAAAATCGGTCAATG 58.874 41.667 15.29 0.00 0.00 2.82
55 56 4.261197 GGATCCTGTAAAATCGGTCAATGC 60.261 45.833 3.84 0.00 0.00 3.56
56 57 3.013921 TCCTGTAAAATCGGTCAATGCC 58.986 45.455 0.00 0.00 0.00 4.40
102 103 4.219999 GAGCAGGCGGAGGAGCTC 62.220 72.222 4.71 4.71 45.50 4.09
104 105 4.828925 GCAGGCGGAGGAGCTCAC 62.829 72.222 17.19 8.81 37.29 3.51
105 106 4.154347 CAGGCGGAGGAGCTCACC 62.154 72.222 17.19 16.58 37.29 4.02
133 134 4.207281 CGGAGCATCGCCGGAGAA 62.207 66.667 13.28 0.00 42.79 2.87
134 135 2.279784 GGAGCATCGCCGGAGAAG 60.280 66.667 13.28 9.38 34.37 2.85
135 136 2.279784 GAGCATCGCCGGAGAAGG 60.280 66.667 13.28 8.97 0.00 3.46
160 161 2.796651 CCAAAGCATCGGCAGAGC 59.203 61.111 0.00 0.00 44.61 4.09
161 162 2.042259 CCAAAGCATCGGCAGAGCA 61.042 57.895 9.92 0.00 44.61 4.26
162 163 1.428219 CAAAGCATCGGCAGAGCAG 59.572 57.895 9.92 0.00 44.61 4.24
163 164 1.748122 AAAGCATCGGCAGAGCAGG 60.748 57.895 9.92 0.00 44.61 4.85
164 165 4.853050 AGCATCGGCAGAGCAGGC 62.853 66.667 9.92 3.57 44.61 4.85
166 167 2.895865 CATCGGCAGAGCAGGCAG 60.896 66.667 0.00 0.00 0.00 4.85
167 168 4.853050 ATCGGCAGAGCAGGCAGC 62.853 66.667 0.00 0.00 46.19 5.25
201 202 4.699522 GTTCTGGCCGGCCGAAGT 62.700 66.667 36.57 0.00 39.42 3.01
202 203 3.948719 TTCTGGCCGGCCGAAGTT 61.949 61.111 39.00 0.00 39.42 2.66
203 204 3.894547 TTCTGGCCGGCCGAAGTTC 62.895 63.158 39.00 15.47 39.42 3.01
207 208 4.736896 GCCGGCCGAAGTTCGAGT 62.737 66.667 30.73 0.00 43.74 4.18
208 209 2.048503 CCGGCCGAAGTTCGAGTT 60.049 61.111 30.73 0.00 43.74 3.01
209 210 2.092882 CCGGCCGAAGTTCGAGTTC 61.093 63.158 30.73 11.62 43.74 3.01
211 212 1.372623 GGCCGAAGTTCGAGTTCGT 60.373 57.895 26.37 2.78 46.46 3.85
212 213 1.615107 GGCCGAAGTTCGAGTTCGTG 61.615 60.000 26.37 17.18 46.46 4.35
213 214 1.773496 CCGAAGTTCGAGTTCGTGC 59.227 57.895 26.37 0.00 46.46 5.34
214 215 0.937699 CCGAAGTTCGAGTTCGTGCA 60.938 55.000 26.37 0.00 46.46 4.57
215 216 1.060713 CGAAGTTCGAGTTCGTGCAT 58.939 50.000 20.58 0.00 43.80 3.96
216 217 1.201704 CGAAGTTCGAGTTCGTGCATG 60.202 52.381 20.58 0.00 43.80 4.06
217 218 1.792949 GAAGTTCGAGTTCGTGCATGT 59.207 47.619 5.68 0.00 40.80 3.21
218 219 1.139989 AGTTCGAGTTCGTGCATGTG 58.860 50.000 5.68 0.00 40.80 3.21
219 220 0.859232 GTTCGAGTTCGTGCATGTGT 59.141 50.000 5.68 0.00 40.80 3.72
220 221 0.858583 TTCGAGTTCGTGCATGTGTG 59.141 50.000 5.68 0.00 40.80 3.82
221 222 1.556591 TCGAGTTCGTGCATGTGTGC 61.557 55.000 5.68 0.00 44.18 4.57
229 230 3.490759 GCATGTGTGCGTCTCGGG 61.491 66.667 0.00 0.00 42.28 5.14
230 231 2.815211 CATGTGTGCGTCTCGGGG 60.815 66.667 0.00 0.00 0.00 5.73
231 232 2.994995 ATGTGTGCGTCTCGGGGA 60.995 61.111 0.00 0.00 0.00 4.81
232 233 2.579657 ATGTGTGCGTCTCGGGGAA 61.580 57.895 0.00 0.00 0.00 3.97
233 234 2.432628 GTGTGCGTCTCGGGGAAG 60.433 66.667 0.00 0.00 0.00 3.46
234 235 2.599281 TGTGCGTCTCGGGGAAGA 60.599 61.111 0.00 0.00 0.00 2.87
235 236 2.204461 TGTGCGTCTCGGGGAAGAA 61.204 57.895 0.00 0.00 0.00 2.52
236 237 1.446272 GTGCGTCTCGGGGAAGAAG 60.446 63.158 0.00 0.00 0.00 2.85
237 238 2.509561 GCGTCTCGGGGAAGAAGC 60.510 66.667 0.00 0.00 42.13 3.86
238 239 2.970639 CGTCTCGGGGAAGAAGCA 59.029 61.111 0.00 0.00 0.00 3.91
239 240 1.517832 CGTCTCGGGGAAGAAGCAT 59.482 57.895 0.00 0.00 0.00 3.79
240 241 0.807667 CGTCTCGGGGAAGAAGCATG 60.808 60.000 0.00 0.00 0.00 4.06
241 242 0.537188 GTCTCGGGGAAGAAGCATGA 59.463 55.000 0.00 0.00 0.00 3.07
242 243 0.826715 TCTCGGGGAAGAAGCATGAG 59.173 55.000 0.00 0.00 0.00 2.90
243 244 0.179062 CTCGGGGAAGAAGCATGAGG 60.179 60.000 0.00 0.00 0.00 3.86
244 245 0.617535 TCGGGGAAGAAGCATGAGGA 60.618 55.000 0.00 0.00 0.00 3.71
245 246 0.179062 CGGGGAAGAAGCATGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
246 247 0.182299 GGGGAAGAAGCATGAGGAGG 59.818 60.000 0.00 0.00 0.00 4.30
247 248 1.207791 GGGAAGAAGCATGAGGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
248 249 1.561542 GGGAAGAAGCATGAGGAGGAA 59.438 52.381 0.00 0.00 0.00 3.36
249 250 2.025887 GGGAAGAAGCATGAGGAGGAAA 60.026 50.000 0.00 0.00 0.00 3.13
250 251 3.562176 GGGAAGAAGCATGAGGAGGAAAA 60.562 47.826 0.00 0.00 0.00 2.29
251 252 4.082125 GGAAGAAGCATGAGGAGGAAAAA 58.918 43.478 0.00 0.00 0.00 1.94
279 280 9.551734 AACTTTTAAGATACAAGTTTACGGAGT 57.448 29.630 0.00 0.00 37.44 3.85
280 281 9.201127 ACTTTTAAGATACAAGTTTACGGAGTC 57.799 33.333 0.00 0.00 43.93 3.36
281 282 9.420551 CTTTTAAGATACAAGTTTACGGAGTCT 57.579 33.333 0.00 0.00 43.93 3.24
285 286 8.928270 AAGATACAAGTTTACGGAGTCTATTG 57.072 34.615 0.00 0.00 43.93 1.90
286 287 8.064336 AGATACAAGTTTACGGAGTCTATTGT 57.936 34.615 0.00 0.00 43.93 2.71
287 288 7.974501 AGATACAAGTTTACGGAGTCTATTGTG 59.025 37.037 0.00 0.00 43.93 3.33
288 289 5.850614 ACAAGTTTACGGAGTCTATTGTGT 58.149 37.500 0.00 0.00 43.93 3.72
289 290 5.924825 ACAAGTTTACGGAGTCTATTGTGTC 59.075 40.000 0.00 0.00 43.93 3.67
290 291 4.730657 AGTTTACGGAGTCTATTGTGTCG 58.269 43.478 0.00 0.00 43.93 4.35
291 292 3.770263 TTACGGAGTCTATTGTGTCGG 57.230 47.619 0.00 0.00 43.93 4.79
292 293 1.830279 ACGGAGTCTATTGTGTCGGA 58.170 50.000 0.00 0.00 29.74 4.55
293 294 2.376109 ACGGAGTCTATTGTGTCGGAT 58.624 47.619 0.00 0.00 29.74 4.18
294 295 2.099263 ACGGAGTCTATTGTGTCGGATG 59.901 50.000 0.00 0.00 29.74 3.51
295 296 2.474816 GGAGTCTATTGTGTCGGATGC 58.525 52.381 0.00 0.00 0.00 3.91
296 297 2.474816 GAGTCTATTGTGTCGGATGCC 58.525 52.381 0.00 0.00 0.00 4.40
297 298 2.101582 GAGTCTATTGTGTCGGATGCCT 59.898 50.000 0.00 0.00 0.00 4.75
298 299 2.101582 AGTCTATTGTGTCGGATGCCTC 59.898 50.000 0.00 0.00 0.00 4.70
299 300 1.067060 TCTATTGTGTCGGATGCCTCG 59.933 52.381 0.00 0.00 0.00 4.63
300 301 0.529773 TATTGTGTCGGATGCCTCGC 60.530 55.000 0.00 0.00 0.00 5.03
301 302 4.794439 TGTGTCGGATGCCTCGCG 62.794 66.667 0.00 0.00 0.00 5.87
304 305 3.896133 GTCGGATGCCTCGCGGTA 61.896 66.667 6.13 0.00 0.00 4.02
305 306 2.910479 TCGGATGCCTCGCGGTAT 60.910 61.111 6.13 0.00 38.44 2.73
311 312 2.831685 ATGCCTCGCGGTATCATAAA 57.168 45.000 6.13 0.00 28.39 1.40
312 313 2.831685 TGCCTCGCGGTATCATAAAT 57.168 45.000 6.13 0.00 0.00 1.40
313 314 3.120321 TGCCTCGCGGTATCATAAATT 57.880 42.857 6.13 0.00 0.00 1.82
314 315 3.472652 TGCCTCGCGGTATCATAAATTT 58.527 40.909 6.13 0.00 0.00 1.82
315 316 3.249799 TGCCTCGCGGTATCATAAATTTG 59.750 43.478 6.13 0.00 0.00 2.32
316 317 3.250040 GCCTCGCGGTATCATAAATTTGT 59.750 43.478 6.13 0.00 0.00 2.83
317 318 4.261031 GCCTCGCGGTATCATAAATTTGTT 60.261 41.667 6.13 0.00 0.00 2.83
318 319 5.732247 GCCTCGCGGTATCATAAATTTGTTT 60.732 40.000 6.13 0.00 0.00 2.83
319 320 6.262601 CCTCGCGGTATCATAAATTTGTTTT 58.737 36.000 6.13 0.00 0.00 2.43
320 321 7.411274 CCTCGCGGTATCATAAATTTGTTTTA 58.589 34.615 6.13 0.00 34.37 1.52
321 322 7.586300 CCTCGCGGTATCATAAATTTGTTTTAG 59.414 37.037 6.13 0.00 33.40 1.85
322 323 6.908284 TCGCGGTATCATAAATTTGTTTTAGC 59.092 34.615 6.13 0.00 33.40 3.09
323 324 6.689241 CGCGGTATCATAAATTTGTTTTAGCA 59.311 34.615 0.00 0.00 33.40 3.49
324 325 7.097047 CGCGGTATCATAAATTTGTTTTAGCAG 60.097 37.037 0.00 0.00 33.40 4.24
325 326 7.167468 GCGGTATCATAAATTTGTTTTAGCAGG 59.833 37.037 0.00 0.00 33.40 4.85
326 327 8.188139 CGGTATCATAAATTTGTTTTAGCAGGT 58.812 33.333 0.00 0.00 33.40 4.00
327 328 9.516314 GGTATCATAAATTTGTTTTAGCAGGTC 57.484 33.333 0.00 0.00 33.40 3.85
338 339 9.953565 TTTGTTTTAGCAGGTCTTATATACAGT 57.046 29.630 0.00 0.00 0.00 3.55
339 340 9.953565 TTGTTTTAGCAGGTCTTATATACAGTT 57.046 29.630 0.00 0.00 0.00 3.16
340 341 9.953565 TGTTTTAGCAGGTCTTATATACAGTTT 57.046 29.630 0.00 0.00 0.00 2.66
345 346 8.644318 AGCAGGTCTTATATACAGTTTTTACG 57.356 34.615 0.00 0.00 0.00 3.18
346 347 8.255905 AGCAGGTCTTATATACAGTTTTTACGT 58.744 33.333 0.00 0.00 0.00 3.57
347 348 8.876790 GCAGGTCTTATATACAGTTTTTACGTT 58.123 33.333 0.00 0.00 0.00 3.99
356 357 9.895138 ATATACAGTTTTTACGTTTATGGGAGT 57.105 29.630 0.00 0.00 0.00 3.85
357 358 6.549912 ACAGTTTTTACGTTTATGGGAGTC 57.450 37.500 0.00 0.00 0.00 3.36
358 359 6.293698 ACAGTTTTTACGTTTATGGGAGTCT 58.706 36.000 0.00 0.00 0.00 3.24
359 360 6.204108 ACAGTTTTTACGTTTATGGGAGTCTG 59.796 38.462 0.00 0.00 0.00 3.51
360 361 5.180680 AGTTTTTACGTTTATGGGAGTCTGC 59.819 40.000 0.00 0.00 0.00 4.26
361 362 4.546829 TTTACGTTTATGGGAGTCTGCT 57.453 40.909 0.00 0.00 0.00 4.24
362 363 5.664294 TTTACGTTTATGGGAGTCTGCTA 57.336 39.130 0.00 0.00 0.00 3.49
363 364 3.802948 ACGTTTATGGGAGTCTGCTAG 57.197 47.619 0.00 0.00 0.00 3.42
364 365 3.362706 ACGTTTATGGGAGTCTGCTAGA 58.637 45.455 0.00 0.00 0.00 2.43
365 366 3.381908 ACGTTTATGGGAGTCTGCTAGAG 59.618 47.826 0.00 0.00 0.00 2.43
366 367 3.632604 CGTTTATGGGAGTCTGCTAGAGA 59.367 47.826 0.00 0.00 0.00 3.10
367 368 4.279671 CGTTTATGGGAGTCTGCTAGAGAT 59.720 45.833 0.00 0.00 31.63 2.75
368 369 5.537188 GTTTATGGGAGTCTGCTAGAGATG 58.463 45.833 0.00 0.00 31.63 2.90
369 370 1.407936 TGGGAGTCTGCTAGAGATGC 58.592 55.000 0.00 0.00 31.63 3.91
370 371 1.063341 TGGGAGTCTGCTAGAGATGCT 60.063 52.381 0.00 0.00 31.63 3.79
371 372 1.613437 GGGAGTCTGCTAGAGATGCTC 59.387 57.143 0.00 0.00 31.63 4.26
372 373 1.613437 GGAGTCTGCTAGAGATGCTCC 59.387 57.143 0.00 3.94 37.01 4.70
373 374 1.613437 GAGTCTGCTAGAGATGCTCCC 59.387 57.143 0.00 0.00 31.63 4.30
374 375 1.063341 AGTCTGCTAGAGATGCTCCCA 60.063 52.381 0.00 0.00 31.63 4.37
375 376 1.068434 GTCTGCTAGAGATGCTCCCAC 59.932 57.143 0.00 0.00 31.63 4.61
376 377 1.063341 TCTGCTAGAGATGCTCCCACT 60.063 52.381 0.00 0.00 0.00 4.00
377 378 2.175715 TCTGCTAGAGATGCTCCCACTA 59.824 50.000 0.00 0.00 0.00 2.74
378 379 2.557924 CTGCTAGAGATGCTCCCACTAG 59.442 54.545 0.00 0.00 35.21 2.57
379 380 1.272212 GCTAGAGATGCTCCCACTAGC 59.728 57.143 0.00 0.00 45.31 3.42
380 381 1.892474 CTAGAGATGCTCCCACTAGCC 59.108 57.143 0.00 0.00 42.05 3.93
381 382 0.264359 AGAGATGCTCCCACTAGCCT 59.736 55.000 0.00 0.00 42.05 4.58
382 383 1.127343 GAGATGCTCCCACTAGCCTT 58.873 55.000 0.00 0.00 42.05 4.35
383 384 2.091055 AGAGATGCTCCCACTAGCCTTA 60.091 50.000 0.00 0.00 42.05 2.69
384 385 2.298729 GAGATGCTCCCACTAGCCTTAG 59.701 54.545 0.00 0.00 42.05 2.18
385 386 2.091055 AGATGCTCCCACTAGCCTTAGA 60.091 50.000 0.00 0.00 42.05 2.10
386 387 2.247699 TGCTCCCACTAGCCTTAGAA 57.752 50.000 0.00 0.00 42.05 2.10
387 388 2.546899 TGCTCCCACTAGCCTTAGAAA 58.453 47.619 0.00 0.00 42.05 2.52
388 389 2.501723 TGCTCCCACTAGCCTTAGAAAG 59.498 50.000 0.00 0.00 42.05 2.62
389 390 2.502130 GCTCCCACTAGCCTTAGAAAGT 59.498 50.000 0.00 0.00 36.45 2.66
390 391 3.680196 GCTCCCACTAGCCTTAGAAAGTG 60.680 52.174 0.00 0.00 39.22 3.16
391 392 2.236395 TCCCACTAGCCTTAGAAAGTGC 59.764 50.000 0.00 0.00 38.39 4.40
392 393 2.027192 CCCACTAGCCTTAGAAAGTGCA 60.027 50.000 0.00 0.00 38.39 4.57
393 394 3.370953 CCCACTAGCCTTAGAAAGTGCAT 60.371 47.826 0.00 0.00 38.39 3.96
394 395 3.873952 CCACTAGCCTTAGAAAGTGCATC 59.126 47.826 0.00 0.00 38.39 3.91
395 396 4.507710 CACTAGCCTTAGAAAGTGCATCA 58.492 43.478 0.00 0.00 33.59 3.07
396 397 5.121811 CACTAGCCTTAGAAAGTGCATCAT 58.878 41.667 0.00 0.00 33.59 2.45
397 398 6.283694 CACTAGCCTTAGAAAGTGCATCATA 58.716 40.000 0.00 0.00 33.59 2.15
398 399 6.423302 CACTAGCCTTAGAAAGTGCATCATAG 59.577 42.308 0.00 0.00 33.59 2.23
422 423 3.134127 GCACCATGGGAGAACGCC 61.134 66.667 18.09 0.00 0.00 5.68
426 427 2.202932 CATGGGAGAACGCCGGAG 60.203 66.667 5.05 3.72 0.00 4.63
523 527 1.988107 TCCCAGAAGAGTCAAAGCCAT 59.012 47.619 0.00 0.00 0.00 4.40
644 661 0.102120 GACAGCTCTCTCCATCACCG 59.898 60.000 0.00 0.00 0.00 4.94
665 682 1.377994 CAAGACTGCAGCTTCCCCT 59.622 57.895 15.27 0.00 0.00 4.79
683 700 1.144093 CCTACCCACAGAACAACCCAA 59.856 52.381 0.00 0.00 0.00 4.12
687 704 1.684869 CCCACAGAACAACCCAACTGT 60.685 52.381 0.00 0.00 43.05 3.55
708 725 2.347114 CATGACAGTGCGGACCCA 59.653 61.111 2.38 0.00 0.00 4.51
710 727 2.515979 ATGACAGTGCGGACCCACA 61.516 57.895 2.38 1.58 38.18 4.17
714 731 3.626924 AGTGCGGACCCACACTCC 61.627 66.667 2.38 0.00 43.55 3.85
717 734 2.351276 GCGGACCCACACTCCAAT 59.649 61.111 0.00 0.00 0.00 3.16
718 735 1.303317 GCGGACCCACACTCCAATT 60.303 57.895 0.00 0.00 0.00 2.32
720 737 1.586154 CGGACCCACACTCCAATTGC 61.586 60.000 0.00 0.00 0.00 3.56
728 745 1.269012 CACTCCAATTGCCCCACATT 58.731 50.000 0.00 0.00 0.00 2.71
732 749 1.004862 TCCAATTGCCCCACATTACGA 59.995 47.619 0.00 0.00 0.00 3.43
735 752 0.746563 ATTGCCCCACATTACGACCG 60.747 55.000 0.00 0.00 0.00 4.79
737 754 2.266372 CCCCACATTACGACCGCA 59.734 61.111 0.00 0.00 0.00 5.69
739 756 1.374885 CCCACATTACGACCGCACA 60.375 57.895 0.00 0.00 0.00 4.57
740 757 0.742990 CCCACATTACGACCGCACAT 60.743 55.000 0.00 0.00 0.00 3.21
741 758 0.650512 CCACATTACGACCGCACATC 59.349 55.000 0.00 0.00 0.00 3.06
744 761 0.301687 CATTACGACCGCACATCAGC 59.698 55.000 0.00 0.00 0.00 4.26
770 797 0.952010 AGCGCGTAACGGAACCATTT 60.952 50.000 8.43 0.00 43.93 2.32
771 798 0.110101 GCGCGTAACGGAACCATTTT 60.110 50.000 8.43 0.00 43.93 1.82
772 799 1.128321 GCGCGTAACGGAACCATTTTA 59.872 47.619 8.43 0.00 43.93 1.52
773 800 2.412585 GCGCGTAACGGAACCATTTTAA 60.413 45.455 8.43 0.00 43.93 1.52
774 801 3.728566 GCGCGTAACGGAACCATTTTAAT 60.729 43.478 8.43 0.00 43.93 1.40
775 802 4.405196 CGCGTAACGGAACCATTTTAATT 58.595 39.130 0.00 0.00 38.44 1.40
776 803 4.852650 CGCGTAACGGAACCATTTTAATTT 59.147 37.500 0.00 0.00 38.44 1.82
777 804 6.020372 CGCGTAACGGAACCATTTTAATTTA 58.980 36.000 0.00 0.00 38.44 1.40
778 805 6.522510 CGCGTAACGGAACCATTTTAATTTAA 59.477 34.615 0.00 0.00 38.44 1.52
801 828 4.295857 GGTTAAGACCATCGAGAGAGAC 57.704 50.000 0.00 0.00 45.77 3.36
802 829 3.695060 GGTTAAGACCATCGAGAGAGACA 59.305 47.826 0.00 0.00 45.77 3.41
803 830 4.201970 GGTTAAGACCATCGAGAGAGACAG 60.202 50.000 0.00 0.00 45.77 3.51
804 831 7.169863 GGTTAAGACCATCGAGAGAGACAGG 62.170 52.000 0.00 0.00 45.77 4.00
808 835 4.647825 TCGAGAGAGACAGGAGGC 57.352 61.111 0.00 0.00 34.84 4.70
810 837 1.747367 CGAGAGAGACAGGAGGCGT 60.747 63.158 0.00 0.00 0.00 5.68
814 841 0.680280 GAGAGACAGGAGGCGTGGTA 60.680 60.000 0.00 0.00 0.00 3.25
845 872 4.696402 CCTAGATAATCCTCGACGCTAACT 59.304 45.833 0.00 0.00 0.00 2.24
897 924 5.811399 AACCAAGCAAAATCGAATCGATA 57.189 34.783 19.04 0.00 46.30 2.92
908 936 4.049546 TCGAATCGATACGGACCAAATT 57.950 40.909 0.00 0.00 0.00 1.82
1206 1248 1.063174 GGGACGCTGTACTGTACGTAG 59.937 57.143 12.87 7.12 39.16 3.51
1207 1249 2.002586 GGACGCTGTACTGTACGTAGA 58.997 52.381 12.87 0.00 39.16 2.59
1232 1274 3.066760 GGTAGTTGCTTTGTTGAGCTTGT 59.933 43.478 0.00 0.00 43.11 3.16
1233 1275 4.274950 GGTAGTTGCTTTGTTGAGCTTGTA 59.725 41.667 0.00 0.00 43.11 2.41
1235 1277 5.323371 AGTTGCTTTGTTGAGCTTGTAAA 57.677 34.783 0.00 0.00 43.11 2.01
1247 1289 6.368779 TGAGCTTGTAAAGGGTTATACTGT 57.631 37.500 0.00 0.00 46.35 3.55
1252 1294 8.714906 AGCTTGTAAAGGGTTATACTGTGATAT 58.285 33.333 0.00 0.00 46.35 1.63
1264 1306 3.198068 ACTGTGATATTTGCTGCCGTAG 58.802 45.455 0.00 0.00 0.00 3.51
1311 1353 2.916934 AGGCAGGATAACAGGGTACAAA 59.083 45.455 0.00 0.00 0.00 2.83
1316 1358 5.186198 CAGGATAACAGGGTACAAAGGAAG 58.814 45.833 0.00 0.00 0.00 3.46
1320 1362 4.790718 AACAGGGTACAAAGGAAGAAGT 57.209 40.909 0.00 0.00 0.00 3.01
1361 1403 0.105039 GGGGTGATGGACTGATCGTC 59.895 60.000 8.58 8.58 42.07 4.20
1410 1489 7.561021 TGCAAAGTAGTTTTCAGTTGTATGA 57.439 32.000 0.00 0.00 0.00 2.15
1446 1525 6.591448 GGATGCAGGAGAAAACTAAAAATTGG 59.409 38.462 0.00 0.00 0.00 3.16
1455 1534 7.200455 AGAAAACTAAAAATTGGAGAACGGTG 58.800 34.615 0.00 0.00 0.00 4.94
1490 1569 8.824756 AACGATGTATGGGTGTATCTATATCT 57.175 34.615 0.00 0.00 0.00 1.98
1491 1570 9.916360 AACGATGTATGGGTGTATCTATATCTA 57.084 33.333 0.00 0.00 0.00 1.98
1519 1598 0.625849 CAGGGTAGGTGGCAAATCCT 59.374 55.000 0.45 0.45 37.80 3.24
1523 1602 1.065709 GGTAGGTGGCAAATCCTTCGA 60.066 52.381 0.00 0.00 35.51 3.71
1534 1613 4.261197 GCAAATCCTTCGACAGAGTTTGTT 60.261 41.667 16.14 0.00 41.05 2.83
1537 1616 3.202906 TCCTTCGACAGAGTTTGTTTGG 58.797 45.455 0.00 0.00 41.05 3.28
1560 1641 3.563808 TGTTGCAGTCATGTTCTTGTACC 59.436 43.478 0.00 0.00 0.00 3.34
1667 1752 4.215399 ACATAATTGCGCTTAAGTGTGTGT 59.785 37.500 17.00 8.94 30.69 3.72
1677 1762 5.797934 CGCTTAAGTGTGTGTTTCAGAAAAA 59.202 36.000 7.91 0.00 0.00 1.94
1766 1852 5.050644 TCATAACTGAATGTTTGCAGCTG 57.949 39.130 10.11 10.11 39.89 4.24
1769 1855 6.598850 TCATAACTGAATGTTTGCAGCTGATA 59.401 34.615 20.43 1.74 39.89 2.15
1784 1870 5.819901 GCAGCTGATAAAAATGGTAGAGTCT 59.180 40.000 20.43 0.00 0.00 3.24
1785 1871 6.018343 GCAGCTGATAAAAATGGTAGAGTCTC 60.018 42.308 20.43 0.00 0.00 3.36
1821 1907 3.845178 TGTTCATTGGTAGCAGTCTACG 58.155 45.455 0.00 0.00 44.74 3.51
1908 1995 5.106555 TGCTTTTATGTGTAGCAGCTTCTTC 60.107 40.000 0.00 0.00 39.79 2.87
1939 2030 5.244402 TCAGACATGCATTTTGTGGATTCTT 59.756 36.000 0.00 0.00 36.66 2.52
1957 2048 3.435275 TCTTCTGTGCTAGAGGTGTGAT 58.565 45.455 0.00 0.00 36.61 3.06
2066 2157 5.189928 GGGTTTTTGAGGTTGAACCAAAAT 58.810 37.500 17.83 0.00 41.95 1.82
2095 2186 4.156922 CCTGGCTATGTCTATAGAAGGTCG 59.843 50.000 3.40 0.00 38.88 4.79
2294 2385 4.097418 AGCAAGAGTGGGTCAGTATTACT 58.903 43.478 0.00 0.00 0.00 2.24
2354 2445 9.594478 ACGATACATGACTGATTGTATTTTGTA 57.406 29.630 0.00 0.00 38.74 2.41
2608 2699 5.921004 TCAAAATGTAAACAGCCATTTGC 57.079 34.783 0.00 0.00 41.71 3.68
2692 2783 6.749036 AATAATAAGAGGACATTCCGGTCT 57.251 37.500 0.00 0.00 42.75 3.85
2713 2804 1.678300 TGCAATGCCATCTCCGCAA 60.678 52.632 1.53 0.00 40.22 4.85
2765 2856 1.506028 TTCCGCCCTCCCATTTTCCT 61.506 55.000 0.00 0.00 0.00 3.36
2767 2858 1.037579 CCGCCCTCCCATTTTCCTTC 61.038 60.000 0.00 0.00 0.00 3.46
2787 2881 3.414486 AAAAACACTCCCCTGTCCG 57.586 52.632 0.00 0.00 0.00 4.79
2940 3042 7.824289 TCTTGATTTCCACTGATTTGGTACTAG 59.176 37.037 0.00 0.00 37.93 2.57
3052 3157 7.220741 AGCTAGATTTTCCTTTCAAACTTCC 57.779 36.000 0.00 0.00 0.00 3.46
3200 3309 4.237843 ACAGTGATATGGATGACCTGGAT 58.762 43.478 0.00 0.00 37.04 3.41
3269 3378 3.994392 TGTCACCAAAGCTATCGAAAGAC 59.006 43.478 0.00 0.00 46.97 3.01
3337 3447 0.883153 TCGTACTTCGCCAGCTTGTA 59.117 50.000 0.00 0.00 39.67 2.41
3401 3511 3.472652 TCCAACGAGTTTTGCTGTGTAT 58.527 40.909 0.00 0.00 0.00 2.29
3451 3565 6.268566 AGTGATTTTGCAACTCTTTGTCTTC 58.731 36.000 0.00 0.00 34.90 2.87
3489 3603 3.878778 AGTTGTTCAGGCATCAGTATCC 58.121 45.455 0.00 0.00 0.00 2.59
3495 3609 2.840038 TCAGGCATCAGTATCCTGTGTT 59.160 45.455 7.31 0.00 45.67 3.32
3496 3610 3.118629 TCAGGCATCAGTATCCTGTGTTC 60.119 47.826 7.31 0.00 45.67 3.18
3714 3944 7.902920 TTGTAATATACTCCCTCCGTAAACT 57.097 36.000 0.00 0.00 0.00 2.66
3715 3945 8.995027 TTGTAATATACTCCCTCCGTAAACTA 57.005 34.615 0.00 0.00 0.00 2.24
3716 3946 8.995027 TGTAATATACTCCCTCCGTAAACTAA 57.005 34.615 0.00 0.00 0.00 2.24
3717 3947 9.592196 TGTAATATACTCCCTCCGTAAACTAAT 57.408 33.333 0.00 0.00 0.00 1.73
3724 3954 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3725 3955 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3726 3956 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3728 3958 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3729 3959 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3730 3960 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3731 3961 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3747 3977 9.817809 AGAGCGTTTAGATCATTATTTTAGTGA 57.182 29.630 0.00 0.00 37.82 3.41
3816 4074 3.391382 GGGGTAGTCTGCCGTGCT 61.391 66.667 0.35 0.00 0.00 4.40
3934 7775 0.533032 GTGTGCTACTCCAGAGGGTC 59.467 60.000 0.00 0.00 34.93 4.46
3952 7793 8.511748 AGAGGGTCTGATGGTTATATATGTTT 57.488 34.615 0.00 0.00 0.00 2.83
3953 7794 8.949421 AGAGGGTCTGATGGTTATATATGTTTT 58.051 33.333 0.00 0.00 0.00 2.43
4006 7847 6.418101 ACAGCAATGTAGTGGAGAAATGTAT 58.582 36.000 0.00 0.00 0.00 2.29
4009 7850 6.317140 AGCAATGTAGTGGAGAAATGTATGTG 59.683 38.462 0.00 0.00 0.00 3.21
4067 7934 3.939592 GTGGATGTAAAGCCTGTTAGGAC 59.060 47.826 0.00 0.00 37.67 3.85
4075 7942 0.391263 GCCTGTTAGGACCTTCGTGG 60.391 60.000 0.00 0.00 37.67 4.94
4107 7976 8.745464 ATTTCGTGAAGTCTTTCTTACTACTC 57.255 34.615 0.00 0.00 36.40 2.59
4204 8133 2.093973 TCAGTTCGCTCCCTCTTCAATC 60.094 50.000 0.00 0.00 0.00 2.67
4205 8134 1.902508 AGTTCGCTCCCTCTTCAATCA 59.097 47.619 0.00 0.00 0.00 2.57
4206 8135 2.303022 AGTTCGCTCCCTCTTCAATCAA 59.697 45.455 0.00 0.00 0.00 2.57
4207 8136 3.054802 AGTTCGCTCCCTCTTCAATCAAT 60.055 43.478 0.00 0.00 0.00 2.57
4252 8186 9.848710 ATCTCAGAATGTCATCATGTTAATCTT 57.151 29.630 0.00 0.00 37.40 2.40
4253 8187 9.676861 TCTCAGAATGTCATCATGTTAATCTTT 57.323 29.630 0.00 0.00 37.40 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.605534 GGTTCGGATCCTCCATATATGATG 58.394 45.833 14.54 6.18 35.91 3.07
1 2 4.342378 CGGTTCGGATCCTCCATATATGAT 59.658 45.833 14.54 0.00 35.91 2.45
2 3 3.699538 CGGTTCGGATCCTCCATATATGA 59.300 47.826 14.54 0.00 35.91 2.15
3 4 3.447586 ACGGTTCGGATCCTCCATATATG 59.552 47.826 10.75 5.68 35.91 1.78
4 5 3.709587 ACGGTTCGGATCCTCCATATAT 58.290 45.455 10.75 0.00 35.91 0.86
5 6 3.165087 ACGGTTCGGATCCTCCATATA 57.835 47.619 10.75 0.00 35.91 0.86
6 7 2.011122 ACGGTTCGGATCCTCCATAT 57.989 50.000 10.75 0.00 35.91 1.78
7 8 1.784358 AACGGTTCGGATCCTCCATA 58.216 50.000 10.75 0.00 35.91 2.74
8 9 0.909623 AAACGGTTCGGATCCTCCAT 59.090 50.000 10.75 0.00 35.91 3.41
9 10 0.688487 AAAACGGTTCGGATCCTCCA 59.312 50.000 10.75 0.00 35.91 3.86
10 11 1.467342 CAAAAACGGTTCGGATCCTCC 59.533 52.381 10.75 8.64 0.00 4.30
11 12 2.415512 CTCAAAAACGGTTCGGATCCTC 59.584 50.000 10.75 0.00 0.00 3.71
12 13 2.423577 CTCAAAAACGGTTCGGATCCT 58.576 47.619 10.75 0.00 0.00 3.24
13 14 1.467342 CCTCAAAAACGGTTCGGATCC 59.533 52.381 0.00 0.00 0.00 3.36
14 15 2.419667 TCCTCAAAAACGGTTCGGATC 58.580 47.619 0.00 0.00 0.00 3.36
15 16 2.554370 TCCTCAAAAACGGTTCGGAT 57.446 45.000 0.00 0.00 0.00 4.18
16 17 2.419667 GATCCTCAAAAACGGTTCGGA 58.580 47.619 0.00 0.00 0.00 4.55
17 18 1.467342 GGATCCTCAAAAACGGTTCGG 59.533 52.381 3.84 0.00 0.00 4.30
18 19 2.159627 CAGGATCCTCAAAAACGGTTCG 59.840 50.000 12.69 0.00 0.00 3.95
19 20 3.146847 ACAGGATCCTCAAAAACGGTTC 58.853 45.455 12.69 0.00 0.00 3.62
20 21 3.223674 ACAGGATCCTCAAAAACGGTT 57.776 42.857 12.69 0.00 0.00 4.44
21 22 2.951229 ACAGGATCCTCAAAAACGGT 57.049 45.000 12.69 0.63 0.00 4.83
22 23 5.699097 TTTTACAGGATCCTCAAAAACGG 57.301 39.130 20.97 8.59 0.00 4.44
23 24 6.021596 CGATTTTACAGGATCCTCAAAAACG 58.978 40.000 27.85 27.85 32.62 3.60
24 25 6.072119 ACCGATTTTACAGGATCCTCAAAAAC 60.072 38.462 24.54 21.68 0.00 2.43
25 26 6.007703 ACCGATTTTACAGGATCCTCAAAAA 58.992 36.000 24.54 24.03 0.00 1.94
26 27 5.566469 ACCGATTTTACAGGATCCTCAAAA 58.434 37.500 23.61 23.61 0.00 2.44
27 28 5.174037 ACCGATTTTACAGGATCCTCAAA 57.826 39.130 12.69 12.39 0.00 2.69
28 29 4.224147 TGACCGATTTTACAGGATCCTCAA 59.776 41.667 12.69 6.24 0.00 3.02
29 30 3.772572 TGACCGATTTTACAGGATCCTCA 59.227 43.478 12.69 0.00 0.00 3.86
30 31 4.402056 TGACCGATTTTACAGGATCCTC 57.598 45.455 12.69 0.00 0.00 3.71
31 32 4.837093 TTGACCGATTTTACAGGATCCT 57.163 40.909 9.02 9.02 0.00 3.24
32 33 4.261197 GCATTGACCGATTTTACAGGATCC 60.261 45.833 2.48 2.48 0.00 3.36
33 34 4.261197 GGCATTGACCGATTTTACAGGATC 60.261 45.833 0.00 0.00 0.00 3.36
34 35 3.632145 GGCATTGACCGATTTTACAGGAT 59.368 43.478 0.00 0.00 0.00 3.24
35 36 3.013921 GGCATTGACCGATTTTACAGGA 58.986 45.455 0.00 0.00 0.00 3.86
36 37 3.420839 GGCATTGACCGATTTTACAGG 57.579 47.619 0.00 0.00 0.00 4.00
85 86 4.219999 GAGCTCCTCCGCCTGCTC 62.220 72.222 0.87 0.00 43.75 4.26
87 88 4.828925 GTGAGCTCCTCCGCCTGC 62.829 72.222 12.15 0.00 0.00 4.85
88 89 4.154347 GGTGAGCTCCTCCGCCTG 62.154 72.222 12.15 0.00 0.00 4.85
116 117 4.207281 TTCTCCGGCGATGCTCCG 62.207 66.667 9.30 0.00 46.05 4.63
117 118 2.279784 CTTCTCCGGCGATGCTCC 60.280 66.667 9.30 0.00 0.00 4.70
118 119 2.279784 CCTTCTCCGGCGATGCTC 60.280 66.667 9.30 0.00 0.00 4.26
119 120 4.537433 GCCTTCTCCGGCGATGCT 62.537 66.667 9.30 0.00 40.79 3.79
143 144 1.989966 CTGCTCTGCCGATGCTTTGG 61.990 60.000 1.28 1.28 38.71 3.28
144 145 1.428219 CTGCTCTGCCGATGCTTTG 59.572 57.895 0.00 0.00 38.71 2.77
145 146 1.748122 CCTGCTCTGCCGATGCTTT 60.748 57.895 0.00 0.00 38.71 3.51
146 147 2.124819 CCTGCTCTGCCGATGCTT 60.125 61.111 0.00 0.00 38.71 3.91
147 148 4.853050 GCCTGCTCTGCCGATGCT 62.853 66.667 0.00 0.00 38.71 3.79
149 150 2.895865 CTGCCTGCTCTGCCGATG 60.896 66.667 0.00 0.00 0.00 3.84
150 151 4.853050 GCTGCCTGCTCTGCCGAT 62.853 66.667 0.00 0.00 38.95 4.18
184 185 4.699522 ACTTCGGCCGGCCAGAAC 62.700 66.667 42.78 18.06 35.37 3.01
185 186 3.894547 GAACTTCGGCCGGCCAGAA 62.895 63.158 42.78 37.89 35.37 3.02
186 187 4.388499 GAACTTCGGCCGGCCAGA 62.388 66.667 42.78 34.95 35.37 3.86
190 191 4.736896 ACTCGAACTTCGGCCGGC 62.737 66.667 27.83 21.18 40.88 6.13
191 192 2.048503 AACTCGAACTTCGGCCGG 60.049 61.111 27.83 13.23 40.88 6.13
192 193 2.434134 CGAACTCGAACTTCGGCCG 61.434 63.158 22.12 22.12 40.88 6.13
193 194 1.372623 ACGAACTCGAACTTCGGCC 60.373 57.895 22.19 0.00 43.90 6.13
194 195 1.773496 CACGAACTCGAACTTCGGC 59.227 57.895 22.19 0.00 43.90 5.54
195 196 0.937699 TGCACGAACTCGAACTTCGG 60.938 55.000 22.19 14.76 43.90 4.30
196 197 1.060713 ATGCACGAACTCGAACTTCG 58.939 50.000 18.60 18.60 44.90 3.79
197 198 1.792949 ACATGCACGAACTCGAACTTC 59.207 47.619 6.05 0.00 43.02 3.01
198 199 1.526887 CACATGCACGAACTCGAACTT 59.473 47.619 6.05 0.00 43.02 2.66
199 200 1.139989 CACATGCACGAACTCGAACT 58.860 50.000 6.05 0.00 43.02 3.01
200 201 0.859232 ACACATGCACGAACTCGAAC 59.141 50.000 6.05 0.00 43.02 3.95
201 202 0.858583 CACACATGCACGAACTCGAA 59.141 50.000 6.05 0.00 43.02 3.71
202 203 2.516486 CACACATGCACGAACTCGA 58.484 52.632 6.05 0.00 43.02 4.04
213 214 2.779951 TTCCCCGAGACGCACACATG 62.780 60.000 0.00 0.00 0.00 3.21
214 215 2.507110 CTTCCCCGAGACGCACACAT 62.507 60.000 0.00 0.00 0.00 3.21
215 216 3.220999 CTTCCCCGAGACGCACACA 62.221 63.158 0.00 0.00 0.00 3.72
216 217 2.430382 TTCTTCCCCGAGACGCACAC 62.430 60.000 0.00 0.00 0.00 3.82
217 218 2.154798 CTTCTTCCCCGAGACGCACA 62.155 60.000 0.00 0.00 0.00 4.57
218 219 1.446272 CTTCTTCCCCGAGACGCAC 60.446 63.158 0.00 0.00 0.00 5.34
219 220 2.970639 CTTCTTCCCCGAGACGCA 59.029 61.111 0.00 0.00 0.00 5.24
220 221 2.509561 GCTTCTTCCCCGAGACGC 60.510 66.667 0.00 0.00 34.43 5.19
221 222 0.807667 CATGCTTCTTCCCCGAGACG 60.808 60.000 0.00 0.00 0.00 4.18
222 223 0.537188 TCATGCTTCTTCCCCGAGAC 59.463 55.000 0.00 0.00 0.00 3.36
223 224 0.826715 CTCATGCTTCTTCCCCGAGA 59.173 55.000 0.00 0.00 0.00 4.04
224 225 0.179062 CCTCATGCTTCTTCCCCGAG 60.179 60.000 0.00 0.00 0.00 4.63
225 226 0.617535 TCCTCATGCTTCTTCCCCGA 60.618 55.000 0.00 0.00 0.00 5.14
226 227 0.179062 CTCCTCATGCTTCTTCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
227 228 0.182299 CCTCCTCATGCTTCTTCCCC 59.818 60.000 0.00 0.00 0.00 4.81
228 229 1.207791 TCCTCCTCATGCTTCTTCCC 58.792 55.000 0.00 0.00 0.00 3.97
229 230 3.356529 TTTCCTCCTCATGCTTCTTCC 57.643 47.619 0.00 0.00 0.00 3.46
253 254 9.551734 ACTCCGTAAACTTGTATCTTAAAAGTT 57.448 29.630 0.00 0.00 44.01 2.66
254 255 9.201127 GACTCCGTAAACTTGTATCTTAAAAGT 57.799 33.333 0.00 0.00 35.70 2.66
255 256 9.420551 AGACTCCGTAAACTTGTATCTTAAAAG 57.579 33.333 0.00 0.00 0.00 2.27
260 261 8.529476 ACAATAGACTCCGTAAACTTGTATCTT 58.471 33.333 0.00 0.00 0.00 2.40
261 262 7.974501 CACAATAGACTCCGTAAACTTGTATCT 59.025 37.037 0.00 0.00 0.00 1.98
262 263 7.758528 ACACAATAGACTCCGTAAACTTGTATC 59.241 37.037 0.00 0.00 0.00 2.24
263 264 7.609056 ACACAATAGACTCCGTAAACTTGTAT 58.391 34.615 0.00 0.00 0.00 2.29
264 265 6.985117 ACACAATAGACTCCGTAAACTTGTA 58.015 36.000 0.00 0.00 0.00 2.41
265 266 5.850614 ACACAATAGACTCCGTAAACTTGT 58.149 37.500 0.00 0.00 0.00 3.16
266 267 5.060569 CGACACAATAGACTCCGTAAACTTG 59.939 44.000 0.00 0.00 0.00 3.16
267 268 5.159209 CGACACAATAGACTCCGTAAACTT 58.841 41.667 0.00 0.00 0.00 2.66
268 269 4.380233 CCGACACAATAGACTCCGTAAACT 60.380 45.833 0.00 0.00 0.00 2.66
269 270 3.855950 CCGACACAATAGACTCCGTAAAC 59.144 47.826 0.00 0.00 0.00 2.01
270 271 3.758023 TCCGACACAATAGACTCCGTAAA 59.242 43.478 0.00 0.00 0.00 2.01
271 272 3.346315 TCCGACACAATAGACTCCGTAA 58.654 45.455 0.00 0.00 0.00 3.18
272 273 2.989909 TCCGACACAATAGACTCCGTA 58.010 47.619 0.00 0.00 0.00 4.02
273 274 1.830279 TCCGACACAATAGACTCCGT 58.170 50.000 0.00 0.00 0.00 4.69
274 275 2.732366 CATCCGACACAATAGACTCCG 58.268 52.381 0.00 0.00 0.00 4.63
275 276 2.474816 GCATCCGACACAATAGACTCC 58.525 52.381 0.00 0.00 0.00 3.85
276 277 2.101582 AGGCATCCGACACAATAGACTC 59.898 50.000 0.00 0.00 0.00 3.36
277 278 2.101582 GAGGCATCCGACACAATAGACT 59.898 50.000 0.00 0.00 0.00 3.24
278 279 2.474816 GAGGCATCCGACACAATAGAC 58.525 52.381 0.00 0.00 0.00 2.59
279 280 1.067060 CGAGGCATCCGACACAATAGA 59.933 52.381 0.00 0.00 0.00 1.98
280 281 1.491670 CGAGGCATCCGACACAATAG 58.508 55.000 0.00 0.00 0.00 1.73
281 282 0.529773 GCGAGGCATCCGACACAATA 60.530 55.000 0.00 0.00 0.00 1.90
282 283 1.815421 GCGAGGCATCCGACACAAT 60.815 57.895 0.00 0.00 0.00 2.71
283 284 2.434185 GCGAGGCATCCGACACAA 60.434 61.111 0.00 0.00 0.00 3.33
284 285 4.794439 CGCGAGGCATCCGACACA 62.794 66.667 0.00 0.00 0.00 3.72
294 295 7.940748 TAAAACAAATTTATGATACCGCGAGGC 60.941 37.037 8.23 0.00 43.36 4.70
295 296 7.411274 TAAAACAAATTTATGATACCGCGAGG 58.589 34.615 8.23 2.61 44.38 4.63
296 297 7.111593 GCTAAAACAAATTTATGATACCGCGAG 59.888 37.037 8.23 0.00 33.15 5.03
297 298 6.908284 GCTAAAACAAATTTATGATACCGCGA 59.092 34.615 8.23 0.00 33.15 5.87
298 299 6.689241 TGCTAAAACAAATTTATGATACCGCG 59.311 34.615 0.00 0.00 33.15 6.46
299 300 7.167468 CCTGCTAAAACAAATTTATGATACCGC 59.833 37.037 0.00 0.00 33.15 5.68
300 301 8.188139 ACCTGCTAAAACAAATTTATGATACCG 58.812 33.333 0.00 0.00 33.15 4.02
301 302 9.516314 GACCTGCTAAAACAAATTTATGATACC 57.484 33.333 0.00 0.00 33.15 2.73
312 313 9.953565 ACTGTATATAAGACCTGCTAAAACAAA 57.046 29.630 0.00 0.00 0.00 2.83
313 314 9.953565 AACTGTATATAAGACCTGCTAAAACAA 57.046 29.630 0.00 0.00 0.00 2.83
314 315 9.953565 AAACTGTATATAAGACCTGCTAAAACA 57.046 29.630 0.00 0.00 0.00 2.83
319 320 9.740239 CGTAAAAACTGTATATAAGACCTGCTA 57.260 33.333 0.00 0.00 0.00 3.49
320 321 8.255905 ACGTAAAAACTGTATATAAGACCTGCT 58.744 33.333 0.00 0.00 0.00 4.24
321 322 8.416485 ACGTAAAAACTGTATATAAGACCTGC 57.584 34.615 0.00 0.00 0.00 4.85
330 331 9.895138 ACTCCCATAAACGTAAAAACTGTATAT 57.105 29.630 0.00 0.00 0.00 0.86
331 332 9.369904 GACTCCCATAAACGTAAAAACTGTATA 57.630 33.333 0.00 0.00 0.00 1.47
332 333 8.098912 AGACTCCCATAAACGTAAAAACTGTAT 58.901 33.333 0.00 0.00 0.00 2.29
333 334 7.385752 CAGACTCCCATAAACGTAAAAACTGTA 59.614 37.037 0.00 0.00 0.00 2.74
334 335 6.204108 CAGACTCCCATAAACGTAAAAACTGT 59.796 38.462 0.00 0.00 0.00 3.55
335 336 6.599437 CAGACTCCCATAAACGTAAAAACTG 58.401 40.000 0.00 0.00 0.00 3.16
336 337 5.180680 GCAGACTCCCATAAACGTAAAAACT 59.819 40.000 0.00 0.00 0.00 2.66
337 338 5.180680 AGCAGACTCCCATAAACGTAAAAAC 59.819 40.000 0.00 0.00 0.00 2.43
338 339 5.310451 AGCAGACTCCCATAAACGTAAAAA 58.690 37.500 0.00 0.00 0.00 1.94
339 340 4.901868 AGCAGACTCCCATAAACGTAAAA 58.098 39.130 0.00 0.00 0.00 1.52
340 341 4.546829 AGCAGACTCCCATAAACGTAAA 57.453 40.909 0.00 0.00 0.00 2.01
341 342 4.951715 TCTAGCAGACTCCCATAAACGTAA 59.048 41.667 0.00 0.00 0.00 3.18
342 343 4.529897 TCTAGCAGACTCCCATAAACGTA 58.470 43.478 0.00 0.00 0.00 3.57
343 344 3.362706 TCTAGCAGACTCCCATAAACGT 58.637 45.455 0.00 0.00 0.00 3.99
344 345 3.632604 TCTCTAGCAGACTCCCATAAACG 59.367 47.826 0.00 0.00 0.00 3.60
345 346 5.537188 CATCTCTAGCAGACTCCCATAAAC 58.463 45.833 0.00 0.00 32.26 2.01
346 347 4.039730 GCATCTCTAGCAGACTCCCATAAA 59.960 45.833 0.00 0.00 32.26 1.40
347 348 3.576118 GCATCTCTAGCAGACTCCCATAA 59.424 47.826 0.00 0.00 32.26 1.90
348 349 3.161067 GCATCTCTAGCAGACTCCCATA 58.839 50.000 0.00 0.00 32.26 2.74
349 350 1.969923 GCATCTCTAGCAGACTCCCAT 59.030 52.381 0.00 0.00 32.26 4.00
350 351 1.063341 AGCATCTCTAGCAGACTCCCA 60.063 52.381 0.00 0.00 32.26 4.37
351 352 1.613437 GAGCATCTCTAGCAGACTCCC 59.387 57.143 0.00 0.00 32.26 4.30
352 353 1.613437 GGAGCATCTCTAGCAGACTCC 59.387 57.143 10.40 10.40 37.29 3.85
353 354 1.613437 GGGAGCATCTCTAGCAGACTC 59.387 57.143 0.00 0.00 32.26 3.36
354 355 1.063341 TGGGAGCATCTCTAGCAGACT 60.063 52.381 0.00 0.00 35.73 3.24
355 356 1.068434 GTGGGAGCATCTCTAGCAGAC 59.932 57.143 0.00 0.00 35.73 3.51
356 357 1.063341 AGTGGGAGCATCTCTAGCAGA 60.063 52.381 0.00 0.00 35.73 4.26
357 358 1.412079 AGTGGGAGCATCTCTAGCAG 58.588 55.000 0.00 0.00 35.73 4.24
358 359 2.591923 CTAGTGGGAGCATCTCTAGCA 58.408 52.381 0.00 0.00 35.73 3.49
359 360 1.272212 GCTAGTGGGAGCATCTCTAGC 59.728 57.143 14.50 14.50 43.15 3.42
360 361 1.892474 GGCTAGTGGGAGCATCTCTAG 59.108 57.143 0.00 0.00 44.76 2.43
361 362 1.501170 AGGCTAGTGGGAGCATCTCTA 59.499 52.381 0.00 0.00 44.76 2.43
362 363 0.264359 AGGCTAGTGGGAGCATCTCT 59.736 55.000 0.00 0.00 44.76 3.10
363 364 1.127343 AAGGCTAGTGGGAGCATCTC 58.873 55.000 0.00 0.00 44.76 2.75
364 365 2.091055 TCTAAGGCTAGTGGGAGCATCT 60.091 50.000 0.00 0.00 44.76 2.90
365 366 2.320781 TCTAAGGCTAGTGGGAGCATC 58.679 52.381 0.00 0.00 44.76 3.91
366 367 2.478872 TCTAAGGCTAGTGGGAGCAT 57.521 50.000 0.00 0.00 44.76 3.79
367 368 2.247699 TTCTAAGGCTAGTGGGAGCA 57.752 50.000 0.00 0.00 44.76 4.26
368 369 2.502130 ACTTTCTAAGGCTAGTGGGAGC 59.498 50.000 0.00 0.00 42.05 4.70
369 370 3.680196 GCACTTTCTAAGGCTAGTGGGAG 60.680 52.174 14.41 0.50 38.68 4.30
370 371 2.236395 GCACTTTCTAAGGCTAGTGGGA 59.764 50.000 14.41 0.00 38.68 4.37
371 372 2.027192 TGCACTTTCTAAGGCTAGTGGG 60.027 50.000 14.41 0.00 38.68 4.61
372 373 3.334583 TGCACTTTCTAAGGCTAGTGG 57.665 47.619 14.41 0.00 38.68 4.00
373 374 4.507710 TGATGCACTTTCTAAGGCTAGTG 58.492 43.478 9.50 9.50 40.65 2.74
374 375 4.826274 TGATGCACTTTCTAAGGCTAGT 57.174 40.909 0.00 0.00 0.00 2.57
375 376 6.520272 ACTATGATGCACTTTCTAAGGCTAG 58.480 40.000 0.00 0.00 0.00 3.42
376 377 6.485830 ACTATGATGCACTTTCTAAGGCTA 57.514 37.500 0.00 0.00 0.00 3.93
377 378 5.365021 ACTATGATGCACTTTCTAAGGCT 57.635 39.130 0.00 0.00 0.00 4.58
378 379 5.220931 CCAACTATGATGCACTTTCTAAGGC 60.221 44.000 0.00 0.00 0.00 4.35
379 380 6.115446 TCCAACTATGATGCACTTTCTAAGG 58.885 40.000 0.00 0.00 0.00 2.69
380 381 7.637229 CATCCAACTATGATGCACTTTCTAAG 58.363 38.462 0.00 0.00 33.81 2.18
381 382 7.558161 CATCCAACTATGATGCACTTTCTAA 57.442 36.000 0.00 0.00 33.81 2.10
412 413 3.066233 GAGTCTCCGGCGTTCTCCC 62.066 68.421 6.01 0.00 0.00 4.30
422 423 1.658686 CCTCGGACTTGGAGTCTCCG 61.659 65.000 14.34 11.33 44.46 4.63
426 427 0.898789 TCCACCTCGGACTTGGAGTC 60.899 60.000 0.00 0.00 44.32 3.36
438 439 4.285851 CGAAGCTGGTTCCACCTC 57.714 61.111 13.43 0.00 39.58 3.85
460 461 1.289109 CCGACACCGTTACCAGCAAG 61.289 60.000 0.00 0.00 0.00 4.01
523 527 1.990060 CCAGCGGGAAGAGGAAGGA 60.990 63.158 0.00 0.00 35.59 3.36
655 672 0.909610 TCTGTGGGTAGGGGAAGCTG 60.910 60.000 0.00 0.00 0.00 4.24
665 682 1.847737 AGTTGGGTTGTTCTGTGGGTA 59.152 47.619 0.00 0.00 0.00 3.69
687 704 0.464036 GGTCCGCACTGTCATGGATA 59.536 55.000 0.00 0.00 32.18 2.59
708 725 0.114954 ATGTGGGGCAATTGGAGTGT 59.885 50.000 7.72 0.00 0.00 3.55
710 727 2.456577 GTAATGTGGGGCAATTGGAGT 58.543 47.619 7.72 0.00 0.00 3.85
712 729 1.004862 TCGTAATGTGGGGCAATTGGA 59.995 47.619 7.72 0.00 0.00 3.53
714 731 1.134175 GGTCGTAATGTGGGGCAATTG 59.866 52.381 0.00 0.00 0.00 2.32
717 734 1.376166 CGGTCGTAATGTGGGGCAA 60.376 57.895 0.00 0.00 0.00 4.52
718 735 2.266372 CGGTCGTAATGTGGGGCA 59.734 61.111 0.00 0.00 0.00 5.36
720 737 2.104253 GTGCGGTCGTAATGTGGGG 61.104 63.158 0.00 0.00 0.00 4.96
735 752 2.084681 GCTGCAAACGCTGATGTGC 61.085 57.895 0.00 0.00 37.51 4.57
737 754 2.557805 CGCTGCAAACGCTGATGT 59.442 55.556 0.00 0.00 0.00 3.06
744 761 2.858879 CGTTACGCGCTGCAAACG 60.859 61.111 5.73 14.30 39.68 3.60
745 762 2.432841 TTCCGTTACGCGCTGCAAAC 62.433 55.000 5.73 6.88 39.71 2.93
747 764 2.662196 TTCCGTTACGCGCTGCAA 60.662 55.556 5.73 0.00 39.71 4.08
799 826 0.455005 GTACTACCACGCCTCCTGTC 59.545 60.000 0.00 0.00 0.00 3.51
800 827 0.039326 AGTACTACCACGCCTCCTGT 59.961 55.000 0.00 0.00 0.00 4.00
801 828 0.739561 GAGTACTACCACGCCTCCTG 59.260 60.000 0.00 0.00 0.00 3.86
802 829 0.624785 AGAGTACTACCACGCCTCCT 59.375 55.000 0.00 0.00 0.00 3.69
803 830 1.023502 GAGAGTACTACCACGCCTCC 58.976 60.000 0.00 0.00 0.00 4.30
804 831 1.023502 GGAGAGTACTACCACGCCTC 58.976 60.000 12.09 5.57 0.00 4.70
808 835 6.594937 GGATTATCTAGGAGAGTACTACCACG 59.405 46.154 17.29 9.68 0.00 4.94
810 837 7.310547 CGAGGATTATCTAGGAGAGTACTACCA 60.311 44.444 17.29 6.15 0.00 3.25
814 841 6.572898 CGTCGAGGATTATCTAGGAGAGTACT 60.573 46.154 0.00 0.00 0.00 2.73
845 872 1.688187 GAGGGGAGGGGAAAGCGTA 60.688 63.158 0.00 0.00 0.00 4.42
896 923 0.108041 GGAGCCGAATTTGGTCCGTA 60.108 55.000 13.49 0.00 40.25 4.02
897 924 1.376812 GGAGCCGAATTTGGTCCGT 60.377 57.895 13.49 0.00 40.25 4.69
1206 1248 4.022849 AGCTCAACAAAGCAACTACCAATC 60.023 41.667 0.00 0.00 45.00 2.67
1207 1249 3.891366 AGCTCAACAAAGCAACTACCAAT 59.109 39.130 0.00 0.00 45.00 3.16
1232 1274 9.337396 CAGCAAATATCACAGTATAACCCTTTA 57.663 33.333 0.00 0.00 0.00 1.85
1233 1275 7.201821 GCAGCAAATATCACAGTATAACCCTTT 60.202 37.037 0.00 0.00 0.00 3.11
1235 1277 5.765182 GCAGCAAATATCACAGTATAACCCT 59.235 40.000 0.00 0.00 0.00 4.34
1247 1289 2.801699 CGACCTACGGCAGCAAATATCA 60.802 50.000 0.00 0.00 38.46 2.15
1264 1306 0.320697 AAGCAGTAACCTCCACGACC 59.679 55.000 0.00 0.00 0.00 4.79
1311 1353 1.222567 ACCACCCACAACTTCTTCCT 58.777 50.000 0.00 0.00 0.00 3.36
1316 1358 3.202829 TCTGTAACCACCCACAACTTC 57.797 47.619 0.00 0.00 0.00 3.01
1320 1362 4.141287 CTCAAATCTGTAACCACCCACAA 58.859 43.478 0.00 0.00 0.00 3.33
1361 1403 4.248859 ACTGGTCATCAGAAATTCAGACG 58.751 43.478 0.00 0.00 46.18 4.18
1410 1489 4.820775 TCTCCTGCATCCTATAACTTCCT 58.179 43.478 0.00 0.00 0.00 3.36
1446 1525 5.104374 TCGTTATAATTCACCACCGTTCTC 58.896 41.667 0.00 0.00 0.00 2.87
1455 1534 6.708949 ACACCCATACATCGTTATAATTCACC 59.291 38.462 0.00 0.00 0.00 4.02
1487 1566 5.072329 CCACCTACCCTGTCAATCAATAGAT 59.928 44.000 0.00 0.00 35.53 1.98
1488 1567 4.408921 CCACCTACCCTGTCAATCAATAGA 59.591 45.833 0.00 0.00 0.00 1.98
1489 1568 4.708177 CCACCTACCCTGTCAATCAATAG 58.292 47.826 0.00 0.00 0.00 1.73
1490 1569 3.118038 GCCACCTACCCTGTCAATCAATA 60.118 47.826 0.00 0.00 0.00 1.90
1491 1570 2.357154 GCCACCTACCCTGTCAATCAAT 60.357 50.000 0.00 0.00 0.00 2.57
1492 1571 1.004277 GCCACCTACCCTGTCAATCAA 59.996 52.381 0.00 0.00 0.00 2.57
1506 1585 0.400213 TGTCGAAGGATTTGCCACCT 59.600 50.000 0.00 0.00 40.02 4.00
1519 1598 3.340034 ACACCAAACAAACTCTGTCGAA 58.660 40.909 0.00 0.00 37.23 3.71
1523 1602 2.560542 TGCAACACCAAACAAACTCTGT 59.439 40.909 0.00 0.00 41.27 3.41
1534 1613 2.653726 AGAACATGACTGCAACACCAA 58.346 42.857 0.00 0.00 0.00 3.67
1537 1616 3.698029 ACAAGAACATGACTGCAACAC 57.302 42.857 0.00 0.00 0.00 3.32
1560 1641 5.885230 TGCTCAATATCCAACTGTTCTTG 57.115 39.130 0.00 0.00 0.00 3.02
1644 1726 4.215399 ACACACACTTAAGCGCAATTATGT 59.785 37.500 11.47 5.39 0.00 2.29
1769 1855 9.965902 ATTTATGACTGAGACTCTACCATTTTT 57.034 29.630 3.68 0.00 0.00 1.94
1821 1907 5.246307 ACTAGCAACCTCAGTCCATAAAAC 58.754 41.667 0.00 0.00 0.00 2.43
1915 2006 4.768448 AGAATCCACAAAATGCATGTCTGA 59.232 37.500 0.00 0.00 0.00 3.27
1939 2030 3.093057 AGATCACACCTCTAGCACAGA 57.907 47.619 0.00 0.00 0.00 3.41
2066 2157 1.578897 TAGACATAGCCAGGGCAACA 58.421 50.000 13.63 0.00 44.88 3.33
2095 2186 3.709653 TCTCAGTTGTACCCATCCATACC 59.290 47.826 0.00 0.00 0.00 2.73
2354 2445 9.626045 CGATTGAAAAAGTAGCCTAAGAATTTT 57.374 29.630 0.00 0.00 0.00 1.82
2366 2457 4.571176 GGTAGGAGGCGATTGAAAAAGTAG 59.429 45.833 0.00 0.00 0.00 2.57
2509 2600 4.984161 ACAACTGCATGCAATTTACTCAAC 59.016 37.500 22.88 0.00 0.00 3.18
2608 2699 8.996988 AAACATACAACAAACAGTATAACACG 57.003 30.769 0.00 0.00 30.23 4.49
2692 2783 1.936436 GCGGAGATGGCATTGCACAA 61.936 55.000 11.39 0.00 0.00 3.33
2713 2804 6.581712 ACAACACAAAGCCAAACAGATTTAT 58.418 32.000 0.00 0.00 0.00 1.40
2787 2881 8.045176 ACTATGAAGAATAAAGCTCACCAAAC 57.955 34.615 0.00 0.00 0.00 2.93
2838 2932 3.555956 GCACGACTCTTTCTCTTTTCACA 59.444 43.478 0.00 0.00 0.00 3.58
2851 2945 2.101582 ACAAGAGAAACAGCACGACTCT 59.898 45.455 0.00 0.00 39.21 3.24
2924 3026 8.443937 GCTTAAAAGACTAGTACCAAATCAGTG 58.556 37.037 0.00 0.00 0.00 3.66
2940 3042 6.417930 GTGAAATGTGAAGTGGCTTAAAAGAC 59.582 38.462 0.00 0.00 33.51 3.01
3005 3110 6.149474 GCTATTAGAACAAGTGACACACCATT 59.851 38.462 8.59 0.00 34.49 3.16
3007 3112 4.994852 GCTATTAGAACAAGTGACACACCA 59.005 41.667 8.59 0.00 34.49 4.17
3045 3150 9.583765 GAGAGTAATTAGTCAATACGGAAGTTT 57.416 33.333 19.98 0.00 46.40 2.66
3269 3378 7.417612 CAAATGGTAGGATAATTCAAACGAGG 58.582 38.462 0.00 0.00 0.00 4.63
3401 3511 7.801104 TCTTTACCAGACAATTCCTATATGCA 58.199 34.615 0.00 0.00 0.00 3.96
3451 3565 3.251729 ACAACTATGCAACAACTGAGCAG 59.748 43.478 0.00 0.00 42.14 4.24
3489 3603 1.923204 GCAGCATACGAGAGAACACAG 59.077 52.381 0.00 0.00 0.00 3.66
3495 3609 2.021068 GCCTGGCAGCATACGAGAGA 62.021 60.000 15.17 0.00 0.00 3.10
3496 3610 1.593750 GCCTGGCAGCATACGAGAG 60.594 63.158 15.17 0.00 0.00 3.20
3529 3643 1.033746 ACCATTGCAGCGAAGGATGG 61.034 55.000 11.11 9.32 42.28 3.51
3700 3930 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3703 3933 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3704 3934 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3705 3935 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3721 3951 9.817809 TCACTAAAATAATGATCTAAACGCTCT 57.182 29.630 0.00 0.00 0.00 4.09
3752 3982 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
3753 3983 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
3754 3984 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
3755 3985 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
3766 3996 8.657712 ACAAAAATAGTACTCCCTCTGTAAACT 58.342 33.333 0.00 0.00 0.00 2.66
3767 3997 8.843885 ACAAAAATAGTACTCCCTCTGTAAAC 57.156 34.615 0.00 0.00 0.00 2.01
3770 4000 9.856162 AAAAACAAAAATAGTACTCCCTCTGTA 57.144 29.630 0.00 0.00 0.00 2.74
3804 4062 2.471255 GCAATAAGCACGGCAGACT 58.529 52.632 0.00 0.00 44.79 3.24
3816 4074 2.095466 GCAGTTACAACGCCAGCAATAA 60.095 45.455 0.00 0.00 0.00 1.40
3961 7802 2.804986 TGCACCTAATGATTCCAGCA 57.195 45.000 0.00 0.00 0.00 4.41
3990 7831 5.178797 ACTGCACATACATTTCTCCACTAC 58.821 41.667 0.00 0.00 0.00 2.73
3991 7832 5.420725 ACTGCACATACATTTCTCCACTA 57.579 39.130 0.00 0.00 0.00 2.74
4009 7850 1.589727 GCCAAGTGTGTGCAACTGC 60.590 57.895 0.00 0.00 38.04 4.40
4075 7942 6.509677 AAGAAAGACTTCACGAAATTGTCGAC 60.510 38.462 9.11 9.11 42.99 4.20
4107 7976 5.499047 GGAACAATTATTAAGTCCGCTTCG 58.501 41.667 0.00 0.00 36.22 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.