Multiple sequence alignment - TraesCS2D01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G412000 chr2D 100.000 3014 0 0 1 3014 526528028 526525015 0.000000e+00 5566
1 TraesCS2D01G412000 chr2A 97.374 1333 31 2 889 2220 671712748 671711419 0.000000e+00 2265
2 TraesCS2D01G412000 chr2A 93.447 702 26 7 2218 2910 671711393 671710703 0.000000e+00 1024
3 TraesCS2D01G412000 chr2B 95.824 1413 37 2 809 2220 622923017 622921626 0.000000e+00 2263
4 TraesCS2D01G412000 chr2B 91.537 709 38 9 2218 2910 622921600 622920898 0.000000e+00 957
5 TraesCS2D01G412000 chr2B 95.413 109 3 1 2908 3014 769078169 769078061 3.990000e-39 172
6 TraesCS2D01G412000 chr6A 87.279 849 108 0 1164 2012 464690795 464689947 0.000000e+00 970
7 TraesCS2D01G412000 chr6A 80.627 351 65 1 1236 1586 12367546 12367199 4.950000e-68 268
8 TraesCS2D01G412000 chr6D 86.941 850 109 2 1164 2012 325821249 325820401 0.000000e+00 953
9 TraesCS2D01G412000 chr6D 87.761 719 85 3 1 719 141520094 141520809 0.000000e+00 837
10 TraesCS2D01G412000 chr6B 86.926 849 111 0 1164 2012 496986735 496987583 0.000000e+00 953
11 TraesCS2D01G412000 chr4B 88.734 719 78 3 1 719 190357099 190357814 0.000000e+00 876
12 TraesCS2D01G412000 chr1B 88.527 706 75 6 10 713 223760731 223760030 0.000000e+00 850
13 TraesCS2D01G412000 chr1B 87.639 720 83 4 1 719 470011044 470011758 0.000000e+00 832
14 TraesCS2D01G412000 chr1B 95.327 107 5 0 2908 3014 626100390 626100496 1.440000e-38 171
15 TraesCS2D01G412000 chr7D 87.775 728 83 3 1 722 383205563 383204836 0.000000e+00 846
16 TraesCS2D01G412000 chr7B 87.707 724 85 4 1 722 368661063 368660342 0.000000e+00 841
17 TraesCS2D01G412000 chr4A 87.466 726 84 7 6 729 284019865 284020585 0.000000e+00 830
18 TraesCS2D01G412000 chr1A 87.639 720 82 6 9 724 120982107 120981391 0.000000e+00 830
19 TraesCS2D01G412000 chr3A 87.483 719 89 1 1 719 372003388 372002671 0.000000e+00 828
20 TraesCS2D01G412000 chr3A 80.810 568 82 9 1177 1734 648104233 648104783 1.290000e-113 420
21 TraesCS2D01G412000 chr5D 81.128 461 67 12 1151 1595 547059981 547060437 4.780000e-93 351
22 TraesCS2D01G412000 chr5D 96.262 107 4 0 2908 3014 289423545 289423651 3.090000e-40 176
23 TraesCS2D01G412000 chr5D 96.262 107 4 0 2908 3014 322370166 322370060 3.090000e-40 176
24 TraesCS2D01G412000 chr5B 82.169 415 63 8 1175 1578 690230581 690230995 2.220000e-91 346
25 TraesCS2D01G412000 chr7A 96.262 107 4 0 2908 3014 580506702 580506808 3.090000e-40 176
26 TraesCS2D01G412000 chr7A 95.370 108 5 0 2907 3014 732053319 732053426 3.990000e-39 172
27 TraesCS2D01G412000 chr1D 96.262 107 3 1 2908 3014 289532272 289532167 1.110000e-39 174
28 TraesCS2D01G412000 chr1D 96.262 107 3 1 2908 3014 289597488 289597383 1.110000e-39 174
29 TraesCS2D01G412000 chr3B 95.370 108 5 0 2907 3014 428703824 428703717 3.990000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G412000 chr2D 526525015 526528028 3013 True 5566.0 5566 100.0000 1 3014 1 chr2D.!!$R1 3013
1 TraesCS2D01G412000 chr2A 671710703 671712748 2045 True 1644.5 2265 95.4105 889 2910 2 chr2A.!!$R1 2021
2 TraesCS2D01G412000 chr2B 622920898 622923017 2119 True 1610.0 2263 93.6805 809 2910 2 chr2B.!!$R2 2101
3 TraesCS2D01G412000 chr6A 464689947 464690795 848 True 970.0 970 87.2790 1164 2012 1 chr6A.!!$R2 848
4 TraesCS2D01G412000 chr6D 325820401 325821249 848 True 953.0 953 86.9410 1164 2012 1 chr6D.!!$R1 848
5 TraesCS2D01G412000 chr6D 141520094 141520809 715 False 837.0 837 87.7610 1 719 1 chr6D.!!$F1 718
6 TraesCS2D01G412000 chr6B 496986735 496987583 848 False 953.0 953 86.9260 1164 2012 1 chr6B.!!$F1 848
7 TraesCS2D01G412000 chr4B 190357099 190357814 715 False 876.0 876 88.7340 1 719 1 chr4B.!!$F1 718
8 TraesCS2D01G412000 chr1B 223760030 223760731 701 True 850.0 850 88.5270 10 713 1 chr1B.!!$R1 703
9 TraesCS2D01G412000 chr1B 470011044 470011758 714 False 832.0 832 87.6390 1 719 1 chr1B.!!$F1 718
10 TraesCS2D01G412000 chr7D 383204836 383205563 727 True 846.0 846 87.7750 1 722 1 chr7D.!!$R1 721
11 TraesCS2D01G412000 chr7B 368660342 368661063 721 True 841.0 841 87.7070 1 722 1 chr7B.!!$R1 721
12 TraesCS2D01G412000 chr4A 284019865 284020585 720 False 830.0 830 87.4660 6 729 1 chr4A.!!$F1 723
13 TraesCS2D01G412000 chr1A 120981391 120982107 716 True 830.0 830 87.6390 9 724 1 chr1A.!!$R1 715
14 TraesCS2D01G412000 chr3A 372002671 372003388 717 True 828.0 828 87.4830 1 719 1 chr3A.!!$R1 718
15 TraesCS2D01G412000 chr3A 648104233 648104783 550 False 420.0 420 80.8100 1177 1734 1 chr3A.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 791 0.385029 TGCTCGCAAATGCAAGTTGT 59.615 45.0 13.3 0.0 45.01 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2522 0.107165 ATTGGAGCTTACTTCCCGCC 60.107 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.662781 TTCTTTATCCATTAACCAATCTCGAG 57.337 34.615 5.93 5.93 0.00 4.04
82 83 7.649533 TCCATTAACCAATCTCGAGTTAGTA 57.350 36.000 13.13 0.00 0.00 1.82
105 106 3.499918 CCCTCGGCATTATTGATCTTGAC 59.500 47.826 0.00 0.00 0.00 3.18
159 160 8.997301 ATATAGGGTCCTTTCCATTTAGAGAT 57.003 34.615 0.00 0.00 0.00 2.75
160 161 5.379706 AGGGTCCTTTCCATTTAGAGATG 57.620 43.478 0.00 0.00 0.00 2.90
185 191 8.474025 TGAGTTTTCCTGCAAAGAATCTAAAAA 58.526 29.630 0.01 0.00 0.00 1.94
227 233 5.564550 ACATGCTCACCTACTTTGAATTCT 58.435 37.500 7.05 0.00 0.00 2.40
228 234 5.413833 ACATGCTCACCTACTTTGAATTCTG 59.586 40.000 7.05 0.00 0.00 3.02
305 314 6.069323 TGGTATTTTCATAGGCTTGGGTTCTA 60.069 38.462 0.00 0.00 0.00 2.10
323 332 6.446318 GGTTCTACATTCATCTAGAGAGCTG 58.554 44.000 0.00 0.00 0.00 4.24
368 377 7.599621 TCACCAGCAAGTTTGAAATCATAATTG 59.400 33.333 8.88 8.88 36.47 2.32
429 438 7.014615 ACTCAAGAGGTAAATGACATGCTTTTT 59.985 33.333 1.73 0.00 0.00 1.94
525 534 9.971922 CATCAAGTTTCTTAGACCAATTCTTTT 57.028 29.630 0.00 0.00 35.55 2.27
596 608 5.632347 GCTCAATTCAATTTGACCACAAGAG 59.368 40.000 0.00 3.11 37.32 2.85
626 638 8.045507 GGATGATAAGGAGATGCAATTCTATGA 58.954 37.037 0.00 0.00 0.00 2.15
657 669 9.855361 CATCATATTTAGCAAGAAGTTTACGAG 57.145 33.333 0.00 0.00 0.00 4.18
665 677 4.434330 GCAAGAAGTTTACGAGAATCACCG 60.434 45.833 0.00 0.00 33.17 4.94
722 734 8.401955 AATATTTAGGGACTTCAAACCTAGGA 57.598 34.615 17.98 0.00 41.75 2.94
724 736 6.713731 TTTAGGGACTTCAAACCTAGGAAT 57.286 37.500 17.98 0.02 41.75 3.01
729 741 7.709601 AGGGACTTCAAACCTAGGAATAAAAT 58.290 34.615 17.98 0.00 27.25 1.82
730 742 7.615757 AGGGACTTCAAACCTAGGAATAAAATG 59.384 37.037 17.98 3.55 27.25 2.32
731 743 7.396339 GGGACTTCAAACCTAGGAATAAAATGT 59.604 37.037 17.98 4.37 0.00 2.71
732 744 8.244113 GGACTTCAAACCTAGGAATAAAATGTG 58.756 37.037 17.98 0.00 0.00 3.21
733 745 8.934023 ACTTCAAACCTAGGAATAAAATGTGA 57.066 30.769 17.98 0.00 0.00 3.58
734 746 9.362151 ACTTCAAACCTAGGAATAAAATGTGAA 57.638 29.630 17.98 7.23 0.00 3.18
735 747 9.626045 CTTCAAACCTAGGAATAAAATGTGAAC 57.374 33.333 17.98 0.00 0.00 3.18
736 748 8.117813 TCAAACCTAGGAATAAAATGTGAACC 57.882 34.615 17.98 0.00 0.00 3.62
737 749 7.726291 TCAAACCTAGGAATAAAATGTGAACCA 59.274 33.333 17.98 0.00 0.00 3.67
738 750 8.531146 CAAACCTAGGAATAAAATGTGAACCAT 58.469 33.333 17.98 0.00 34.36 3.55
739 751 7.881775 ACCTAGGAATAAAATGTGAACCATC 57.118 36.000 17.98 0.00 31.75 3.51
740 752 7.410174 ACCTAGGAATAAAATGTGAACCATCA 58.590 34.615 17.98 0.00 31.75 3.07
741 753 8.061304 ACCTAGGAATAAAATGTGAACCATCAT 58.939 33.333 17.98 0.00 38.01 2.45
742 754 8.571336 CCTAGGAATAAAATGTGAACCATCATC 58.429 37.037 1.05 0.00 38.01 2.92
743 755 7.959658 AGGAATAAAATGTGAACCATCATCA 57.040 32.000 0.00 0.00 38.01 3.07
744 756 8.543293 AGGAATAAAATGTGAACCATCATCAT 57.457 30.769 0.00 0.00 38.01 2.45
745 757 9.645128 AGGAATAAAATGTGAACCATCATCATA 57.355 29.630 0.00 0.00 38.01 2.15
749 761 7.806409 AAAATGTGAACCATCATCATATCGA 57.194 32.000 0.00 0.00 38.01 3.59
750 762 7.991084 AAATGTGAACCATCATCATATCGAT 57.009 32.000 2.16 2.16 38.01 3.59
751 763 7.991084 AATGTGAACCATCATCATATCGATT 57.009 32.000 1.71 0.00 38.01 3.34
752 764 7.991084 ATGTGAACCATCATCATATCGATTT 57.009 32.000 1.71 0.00 38.01 2.17
753 765 7.806409 TGTGAACCATCATCATATCGATTTT 57.194 32.000 1.71 0.00 38.01 1.82
754 766 7.641760 TGTGAACCATCATCATATCGATTTTG 58.358 34.615 1.71 2.20 38.01 2.44
755 767 7.282901 TGTGAACCATCATCATATCGATTTTGT 59.717 33.333 1.71 0.00 38.01 2.83
756 768 8.773645 GTGAACCATCATCATATCGATTTTGTA 58.226 33.333 1.71 0.00 38.01 2.41
757 769 9.506018 TGAACCATCATCATATCGATTTTGTAT 57.494 29.630 1.71 0.00 29.21 2.29
758 770 9.979270 GAACCATCATCATATCGATTTTGTATC 57.021 33.333 1.71 0.00 29.21 2.24
759 771 9.730705 AACCATCATCATATCGATTTTGTATCT 57.269 29.630 1.71 0.00 29.21 1.98
760 772 9.730705 ACCATCATCATATCGATTTTGTATCTT 57.269 29.630 1.71 0.00 29.21 2.40
761 773 9.983804 CCATCATCATATCGATTTTGTATCTTG 57.016 33.333 1.71 0.06 29.21 3.02
762 774 9.486857 CATCATCATATCGATTTTGTATCTTGC 57.513 33.333 1.71 0.00 29.21 4.01
763 775 8.837788 TCATCATATCGATTTTGTATCTTGCT 57.162 30.769 1.71 0.00 29.21 3.91
764 776 8.929746 TCATCATATCGATTTTGTATCTTGCTC 58.070 33.333 1.71 0.00 29.21 4.26
765 777 7.338440 TCATATCGATTTTGTATCTTGCTCG 57.662 36.000 1.71 0.00 0.00 5.03
766 778 3.925688 TCGATTTTGTATCTTGCTCGC 57.074 42.857 0.00 0.00 0.00 5.03
767 779 3.258228 TCGATTTTGTATCTTGCTCGCA 58.742 40.909 0.00 0.00 0.00 5.10
768 780 3.682377 TCGATTTTGTATCTTGCTCGCAA 59.318 39.130 4.09 4.09 0.00 4.85
769 781 4.153296 TCGATTTTGTATCTTGCTCGCAAA 59.847 37.500 5.77 0.00 35.33 3.68
770 782 5.030295 CGATTTTGTATCTTGCTCGCAAAT 58.970 37.500 5.77 5.45 35.33 2.32
771 783 5.052829 CGATTTTGTATCTTGCTCGCAAATG 60.053 40.000 5.77 0.00 35.33 2.32
772 784 2.830772 TGTATCTTGCTCGCAAATGC 57.169 45.000 5.77 6.80 35.33 3.56
773 785 2.083002 TGTATCTTGCTCGCAAATGCA 58.917 42.857 5.77 8.89 42.21 3.96
774 786 2.487372 TGTATCTTGCTCGCAAATGCAA 59.513 40.909 5.77 0.00 45.40 4.08
777 789 3.963676 TTGCTCGCAAATGCAAGTT 57.036 42.105 6.18 0.00 43.17 2.66
778 790 1.489574 TTGCTCGCAAATGCAAGTTG 58.510 45.000 6.18 8.71 46.16 3.16
779 791 0.385029 TGCTCGCAAATGCAAGTTGT 59.615 45.000 13.30 0.00 45.01 3.32
780 792 1.606189 TGCTCGCAAATGCAAGTTGTA 59.394 42.857 13.30 0.00 45.01 2.41
781 793 1.978782 GCTCGCAAATGCAAGTTGTAC 59.021 47.619 13.30 0.00 45.01 2.90
782 794 2.584791 CTCGCAAATGCAAGTTGTACC 58.415 47.619 13.30 0.00 45.01 3.34
783 795 1.069568 TCGCAAATGCAAGTTGTACCG 60.070 47.619 13.30 9.39 45.01 4.02
784 796 1.334599 CGCAAATGCAAGTTGTACCGT 60.335 47.619 13.30 0.00 45.01 4.83
785 797 2.050691 GCAAATGCAAGTTGTACCGTG 58.949 47.619 13.30 0.84 45.01 4.94
786 798 2.542824 GCAAATGCAAGTTGTACCGTGT 60.543 45.455 13.30 0.00 45.01 4.49
787 799 3.701241 CAAATGCAAGTTGTACCGTGTT 58.299 40.909 4.48 0.00 37.10 3.32
788 800 4.790123 GCAAATGCAAGTTGTACCGTGTTA 60.790 41.667 13.30 0.00 45.01 2.41
789 801 4.477302 AATGCAAGTTGTACCGTGTTAC 57.523 40.909 4.48 0.00 0.00 2.50
790 802 2.902523 TGCAAGTTGTACCGTGTTACA 58.097 42.857 4.48 0.00 0.00 2.41
791 803 3.268330 TGCAAGTTGTACCGTGTTACAA 58.732 40.909 4.48 0.00 34.23 2.41
792 804 3.688185 TGCAAGTTGTACCGTGTTACAAA 59.312 39.130 4.48 0.00 37.84 2.83
793 805 4.155462 TGCAAGTTGTACCGTGTTACAAAA 59.845 37.500 4.48 0.00 37.84 2.44
794 806 5.094134 GCAAGTTGTACCGTGTTACAAAAA 58.906 37.500 4.48 0.00 37.84 1.94
795 807 5.744819 GCAAGTTGTACCGTGTTACAAAAAT 59.255 36.000 4.48 0.00 37.84 1.82
796 808 6.253942 GCAAGTTGTACCGTGTTACAAAAATT 59.746 34.615 4.48 0.00 37.84 1.82
797 809 7.605259 CAAGTTGTACCGTGTTACAAAAATTG 58.395 34.615 0.00 6.01 37.84 2.32
798 810 5.744819 AGTTGTACCGTGTTACAAAAATTGC 59.255 36.000 3.79 0.00 37.84 3.56
799 811 4.280461 TGTACCGTGTTACAAAAATTGCG 58.720 39.130 0.00 0.00 0.00 4.85
800 812 3.694535 ACCGTGTTACAAAAATTGCGA 57.305 38.095 0.00 0.00 0.00 5.10
801 813 3.364946 ACCGTGTTACAAAAATTGCGAC 58.635 40.909 0.00 0.00 0.00 5.19
802 814 3.181499 ACCGTGTTACAAAAATTGCGACA 60.181 39.130 0.00 0.00 0.00 4.35
803 815 3.791887 CCGTGTTACAAAAATTGCGACAA 59.208 39.130 0.00 0.00 32.81 3.18
804 816 4.265556 CCGTGTTACAAAAATTGCGACAAA 59.734 37.500 0.00 0.00 32.81 2.83
805 817 5.051374 CCGTGTTACAAAAATTGCGACAAAT 60.051 36.000 0.00 0.00 32.81 2.32
806 818 6.406820 CGTGTTACAAAAATTGCGACAAATT 58.593 32.000 0.00 0.00 32.81 1.82
807 819 6.897138 CGTGTTACAAAAATTGCGACAAATTT 59.103 30.769 0.00 0.00 40.60 1.82
822 834 5.059404 ACAAATTTAGTTGATGCCTTCGG 57.941 39.130 0.00 0.00 32.59 4.30
825 837 2.024176 TTAGTTGATGCCTTCGGAGC 57.976 50.000 0.00 0.00 0.00 4.70
827 839 2.125147 TTGATGCCTTCGGAGCGG 60.125 61.111 0.00 0.00 0.00 5.52
843 855 0.732538 GCGGCGAACCCTGAATTTTG 60.733 55.000 12.98 0.00 0.00 2.44
845 857 0.603065 GGCGAACCCTGAATTTTGCT 59.397 50.000 0.00 0.00 33.29 3.91
846 858 1.000843 GGCGAACCCTGAATTTTGCTT 59.999 47.619 0.00 0.00 33.29 3.91
853 865 2.353406 CCCTGAATTTTGCTTGCTCCAG 60.353 50.000 0.00 0.00 0.00 3.86
948 960 1.394151 CTCCACCTCCTCCCTTCCT 59.606 63.158 0.00 0.00 0.00 3.36
968 981 0.872021 GTAGGCATTCCGTCGAGCAG 60.872 60.000 0.00 0.00 37.47 4.24
1141 1154 4.916293 GCATCTCCGCCGCATCCA 62.916 66.667 0.00 0.00 0.00 3.41
1142 1155 2.969238 CATCTCCGCCGCATCCAC 60.969 66.667 0.00 0.00 0.00 4.02
1143 1156 4.592192 ATCTCCGCCGCATCCACG 62.592 66.667 0.00 0.00 0.00 4.94
1545 1587 3.717294 AAGGACGCCCGCCTCATT 61.717 61.111 4.60 0.00 33.76 2.57
2168 2210 5.889289 AGGAGAGTAATACTGACTGAGGTTC 59.111 44.000 0.00 0.00 0.00 3.62
2173 2215 6.879400 AGTAATACTGACTGAGGTTCCATTC 58.121 40.000 0.00 0.00 0.00 2.67
2174 2216 5.762179 AATACTGACTGAGGTTCCATTCA 57.238 39.130 0.00 0.00 0.00 2.57
2325 2395 4.524802 TCCTATGGGATTCAGTTGCAAT 57.475 40.909 0.59 0.00 36.57 3.56
2335 2405 7.043565 GGGATTCAGTTGCAATGATTGTAAAT 58.956 34.615 10.20 6.69 37.01 1.40
2344 2414 7.583860 TGCAATGATTGTAAATTGATGTGTG 57.416 32.000 7.05 0.00 36.13 3.82
2400 2471 8.271458 TGATGTAATTCATGGGAAAGCTAGTAA 58.729 33.333 0.00 0.00 36.83 2.24
2479 2559 5.218885 TCCAATTAGCAATGTTGTTTCACG 58.781 37.500 0.00 0.00 0.00 4.35
2605 2685 1.901591 ACACATTCCTGGCTGTCAAG 58.098 50.000 0.00 0.00 0.00 3.02
2665 2745 4.483950 CCATCCATCACTAGGACCTCTTA 58.516 47.826 0.00 0.00 38.13 2.10
2675 2755 6.012683 TCACTAGGACCTCTTACAGTCTTACT 60.013 42.308 0.00 0.00 33.39 2.24
2748 2828 7.195646 ACATGTTTAGTGTCAACATTTCTGTG 58.804 34.615 0.00 0.00 41.19 3.66
2761 2841 6.084326 ACATTTCTGTGGAAACAATGGTAC 57.916 37.500 0.00 0.00 46.06 3.34
2911 2997 9.974980 TTCCAATTCCAATTAAAACAGTTACTC 57.025 29.630 0.00 0.00 0.00 2.59
2912 2998 8.581578 TCCAATTCCAATTAAAACAGTTACTCC 58.418 33.333 0.00 0.00 0.00 3.85
2913 2999 7.817478 CCAATTCCAATTAAAACAGTTACTCCC 59.183 37.037 0.00 0.00 0.00 4.30
2914 3000 8.585018 CAATTCCAATTAAAACAGTTACTCCCT 58.415 33.333 0.00 0.00 0.00 4.20
2915 3001 7.754851 TTCCAATTAAAACAGTTACTCCCTC 57.245 36.000 0.00 0.00 0.00 4.30
2916 3002 6.243148 TCCAATTAAAACAGTTACTCCCTCC 58.757 40.000 0.00 0.00 0.00 4.30
2917 3003 5.123344 CCAATTAAAACAGTTACTCCCTCCG 59.877 44.000 0.00 0.00 0.00 4.63
2918 3004 4.961438 TTAAAACAGTTACTCCCTCCGT 57.039 40.909 0.00 0.00 0.00 4.69
2919 3005 3.851458 AAAACAGTTACTCCCTCCGTT 57.149 42.857 0.00 0.00 0.00 4.44
2920 3006 3.397849 AAACAGTTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
2921 3007 1.264295 ACAGTTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2922 3008 1.203149 ACAGTTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
2923 3009 2.042162 ACAGTTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
2924 3010 3.094572 CAGTTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
2925 3011 3.512724 CAGTTACTCCCTCCGTTCCTAAA 59.487 47.826 0.00 0.00 0.00 1.85
2926 3012 4.161754 CAGTTACTCCCTCCGTTCCTAAAT 59.838 45.833 0.00 0.00 0.00 1.40
2927 3013 5.361857 CAGTTACTCCCTCCGTTCCTAAATA 59.638 44.000 0.00 0.00 0.00 1.40
2928 3014 6.041751 CAGTTACTCCCTCCGTTCCTAAATAT 59.958 42.308 0.00 0.00 0.00 1.28
2929 3015 7.232127 CAGTTACTCCCTCCGTTCCTAAATATA 59.768 40.741 0.00 0.00 0.00 0.86
2930 3016 7.786464 AGTTACTCCCTCCGTTCCTAAATATAA 59.214 37.037 0.00 0.00 0.00 0.98
2931 3017 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2932 3018 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2933 3019 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2934 3020 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2935 3021 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2936 3022 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2937 3023 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2938 3024 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2964 3050 8.041143 AGAGATTCCACTATAGAGACTACAGT 57.959 38.462 6.78 0.00 0.00 3.55
2965 3051 8.154856 AGAGATTCCACTATAGAGACTACAGTC 58.845 40.741 6.78 0.91 45.08 3.51
2980 3066 7.453980 GACTACAGTCGGATCTATATAGACG 57.546 44.000 14.71 14.17 36.97 4.18
2981 3067 5.811613 ACTACAGTCGGATCTATATAGACGC 59.188 44.000 14.71 9.75 36.97 5.19
2982 3068 3.940221 ACAGTCGGATCTATATAGACGCC 59.060 47.826 14.71 16.52 36.97 5.68
2983 3069 4.193090 CAGTCGGATCTATATAGACGCCT 58.807 47.826 22.02 13.26 36.97 5.52
2984 3070 4.636648 CAGTCGGATCTATATAGACGCCTT 59.363 45.833 22.02 7.08 36.97 4.35
2985 3071 5.124138 CAGTCGGATCTATATAGACGCCTTT 59.876 44.000 22.02 6.49 36.97 3.11
2986 3072 5.711036 AGTCGGATCTATATAGACGCCTTTT 59.289 40.000 22.02 5.91 36.97 2.27
2987 3073 6.883217 AGTCGGATCTATATAGACGCCTTTTA 59.117 38.462 22.02 9.44 36.97 1.52
2988 3074 7.066043 AGTCGGATCTATATAGACGCCTTTTAG 59.934 40.741 22.02 12.06 36.97 1.85
2989 3075 7.065563 GTCGGATCTATATAGACGCCTTTTAGA 59.934 40.741 22.02 13.49 34.72 2.10
2990 3076 7.280428 TCGGATCTATATAGACGCCTTTTAGAG 59.720 40.741 22.02 11.11 34.72 2.43
2991 3077 7.066043 CGGATCTATATAGACGCCTTTTAGAGT 59.934 40.741 22.02 3.58 34.72 3.24
2992 3078 9.393512 GGATCTATATAGACGCCTTTTAGAGTA 57.606 37.037 14.71 0.00 34.72 2.59
2998 3084 7.836479 ATAGACGCCTTTTAGAGTATAGGTT 57.164 36.000 0.00 0.00 0.00 3.50
2999 3085 6.146601 AGACGCCTTTTAGAGTATAGGTTC 57.853 41.667 0.00 0.00 0.00 3.62
3000 3086 5.655532 AGACGCCTTTTAGAGTATAGGTTCA 59.344 40.000 0.00 0.00 0.00 3.18
3001 3087 5.658468 ACGCCTTTTAGAGTATAGGTTCAC 58.342 41.667 0.00 0.00 0.00 3.18
3002 3088 5.421374 ACGCCTTTTAGAGTATAGGTTCACT 59.579 40.000 0.00 0.00 0.00 3.41
3003 3089 5.978322 CGCCTTTTAGAGTATAGGTTCACTC 59.022 44.000 0.00 0.00 41.25 3.51
3004 3090 6.405508 CGCCTTTTAGAGTATAGGTTCACTCA 60.406 42.308 4.70 0.00 42.99 3.41
3005 3091 7.501844 GCCTTTTAGAGTATAGGTTCACTCAT 58.498 38.462 4.70 0.00 42.99 2.90
3006 3092 7.988028 GCCTTTTAGAGTATAGGTTCACTCATT 59.012 37.037 4.70 0.00 42.99 2.57
3007 3093 9.892130 CCTTTTAGAGTATAGGTTCACTCATTT 57.108 33.333 4.70 0.00 42.99 2.32
3010 3096 8.718102 TTAGAGTATAGGTTCACTCATTTTGC 57.282 34.615 4.70 0.00 42.99 3.68
3011 3097 6.951971 AGAGTATAGGTTCACTCATTTTGCT 58.048 36.000 4.70 0.00 42.99 3.91
3012 3098 7.044798 AGAGTATAGGTTCACTCATTTTGCTC 58.955 38.462 4.70 0.00 42.99 4.26
3013 3099 6.116126 AGTATAGGTTCACTCATTTTGCTCC 58.884 40.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.952460 TCAATAATGCCGAGGGTACTAAC 58.048 43.478 0.00 0.00 0.00 2.34
82 83 3.136443 TCAAGATCAATAATGCCGAGGGT 59.864 43.478 0.00 0.00 0.00 4.34
159 160 7.581213 TTTAGATTCTTTGCAGGAAAACTCA 57.419 32.000 7.98 2.09 0.00 3.41
160 161 8.755941 GTTTTTAGATTCTTTGCAGGAAAACTC 58.244 33.333 7.98 3.07 33.83 3.01
185 191 7.717568 AGCATGTTCTATTATACAACTCTCGT 58.282 34.615 0.00 0.00 0.00 4.18
227 233 7.935755 TGGCATGATAAAAGAATTCAAAAACCA 59.064 29.630 8.44 0.00 0.00 3.67
228 234 8.321650 TGGCATGATAAAAGAATTCAAAAACC 57.678 30.769 8.44 0.00 0.00 3.27
283 292 6.964464 TGTAGAACCCAAGCCTATGAAAATA 58.036 36.000 0.00 0.00 0.00 1.40
293 302 3.891049 AGATGAATGTAGAACCCAAGCC 58.109 45.455 0.00 0.00 0.00 4.35
323 332 8.131731 GCTGGTGAAAAGAGGTTATTTGATATC 58.868 37.037 0.00 0.00 0.00 1.63
368 377 6.793349 AGCATATTGAGCAATCAAAGAACTC 58.207 36.000 0.00 0.00 32.94 3.01
525 534 8.780846 TTGCAAAAGACCGTTAATAGATCTAA 57.219 30.769 6.52 0.00 0.00 2.10
576 586 6.239120 CCTCACTCTTGTGGTCAAATTGAATT 60.239 38.462 0.00 0.00 43.94 2.17
583 595 3.390967 TCATCCTCACTCTTGTGGTCAAA 59.609 43.478 0.00 0.00 43.94 2.69
596 608 4.613925 TGCATCTCCTTATCATCCTCAC 57.386 45.455 0.00 0.00 0.00 3.51
702 714 7.817910 TTATTCCTAGGTTTGAAGTCCCTAA 57.182 36.000 9.08 0.00 30.69 2.69
711 723 7.726291 TGGTTCACATTTTATTCCTAGGTTTGA 59.274 33.333 9.08 0.00 0.00 2.69
719 731 7.959658 TGATGATGGTTCACATTTTATTCCT 57.040 32.000 0.00 0.00 40.72 3.36
724 736 8.900983 TCGATATGATGATGGTTCACATTTTA 57.099 30.769 0.00 0.00 40.72 1.52
729 741 7.282901 ACAAAATCGATATGATGATGGTTCACA 59.717 33.333 15.72 0.00 37.39 3.58
730 742 7.642669 ACAAAATCGATATGATGATGGTTCAC 58.357 34.615 15.72 0.00 37.39 3.18
731 743 7.806409 ACAAAATCGATATGATGATGGTTCA 57.194 32.000 15.72 0.00 37.39 3.18
732 744 9.979270 GATACAAAATCGATATGATGATGGTTC 57.021 33.333 15.72 0.55 37.39 3.62
733 745 9.730705 AGATACAAAATCGATATGATGATGGTT 57.269 29.630 15.72 0.00 37.39 3.67
734 746 9.730705 AAGATACAAAATCGATATGATGATGGT 57.269 29.630 15.72 1.17 37.39 3.55
735 747 9.983804 CAAGATACAAAATCGATATGATGATGG 57.016 33.333 15.72 1.22 37.39 3.51
736 748 9.486857 GCAAGATACAAAATCGATATGATGATG 57.513 33.333 15.72 9.61 37.39 3.07
737 749 9.445878 AGCAAGATACAAAATCGATATGATGAT 57.554 29.630 15.72 7.51 37.39 2.45
738 750 8.837788 AGCAAGATACAAAATCGATATGATGA 57.162 30.769 15.72 3.84 37.39 2.92
739 751 7.896782 CGAGCAAGATACAAAATCGATATGATG 59.103 37.037 15.72 7.80 37.39 3.07
740 752 7.412346 GCGAGCAAGATACAAAATCGATATGAT 60.412 37.037 15.72 6.85 39.67 2.45
741 753 6.128822 GCGAGCAAGATACAAAATCGATATGA 60.129 38.462 15.72 3.08 0.00 2.15
742 754 6.011879 GCGAGCAAGATACAAAATCGATATG 58.988 40.000 0.00 3.81 0.00 1.78
743 755 5.696270 TGCGAGCAAGATACAAAATCGATAT 59.304 36.000 0.00 0.00 0.00 1.63
744 756 5.047188 TGCGAGCAAGATACAAAATCGATA 58.953 37.500 0.00 0.00 0.00 2.92
745 757 3.871006 TGCGAGCAAGATACAAAATCGAT 59.129 39.130 0.00 0.00 0.00 3.59
746 758 3.258228 TGCGAGCAAGATACAAAATCGA 58.742 40.909 0.00 0.00 0.00 3.59
747 759 3.656651 TGCGAGCAAGATACAAAATCG 57.343 42.857 0.00 0.00 0.00 3.34
748 760 5.276067 GCATTTGCGAGCAAGATACAAAATC 60.276 40.000 10.52 0.00 37.24 2.17
749 761 4.563976 GCATTTGCGAGCAAGATACAAAAT 59.436 37.500 10.52 0.00 37.24 1.82
750 762 3.919804 GCATTTGCGAGCAAGATACAAAA 59.080 39.130 10.52 0.00 37.24 2.44
751 763 3.057666 TGCATTTGCGAGCAAGATACAAA 60.058 39.130 10.52 0.00 45.83 2.83
752 764 2.487372 TGCATTTGCGAGCAAGATACAA 59.513 40.909 10.52 0.00 45.83 2.41
753 765 2.083002 TGCATTTGCGAGCAAGATACA 58.917 42.857 10.52 5.85 45.83 2.29
754 766 2.830772 TGCATTTGCGAGCAAGATAC 57.169 45.000 10.52 3.51 45.83 2.24
763 775 1.069568 CGGTACAACTTGCATTTGCGA 60.070 47.619 8.18 0.00 45.83 5.10
764 776 1.326576 CGGTACAACTTGCATTTGCG 58.673 50.000 8.18 1.90 45.83 4.85
765 777 2.050691 CACGGTACAACTTGCATTTGC 58.949 47.619 8.18 0.00 42.50 3.68
766 778 3.347958 ACACGGTACAACTTGCATTTG 57.652 42.857 6.96 6.96 0.00 2.32
767 779 4.335874 TGTAACACGGTACAACTTGCATTT 59.664 37.500 0.00 0.00 31.03 2.32
768 780 3.878103 TGTAACACGGTACAACTTGCATT 59.122 39.130 0.00 0.00 31.03 3.56
769 781 3.468770 TGTAACACGGTACAACTTGCAT 58.531 40.909 0.00 0.00 31.03 3.96
770 782 2.902523 TGTAACACGGTACAACTTGCA 58.097 42.857 0.00 0.00 31.03 4.08
771 783 3.948196 TTGTAACACGGTACAACTTGC 57.052 42.857 3.56 0.00 38.70 4.01
772 784 7.605259 CAATTTTTGTAACACGGTACAACTTG 58.395 34.615 7.17 8.01 42.27 3.16
773 785 6.253942 GCAATTTTTGTAACACGGTACAACTT 59.746 34.615 7.17 0.21 42.27 2.66
774 786 5.744819 GCAATTTTTGTAACACGGTACAACT 59.255 36.000 7.17 0.00 42.27 3.16
775 787 5.330939 CGCAATTTTTGTAACACGGTACAAC 60.331 40.000 7.17 0.00 42.27 3.32
776 788 4.733887 CGCAATTTTTGTAACACGGTACAA 59.266 37.500 3.56 3.56 41.18 2.41
777 789 4.034858 TCGCAATTTTTGTAACACGGTACA 59.965 37.500 0.00 0.00 32.11 2.90
778 790 4.376570 GTCGCAATTTTTGTAACACGGTAC 59.623 41.667 0.00 0.00 0.00 3.34
779 791 4.034858 TGTCGCAATTTTTGTAACACGGTA 59.965 37.500 0.00 0.00 0.00 4.02
780 792 3.181499 TGTCGCAATTTTTGTAACACGGT 60.181 39.130 0.00 0.00 0.00 4.83
781 793 3.364062 TGTCGCAATTTTTGTAACACGG 58.636 40.909 0.00 0.00 0.00 4.94
782 794 5.362987 TTTGTCGCAATTTTTGTAACACG 57.637 34.783 0.00 0.00 30.63 4.49
783 795 9.352163 CTAAATTTGTCGCAATTTTTGTAACAC 57.648 29.630 0.00 0.00 31.73 3.32
784 796 9.088512 ACTAAATTTGTCGCAATTTTTGTAACA 57.911 25.926 16.52 0.00 31.73 2.41
785 797 9.909043 AACTAAATTTGTCGCAATTTTTGTAAC 57.091 25.926 17.43 0.00 31.73 2.50
786 798 9.907576 CAACTAAATTTGTCGCAATTTTTGTAA 57.092 25.926 17.43 4.97 31.73 2.41
787 799 9.302345 TCAACTAAATTTGTCGCAATTTTTGTA 57.698 25.926 17.43 8.50 31.73 2.41
788 800 8.190888 TCAACTAAATTTGTCGCAATTTTTGT 57.809 26.923 0.00 14.01 31.73 2.83
789 801 9.094459 CATCAACTAAATTTGTCGCAATTTTTG 57.906 29.630 0.00 13.60 31.73 2.44
790 802 7.798052 GCATCAACTAAATTTGTCGCAATTTTT 59.202 29.630 0.00 9.85 31.73 1.94
791 803 7.290118 GCATCAACTAAATTTGTCGCAATTTT 58.710 30.769 0.00 13.14 31.73 1.82
792 804 6.128580 GGCATCAACTAAATTTGTCGCAATTT 60.129 34.615 0.00 5.48 33.63 1.82
793 805 5.348451 GGCATCAACTAAATTTGTCGCAATT 59.652 36.000 0.00 0.00 30.89 2.32
794 806 4.864247 GGCATCAACTAAATTTGTCGCAAT 59.136 37.500 0.00 0.00 30.89 3.56
795 807 4.022416 AGGCATCAACTAAATTTGTCGCAA 60.022 37.500 0.00 0.00 30.89 4.85
796 808 3.505680 AGGCATCAACTAAATTTGTCGCA 59.494 39.130 0.00 0.00 30.89 5.10
797 809 4.096732 AGGCATCAACTAAATTTGTCGC 57.903 40.909 0.00 0.00 0.00 5.19
798 810 4.788100 CGAAGGCATCAACTAAATTTGTCG 59.212 41.667 0.00 0.00 0.00 4.35
799 811 5.095490 CCGAAGGCATCAACTAAATTTGTC 58.905 41.667 0.00 0.00 46.14 3.18
800 812 5.059404 CCGAAGGCATCAACTAAATTTGT 57.941 39.130 0.00 0.00 46.14 2.83
822 834 1.305930 AAATTCAGGGTTCGCCGCTC 61.306 55.000 0.00 0.00 38.45 5.03
825 837 0.732538 GCAAAATTCAGGGTTCGCCG 60.733 55.000 0.00 0.00 38.45 6.46
827 839 2.061028 CAAGCAAAATTCAGGGTTCGC 58.939 47.619 0.00 0.00 0.00 4.70
843 855 1.953231 GAATTGGGGCTGGAGCAAGC 61.953 60.000 0.20 0.00 44.36 4.01
845 857 0.178938 TTGAATTGGGGCTGGAGCAA 60.179 50.000 0.20 0.00 44.36 3.91
846 858 0.899717 GTTGAATTGGGGCTGGAGCA 60.900 55.000 0.20 0.00 44.36 4.26
853 865 0.608130 GGGAAGTGTTGAATTGGGGC 59.392 55.000 0.00 0.00 0.00 5.80
948 960 1.141019 GCTCGACGGAATGCCTACA 59.859 57.895 0.00 0.00 0.00 2.74
1134 1147 2.480555 GAAACAGCCGTGGATGCG 59.519 61.111 3.64 0.00 34.49 4.73
1135 1148 2.480555 CGAAACAGCCGTGGATGC 59.519 61.111 3.64 0.00 34.49 3.91
1136 1149 2.480555 GCGAAACAGCCGTGGATG 59.519 61.111 1.93 1.93 37.56 3.51
1614 1656 1.050988 CGATGATGGGGTGGAGGACT 61.051 60.000 0.00 0.00 0.00 3.85
1773 1815 3.925090 CGGTCCGCCAGTATCCCC 61.925 72.222 0.00 0.00 34.09 4.81
2173 2215 9.654417 CCAACAAAAGAAGCTTTATCAAAATTG 57.346 29.630 0.00 1.33 0.00 2.32
2174 2216 8.839343 CCCAACAAAAGAAGCTTTATCAAAATT 58.161 29.630 0.00 0.00 0.00 1.82
2335 2405 8.791327 ATTCAAGTACATATGTCACACATCAA 57.209 30.769 12.68 0.00 39.88 2.57
2380 2450 8.650143 TTTCTTTACTAGCTTTCCCATGAATT 57.350 30.769 0.00 0.00 0.00 2.17
2400 2471 3.806949 TCACCAGCTACCCATTTTCTT 57.193 42.857 0.00 0.00 0.00 2.52
2441 2521 2.189784 GGAGCTTACTTCCCGCCC 59.810 66.667 0.00 0.00 0.00 6.13
2442 2522 0.107165 ATTGGAGCTTACTTCCCGCC 60.107 55.000 0.00 0.00 0.00 6.13
2665 2745 5.546621 TTGGTTAGCTTCAGTAAGACTGT 57.453 39.130 6.51 0.00 46.03 3.55
2761 2841 1.102154 TGTGAAACACTGCAGTTGGG 58.898 50.000 18.94 9.06 45.67 4.12
2867 2953 4.367166 TGGAATGATGGGGTAGTGAAGTA 58.633 43.478 0.00 0.00 0.00 2.24
2910 2996 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2911 2997 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2912 2998 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2938 3024 9.161572 ACTGTAGTCTCTATAGTGGAATCTCTA 57.838 37.037 0.00 0.00 0.00 2.43
2939 3025 8.041143 ACTGTAGTCTCTATAGTGGAATCTCT 57.959 38.462 0.00 0.00 0.00 3.10
2940 3026 7.117236 CGACTGTAGTCTCTATAGTGGAATCTC 59.883 44.444 10.07 0.00 42.66 2.75
2941 3027 6.932400 CGACTGTAGTCTCTATAGTGGAATCT 59.068 42.308 10.07 0.00 42.66 2.40
2942 3028 6.148150 CCGACTGTAGTCTCTATAGTGGAATC 59.852 46.154 13.69 0.85 42.66 2.52
2943 3029 5.998981 CCGACTGTAGTCTCTATAGTGGAAT 59.001 44.000 13.69 2.23 42.66 3.01
2944 3030 5.129980 TCCGACTGTAGTCTCTATAGTGGAA 59.870 44.000 13.69 0.00 42.66 3.53
2945 3031 4.652881 TCCGACTGTAGTCTCTATAGTGGA 59.347 45.833 13.69 13.95 42.66 4.02
2946 3032 4.958509 TCCGACTGTAGTCTCTATAGTGG 58.041 47.826 10.07 8.97 42.66 4.00
2947 3033 6.460781 AGATCCGACTGTAGTCTCTATAGTG 58.539 44.000 10.07 0.00 42.66 2.74
2948 3034 6.675413 AGATCCGACTGTAGTCTCTATAGT 57.325 41.667 10.05 6.02 42.66 2.12
2952 3038 9.697990 TCTATATAGATCCGACTGTAGTCTCTA 57.302 37.037 8.44 10.13 42.66 2.43
2953 3039 8.472413 GTCTATATAGATCCGACTGTAGTCTCT 58.528 40.741 15.43 8.49 37.50 3.10
2954 3040 7.433131 CGTCTATATAGATCCGACTGTAGTCTC 59.567 44.444 15.43 1.83 37.50 3.36
2955 3041 7.259882 CGTCTATATAGATCCGACTGTAGTCT 58.740 42.308 15.43 0.00 37.50 3.24
2956 3042 6.019640 GCGTCTATATAGATCCGACTGTAGTC 60.020 46.154 20.87 1.92 36.89 2.59
2957 3043 5.811613 GCGTCTATATAGATCCGACTGTAGT 59.188 44.000 20.87 0.00 34.39 2.73
2958 3044 5.234757 GGCGTCTATATAGATCCGACTGTAG 59.765 48.000 20.87 4.97 34.39 2.74
2959 3045 5.105023 AGGCGTCTATATAGATCCGACTGTA 60.105 44.000 23.34 0.00 38.33 2.74
2960 3046 3.940221 GGCGTCTATATAGATCCGACTGT 59.060 47.826 20.87 0.00 34.39 3.55
2961 3047 4.193090 AGGCGTCTATATAGATCCGACTG 58.807 47.826 23.34 8.00 38.33 3.51
2962 3048 4.490899 AGGCGTCTATATAGATCCGACT 57.509 45.455 20.09 20.09 35.94 4.18
2963 3049 5.564048 AAAGGCGTCTATATAGATCCGAC 57.436 43.478 20.87 18.95 34.83 4.79
2964 3050 7.108194 TCTAAAAGGCGTCTATATAGATCCGA 58.892 38.462 20.87 12.40 34.83 4.55
2965 3051 7.066043 ACTCTAAAAGGCGTCTATATAGATCCG 59.934 40.741 15.43 15.22 34.83 4.18
2966 3052 8.283699 ACTCTAAAAGGCGTCTATATAGATCC 57.716 38.462 15.43 17.53 34.39 3.36
2972 3058 9.531158 AACCTATACTCTAAAAGGCGTCTATAT 57.469 33.333 0.00 0.00 31.98 0.86
2973 3059 8.930846 AACCTATACTCTAAAAGGCGTCTATA 57.069 34.615 0.00 0.00 31.98 1.31
2974 3060 7.504911 TGAACCTATACTCTAAAAGGCGTCTAT 59.495 37.037 0.00 0.00 31.98 1.98
2975 3061 6.830324 TGAACCTATACTCTAAAAGGCGTCTA 59.170 38.462 0.00 0.00 31.98 2.59
2976 3062 5.655532 TGAACCTATACTCTAAAAGGCGTCT 59.344 40.000 0.00 0.00 31.98 4.18
2977 3063 5.747675 GTGAACCTATACTCTAAAAGGCGTC 59.252 44.000 0.00 0.00 31.98 5.19
2978 3064 5.421374 AGTGAACCTATACTCTAAAAGGCGT 59.579 40.000 0.00 0.00 31.98 5.68
2979 3065 5.903810 AGTGAACCTATACTCTAAAAGGCG 58.096 41.667 0.00 0.00 31.98 5.52
2980 3066 6.875076 TGAGTGAACCTATACTCTAAAAGGC 58.125 40.000 0.00 0.00 42.86 4.35
2981 3067 9.892130 AAATGAGTGAACCTATACTCTAAAAGG 57.108 33.333 0.00 0.00 42.86 3.11
2984 3070 9.162764 GCAAAATGAGTGAACCTATACTCTAAA 57.837 33.333 0.00 0.00 42.86 1.85
2985 3071 8.540388 AGCAAAATGAGTGAACCTATACTCTAA 58.460 33.333 0.00 0.00 42.86 2.10
2986 3072 8.079211 AGCAAAATGAGTGAACCTATACTCTA 57.921 34.615 0.00 0.00 42.86 2.43
2987 3073 6.951971 AGCAAAATGAGTGAACCTATACTCT 58.048 36.000 0.00 0.00 42.86 3.24
2988 3074 6.258947 GGAGCAAAATGAGTGAACCTATACTC 59.741 42.308 0.00 0.00 42.77 2.59
2989 3075 6.116126 GGAGCAAAATGAGTGAACCTATACT 58.884 40.000 0.00 0.00 0.00 2.12
2990 3076 6.364945 GGAGCAAAATGAGTGAACCTATAC 57.635 41.667 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.