Multiple sequence alignment - TraesCS2D01G413200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G413200 chr2D 100.000 2626 0 0 1 2626 527685326 527682701 0.000000e+00 4850.0
1 TraesCS2D01G413200 chr2D 88.851 1740 123 29 1 1696 527649215 527647503 0.000000e+00 2073.0
2 TraesCS2D01G413200 chr2D 84.211 969 91 33 801 1730 527804801 527803856 0.000000e+00 885.0
3 TraesCS2D01G413200 chr2D 84.552 848 89 32 802 1636 528994484 528995302 0.000000e+00 802.0
4 TraesCS2D01G413200 chr2D 84.211 741 96 18 40 770 614386188 614385459 0.000000e+00 701.0
5 TraesCS2D01G413200 chr2D 95.681 301 10 3 1774 2073 586794489 586794191 5.080000e-132 481.0
6 TraesCS2D01G413200 chr2D 95.904 293 11 1 1782 2073 24923476 24923184 8.510000e-130 473.0
7 TraesCS2D01G413200 chr2D 90.000 340 33 1 34 372 174419110 174418771 3.100000e-119 438.0
8 TraesCS2D01G413200 chr2D 93.284 268 13 3 502 768 527729784 527729521 8.810000e-105 390.0
9 TraesCS2D01G413200 chr2D 92.164 268 17 2 502 768 527677256 527676992 2.470000e-100 375.0
10 TraesCS2D01G413200 chr2D 93.033 244 16 1 2072 2315 527803765 527803523 3.210000e-94 355.0
11 TraesCS2D01G413200 chr2D 88.596 114 12 1 809 921 528998355 528998468 1.270000e-28 137.0
12 TraesCS2D01G413200 chr2D 88.496 113 10 2 2325 2436 527782768 527782658 1.640000e-27 134.0
13 TraesCS2D01G413200 chr2B 90.763 931 69 5 780 1696 625009316 625008389 0.000000e+00 1227.0
14 TraesCS2D01G413200 chr2B 86.575 1013 80 33 798 1775 627317490 627318481 0.000000e+00 1066.0
15 TraesCS2D01G413200 chr2B 85.984 1006 91 30 801 1775 625239181 625238195 0.000000e+00 1031.0
16 TraesCS2D01G413200 chr2B 91.444 561 30 11 2072 2626 625238193 625237645 0.000000e+00 754.0
17 TraesCS2D01G413200 chr2B 86.986 584 41 22 809 1383 628156867 628157424 2.220000e-175 625.0
18 TraesCS2D01G413200 chr2B 95.652 115 5 0 2072 2186 627318483 627318597 4.460000e-43 185.0
19 TraesCS2D01G413200 chr2A 90.646 727 64 2 1 726 672663503 672662780 0.000000e+00 963.0
20 TraesCS2D01G413200 chr2A 84.292 974 100 29 780 1730 672645394 672644451 0.000000e+00 902.0
21 TraesCS2D01G413200 chr2A 84.921 882 96 29 806 1674 673419735 673420592 0.000000e+00 857.0
22 TraesCS2D01G413200 chr2A 83.680 913 102 27 801 1679 673417553 673418452 0.000000e+00 817.0
23 TraesCS2D01G413200 chr2A 83.243 919 107 28 803 1687 672746501 672745596 0.000000e+00 800.0
24 TraesCS2D01G413200 chr2A 83.817 482 37 18 2148 2626 672745420 672744977 1.120000e-113 420.0
25 TraesCS2D01G413200 chr7D 83.356 733 100 19 46 768 30248266 30247546 0.000000e+00 658.0
26 TraesCS2D01G413200 chr7D 95.318 299 13 1 1776 2073 400893267 400893565 8.510000e-130 473.0
27 TraesCS2D01G413200 chr7D 90.909 55 2 2 447 499 87685454 87685401 1.300000e-08 71.3
28 TraesCS2D01G413200 chr1D 83.108 740 102 20 40 768 346185911 346185184 0.000000e+00 652.0
29 TraesCS2D01G413200 chr1D 82.321 741 94 24 40 768 408875888 408875173 2.230000e-170 608.0
30 TraesCS2D01G413200 chr1D 87.988 333 40 0 40 372 1829245 1828913 6.810000e-106 394.0
31 TraesCS2D01G413200 chr7B 82.557 751 90 30 40 769 679491071 679491801 7.980000e-175 623.0
32 TraesCS2D01G413200 chr5A 80.896 759 101 36 34 768 651718458 651717720 2.280000e-155 558.0
33 TraesCS2D01G413200 chr5A 79.630 270 32 18 512 768 706077164 706077423 3.470000e-39 172.0
34 TraesCS2D01G413200 chr5A 85.417 144 17 3 626 768 651733468 651733328 2.110000e-31 147.0
35 TraesCS2D01G413200 chr3B 80.805 745 109 26 40 768 93620202 93620928 1.060000e-153 553.0
36 TraesCS2D01G413200 chr3D 96.678 301 8 2 1774 2072 14314096 14313796 1.400000e-137 499.0
37 TraesCS2D01G413200 chr3D 95.349 301 13 1 1774 2073 384148149 384148449 6.580000e-131 477.0
38 TraesCS2D01G413200 chr3D 95.017 301 14 1 1774 2073 565409932 565409632 3.060000e-129 472.0
39 TraesCS2D01G413200 chr3D 86.136 339 34 11 304 633 45394053 45393719 1.160000e-93 353.0
40 TraesCS2D01G413200 chr3D 78.929 280 35 19 502 769 590437456 590437723 4.490000e-38 169.0
41 TraesCS2D01G413200 chr6D 95.904 293 11 1 1782 2073 40836186 40836478 8.510000e-130 473.0
42 TraesCS2D01G413200 chr6D 89.655 116 11 1 514 628 15982566 15982681 2.110000e-31 147.0
43 TraesCS2D01G413200 chr5D 95.017 301 13 2 1774 2073 40923617 40923916 3.060000e-129 472.0
44 TraesCS2D01G413200 chr5D 94.444 306 15 2 1769 2073 62095535 62095839 1.100000e-128 470.0
45 TraesCS2D01G413200 chr6B 87.744 359 43 1 6 363 688824291 688824649 4.040000e-113 418.0
46 TraesCS2D01G413200 chr6B 88.525 122 14 0 361 482 688837044 688837165 5.860000e-32 148.0
47 TraesCS2D01G413200 chr5B 88.194 144 13 3 626 768 416547825 416547965 4.490000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G413200 chr2D 527682701 527685326 2625 True 4850.0 4850 100.0000 1 2626 1 chr2D.!!$R5 2625
1 TraesCS2D01G413200 chr2D 527647503 527649215 1712 True 2073.0 2073 88.8510 1 1696 1 chr2D.!!$R3 1695
2 TraesCS2D01G413200 chr2D 614385459 614386188 729 True 701.0 701 84.2110 40 770 1 chr2D.!!$R9 730
3 TraesCS2D01G413200 chr2D 527803523 527804801 1278 True 620.0 885 88.6220 801 2315 2 chr2D.!!$R10 1514
4 TraesCS2D01G413200 chr2D 528994484 528998468 3984 False 469.5 802 86.5740 802 1636 2 chr2D.!!$F1 834
5 TraesCS2D01G413200 chr2B 625008389 625009316 927 True 1227.0 1227 90.7630 780 1696 1 chr2B.!!$R1 916
6 TraesCS2D01G413200 chr2B 625237645 625239181 1536 True 892.5 1031 88.7140 801 2626 2 chr2B.!!$R2 1825
7 TraesCS2D01G413200 chr2B 627317490 627318597 1107 False 625.5 1066 91.1135 798 2186 2 chr2B.!!$F2 1388
8 TraesCS2D01G413200 chr2B 628156867 628157424 557 False 625.0 625 86.9860 809 1383 1 chr2B.!!$F1 574
9 TraesCS2D01G413200 chr2A 672662780 672663503 723 True 963.0 963 90.6460 1 726 1 chr2A.!!$R2 725
10 TraesCS2D01G413200 chr2A 672644451 672645394 943 True 902.0 902 84.2920 780 1730 1 chr2A.!!$R1 950
11 TraesCS2D01G413200 chr2A 673417553 673420592 3039 False 837.0 857 84.3005 801 1679 2 chr2A.!!$F1 878
12 TraesCS2D01G413200 chr2A 672744977 672746501 1524 True 610.0 800 83.5300 803 2626 2 chr2A.!!$R3 1823
13 TraesCS2D01G413200 chr7D 30247546 30248266 720 True 658.0 658 83.3560 46 768 1 chr7D.!!$R1 722
14 TraesCS2D01G413200 chr1D 346185184 346185911 727 True 652.0 652 83.1080 40 768 1 chr1D.!!$R2 728
15 TraesCS2D01G413200 chr1D 408875173 408875888 715 True 608.0 608 82.3210 40 768 1 chr1D.!!$R3 728
16 TraesCS2D01G413200 chr7B 679491071 679491801 730 False 623.0 623 82.5570 40 769 1 chr7B.!!$F1 729
17 TraesCS2D01G413200 chr5A 651717720 651718458 738 True 558.0 558 80.8960 34 768 1 chr5A.!!$R1 734
18 TraesCS2D01G413200 chr3B 93620202 93620928 726 False 553.0 553 80.8050 40 768 1 chr3B.!!$F1 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 990 0.60813 GCACTTCCCACCCAAAATCC 59.392 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 4240 0.031111 ACTCCCATTCCCCATCTCGA 60.031 55.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.406595 CTTGATCCCGACCCCTGCC 62.407 68.421 0.00 0.00 0.00 4.85
147 148 3.640257 TACTCGGTCCTGGCGCTCT 62.640 63.158 7.64 0.00 0.00 4.09
302 303 1.079127 CCGTTCCTGTTCAGGCGAT 60.079 57.895 13.44 0.00 0.00 4.58
421 423 0.954452 CGAAGGCAAAAGCAAGGTCT 59.046 50.000 0.00 0.00 0.00 3.85
453 456 3.823304 GCCATTGTTCTCACCTTTCTTCT 59.177 43.478 0.00 0.00 0.00 2.85
476 483 4.873010 TCTTGGCCTATTCTCTCTGTACT 58.127 43.478 3.32 0.00 0.00 2.73
545 556 7.692460 AGTGAATGAGTGCTTTCATTGATAA 57.308 32.000 17.23 2.68 45.30 1.75
607 623 1.065358 CCGATTACAGTGTTCGCGTT 58.935 50.000 5.77 0.00 0.00 4.84
651 667 3.751175 GGTTTGGAAAGACACGATGATGA 59.249 43.478 0.00 0.00 0.00 2.92
652 668 4.378459 GGTTTGGAAAGACACGATGATGAC 60.378 45.833 0.00 0.00 0.00 3.06
653 669 3.961480 TGGAAAGACACGATGATGACT 57.039 42.857 0.00 0.00 0.00 3.41
654 670 3.588955 TGGAAAGACACGATGATGACTG 58.411 45.455 0.00 0.00 0.00 3.51
793 809 2.389962 TACGAATAAAGCAACCGCCT 57.610 45.000 0.00 0.00 39.83 5.52
807 823 0.757188 CCGCCTAGACCTCACATCCT 60.757 60.000 0.00 0.00 0.00 3.24
906 922 3.515286 TCTCGCGGATCGACCCAC 61.515 66.667 6.13 0.00 43.16 4.61
907 923 3.822192 CTCGCGGATCGACCCACA 61.822 66.667 6.13 0.00 43.16 4.17
958 987 1.573108 TTTGCACTTCCCACCCAAAA 58.427 45.000 0.00 0.00 0.00 2.44
959 988 1.799933 TTGCACTTCCCACCCAAAAT 58.200 45.000 0.00 0.00 0.00 1.82
961 990 0.608130 GCACTTCCCACCCAAAATCC 59.392 55.000 0.00 0.00 0.00 3.01
962 991 1.827245 GCACTTCCCACCCAAAATCCT 60.827 52.381 0.00 0.00 0.00 3.24
987 1020 1.632965 ATAAACCCCCTCGCCCTCAC 61.633 60.000 0.00 0.00 0.00 3.51
993 1026 3.083349 CCTCGCCCTCACATCCCA 61.083 66.667 0.00 0.00 0.00 4.37
996 1029 0.745845 CTCGCCCTCACATCCCAAAG 60.746 60.000 0.00 0.00 0.00 2.77
1039 1082 1.609208 GCCAAAGCAGTTCCTCTTCA 58.391 50.000 0.00 0.00 39.53 3.02
1050 1093 5.363939 CAGTTCCTCTTCATCCTAATCACC 58.636 45.833 0.00 0.00 0.00 4.02
1261 1362 4.340950 GTCCTCAAGATCTTCCTCGAGAAT 59.659 45.833 15.71 1.47 32.82 2.40
1277 1378 3.657448 AATGTCATCCGCGACGCCA 62.657 57.895 15.34 5.40 38.84 5.69
1370 1471 2.978824 GCACCCTCTACGGCTTCA 59.021 61.111 0.00 0.00 0.00 3.02
1406 1530 3.862124 CGGAGCAACTTCCTCGTG 58.138 61.111 0.00 0.00 34.96 4.35
1427 1553 3.195396 TGTGCTCTGTGTGATATGTGCTA 59.805 43.478 0.00 0.00 0.00 3.49
1451 1578 5.579047 TGGTGGATGGATTTACTGATTTGT 58.421 37.500 0.00 0.00 0.00 2.83
1452 1579 6.015918 TGGTGGATGGATTTACTGATTTGTT 58.984 36.000 0.00 0.00 0.00 2.83
1537 3848 5.105635 TGCAATCAGTTTGATTCTGAATCCC 60.106 40.000 23.62 13.51 43.03 3.85
1775 4215 4.192317 GGATCGTTGCAATACTTCCTCTT 58.808 43.478 0.59 0.00 0.00 2.85
1776 4216 5.357257 GGATCGTTGCAATACTTCCTCTTA 58.643 41.667 0.59 0.00 0.00 2.10
1777 4217 5.234543 GGATCGTTGCAATACTTCCTCTTAC 59.765 44.000 0.59 0.00 0.00 2.34
1778 4218 5.142061 TCGTTGCAATACTTCCTCTTACA 57.858 39.130 0.59 0.00 0.00 2.41
1779 4219 5.543714 TCGTTGCAATACTTCCTCTTACAA 58.456 37.500 0.59 0.00 0.00 2.41
1780 4220 6.170506 TCGTTGCAATACTTCCTCTTACAAT 58.829 36.000 0.59 0.00 0.00 2.71
1781 4221 6.092122 TCGTTGCAATACTTCCTCTTACAATG 59.908 38.462 0.59 0.00 0.00 2.82
1782 4222 6.128282 CGTTGCAATACTTCCTCTTACAATGT 60.128 38.462 0.59 0.00 0.00 2.71
1783 4223 6.741992 TGCAATACTTCCTCTTACAATGTG 57.258 37.500 0.00 0.00 0.00 3.21
1784 4224 6.237901 TGCAATACTTCCTCTTACAATGTGT 58.762 36.000 0.00 0.00 0.00 3.72
1785 4225 6.714810 TGCAATACTTCCTCTTACAATGTGTT 59.285 34.615 0.00 0.00 0.00 3.32
1786 4226 7.230510 TGCAATACTTCCTCTTACAATGTGTTT 59.769 33.333 0.00 0.00 0.00 2.83
1787 4227 7.538678 GCAATACTTCCTCTTACAATGTGTTTG 59.461 37.037 0.00 0.00 41.36 2.93
1788 4228 7.687941 ATACTTCCTCTTACAATGTGTTTGG 57.312 36.000 0.00 0.00 39.80 3.28
1789 4229 5.445964 ACTTCCTCTTACAATGTGTTTGGT 58.554 37.500 0.00 0.00 39.80 3.67
1790 4230 5.891551 ACTTCCTCTTACAATGTGTTTGGTT 59.108 36.000 0.00 0.00 39.80 3.67
1791 4231 6.039382 ACTTCCTCTTACAATGTGTTTGGTTC 59.961 38.462 0.00 0.00 39.80 3.62
1792 4232 4.513692 TCCTCTTACAATGTGTTTGGTTCG 59.486 41.667 0.00 0.00 39.80 3.95
1793 4233 4.320202 CCTCTTACAATGTGTTTGGTTCGG 60.320 45.833 0.00 0.00 39.80 4.30
1794 4234 3.566322 TCTTACAATGTGTTTGGTTCGGG 59.434 43.478 0.00 0.00 39.80 5.14
1795 4235 1.036707 ACAATGTGTTTGGTTCGGGG 58.963 50.000 0.00 0.00 39.80 5.73
1796 4236 0.316841 CAATGTGTTTGGTTCGGGGG 59.683 55.000 0.00 0.00 0.00 5.40
1797 4237 0.186386 AATGTGTTTGGTTCGGGGGA 59.814 50.000 0.00 0.00 0.00 4.81
1798 4238 0.186386 ATGTGTTTGGTTCGGGGGAA 59.814 50.000 0.00 0.00 0.00 3.97
1799 4239 0.186386 TGTGTTTGGTTCGGGGGAAT 59.814 50.000 0.00 0.00 0.00 3.01
1800 4240 1.334160 GTGTTTGGTTCGGGGGAATT 58.666 50.000 0.00 0.00 0.00 2.17
1801 4241 1.271379 GTGTTTGGTTCGGGGGAATTC 59.729 52.381 0.00 0.00 0.00 2.17
1802 4242 0.524414 GTTTGGTTCGGGGGAATTCG 59.476 55.000 0.00 0.00 0.00 3.34
1803 4243 0.400975 TTTGGTTCGGGGGAATTCGA 59.599 50.000 0.00 0.00 0.00 3.71
1804 4244 0.035820 TTGGTTCGGGGGAATTCGAG 60.036 55.000 0.00 0.00 36.72 4.04
1805 4245 0.905809 TGGTTCGGGGGAATTCGAGA 60.906 55.000 0.00 0.00 36.72 4.04
1806 4246 0.468648 GGTTCGGGGGAATTCGAGAT 59.531 55.000 0.00 0.00 36.72 2.75
1807 4247 1.583054 GTTCGGGGGAATTCGAGATG 58.417 55.000 0.00 0.00 36.72 2.90
1808 4248 0.468226 TTCGGGGGAATTCGAGATGG 59.532 55.000 0.00 0.00 36.72 3.51
1809 4249 1.071471 CGGGGGAATTCGAGATGGG 59.929 63.158 0.00 0.00 0.00 4.00
1810 4250 1.456287 GGGGGAATTCGAGATGGGG 59.544 63.158 0.00 0.00 0.00 4.96
1811 4251 1.060163 GGGGGAATTCGAGATGGGGA 61.060 60.000 0.00 0.00 0.00 4.81
1812 4252 0.843984 GGGGAATTCGAGATGGGGAA 59.156 55.000 0.00 0.00 0.00 3.97
1813 4253 1.425448 GGGGAATTCGAGATGGGGAAT 59.575 52.381 0.00 0.00 34.48 3.01
1814 4254 2.508526 GGGAATTCGAGATGGGGAATG 58.491 52.381 0.00 0.00 33.40 2.67
1815 4255 2.508526 GGAATTCGAGATGGGGAATGG 58.491 52.381 0.00 0.00 33.40 3.16
1816 4256 2.508526 GAATTCGAGATGGGGAATGGG 58.491 52.381 0.00 0.00 33.40 4.00
1817 4257 1.819753 ATTCGAGATGGGGAATGGGA 58.180 50.000 0.00 0.00 31.95 4.37
1818 4258 1.131638 TTCGAGATGGGGAATGGGAG 58.868 55.000 0.00 0.00 0.00 4.30
1819 4259 0.031111 TCGAGATGGGGAATGGGAGT 60.031 55.000 0.00 0.00 0.00 3.85
1820 4260 0.839946 CGAGATGGGGAATGGGAGTT 59.160 55.000 0.00 0.00 0.00 3.01
1821 4261 1.475751 CGAGATGGGGAATGGGAGTTG 60.476 57.143 0.00 0.00 0.00 3.16
1822 4262 1.846439 GAGATGGGGAATGGGAGTTGA 59.154 52.381 0.00 0.00 0.00 3.18
1823 4263 1.849039 AGATGGGGAATGGGAGTTGAG 59.151 52.381 0.00 0.00 0.00 3.02
1824 4264 0.929244 ATGGGGAATGGGAGTTGAGG 59.071 55.000 0.00 0.00 0.00 3.86
1825 4265 1.214305 TGGGGAATGGGAGTTGAGGG 61.214 60.000 0.00 0.00 0.00 4.30
1826 4266 1.615262 GGGAATGGGAGTTGAGGGG 59.385 63.158 0.00 0.00 0.00 4.79
1827 4267 1.214992 GGGAATGGGAGTTGAGGGGT 61.215 60.000 0.00 0.00 0.00 4.95
1828 4268 0.034089 GGAATGGGAGTTGAGGGGTG 60.034 60.000 0.00 0.00 0.00 4.61
1829 4269 0.991920 GAATGGGAGTTGAGGGGTGA 59.008 55.000 0.00 0.00 0.00 4.02
1833 4273 1.268283 GGGAGTTGAGGGGTGAGGAG 61.268 65.000 0.00 0.00 0.00 3.69
1835 4275 1.623834 GGAGTTGAGGGGTGAGGAGAT 60.624 57.143 0.00 0.00 0.00 2.75
1837 4277 3.375699 GAGTTGAGGGGTGAGGAGATAA 58.624 50.000 0.00 0.00 0.00 1.75
1839 4279 4.175962 AGTTGAGGGGTGAGGAGATAAAA 58.824 43.478 0.00 0.00 0.00 1.52
1841 4281 3.803340 TGAGGGGTGAGGAGATAAAAGT 58.197 45.455 0.00 0.00 0.00 2.66
1843 4283 3.116174 AGGGGTGAGGAGATAAAAGTCC 58.884 50.000 0.00 0.00 0.00 3.85
1846 4286 3.519913 GGGTGAGGAGATAAAAGTCCACT 59.480 47.826 0.00 0.00 35.02 4.00
1851 4291 5.997746 TGAGGAGATAAAAGTCCACTGTTTG 59.002 40.000 0.00 0.00 35.02 2.93
1852 4292 6.183361 TGAGGAGATAAAAGTCCACTGTTTGA 60.183 38.462 0.00 0.00 35.02 2.69
1853 4293 6.784031 AGGAGATAAAAGTCCACTGTTTGAT 58.216 36.000 0.00 0.00 35.02 2.57
1854 4294 7.234355 AGGAGATAAAAGTCCACTGTTTGATT 58.766 34.615 0.00 0.00 35.02 2.57
1858 4298 9.442047 AGATAAAAGTCCACTGTTTGATTAGAG 57.558 33.333 0.00 0.00 0.00 2.43
1859 4299 6.884280 AAAAGTCCACTGTTTGATTAGAGG 57.116 37.500 0.00 0.00 0.00 3.69
1860 4300 4.559862 AGTCCACTGTTTGATTAGAGGG 57.440 45.455 0.00 0.00 0.00 4.30
1861 4301 4.168101 AGTCCACTGTTTGATTAGAGGGA 58.832 43.478 0.00 0.00 0.00 4.20
1866 4306 5.587844 CCACTGTTTGATTAGAGGGAATGAG 59.412 44.000 0.00 0.00 0.00 2.90
1867 4307 6.409704 CACTGTTTGATTAGAGGGAATGAGA 58.590 40.000 0.00 0.00 0.00 3.27
1871 4311 7.461749 TGTTTGATTAGAGGGAATGAGAGTTT 58.538 34.615 0.00 0.00 0.00 2.66
1873 4313 9.449719 GTTTGATTAGAGGGAATGAGAGTTTAA 57.550 33.333 0.00 0.00 0.00 1.52
1874 4314 9.672673 TTTGATTAGAGGGAATGAGAGTTTAAG 57.327 33.333 0.00 0.00 0.00 1.85
1875 4315 8.380742 TGATTAGAGGGAATGAGAGTTTAAGT 57.619 34.615 0.00 0.00 0.00 2.24
1878 4318 4.226168 AGAGGGAATGAGAGTTTAAGTGGG 59.774 45.833 0.00 0.00 0.00 4.61
1880 4320 4.601857 AGGGAATGAGAGTTTAAGTGGGAA 59.398 41.667 0.00 0.00 0.00 3.97
1881 4321 4.944317 GGGAATGAGAGTTTAAGTGGGAAG 59.056 45.833 0.00 0.00 0.00 3.46
1882 4322 4.944317 GGAATGAGAGTTTAAGTGGGAAGG 59.056 45.833 0.00 0.00 0.00 3.46
1883 4323 4.576330 ATGAGAGTTTAAGTGGGAAGGG 57.424 45.455 0.00 0.00 0.00 3.95
1885 4325 2.910977 GAGAGTTTAAGTGGGAAGGGGA 59.089 50.000 0.00 0.00 0.00 4.81
1886 4326 3.329814 GAGAGTTTAAGTGGGAAGGGGAA 59.670 47.826 0.00 0.00 0.00 3.97
1890 4330 1.304891 TAAGTGGGAAGGGGAATGGG 58.695 55.000 0.00 0.00 0.00 4.00
1891 4331 0.479589 AAGTGGGAAGGGGAATGGGA 60.480 55.000 0.00 0.00 0.00 4.37
1892 4332 0.921256 AGTGGGAAGGGGAATGGGAG 60.921 60.000 0.00 0.00 0.00 4.30
1893 4333 1.165782 TGGGAAGGGGAATGGGAGT 59.834 57.895 0.00 0.00 0.00 3.85
1894 4334 0.479589 TGGGAAGGGGAATGGGAGTT 60.480 55.000 0.00 0.00 0.00 3.01
1896 4336 0.999712 GGAAGGGGAATGGGAGTTGA 59.000 55.000 0.00 0.00 0.00 3.18
1897 4337 1.064389 GGAAGGGGAATGGGAGTTGAG 60.064 57.143 0.00 0.00 0.00 3.02
1899 4339 2.059756 AGGGGAATGGGAGTTGAGAA 57.940 50.000 0.00 0.00 0.00 2.87
1900 4340 2.358258 AGGGGAATGGGAGTTGAGAAA 58.642 47.619 0.00 0.00 0.00 2.52
1901 4341 2.310052 AGGGGAATGGGAGTTGAGAAAG 59.690 50.000 0.00 0.00 0.00 2.62
1902 4342 2.095461 GGGAATGGGAGTTGAGAAAGC 58.905 52.381 0.00 0.00 0.00 3.51
1903 4343 2.095461 GGAATGGGAGTTGAGAAAGCC 58.905 52.381 0.00 0.00 0.00 4.35
1904 4344 2.555227 GGAATGGGAGTTGAGAAAGCCA 60.555 50.000 0.00 0.00 0.00 4.75
1905 4345 2.978156 ATGGGAGTTGAGAAAGCCAA 57.022 45.000 0.00 0.00 0.00 4.52
1906 4346 2.978156 TGGGAGTTGAGAAAGCCAAT 57.022 45.000 0.00 0.00 0.00 3.16
1907 4347 3.243359 TGGGAGTTGAGAAAGCCAATT 57.757 42.857 0.00 0.00 0.00 2.32
1909 4349 2.493675 GGGAGTTGAGAAAGCCAATTCC 59.506 50.000 0.00 0.00 44.66 3.01
1910 4350 2.493675 GGAGTTGAGAAAGCCAATTCCC 59.506 50.000 0.00 0.00 41.64 3.97
1911 4351 3.157087 GAGTTGAGAAAGCCAATTCCCA 58.843 45.455 0.00 0.00 0.00 4.37
1913 4353 1.923356 TGAGAAAGCCAATTCCCACC 58.077 50.000 0.00 0.00 0.00 4.61
1914 4354 1.428912 TGAGAAAGCCAATTCCCACCT 59.571 47.619 0.00 0.00 0.00 4.00
1915 4355 2.647299 TGAGAAAGCCAATTCCCACCTA 59.353 45.455 0.00 0.00 0.00 3.08
1916 4356 3.269381 TGAGAAAGCCAATTCCCACCTAT 59.731 43.478 0.00 0.00 0.00 2.57
1917 4357 4.264352 TGAGAAAGCCAATTCCCACCTATT 60.264 41.667 0.00 0.00 0.00 1.73
1918 4358 4.687976 AGAAAGCCAATTCCCACCTATTT 58.312 39.130 0.00 0.00 0.00 1.40
1919 4359 4.711846 AGAAAGCCAATTCCCACCTATTTC 59.288 41.667 0.00 0.00 0.00 2.17
1920 4360 4.337264 AAGCCAATTCCCACCTATTTCT 57.663 40.909 0.00 0.00 0.00 2.52
1921 4361 4.337264 AGCCAATTCCCACCTATTTCTT 57.663 40.909 0.00 0.00 0.00 2.52
1922 4362 4.281657 AGCCAATTCCCACCTATTTCTTC 58.718 43.478 0.00 0.00 0.00 2.87
1923 4363 3.384789 GCCAATTCCCACCTATTTCTTCC 59.615 47.826 0.00 0.00 0.00 3.46
1924 4364 3.960755 CCAATTCCCACCTATTTCTTCCC 59.039 47.826 0.00 0.00 0.00 3.97
1925 4365 4.571792 CCAATTCCCACCTATTTCTTCCCA 60.572 45.833 0.00 0.00 0.00 4.37
1926 4366 4.526438 ATTCCCACCTATTTCTTCCCAG 57.474 45.455 0.00 0.00 0.00 4.45
1927 4367 2.205342 TCCCACCTATTTCTTCCCAGG 58.795 52.381 0.00 0.00 0.00 4.45
1928 4368 1.215423 CCCACCTATTTCTTCCCAGGG 59.785 57.143 0.00 0.00 32.12 4.45
1929 4369 1.215423 CCACCTATTTCTTCCCAGGGG 59.785 57.143 5.33 0.92 32.12 4.79
1930 4370 1.215423 CACCTATTTCTTCCCAGGGGG 59.785 57.143 5.33 0.00 46.11 5.40
1931 4371 1.203701 ACCTATTTCTTCCCAGGGGGT 60.204 52.381 5.33 0.00 44.74 4.95
1932 4372 2.048150 ACCTATTTCTTCCCAGGGGGTA 59.952 50.000 5.33 0.00 44.74 3.69
1933 4373 2.442126 CCTATTTCTTCCCAGGGGGTAC 59.558 54.545 5.33 0.00 44.74 3.34
1950 4390 4.198028 GGTACCCTGTTAATTCGTGAGT 57.802 45.455 0.00 0.00 0.00 3.41
1951 4391 5.329035 GGTACCCTGTTAATTCGTGAGTA 57.671 43.478 0.00 0.00 0.00 2.59
1952 4392 5.346522 GGTACCCTGTTAATTCGTGAGTAG 58.653 45.833 0.00 0.00 0.00 2.57
1953 4393 5.126061 GGTACCCTGTTAATTCGTGAGTAGA 59.874 44.000 0.00 0.00 0.00 2.59
1954 4394 5.326200 ACCCTGTTAATTCGTGAGTAGAG 57.674 43.478 0.00 0.00 0.00 2.43
1955 4395 4.771054 ACCCTGTTAATTCGTGAGTAGAGT 59.229 41.667 0.00 0.00 0.00 3.24
1956 4396 5.245526 ACCCTGTTAATTCGTGAGTAGAGTT 59.754 40.000 0.00 0.00 0.00 3.01
1957 4397 6.164176 CCCTGTTAATTCGTGAGTAGAGTTT 58.836 40.000 0.00 0.00 0.00 2.66
1958 4398 6.649557 CCCTGTTAATTCGTGAGTAGAGTTTT 59.350 38.462 0.00 0.00 0.00 2.43
1959 4399 7.816031 CCCTGTTAATTCGTGAGTAGAGTTTTA 59.184 37.037 0.00 0.00 0.00 1.52
1960 4400 9.367444 CCTGTTAATTCGTGAGTAGAGTTTTAT 57.633 33.333 0.00 0.00 0.00 1.40
1965 4405 8.690680 AATTCGTGAGTAGAGTTTTATCTCAC 57.309 34.615 11.89 11.89 46.27 3.51
1967 4407 5.935448 GTGAGTAGAGTTTTATCTCACGC 57.065 43.478 7.64 0.00 43.05 5.34
1968 4408 5.642686 GTGAGTAGAGTTTTATCTCACGCT 58.357 41.667 7.64 0.00 43.05 5.07
1969 4409 6.783162 GTGAGTAGAGTTTTATCTCACGCTA 58.217 40.000 7.64 0.00 43.05 4.26
1970 4410 7.249147 GTGAGTAGAGTTTTATCTCACGCTAA 58.751 38.462 7.64 0.00 43.05 3.09
1971 4411 7.916450 GTGAGTAGAGTTTTATCTCACGCTAAT 59.084 37.037 7.64 0.00 43.05 1.73
1972 4412 8.467598 TGAGTAGAGTTTTATCTCACGCTAATT 58.532 33.333 0.00 0.00 36.97 1.40
1973 4413 8.859517 AGTAGAGTTTTATCTCACGCTAATTC 57.140 34.615 0.00 0.00 36.97 2.17
1974 4414 7.921745 AGTAGAGTTTTATCTCACGCTAATTCC 59.078 37.037 0.00 0.00 36.97 3.01
1975 4415 6.049790 AGAGTTTTATCTCACGCTAATTCCC 58.950 40.000 0.00 0.00 36.97 3.97
1976 4416 5.741011 AGTTTTATCTCACGCTAATTCCCA 58.259 37.500 0.00 0.00 0.00 4.37
1977 4417 6.357367 AGTTTTATCTCACGCTAATTCCCAT 58.643 36.000 0.00 0.00 0.00 4.00
1978 4418 6.483640 AGTTTTATCTCACGCTAATTCCCATC 59.516 38.462 0.00 0.00 0.00 3.51
1979 4419 5.545063 TTATCTCACGCTAATTCCCATCA 57.455 39.130 0.00 0.00 0.00 3.07
1980 4420 4.630644 ATCTCACGCTAATTCCCATCAT 57.369 40.909 0.00 0.00 0.00 2.45
1981 4421 5.745312 ATCTCACGCTAATTCCCATCATA 57.255 39.130 0.00 0.00 0.00 2.15
1982 4422 5.745312 TCTCACGCTAATTCCCATCATAT 57.255 39.130 0.00 0.00 0.00 1.78
1983 4423 6.850752 TCTCACGCTAATTCCCATCATATA 57.149 37.500 0.00 0.00 0.00 0.86
1984 4424 6.631016 TCTCACGCTAATTCCCATCATATAC 58.369 40.000 0.00 0.00 0.00 1.47
1985 4425 5.730550 TCACGCTAATTCCCATCATATACC 58.269 41.667 0.00 0.00 0.00 2.73
1986 4426 5.247337 TCACGCTAATTCCCATCATATACCA 59.753 40.000 0.00 0.00 0.00 3.25
1987 4427 5.937540 CACGCTAATTCCCATCATATACCAA 59.062 40.000 0.00 0.00 0.00 3.67
1988 4428 6.429692 CACGCTAATTCCCATCATATACCAAA 59.570 38.462 0.00 0.00 0.00 3.28
1989 4429 6.430000 ACGCTAATTCCCATCATATACCAAAC 59.570 38.462 0.00 0.00 0.00 2.93
1990 4430 6.429692 CGCTAATTCCCATCATATACCAAACA 59.570 38.462 0.00 0.00 0.00 2.83
1991 4431 7.040755 CGCTAATTCCCATCATATACCAAACAA 60.041 37.037 0.00 0.00 0.00 2.83
1992 4432 8.299570 GCTAATTCCCATCATATACCAAACAAG 58.700 37.037 0.00 0.00 0.00 3.16
1993 4433 7.601705 AATTCCCATCATATACCAAACAAGG 57.398 36.000 0.00 0.00 0.00 3.61
1994 4434 5.060427 TCCCATCATATACCAAACAAGGG 57.940 43.478 0.00 0.00 0.00 3.95
1995 4435 4.729370 TCCCATCATATACCAAACAAGGGA 59.271 41.667 0.00 0.00 39.16 4.20
1996 4436 5.194740 TCCCATCATATACCAAACAAGGGAA 59.805 40.000 0.00 0.00 38.56 3.97
1997 4437 6.077322 CCCATCATATACCAAACAAGGGAAT 58.923 40.000 0.00 0.00 34.49 3.01
1998 4438 6.015180 CCCATCATATACCAAACAAGGGAATG 60.015 42.308 0.00 0.00 34.49 2.67
1999 4439 6.015180 CCATCATATACCAAACAAGGGAATGG 60.015 42.308 0.00 0.00 38.91 3.16
2000 4440 5.454062 TCATATACCAAACAAGGGAATGGG 58.546 41.667 0.00 0.00 37.26 4.00
2001 4441 5.194740 TCATATACCAAACAAGGGAATGGGA 59.805 40.000 0.00 0.00 37.26 4.37
2002 4442 2.309136 ACCAAACAAGGGAATGGGAG 57.691 50.000 0.00 0.00 37.26 4.30
2003 4443 1.503347 ACCAAACAAGGGAATGGGAGT 59.497 47.619 0.00 0.00 37.26 3.85
2004 4444 2.719705 ACCAAACAAGGGAATGGGAGTA 59.280 45.455 0.00 0.00 37.26 2.59
2005 4445 3.141272 ACCAAACAAGGGAATGGGAGTAA 59.859 43.478 0.00 0.00 37.26 2.24
2006 4446 4.156477 CCAAACAAGGGAATGGGAGTAAA 58.844 43.478 0.00 0.00 0.00 2.01
2007 4447 4.591072 CCAAACAAGGGAATGGGAGTAAAA 59.409 41.667 0.00 0.00 0.00 1.52
2008 4448 5.071115 CCAAACAAGGGAATGGGAGTAAAAA 59.929 40.000 0.00 0.00 0.00 1.94
2009 4449 6.239858 CCAAACAAGGGAATGGGAGTAAAAAT 60.240 38.462 0.00 0.00 0.00 1.82
2010 4450 6.605471 AACAAGGGAATGGGAGTAAAAATC 57.395 37.500 0.00 0.00 0.00 2.17
2011 4451 5.903923 ACAAGGGAATGGGAGTAAAAATCT 58.096 37.500 0.00 0.00 0.00 2.40
2012 4452 7.039722 ACAAGGGAATGGGAGTAAAAATCTA 57.960 36.000 0.00 0.00 0.00 1.98
2013 4453 6.890268 ACAAGGGAATGGGAGTAAAAATCTAC 59.110 38.462 0.00 0.00 0.00 2.59
2014 4454 6.910259 AGGGAATGGGAGTAAAAATCTACT 57.090 37.500 0.00 0.00 34.76 2.57
2015 4455 7.285340 AGGGAATGGGAGTAAAAATCTACTT 57.715 36.000 0.00 0.00 32.14 2.24
2016 4456 7.347252 AGGGAATGGGAGTAAAAATCTACTTC 58.653 38.462 0.00 0.00 32.14 3.01
2017 4457 6.546403 GGGAATGGGAGTAAAAATCTACTTCC 59.454 42.308 1.66 1.66 44.96 3.46
2018 4458 6.546403 GGAATGGGAGTAAAAATCTACTTCCC 59.454 42.308 5.77 7.96 44.34 3.97
2019 4459 6.652205 ATGGGAGTAAAAATCTACTTCCCA 57.348 37.500 11.39 11.39 44.34 4.37
2020 4460 6.652205 TGGGAGTAAAAATCTACTTCCCAT 57.348 37.500 5.28 0.00 44.34 4.00
2021 4461 6.423182 TGGGAGTAAAAATCTACTTCCCATG 58.577 40.000 5.28 0.00 44.34 3.66
2022 4462 6.216662 TGGGAGTAAAAATCTACTTCCCATGA 59.783 38.462 5.28 0.00 44.34 3.07
2023 4463 6.542735 GGGAGTAAAAATCTACTTCCCATGAC 59.457 42.308 0.00 0.00 40.52 3.06
2024 4464 7.339482 GGAGTAAAAATCTACTTCCCATGACT 58.661 38.462 0.00 0.00 32.14 3.41
2025 4465 8.483758 GGAGTAAAAATCTACTTCCCATGACTA 58.516 37.037 0.00 0.00 32.14 2.59
2026 4466 9.315525 GAGTAAAAATCTACTTCCCATGACTAC 57.684 37.037 0.00 0.00 32.14 2.73
2027 4467 9.047947 AGTAAAAATCTACTTCCCATGACTACT 57.952 33.333 0.00 0.00 0.00 2.57
2028 4468 9.315525 GTAAAAATCTACTTCCCATGACTACTC 57.684 37.037 0.00 0.00 0.00 2.59
2029 4469 6.487299 AAATCTACTTCCCATGACTACTCC 57.513 41.667 0.00 0.00 0.00 3.85
2030 4470 3.912248 TCTACTTCCCATGACTACTCCC 58.088 50.000 0.00 0.00 0.00 4.30
2031 4471 2.950990 ACTTCCCATGACTACTCCCT 57.049 50.000 0.00 0.00 0.00 4.20
2032 4472 2.753247 ACTTCCCATGACTACTCCCTC 58.247 52.381 0.00 0.00 0.00 4.30
2033 4473 2.043227 CTTCCCATGACTACTCCCTCC 58.957 57.143 0.00 0.00 0.00 4.30
2034 4474 1.015609 TCCCATGACTACTCCCTCCA 58.984 55.000 0.00 0.00 0.00 3.86
2035 4475 1.580658 TCCCATGACTACTCCCTCCAT 59.419 52.381 0.00 0.00 0.00 3.41
2036 4476 2.795360 TCCCATGACTACTCCCTCCATA 59.205 50.000 0.00 0.00 0.00 2.74
2037 4477 3.208922 TCCCATGACTACTCCCTCCATAA 59.791 47.826 0.00 0.00 0.00 1.90
2038 4478 3.973973 CCCATGACTACTCCCTCCATAAA 59.026 47.826 0.00 0.00 0.00 1.40
2039 4479 4.202367 CCCATGACTACTCCCTCCATAAAC 60.202 50.000 0.00 0.00 0.00 2.01
2040 4480 4.408921 CCATGACTACTCCCTCCATAAACA 59.591 45.833 0.00 0.00 0.00 2.83
2041 4481 5.360591 CATGACTACTCCCTCCATAAACAC 58.639 45.833 0.00 0.00 0.00 3.32
2042 4482 4.684724 TGACTACTCCCTCCATAAACACT 58.315 43.478 0.00 0.00 0.00 3.55
2043 4483 4.710375 TGACTACTCCCTCCATAAACACTC 59.290 45.833 0.00 0.00 0.00 3.51
2044 4484 4.949121 ACTACTCCCTCCATAAACACTCT 58.051 43.478 0.00 0.00 0.00 3.24
2045 4485 5.342866 ACTACTCCCTCCATAAACACTCTT 58.657 41.667 0.00 0.00 0.00 2.85
2046 4486 6.500336 ACTACTCCCTCCATAAACACTCTTA 58.500 40.000 0.00 0.00 0.00 2.10
2047 4487 7.133483 ACTACTCCCTCCATAAACACTCTTAT 58.867 38.462 0.00 0.00 0.00 1.73
2048 4488 6.240549 ACTCCCTCCATAAACACTCTTATG 57.759 41.667 0.00 0.00 38.48 1.90
2049 4489 5.036117 TCCCTCCATAAACACTCTTATGC 57.964 43.478 0.00 0.00 37.76 3.14
2050 4490 4.473196 TCCCTCCATAAACACTCTTATGCA 59.527 41.667 0.00 0.00 37.76 3.96
2051 4491 5.045213 TCCCTCCATAAACACTCTTATGCAA 60.045 40.000 0.00 0.00 37.76 4.08
2052 4492 5.652014 CCCTCCATAAACACTCTTATGCAAA 59.348 40.000 0.00 0.00 37.76 3.68
2053 4493 6.404734 CCCTCCATAAACACTCTTATGCAAAC 60.405 42.308 0.00 0.00 37.76 2.93
2054 4494 6.375455 CCTCCATAAACACTCTTATGCAAACT 59.625 38.462 0.00 0.00 37.76 2.66
2055 4495 7.377766 TCCATAAACACTCTTATGCAAACTC 57.622 36.000 0.00 0.00 37.76 3.01
2056 4496 7.168219 TCCATAAACACTCTTATGCAAACTCT 58.832 34.615 0.00 0.00 37.76 3.24
2057 4497 7.334421 TCCATAAACACTCTTATGCAAACTCTC 59.666 37.037 0.00 0.00 37.76 3.20
2058 4498 7.119699 CCATAAACACTCTTATGCAAACTCTCA 59.880 37.037 0.00 0.00 37.76 3.27
2059 4499 8.671921 CATAAACACTCTTATGCAAACTCTCAT 58.328 33.333 0.00 0.00 33.67 2.90
2060 4500 7.516198 AAACACTCTTATGCAAACTCTCATT 57.484 32.000 0.00 0.00 0.00 2.57
2061 4501 6.734104 ACACTCTTATGCAAACTCTCATTC 57.266 37.500 0.00 0.00 0.00 2.67
2062 4502 5.645497 ACACTCTTATGCAAACTCTCATTCC 59.355 40.000 0.00 0.00 0.00 3.01
2063 4503 5.065731 CACTCTTATGCAAACTCTCATTCCC 59.934 44.000 0.00 0.00 0.00 3.97
2064 4504 4.526970 TCTTATGCAAACTCTCATTCCCC 58.473 43.478 0.00 0.00 0.00 4.81
2065 4505 4.228210 TCTTATGCAAACTCTCATTCCCCT 59.772 41.667 0.00 0.00 0.00 4.79
2066 4506 2.205022 TGCAAACTCTCATTCCCCTG 57.795 50.000 0.00 0.00 0.00 4.45
2067 4507 0.813821 GCAAACTCTCATTCCCCTGC 59.186 55.000 0.00 0.00 0.00 4.85
2068 4508 1.467920 CAAACTCTCATTCCCCTGCC 58.532 55.000 0.00 0.00 0.00 4.85
2069 4509 0.332972 AAACTCTCATTCCCCTGCCC 59.667 55.000 0.00 0.00 0.00 5.36
2070 4510 0.846427 AACTCTCATTCCCCTGCCCA 60.846 55.000 0.00 0.00 0.00 5.36
2119 4559 0.449388 GGCTTGACTGCGGAATGAAG 59.551 55.000 0.00 0.00 0.00 3.02
2141 4581 5.783111 AGTGTGAGCTTTTCTGTTGTTTTT 58.217 33.333 0.00 0.00 0.00 1.94
2260 4728 3.391965 GACTATCTGAGGCTCTGCATTG 58.608 50.000 16.72 12.80 0.00 2.82
2264 4732 1.627329 TCTGAGGCTCTGCATTGAACT 59.373 47.619 16.72 0.00 0.00 3.01
2391 4865 4.633565 CCAACTCATAGGTTGCTTCTCTTC 59.366 45.833 0.00 0.00 43.48 2.87
2554 5030 3.633065 CCTAGCTGGTAGTAGGAGTGTTC 59.367 52.174 12.43 0.00 38.54 3.18
2563 5042 6.324512 TGGTAGTAGGAGTGTTCAGTTGTAAA 59.675 38.462 0.00 0.00 0.00 2.01
2599 5153 7.801547 AACTTTGTTTCTATCAAATGCATCG 57.198 32.000 0.00 0.00 34.88 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.104633 GCAGTGTCGAACGTCGCG 62.105 66.667 0.00 0.00 40.21 5.87
36 37 3.262420 GACGAATAGGTTGATGCAGTGT 58.738 45.455 0.00 0.00 0.00 3.55
171 172 1.183030 CCTCCACTGTGGTCACCGTA 61.183 60.000 25.15 4.41 39.03 4.02
172 173 2.507854 CCTCCACTGTGGTCACCGT 61.508 63.158 25.15 0.00 39.03 4.83
316 317 1.131126 GTTCGACGTCGGAACTATGGA 59.869 52.381 35.05 12.03 40.29 3.41
331 332 2.029964 GGTCTGGCCGTTGTTCGA 59.970 61.111 0.00 0.00 42.86 3.71
372 373 2.105128 CCAGGGAGCATCGTCGTC 59.895 66.667 0.00 0.00 34.37 4.20
453 456 5.273208 AGTACAGAGAGAATAGGCCAAGAA 58.727 41.667 5.01 0.00 0.00 2.52
476 483 0.032540 ATCATGCACGCATCGCTCTA 59.967 50.000 0.44 0.00 33.90 2.43
500 507 7.855545 TCACTTCAATCTTTCTTTTCTTCTCG 58.144 34.615 0.00 0.00 0.00 4.04
545 556 4.018960 AGGAGACATAAAACCTGCAGTCAT 60.019 41.667 13.81 0.00 0.00 3.06
607 623 2.722629 GTCGTCGTGTCTTTTCGAATCA 59.277 45.455 0.00 0.00 37.81 2.57
770 786 4.451096 AGGCGGTTGCTTTATTCGTATATG 59.549 41.667 0.00 0.00 42.25 1.78
771 787 4.638304 AGGCGGTTGCTTTATTCGTATAT 58.362 39.130 0.00 0.00 42.25 0.86
772 788 4.062677 AGGCGGTTGCTTTATTCGTATA 57.937 40.909 0.00 0.00 42.25 1.47
773 789 2.914059 AGGCGGTTGCTTTATTCGTAT 58.086 42.857 0.00 0.00 42.25 3.06
774 790 2.389962 AGGCGGTTGCTTTATTCGTA 57.610 45.000 0.00 0.00 42.25 3.43
775 791 2.093869 TCTAGGCGGTTGCTTTATTCGT 60.094 45.455 0.00 0.00 42.25 3.85
776 792 2.284417 GTCTAGGCGGTTGCTTTATTCG 59.716 50.000 0.00 0.00 42.25 3.34
777 793 2.612672 GGTCTAGGCGGTTGCTTTATTC 59.387 50.000 0.00 0.00 42.25 1.75
778 794 2.238898 AGGTCTAGGCGGTTGCTTTATT 59.761 45.455 0.00 0.00 42.25 1.40
784 800 1.448013 GTGAGGTCTAGGCGGTTGC 60.448 63.158 0.00 0.00 41.71 4.17
906 922 3.373565 GGGCGGGAGGTGCTTTTG 61.374 66.667 0.00 0.00 0.00 2.44
907 923 4.678743 GGGGCGGGAGGTGCTTTT 62.679 66.667 0.00 0.00 0.00 2.27
958 987 3.542604 GAGGGGGTTTATATGGGAGGAT 58.457 50.000 0.00 0.00 0.00 3.24
959 988 2.762114 CGAGGGGGTTTATATGGGAGGA 60.762 54.545 0.00 0.00 0.00 3.71
961 990 1.003233 GCGAGGGGGTTTATATGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
962 991 1.061546 GCGAGGGGGTTTATATGGGA 58.938 55.000 0.00 0.00 0.00 4.37
987 1020 1.321805 TTGCGATGGGCTTTGGGATG 61.322 55.000 0.00 0.00 44.05 3.51
993 1026 0.966875 TGATGCTTGCGATGGGCTTT 60.967 50.000 0.00 0.00 44.05 3.51
996 1029 1.820906 TCTGATGCTTGCGATGGGC 60.821 57.895 0.00 0.00 43.96 5.36
1039 1082 2.243810 GCGAGAGAGGGTGATTAGGAT 58.756 52.381 0.00 0.00 0.00 3.24
1207 1281 2.647356 CTCGTAGATGAGGCCGGAT 58.353 57.895 5.05 0.00 33.89 4.18
1261 1362 4.141965 ATGGCGTCGCGGATGACA 62.142 61.111 11.75 7.57 41.16 3.58
1277 1378 1.511305 CGTGCTCGGTGTAGGTGAT 59.489 57.895 0.00 0.00 0.00 3.06
1406 1530 2.625737 AGCACATATCACACAGAGCAC 58.374 47.619 0.00 0.00 0.00 4.40
1427 1553 6.197168 ACAAATCAGTAAATCCATCCACCAT 58.803 36.000 0.00 0.00 0.00 3.55
1451 1578 2.339418 ACAGAACACAACGACGAACAA 58.661 42.857 0.00 0.00 0.00 2.83
1452 1579 1.921887 GACAGAACACAACGACGAACA 59.078 47.619 0.00 0.00 0.00 3.18
1537 3848 1.512734 GCAGTGAAGCATTTCGCCG 60.513 57.895 0.00 0.00 43.32 6.46
1648 4029 0.532862 ACTGGGAAGCAACGAGTGTG 60.533 55.000 0.00 0.00 0.00 3.82
1690 4071 7.032580 ACGAGATTCAAATACTTGAGACTGAG 58.967 38.462 0.00 0.00 42.48 3.35
1775 4215 2.231529 CCCCGAACCAAACACATTGTA 58.768 47.619 0.00 0.00 37.32 2.41
1776 4216 1.036707 CCCCGAACCAAACACATTGT 58.963 50.000 0.00 0.00 37.32 2.71
1777 4217 0.316841 CCCCCGAACCAAACACATTG 59.683 55.000 0.00 0.00 38.84 2.82
1778 4218 0.186386 TCCCCCGAACCAAACACATT 59.814 50.000 0.00 0.00 0.00 2.71
1779 4219 0.186386 TTCCCCCGAACCAAACACAT 59.814 50.000 0.00 0.00 0.00 3.21
1780 4220 0.186386 ATTCCCCCGAACCAAACACA 59.814 50.000 0.00 0.00 0.00 3.72
1781 4221 1.271379 GAATTCCCCCGAACCAAACAC 59.729 52.381 0.00 0.00 0.00 3.32
1782 4222 1.623163 GAATTCCCCCGAACCAAACA 58.377 50.000 0.00 0.00 0.00 2.83
1783 4223 0.524414 CGAATTCCCCCGAACCAAAC 59.476 55.000 0.00 0.00 0.00 2.93
1784 4224 0.400975 TCGAATTCCCCCGAACCAAA 59.599 50.000 0.00 0.00 0.00 3.28
1785 4225 0.035820 CTCGAATTCCCCCGAACCAA 60.036 55.000 0.00 0.00 34.17 3.67
1786 4226 0.905809 TCTCGAATTCCCCCGAACCA 60.906 55.000 0.00 0.00 34.17 3.67
1787 4227 0.468648 ATCTCGAATTCCCCCGAACC 59.531 55.000 0.00 0.00 34.17 3.62
1788 4228 1.583054 CATCTCGAATTCCCCCGAAC 58.417 55.000 0.00 0.00 34.17 3.95
1789 4229 0.468226 CCATCTCGAATTCCCCCGAA 59.532 55.000 0.00 0.00 34.17 4.30
1790 4230 1.407656 CCCATCTCGAATTCCCCCGA 61.408 60.000 0.00 0.00 0.00 5.14
1791 4231 1.071471 CCCATCTCGAATTCCCCCG 59.929 63.158 0.00 0.00 0.00 5.73
1792 4232 1.060163 TCCCCATCTCGAATTCCCCC 61.060 60.000 0.00 0.00 0.00 5.40
1793 4233 0.843984 TTCCCCATCTCGAATTCCCC 59.156 55.000 0.00 0.00 0.00 4.81
1794 4234 2.508526 CATTCCCCATCTCGAATTCCC 58.491 52.381 0.00 0.00 0.00 3.97
1795 4235 2.508526 CCATTCCCCATCTCGAATTCC 58.491 52.381 0.00 0.00 0.00 3.01
1796 4236 2.106511 TCCCATTCCCCATCTCGAATTC 59.893 50.000 0.00 0.00 0.00 2.17
1797 4237 2.107204 CTCCCATTCCCCATCTCGAATT 59.893 50.000 0.00 0.00 0.00 2.17
1798 4238 1.701847 CTCCCATTCCCCATCTCGAAT 59.298 52.381 0.00 0.00 0.00 3.34
1799 4239 1.131638 CTCCCATTCCCCATCTCGAA 58.868 55.000 0.00 0.00 0.00 3.71
1800 4240 0.031111 ACTCCCATTCCCCATCTCGA 60.031 55.000 0.00 0.00 0.00 4.04
1801 4241 0.839946 AACTCCCATTCCCCATCTCG 59.160 55.000 0.00 0.00 0.00 4.04
1802 4242 1.846439 TCAACTCCCATTCCCCATCTC 59.154 52.381 0.00 0.00 0.00 2.75
1803 4243 1.849039 CTCAACTCCCATTCCCCATCT 59.151 52.381 0.00 0.00 0.00 2.90
1804 4244 1.133668 CCTCAACTCCCATTCCCCATC 60.134 57.143 0.00 0.00 0.00 3.51
1805 4245 0.929244 CCTCAACTCCCATTCCCCAT 59.071 55.000 0.00 0.00 0.00 4.00
1806 4246 1.214305 CCCTCAACTCCCATTCCCCA 61.214 60.000 0.00 0.00 0.00 4.96
1807 4247 1.615262 CCCTCAACTCCCATTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
1808 4248 1.214992 ACCCCTCAACTCCCATTCCC 61.215 60.000 0.00 0.00 0.00 3.97
1809 4249 0.034089 CACCCCTCAACTCCCATTCC 60.034 60.000 0.00 0.00 0.00 3.01
1810 4250 0.991920 TCACCCCTCAACTCCCATTC 59.008 55.000 0.00 0.00 0.00 2.67
1811 4251 0.995024 CTCACCCCTCAACTCCCATT 59.005 55.000 0.00 0.00 0.00 3.16
1812 4252 0.916358 CCTCACCCCTCAACTCCCAT 60.916 60.000 0.00 0.00 0.00 4.00
1813 4253 1.538876 CCTCACCCCTCAACTCCCA 60.539 63.158 0.00 0.00 0.00 4.37
1814 4254 1.229529 TCCTCACCCCTCAACTCCC 60.230 63.158 0.00 0.00 0.00 4.30
1815 4255 0.252284 TCTCCTCACCCCTCAACTCC 60.252 60.000 0.00 0.00 0.00 3.85
1816 4256 1.872773 ATCTCCTCACCCCTCAACTC 58.127 55.000 0.00 0.00 0.00 3.01
1817 4257 3.491766 TTATCTCCTCACCCCTCAACT 57.508 47.619 0.00 0.00 0.00 3.16
1818 4258 4.019231 ACTTTTATCTCCTCACCCCTCAAC 60.019 45.833 0.00 0.00 0.00 3.18
1819 4259 4.175962 ACTTTTATCTCCTCACCCCTCAA 58.824 43.478 0.00 0.00 0.00 3.02
1820 4260 3.775316 GACTTTTATCTCCTCACCCCTCA 59.225 47.826 0.00 0.00 0.00 3.86
1821 4261 3.134985 GGACTTTTATCTCCTCACCCCTC 59.865 52.174 0.00 0.00 0.00 4.30
1822 4262 3.116174 GGACTTTTATCTCCTCACCCCT 58.884 50.000 0.00 0.00 0.00 4.79
1823 4263 2.844348 TGGACTTTTATCTCCTCACCCC 59.156 50.000 0.00 0.00 0.00 4.95
1824 4264 3.519913 AGTGGACTTTTATCTCCTCACCC 59.480 47.826 0.00 0.00 0.00 4.61
1825 4265 4.020128 ACAGTGGACTTTTATCTCCTCACC 60.020 45.833 0.00 0.00 0.00 4.02
1826 4266 5.153950 ACAGTGGACTTTTATCTCCTCAC 57.846 43.478 0.00 0.00 0.00 3.51
1827 4267 5.825593 AACAGTGGACTTTTATCTCCTCA 57.174 39.130 0.00 0.00 0.00 3.86
1828 4268 6.231211 TCAAACAGTGGACTTTTATCTCCTC 58.769 40.000 0.00 0.00 0.00 3.71
1829 4269 6.187727 TCAAACAGTGGACTTTTATCTCCT 57.812 37.500 0.00 0.00 0.00 3.69
1833 4273 8.669243 CCTCTAATCAAACAGTGGACTTTTATC 58.331 37.037 0.00 0.00 0.00 1.75
1835 4275 6.940298 CCCTCTAATCAAACAGTGGACTTTTA 59.060 38.462 0.00 0.00 0.00 1.52
1837 4277 5.073144 TCCCTCTAATCAAACAGTGGACTTT 59.927 40.000 0.00 0.00 0.00 2.66
1839 4279 4.168101 TCCCTCTAATCAAACAGTGGACT 58.832 43.478 0.00 0.00 0.00 3.85
1841 4281 5.250543 TCATTCCCTCTAATCAAACAGTGGA 59.749 40.000 0.00 0.00 0.00 4.02
1843 4283 6.409704 TCTCATTCCCTCTAATCAAACAGTG 58.590 40.000 0.00 0.00 0.00 3.66
1846 4286 6.627087 ACTCTCATTCCCTCTAATCAAACA 57.373 37.500 0.00 0.00 0.00 2.83
1851 4291 7.713073 CCACTTAAACTCTCATTCCCTCTAATC 59.287 40.741 0.00 0.00 0.00 1.75
1852 4292 7.366011 CCCACTTAAACTCTCATTCCCTCTAAT 60.366 40.741 0.00 0.00 0.00 1.73
1853 4293 6.070194 CCCACTTAAACTCTCATTCCCTCTAA 60.070 42.308 0.00 0.00 0.00 2.10
1854 4294 5.425539 CCCACTTAAACTCTCATTCCCTCTA 59.574 44.000 0.00 0.00 0.00 2.43
1858 4298 4.569719 TCCCACTTAAACTCTCATTCCC 57.430 45.455 0.00 0.00 0.00 3.97
1859 4299 4.944317 CCTTCCCACTTAAACTCTCATTCC 59.056 45.833 0.00 0.00 0.00 3.01
1860 4300 4.944317 CCCTTCCCACTTAAACTCTCATTC 59.056 45.833 0.00 0.00 0.00 2.67
1861 4301 4.263949 CCCCTTCCCACTTAAACTCTCATT 60.264 45.833 0.00 0.00 0.00 2.57
1866 4306 3.801307 TTCCCCTTCCCACTTAAACTC 57.199 47.619 0.00 0.00 0.00 3.01
1867 4307 3.245622 CCATTCCCCTTCCCACTTAAACT 60.246 47.826 0.00 0.00 0.00 2.66
1871 4311 1.203635 TCCCATTCCCCTTCCCACTTA 60.204 52.381 0.00 0.00 0.00 2.24
1873 4313 0.921256 CTCCCATTCCCCTTCCCACT 60.921 60.000 0.00 0.00 0.00 4.00
1874 4314 1.214992 ACTCCCATTCCCCTTCCCAC 61.215 60.000 0.00 0.00 0.00 4.61
1875 4315 0.479589 AACTCCCATTCCCCTTCCCA 60.480 55.000 0.00 0.00 0.00 4.37
1878 4318 1.916181 TCTCAACTCCCATTCCCCTTC 59.084 52.381 0.00 0.00 0.00 3.46
1880 4320 2.059756 TTCTCAACTCCCATTCCCCT 57.940 50.000 0.00 0.00 0.00 4.79
1881 4321 2.728007 CTTTCTCAACTCCCATTCCCC 58.272 52.381 0.00 0.00 0.00 4.81
1882 4322 2.095461 GCTTTCTCAACTCCCATTCCC 58.905 52.381 0.00 0.00 0.00 3.97
1883 4323 2.095461 GGCTTTCTCAACTCCCATTCC 58.905 52.381 0.00 0.00 0.00 3.01
1885 4325 2.978156 TGGCTTTCTCAACTCCCATT 57.022 45.000 0.00 0.00 0.00 3.16
1886 4326 2.978156 TTGGCTTTCTCAACTCCCAT 57.022 45.000 0.00 0.00 0.00 4.00
1890 4330 3.057245 GTGGGAATTGGCTTTCTCAACTC 60.057 47.826 5.13 0.00 37.82 3.01
1891 4331 2.893489 GTGGGAATTGGCTTTCTCAACT 59.107 45.455 5.13 0.00 37.82 3.16
1892 4332 2.029020 GGTGGGAATTGGCTTTCTCAAC 60.029 50.000 5.13 4.30 37.82 3.18
1893 4333 2.158325 AGGTGGGAATTGGCTTTCTCAA 60.158 45.455 5.13 0.00 37.82 3.02
1894 4334 1.428912 AGGTGGGAATTGGCTTTCTCA 59.571 47.619 0.05 0.05 33.72 3.27
1896 4336 4.337264 AATAGGTGGGAATTGGCTTTCT 57.663 40.909 0.00 0.00 0.00 2.52
1897 4337 4.711846 AGAAATAGGTGGGAATTGGCTTTC 59.288 41.667 0.00 0.00 0.00 2.62
1899 4339 4.337264 AGAAATAGGTGGGAATTGGCTT 57.663 40.909 0.00 0.00 0.00 4.35
1900 4340 4.281657 GAAGAAATAGGTGGGAATTGGCT 58.718 43.478 0.00 0.00 0.00 4.75
1901 4341 3.384789 GGAAGAAATAGGTGGGAATTGGC 59.615 47.826 0.00 0.00 0.00 4.52
1902 4342 3.960755 GGGAAGAAATAGGTGGGAATTGG 59.039 47.826 0.00 0.00 0.00 3.16
1903 4343 4.609301 TGGGAAGAAATAGGTGGGAATTG 58.391 43.478 0.00 0.00 0.00 2.32
1904 4344 4.326132 CCTGGGAAGAAATAGGTGGGAATT 60.326 45.833 0.00 0.00 0.00 2.17
1905 4345 3.205282 CCTGGGAAGAAATAGGTGGGAAT 59.795 47.826 0.00 0.00 0.00 3.01
1906 4346 2.580783 CCTGGGAAGAAATAGGTGGGAA 59.419 50.000 0.00 0.00 0.00 3.97
1907 4347 2.205342 CCTGGGAAGAAATAGGTGGGA 58.795 52.381 0.00 0.00 0.00 4.37
1909 4349 1.215423 CCCCTGGGAAGAAATAGGTGG 59.785 57.143 16.20 0.00 37.50 4.61
1910 4350 2.736670 CCCCTGGGAAGAAATAGGTG 57.263 55.000 16.20 0.00 37.50 4.00
1930 4370 6.127786 ACTCTACTCACGAATTAACAGGGTAC 60.128 42.308 0.00 0.00 0.00 3.34
1931 4371 5.948162 ACTCTACTCACGAATTAACAGGGTA 59.052 40.000 0.00 0.00 0.00 3.69
1932 4372 4.771054 ACTCTACTCACGAATTAACAGGGT 59.229 41.667 0.00 0.00 0.00 4.34
1933 4373 5.326200 ACTCTACTCACGAATTAACAGGG 57.674 43.478 0.00 0.00 0.00 4.45
1934 4374 7.653767 AAAACTCTACTCACGAATTAACAGG 57.346 36.000 0.00 0.00 0.00 4.00
1939 4379 9.784680 GTGAGATAAAACTCTACTCACGAATTA 57.215 33.333 0.00 0.00 44.51 1.40
1940 4380 8.690680 GTGAGATAAAACTCTACTCACGAATT 57.309 34.615 0.00 0.00 44.51 2.17
1945 4385 7.916450 ATTAGCGTGAGATAAAACTCTACTCAC 59.084 37.037 0.00 0.00 45.90 3.51
1946 4386 5.899120 AGCGTGAGATAAAACTCTACTCA 57.101 39.130 0.00 0.00 37.73 3.41
1947 4387 8.859517 AATTAGCGTGAGATAAAACTCTACTC 57.140 34.615 0.00 0.00 45.90 2.59
1948 4388 7.921745 GGAATTAGCGTGAGATAAAACTCTACT 59.078 37.037 0.00 0.00 45.90 2.57
1949 4389 7.169476 GGGAATTAGCGTGAGATAAAACTCTAC 59.831 40.741 0.00 0.00 45.90 2.59
1950 4390 7.147794 TGGGAATTAGCGTGAGATAAAACTCTA 60.148 37.037 0.00 0.00 45.90 2.43
1951 4391 6.049790 GGGAATTAGCGTGAGATAAAACTCT 58.950 40.000 0.00 0.00 45.90 3.24
1952 4392 5.815740 TGGGAATTAGCGTGAGATAAAACTC 59.184 40.000 0.00 0.00 45.90 3.01
1953 4393 5.741011 TGGGAATTAGCGTGAGATAAAACT 58.259 37.500 0.00 0.00 45.90 2.66
1954 4394 6.260050 TGATGGGAATTAGCGTGAGATAAAAC 59.740 38.462 0.00 0.00 45.90 2.43
1955 4395 6.353323 TGATGGGAATTAGCGTGAGATAAAA 58.647 36.000 0.00 0.00 45.90 1.52
1956 4396 5.924356 TGATGGGAATTAGCGTGAGATAAA 58.076 37.500 0.00 0.00 45.90 1.40
1957 4397 5.545063 TGATGGGAATTAGCGTGAGATAA 57.455 39.130 0.00 0.00 46.91 1.75
1958 4398 5.745312 ATGATGGGAATTAGCGTGAGATA 57.255 39.130 0.00 0.00 0.00 1.98
1959 4399 4.630644 ATGATGGGAATTAGCGTGAGAT 57.369 40.909 0.00 0.00 0.00 2.75
1960 4400 5.745312 ATATGATGGGAATTAGCGTGAGA 57.255 39.130 0.00 0.00 0.00 3.27
1961 4401 5.812642 GGTATATGATGGGAATTAGCGTGAG 59.187 44.000 0.00 0.00 0.00 3.51
1962 4402 5.247337 TGGTATATGATGGGAATTAGCGTGA 59.753 40.000 0.00 0.00 0.00 4.35
1963 4403 5.487433 TGGTATATGATGGGAATTAGCGTG 58.513 41.667 0.00 0.00 0.00 5.34
1964 4404 5.755409 TGGTATATGATGGGAATTAGCGT 57.245 39.130 0.00 0.00 0.00 5.07
1965 4405 6.429692 TGTTTGGTATATGATGGGAATTAGCG 59.570 38.462 0.00 0.00 0.00 4.26
1966 4406 7.759489 TGTTTGGTATATGATGGGAATTAGC 57.241 36.000 0.00 0.00 0.00 3.09
1967 4407 8.796475 CCTTGTTTGGTATATGATGGGAATTAG 58.204 37.037 0.00 0.00 0.00 1.73
1968 4408 7.728083 CCCTTGTTTGGTATATGATGGGAATTA 59.272 37.037 0.00 0.00 33.14 1.40
1969 4409 6.554605 CCCTTGTTTGGTATATGATGGGAATT 59.445 38.462 0.00 0.00 33.14 2.17
1970 4410 6.077322 CCCTTGTTTGGTATATGATGGGAAT 58.923 40.000 0.00 0.00 33.14 3.01
1971 4411 5.194740 TCCCTTGTTTGGTATATGATGGGAA 59.805 40.000 0.00 0.00 37.12 3.97
1972 4412 4.729370 TCCCTTGTTTGGTATATGATGGGA 59.271 41.667 0.00 0.00 37.65 4.37
1973 4413 5.060427 TCCCTTGTTTGGTATATGATGGG 57.940 43.478 0.00 0.00 0.00 4.00
1974 4414 6.015180 CCATTCCCTTGTTTGGTATATGATGG 60.015 42.308 0.00 0.00 0.00 3.51
1975 4415 6.015180 CCCATTCCCTTGTTTGGTATATGATG 60.015 42.308 0.00 0.00 0.00 3.07
1976 4416 6.077322 CCCATTCCCTTGTTTGGTATATGAT 58.923 40.000 0.00 0.00 0.00 2.45
1977 4417 5.194740 TCCCATTCCCTTGTTTGGTATATGA 59.805 40.000 0.00 0.00 0.00 2.15
1978 4418 5.454062 TCCCATTCCCTTGTTTGGTATATG 58.546 41.667 0.00 0.00 0.00 1.78
1979 4419 5.195756 ACTCCCATTCCCTTGTTTGGTATAT 59.804 40.000 0.00 0.00 0.00 0.86
1980 4420 4.542525 ACTCCCATTCCCTTGTTTGGTATA 59.457 41.667 0.00 0.00 0.00 1.47
1981 4421 3.336694 ACTCCCATTCCCTTGTTTGGTAT 59.663 43.478 0.00 0.00 0.00 2.73
1982 4422 2.719705 ACTCCCATTCCCTTGTTTGGTA 59.280 45.455 0.00 0.00 0.00 3.25
1983 4423 1.503347 ACTCCCATTCCCTTGTTTGGT 59.497 47.619 0.00 0.00 0.00 3.67
1984 4424 2.309136 ACTCCCATTCCCTTGTTTGG 57.691 50.000 0.00 0.00 0.00 3.28
1985 4425 5.799827 TTTTACTCCCATTCCCTTGTTTG 57.200 39.130 0.00 0.00 0.00 2.93
1986 4426 6.787458 AGATTTTTACTCCCATTCCCTTGTTT 59.213 34.615 0.00 0.00 0.00 2.83
1987 4427 6.322931 AGATTTTTACTCCCATTCCCTTGTT 58.677 36.000 0.00 0.00 0.00 2.83
1988 4428 5.903923 AGATTTTTACTCCCATTCCCTTGT 58.096 37.500 0.00 0.00 0.00 3.16
1989 4429 7.119387 AGTAGATTTTTACTCCCATTCCCTTG 58.881 38.462 0.00 0.00 0.00 3.61
1990 4430 7.285340 AGTAGATTTTTACTCCCATTCCCTT 57.715 36.000 0.00 0.00 0.00 3.95
1991 4431 6.910259 AGTAGATTTTTACTCCCATTCCCT 57.090 37.500 0.00 0.00 0.00 4.20
1992 4432 6.546403 GGAAGTAGATTTTTACTCCCATTCCC 59.454 42.308 0.00 0.00 32.84 3.97
1993 4433 6.546403 GGGAAGTAGATTTTTACTCCCATTCC 59.454 42.308 12.09 0.00 38.95 3.01
1994 4434 7.116736 TGGGAAGTAGATTTTTACTCCCATTC 58.883 38.462 14.16 0.00 41.21 2.67
1995 4435 7.039722 TGGGAAGTAGATTTTTACTCCCATT 57.960 36.000 14.16 0.00 41.21 3.16
1996 4436 6.652205 TGGGAAGTAGATTTTTACTCCCAT 57.348 37.500 14.16 0.00 41.21 4.00
1997 4437 6.216662 TCATGGGAAGTAGATTTTTACTCCCA 59.783 38.462 17.64 17.64 45.03 4.37
1998 4438 6.542735 GTCATGGGAAGTAGATTTTTACTCCC 59.457 42.308 0.00 0.00 39.23 4.30
1999 4439 7.339482 AGTCATGGGAAGTAGATTTTTACTCC 58.661 38.462 0.00 0.00 32.84 3.85
2000 4440 9.315525 GTAGTCATGGGAAGTAGATTTTTACTC 57.684 37.037 0.00 0.00 32.84 2.59
2001 4441 9.047947 AGTAGTCATGGGAAGTAGATTTTTACT 57.952 33.333 0.00 0.00 35.44 2.24
2002 4442 9.315525 GAGTAGTCATGGGAAGTAGATTTTTAC 57.684 37.037 0.00 0.00 0.00 2.01
2003 4443 8.483758 GGAGTAGTCATGGGAAGTAGATTTTTA 58.516 37.037 0.00 0.00 0.00 1.52
2004 4444 7.339482 GGAGTAGTCATGGGAAGTAGATTTTT 58.661 38.462 0.00 0.00 0.00 1.94
2005 4445 6.126739 GGGAGTAGTCATGGGAAGTAGATTTT 60.127 42.308 0.00 0.00 0.00 1.82
2006 4446 5.367060 GGGAGTAGTCATGGGAAGTAGATTT 59.633 44.000 0.00 0.00 0.00 2.17
2007 4447 4.902448 GGGAGTAGTCATGGGAAGTAGATT 59.098 45.833 0.00 0.00 0.00 2.40
2008 4448 4.171044 AGGGAGTAGTCATGGGAAGTAGAT 59.829 45.833 0.00 0.00 0.00 1.98
2009 4449 3.532232 AGGGAGTAGTCATGGGAAGTAGA 59.468 47.826 0.00 0.00 0.00 2.59
2010 4450 3.892588 GAGGGAGTAGTCATGGGAAGTAG 59.107 52.174 0.00 0.00 0.00 2.57
2011 4451 3.373877 GGAGGGAGTAGTCATGGGAAGTA 60.374 52.174 0.00 0.00 0.00 2.24
2012 4452 2.627217 GGAGGGAGTAGTCATGGGAAGT 60.627 54.545 0.00 0.00 0.00 3.01
2013 4453 2.043227 GGAGGGAGTAGTCATGGGAAG 58.957 57.143 0.00 0.00 0.00 3.46
2014 4454 1.364678 TGGAGGGAGTAGTCATGGGAA 59.635 52.381 0.00 0.00 0.00 3.97
2015 4455 1.015609 TGGAGGGAGTAGTCATGGGA 58.984 55.000 0.00 0.00 0.00 4.37
2016 4456 2.109229 ATGGAGGGAGTAGTCATGGG 57.891 55.000 0.00 0.00 0.00 4.00
2017 4457 4.408921 TGTTTATGGAGGGAGTAGTCATGG 59.591 45.833 0.00 0.00 0.00 3.66
2018 4458 5.129485 AGTGTTTATGGAGGGAGTAGTCATG 59.871 44.000 0.00 0.00 0.00 3.07
2019 4459 5.281314 AGTGTTTATGGAGGGAGTAGTCAT 58.719 41.667 0.00 0.00 0.00 3.06
2020 4460 4.684724 AGTGTTTATGGAGGGAGTAGTCA 58.315 43.478 0.00 0.00 0.00 3.41
2021 4461 4.957327 AGAGTGTTTATGGAGGGAGTAGTC 59.043 45.833 0.00 0.00 0.00 2.59
2022 4462 4.949121 AGAGTGTTTATGGAGGGAGTAGT 58.051 43.478 0.00 0.00 0.00 2.73
2023 4463 5.941555 AAGAGTGTTTATGGAGGGAGTAG 57.058 43.478 0.00 0.00 0.00 2.57
2024 4464 6.183360 GCATAAGAGTGTTTATGGAGGGAGTA 60.183 42.308 7.60 0.00 40.02 2.59
2025 4465 5.396884 GCATAAGAGTGTTTATGGAGGGAGT 60.397 44.000 7.60 0.00 40.02 3.85
2026 4466 5.059833 GCATAAGAGTGTTTATGGAGGGAG 58.940 45.833 7.60 0.00 40.02 4.30
2027 4467 4.473196 TGCATAAGAGTGTTTATGGAGGGA 59.527 41.667 7.60 0.00 40.02 4.20
2028 4468 4.780815 TGCATAAGAGTGTTTATGGAGGG 58.219 43.478 7.60 0.00 40.02 4.30
2029 4469 6.375455 AGTTTGCATAAGAGTGTTTATGGAGG 59.625 38.462 7.60 0.00 40.75 4.30
2030 4470 7.335422 AGAGTTTGCATAAGAGTGTTTATGGAG 59.665 37.037 7.60 0.00 40.75 3.86
2031 4471 7.168219 AGAGTTTGCATAAGAGTGTTTATGGA 58.832 34.615 7.60 2.71 40.02 3.41
2032 4472 7.119699 TGAGAGTTTGCATAAGAGTGTTTATGG 59.880 37.037 7.60 0.00 40.02 2.74
2033 4473 8.032952 TGAGAGTTTGCATAAGAGTGTTTATG 57.967 34.615 0.00 2.26 41.70 1.90
2034 4474 8.798859 ATGAGAGTTTGCATAAGAGTGTTTAT 57.201 30.769 0.00 0.00 0.00 1.40
2035 4475 8.621532 AATGAGAGTTTGCATAAGAGTGTTTA 57.378 30.769 0.00 0.00 0.00 2.01
2036 4476 7.308830 GGAATGAGAGTTTGCATAAGAGTGTTT 60.309 37.037 0.00 0.00 0.00 2.83
2037 4477 6.150140 GGAATGAGAGTTTGCATAAGAGTGTT 59.850 38.462 0.00 0.00 0.00 3.32
2038 4478 5.645497 GGAATGAGAGTTTGCATAAGAGTGT 59.355 40.000 0.00 0.00 0.00 3.55
2039 4479 5.065731 GGGAATGAGAGTTTGCATAAGAGTG 59.934 44.000 0.00 0.00 0.00 3.51
2040 4480 5.189180 GGGAATGAGAGTTTGCATAAGAGT 58.811 41.667 0.00 0.00 0.00 3.24
2041 4481 4.578105 GGGGAATGAGAGTTTGCATAAGAG 59.422 45.833 0.00 0.00 0.00 2.85
2042 4482 4.228210 AGGGGAATGAGAGTTTGCATAAGA 59.772 41.667 0.00 0.00 0.00 2.10
2043 4483 4.337555 CAGGGGAATGAGAGTTTGCATAAG 59.662 45.833 0.00 0.00 0.00 1.73
2044 4484 4.272489 CAGGGGAATGAGAGTTTGCATAA 58.728 43.478 0.00 0.00 0.00 1.90
2045 4485 3.889815 CAGGGGAATGAGAGTTTGCATA 58.110 45.455 0.00 0.00 0.00 3.14
2046 4486 2.731572 CAGGGGAATGAGAGTTTGCAT 58.268 47.619 0.00 0.00 0.00 3.96
2047 4487 1.887956 GCAGGGGAATGAGAGTTTGCA 60.888 52.381 0.00 0.00 0.00 4.08
2048 4488 0.813821 GCAGGGGAATGAGAGTTTGC 59.186 55.000 0.00 0.00 0.00 3.68
2049 4489 1.467920 GGCAGGGGAATGAGAGTTTG 58.532 55.000 0.00 0.00 0.00 2.93
2050 4490 0.332972 GGGCAGGGGAATGAGAGTTT 59.667 55.000 0.00 0.00 0.00 2.66
2051 4491 0.846427 TGGGCAGGGGAATGAGAGTT 60.846 55.000 0.00 0.00 0.00 3.01
2052 4492 0.846427 TTGGGCAGGGGAATGAGAGT 60.846 55.000 0.00 0.00 0.00 3.24
2053 4493 0.106819 CTTGGGCAGGGGAATGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
2054 4494 1.574526 CCTTGGGCAGGGGAATGAGA 61.575 60.000 0.00 0.00 39.39 3.27
2055 4495 1.076485 CCTTGGGCAGGGGAATGAG 60.076 63.158 0.00 0.00 39.39 2.90
2056 4496 3.099171 CCTTGGGCAGGGGAATGA 58.901 61.111 0.00 0.00 39.39 2.57
2064 4504 1.098050 GATGTGCTTACCTTGGGCAG 58.902 55.000 0.00 0.00 36.62 4.85
2065 4505 0.676466 CGATGTGCTTACCTTGGGCA 60.676 55.000 0.00 0.00 0.00 5.36
2066 4506 0.676782 ACGATGTGCTTACCTTGGGC 60.677 55.000 0.00 0.00 0.00 5.36
2067 4507 1.369625 GACGATGTGCTTACCTTGGG 58.630 55.000 0.00 0.00 0.00 4.12
2068 4508 1.338674 TGGACGATGTGCTTACCTTGG 60.339 52.381 0.00 0.00 0.00 3.61
2069 4509 2.093306 TGGACGATGTGCTTACCTTG 57.907 50.000 0.00 0.00 0.00 3.61
2070 4510 2.027192 ACATGGACGATGTGCTTACCTT 60.027 45.455 1.88 0.00 44.12 3.50
2119 4559 6.806739 ACTAAAAACAACAGAAAAGCTCACAC 59.193 34.615 0.00 0.00 0.00 3.82
2141 4581 2.364324 AGCGTTCAGAAACAGACCACTA 59.636 45.455 0.00 0.00 34.93 2.74
2351 4825 3.753272 AGTTGGTTGCACTGTATAAGCAG 59.247 43.478 0.00 0.00 39.72 4.24
2354 4828 6.258727 CCTATGAGTTGGTTGCACTGTATAAG 59.741 42.308 0.00 0.00 0.00 1.73
2355 4829 6.112734 CCTATGAGTTGGTTGCACTGTATAA 58.887 40.000 0.00 0.00 0.00 0.98
2391 4865 6.974965 AGCACCTTACAATTTCTCAAAAGAG 58.025 36.000 0.00 0.00 31.75 2.85
2542 5018 5.701290 GCATTTACAACTGAACACTCCTACT 59.299 40.000 0.00 0.00 0.00 2.57
2543 5019 5.701290 AGCATTTACAACTGAACACTCCTAC 59.299 40.000 0.00 0.00 0.00 3.18
2544 5020 5.865085 AGCATTTACAACTGAACACTCCTA 58.135 37.500 0.00 0.00 0.00 2.94
2554 5030 4.764679 TTGGTGCTAGCATTTACAACTG 57.235 40.909 22.51 0.00 0.00 3.16
2563 5042 4.342092 AGAAACAAAGTTTGGTGCTAGCAT 59.658 37.500 22.51 0.00 33.32 3.79
2599 5153 4.773323 AGCCACAAAAGCTTTGTATCTC 57.227 40.909 13.54 1.25 37.24 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.