Multiple sequence alignment - TraesCS2D01G410600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G410600 chr2D 100.000 5234 0 0 1 5234 525302422 525297189 0.000000e+00 9666.0
1 TraesCS2D01G410600 chr2D 92.275 233 16 2 1 231 525406416 525406184 3.910000e-86 329.0
2 TraesCS2D01G410600 chr2D 90.213 235 21 2 1 233 385981032 385981266 6.580000e-79 305.0
3 TraesCS2D01G410600 chr2A 92.459 4469 208 59 232 4637 671271117 671275519 0.000000e+00 6266.0
4 TraesCS2D01G410600 chr2A 89.280 597 26 11 4649 5226 671275646 671276223 0.000000e+00 713.0
5 TraesCS2D01G410600 chr2A 77.778 108 20 3 489 596 517928144 517928247 4.380000e-06 63.9
6 TraesCS2D01G410600 chr2B 93.748 4079 160 38 604 4637 622473261 622477289 0.000000e+00 6032.0
7 TraesCS2D01G410600 chr2B 89.447 597 28 12 4637 5217 622477374 622477951 0.000000e+00 721.0
8 TraesCS2D01G410600 chr2B 84.330 351 30 13 233 559 622472908 622473257 2.350000e-83 320.0
9 TraesCS2D01G410600 chr2B 93.182 44 3 0 492 535 98301286 98301243 1.220000e-06 65.8
10 TraesCS2D01G410600 chr7D 91.525 236 18 2 1 234 486312583 486312348 1.820000e-84 324.0
11 TraesCS2D01G410600 chr7D 83.562 73 12 0 489 561 475193385 475193457 9.400000e-08 69.4
12 TraesCS2D01G410600 chr5D 91.304 230 18 2 1 228 198003657 198003886 3.940000e-81 313.0
13 TraesCS2D01G410600 chr5D 79.121 91 19 0 492 582 58225931 58226021 4.380000e-06 63.9
14 TraesCS2D01G410600 chr4D 90.598 234 20 2 1 232 439001472 439001239 5.090000e-80 309.0
15 TraesCS2D01G410600 chr1D 90.171 234 21 2 1 232 345259211 345259444 2.370000e-78 303.0
16 TraesCS2D01G410600 chr1D 90.435 230 20 2 1 228 196163047 196162818 8.520000e-78 302.0
17 TraesCS2D01G410600 chr6D 90.435 230 19 3 1 228 328441461 328441689 3.060000e-77 300.0
18 TraesCS2D01G410600 chr3D 89.831 236 21 3 1 233 146683807 146684042 3.060000e-77 300.0
19 TraesCS2D01G410600 chr1A 81.481 108 16 3 492 598 16546746 16546642 9.340000e-13 86.1
20 TraesCS2D01G410600 chr7A 97.222 36 1 0 553 588 446129494 446129459 1.570000e-05 62.1
21 TraesCS2D01G410600 chr4A 77.451 102 19 3 492 592 648137053 648136955 2.040000e-04 58.4
22 TraesCS2D01G410600 chr4A 100.000 29 0 0 492 520 75355847 75355819 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G410600 chr2D 525297189 525302422 5233 True 9666.000000 9666 100.0000 1 5234 1 chr2D.!!$R1 5233
1 TraesCS2D01G410600 chr2A 671271117 671276223 5106 False 3489.500000 6266 90.8695 232 5226 2 chr2A.!!$F2 4994
2 TraesCS2D01G410600 chr2B 622472908 622477951 5043 False 2357.666667 6032 89.1750 233 5217 3 chr2B.!!$F1 4984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.036732 CAAGCAGGCAAGTCTGGGTA 59.963 55.000 3.62 0.00 35.43 3.69 F
627 652 0.036765 AAGATTAGCGGCCGTCACAA 60.037 50.000 28.70 15.51 0.00 3.33 F
778 821 0.476771 TCCTCCTTTTGTTTCGGCCT 59.523 50.000 0.00 0.00 0.00 5.19 F
1396 1446 1.066502 GGGACTGAAGGAAGAGCTCAC 60.067 57.143 17.77 9.41 0.00 3.51 F
2536 2599 0.692476 TGCATGGTCAGCTTGGTAGT 59.308 50.000 0.00 0.00 0.00 2.73 F
3469 3541 0.804364 TGGTTTAATGCTGCGAGCTG 59.196 50.000 0.00 0.00 42.97 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1387 0.389426 GGTTACGATGTGACAGGCGT 60.389 55.000 17.80 17.80 40.42 5.68 R
1748 1804 2.044806 AACTGTTCTCCGGCACAGCT 62.045 55.000 21.61 11.59 43.72 4.24 R
2196 2252 2.614057 GGATTTTCTAGGTGTCCGCATG 59.386 50.000 0.00 0.00 0.00 4.06 R
2855 2926 2.757314 TCGTGAGCTCATGACTCTCAAT 59.243 45.455 30.49 0.00 38.42 2.57 R
3687 3759 0.105760 ACACCTTGGCCATGTTTCCA 60.106 50.000 6.09 0.00 0.00 3.53 R
4348 4423 0.179702 ATCATGAGCTGACGTGCCAT 59.820 50.000 0.09 0.00 36.48 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.571250 GTCATGTGAACCTCGCGA 57.429 55.556 9.26 9.26 0.00 5.87
18 19 2.363807 GTCATGTGAACCTCGCGAG 58.636 57.895 29.06 29.06 0.00 5.03
40 41 2.103373 TGCCTCCGCATAGATATCTCC 58.897 52.381 8.95 0.00 41.12 3.71
41 42 1.066303 GCCTCCGCATAGATATCTCCG 59.934 57.143 8.95 10.47 34.03 4.63
42 43 1.066303 CCTCCGCATAGATATCTCCGC 59.934 57.143 8.95 11.94 0.00 5.54
43 44 2.020720 CTCCGCATAGATATCTCCGCT 58.979 52.381 8.95 0.00 0.00 5.52
44 45 3.206964 CTCCGCATAGATATCTCCGCTA 58.793 50.000 8.95 3.77 0.00 4.26
45 46 2.943690 TCCGCATAGATATCTCCGCTAC 59.056 50.000 8.95 0.00 0.00 3.58
46 47 2.946329 CCGCATAGATATCTCCGCTACT 59.054 50.000 8.95 0.00 0.00 2.57
47 48 3.002862 CCGCATAGATATCTCCGCTACTC 59.997 52.174 8.95 0.00 0.00 2.59
48 49 3.623510 CGCATAGATATCTCCGCTACTCA 59.376 47.826 8.95 0.00 0.00 3.41
49 50 4.260579 CGCATAGATATCTCCGCTACTCAG 60.261 50.000 8.95 0.00 0.00 3.35
50 51 4.036262 GCATAGATATCTCCGCTACTCAGG 59.964 50.000 8.95 0.00 0.00 3.86
51 52 5.432645 CATAGATATCTCCGCTACTCAGGA 58.567 45.833 8.95 0.00 34.93 3.86
54 55 3.124686 CTCCGCTACTCAGGAGCC 58.875 66.667 2.24 0.00 46.23 4.70
55 56 2.829003 TCCGCTACTCAGGAGCCG 60.829 66.667 2.24 0.00 36.53 5.52
56 57 3.905678 CCGCTACTCAGGAGCCGG 61.906 72.222 2.24 4.18 36.53 6.13
57 58 4.577246 CGCTACTCAGGAGCCGGC 62.577 72.222 21.89 21.89 36.53 6.13
58 59 4.228567 GCTACTCAGGAGCCGGCC 62.229 72.222 26.15 15.07 33.60 6.13
59 60 2.443016 CTACTCAGGAGCCGGCCT 60.443 66.667 26.15 11.83 39.37 5.19
60 61 2.038975 TACTCAGGAGCCGGCCTT 59.961 61.111 26.15 4.93 35.66 4.35
61 62 2.303549 CTACTCAGGAGCCGGCCTTG 62.304 65.000 26.15 20.69 35.66 3.61
85 86 4.101448 CGCCCCAGGGAGGTCTTG 62.101 72.222 7.25 0.00 37.50 3.02
86 87 3.732849 GCCCCAGGGAGGTCTTGG 61.733 72.222 7.25 0.00 37.50 3.61
87 88 2.204151 CCCCAGGGAGGTCTTGGT 60.204 66.667 7.25 0.00 37.50 3.67
88 89 2.606587 CCCCAGGGAGGTCTTGGTG 61.607 68.421 7.25 0.00 37.50 4.17
89 90 1.847968 CCCAGGGAGGTCTTGGTGT 60.848 63.158 0.00 0.00 34.66 4.16
90 91 1.679898 CCAGGGAGGTCTTGGTGTC 59.320 63.158 0.00 0.00 0.00 3.67
91 92 1.293498 CAGGGAGGTCTTGGTGTCG 59.707 63.158 0.00 0.00 0.00 4.35
92 93 1.152312 AGGGAGGTCTTGGTGTCGT 60.152 57.895 0.00 0.00 0.00 4.34
93 94 1.186267 AGGGAGGTCTTGGTGTCGTC 61.186 60.000 0.00 0.00 0.00 4.20
94 95 1.292541 GGAGGTCTTGGTGTCGTCC 59.707 63.158 0.00 0.00 33.29 4.79
95 96 1.080705 GAGGTCTTGGTGTCGTCCG 60.081 63.158 0.00 0.00 0.00 4.79
96 97 2.737376 GGTCTTGGTGTCGTCCGC 60.737 66.667 0.00 0.00 0.00 5.54
97 98 2.737376 GTCTTGGTGTCGTCCGCC 60.737 66.667 1.25 1.25 44.53 6.13
98 99 2.915659 TCTTGGTGTCGTCCGCCT 60.916 61.111 8.49 0.00 44.58 5.52
99 100 2.432628 CTTGGTGTCGTCCGCCTC 60.433 66.667 8.49 0.00 44.58 4.70
100 101 4.351938 TTGGTGTCGTCCGCCTCG 62.352 66.667 8.49 0.00 44.58 4.63
137 138 2.828933 GAGGGTCTCGAGTTGTTGC 58.171 57.895 13.13 0.00 0.00 4.17
138 139 0.318762 GAGGGTCTCGAGTTGTTGCT 59.681 55.000 13.13 0.00 0.00 3.91
139 140 1.544691 GAGGGTCTCGAGTTGTTGCTA 59.455 52.381 13.13 0.00 0.00 3.49
140 141 1.272769 AGGGTCTCGAGTTGTTGCTAC 59.727 52.381 13.13 0.00 0.00 3.58
141 142 1.672145 GGGTCTCGAGTTGTTGCTACC 60.672 57.143 13.13 9.62 0.00 3.18
142 143 1.337821 GTCTCGAGTTGTTGCTACCG 58.662 55.000 13.13 0.00 0.00 4.02
143 144 1.068748 GTCTCGAGTTGTTGCTACCGA 60.069 52.381 13.13 0.00 0.00 4.69
144 145 1.610038 TCTCGAGTTGTTGCTACCGAA 59.390 47.619 13.13 0.00 0.00 4.30
145 146 1.719780 CTCGAGTTGTTGCTACCGAAC 59.280 52.381 3.62 0.00 0.00 3.95
146 147 0.788391 CGAGTTGTTGCTACCGAACC 59.212 55.000 0.00 0.00 0.00 3.62
147 148 1.604693 CGAGTTGTTGCTACCGAACCT 60.605 52.381 0.00 0.00 0.00 3.50
148 149 1.798813 GAGTTGTTGCTACCGAACCTG 59.201 52.381 0.00 0.00 0.00 4.00
149 150 0.872388 GTTGTTGCTACCGAACCTGG 59.128 55.000 0.00 0.00 0.00 4.45
150 151 0.250553 TTGTTGCTACCGAACCTGGG 60.251 55.000 0.00 0.00 0.00 4.45
151 152 2.038837 GTTGCTACCGAACCTGGGC 61.039 63.158 0.00 0.00 0.00 5.36
152 153 3.262448 TTGCTACCGAACCTGGGCC 62.262 63.158 0.00 0.00 0.00 5.80
153 154 3.712907 GCTACCGAACCTGGGCCA 61.713 66.667 5.85 5.85 0.00 5.36
154 155 3.043999 GCTACCGAACCTGGGCCAT 62.044 63.158 6.72 0.00 0.00 4.40
155 156 1.692173 GCTACCGAACCTGGGCCATA 61.692 60.000 6.72 0.00 0.00 2.74
156 157 0.106149 CTACCGAACCTGGGCCATAC 59.894 60.000 6.72 0.00 0.00 2.39
157 158 1.339644 TACCGAACCTGGGCCATACC 61.340 60.000 6.72 0.00 37.93 2.73
158 159 2.203015 CGAACCTGGGCCATACCG 60.203 66.667 6.72 4.95 40.62 4.02
159 160 2.192175 GAACCTGGGCCATACCGG 59.808 66.667 6.72 7.46 40.62 5.28
168 169 2.508928 CCATACCGGGCCGTTGAT 59.491 61.111 26.32 11.87 0.00 2.57
169 170 1.891919 CCATACCGGGCCGTTGATG 60.892 63.158 26.32 22.14 0.00 3.07
170 171 1.891919 CATACCGGGCCGTTGATGG 60.892 63.158 26.32 10.81 0.00 3.51
171 172 2.067605 ATACCGGGCCGTTGATGGA 61.068 57.895 26.32 5.73 0.00 3.41
172 173 2.040009 ATACCGGGCCGTTGATGGAG 62.040 60.000 26.32 9.20 0.00 3.86
176 177 3.134127 GGCCGTTGATGGAGCCAC 61.134 66.667 0.00 0.00 45.07 5.01
177 178 3.499737 GCCGTTGATGGAGCCACG 61.500 66.667 0.00 0.00 0.00 4.94
178 179 2.047274 CCGTTGATGGAGCCACGT 60.047 61.111 0.00 0.00 0.00 4.49
179 180 2.390599 CCGTTGATGGAGCCACGTG 61.391 63.158 9.08 9.08 0.00 4.49
180 181 2.390599 CGTTGATGGAGCCACGTGG 61.391 63.158 30.66 30.66 38.53 4.94
202 203 2.670934 CCGCAAGCAGGCAAGTCT 60.671 61.111 0.50 0.00 0.00 3.24
203 204 2.559840 CGCAAGCAGGCAAGTCTG 59.440 61.111 0.00 0.00 37.79 3.51
204 205 2.960170 GCAAGCAGGCAAGTCTGG 59.040 61.111 3.62 0.00 35.43 3.86
205 206 2.633509 GCAAGCAGGCAAGTCTGGG 61.634 63.158 3.62 0.00 35.43 4.45
206 207 1.228367 CAAGCAGGCAAGTCTGGGT 60.228 57.895 3.62 0.00 35.43 4.51
207 208 0.036732 CAAGCAGGCAAGTCTGGGTA 59.963 55.000 3.62 0.00 35.43 3.69
208 209 0.036875 AAGCAGGCAAGTCTGGGTAC 59.963 55.000 3.62 0.00 35.43 3.34
209 210 0.838122 AGCAGGCAAGTCTGGGTACT 60.838 55.000 3.62 0.00 35.43 2.73
210 211 0.391793 GCAGGCAAGTCTGGGTACTC 60.392 60.000 3.62 0.00 35.43 2.59
211 212 0.250513 CAGGCAAGTCTGGGTACTCC 59.749 60.000 0.00 0.00 0.00 3.85
220 221 3.306379 GGGTACTCCCGTTCCCAG 58.694 66.667 2.71 0.00 46.80 4.45
221 222 2.364780 GGGTACTCCCGTTCCCAGG 61.365 68.421 2.71 0.00 46.80 4.45
222 223 1.305549 GGTACTCCCGTTCCCAGGA 60.306 63.158 0.00 0.00 0.00 3.86
223 224 1.611474 GGTACTCCCGTTCCCAGGAC 61.611 65.000 0.00 0.00 0.00 3.85
224 225 1.679977 TACTCCCGTTCCCAGGACG 60.680 63.158 0.00 0.00 0.00 4.79
225 226 4.452733 CTCCCGTTCCCAGGACGC 62.453 72.222 0.00 0.00 0.00 5.19
308 309 4.089780 CGTACGCTATTCGGTTGTGTTAAA 59.910 41.667 0.52 0.00 43.86 1.52
380 381 3.520691 TGAGTGTAGTGGTACCTCAGT 57.479 47.619 14.36 9.75 34.31 3.41
383 384 4.017808 GAGTGTAGTGGTACCTCAGTCAT 58.982 47.826 14.36 0.00 31.63 3.06
386 387 4.219944 GTGTAGTGGTACCTCAGTCATCAA 59.780 45.833 14.36 0.00 0.00 2.57
401 402 2.711009 TCATCAAGGACCAAACCTCAGT 59.289 45.455 0.00 0.00 39.62 3.41
485 510 0.617249 AGGGAGGCTCAGTCTCAAGG 60.617 60.000 17.69 0.00 35.78 3.61
487 512 1.153667 GAGGCTCAGTCTCAAGGCG 60.154 63.158 10.25 0.00 42.49 5.52
521 546 5.818857 AGTCTCTCGAAGGTACTCATAGAAC 59.181 44.000 0.00 0.00 38.49 3.01
524 549 7.658575 GTCTCTCGAAGGTACTCATAGAACTAT 59.341 40.741 0.00 0.00 38.49 2.12
526 551 7.506971 TCTCGAAGGTACTCATAGAACTATGA 58.493 38.462 19.18 19.18 46.81 2.15
535 560 4.051237 TCATAGAACTATGATGTGCGTGC 58.949 43.478 17.23 0.00 44.87 5.34
536 561 2.385013 AGAACTATGATGTGCGTGCA 57.615 45.000 0.00 0.00 0.00 4.57
538 563 2.868583 AGAACTATGATGTGCGTGCATC 59.131 45.455 12.34 12.34 43.97 3.91
551 576 1.402852 CGTGCATCCGTTCAGAGAAGA 60.403 52.381 0.00 0.00 0.00 2.87
568 593 5.706369 AGAGAAGAGAGTGTATGTACGTGTT 59.294 40.000 0.00 0.00 0.00 3.32
592 617 3.157922 GCGTTTGCTTGTGTGTACC 57.842 52.632 0.00 0.00 38.39 3.34
594 619 1.596954 GCGTTTGCTTGTGTGTACCTG 60.597 52.381 0.00 0.00 38.39 4.00
595 620 1.668751 CGTTTGCTTGTGTGTACCTGT 59.331 47.619 0.00 0.00 0.00 4.00
597 622 3.426963 CGTTTGCTTGTGTGTACCTGTTT 60.427 43.478 0.00 0.00 0.00 2.83
598 623 4.102649 GTTTGCTTGTGTGTACCTGTTTC 58.897 43.478 0.00 0.00 0.00 2.78
599 624 3.275617 TGCTTGTGTGTACCTGTTTCT 57.724 42.857 0.00 0.00 0.00 2.52
600 625 3.202906 TGCTTGTGTGTACCTGTTTCTC 58.797 45.455 0.00 0.00 0.00 2.87
601 626 3.202906 GCTTGTGTGTACCTGTTTCTCA 58.797 45.455 0.00 0.00 0.00 3.27
602 627 3.625764 GCTTGTGTGTACCTGTTTCTCAA 59.374 43.478 0.00 0.00 0.00 3.02
627 652 0.036765 AAGATTAGCGGCCGTCACAA 60.037 50.000 28.70 15.51 0.00 3.33
663 688 9.928236 CGCCACAAAATAATAATAAAATTTGGG 57.072 29.630 0.00 0.00 33.31 4.12
698 725 2.995574 AACGGAGCGTAGGCCACT 60.996 61.111 5.01 0.00 39.99 4.00
708 735 3.512724 AGCGTAGGCCACTAAGAAAGTTA 59.487 43.478 5.01 0.00 41.24 2.24
726 753 3.603365 GGCCAACATACAGCCCAC 58.397 61.111 0.00 0.00 41.00 4.61
729 756 1.691219 CCAACATACAGCCCACCCT 59.309 57.895 0.00 0.00 0.00 4.34
730 757 0.916086 CCAACATACAGCCCACCCTA 59.084 55.000 0.00 0.00 0.00 3.53
731 758 1.134098 CCAACATACAGCCCACCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
732 759 1.559682 CAACATACAGCCCACCCTAGT 59.440 52.381 0.00 0.00 0.00 2.57
737 764 2.337359 ACAGCCCACCCTAGTAAAGA 57.663 50.000 0.00 0.00 0.00 2.52
740 767 2.838202 CAGCCCACCCTAGTAAAGAAGA 59.162 50.000 0.00 0.00 0.00 2.87
762 805 2.958355 CCCAGTTCATTGTGTTGTTCCT 59.042 45.455 0.00 0.00 0.00 3.36
769 812 5.261209 TCATTGTGTTGTTCCTCCTTTTG 57.739 39.130 0.00 0.00 0.00 2.44
771 814 5.186797 TCATTGTGTTGTTCCTCCTTTTGTT 59.813 36.000 0.00 0.00 0.00 2.83
773 816 5.066968 TGTGTTGTTCCTCCTTTTGTTTC 57.933 39.130 0.00 0.00 0.00 2.78
774 817 4.102649 GTGTTGTTCCTCCTTTTGTTTCG 58.897 43.478 0.00 0.00 0.00 3.46
775 818 3.129638 TGTTGTTCCTCCTTTTGTTTCGG 59.870 43.478 0.00 0.00 0.00 4.30
776 819 1.679153 TGTTCCTCCTTTTGTTTCGGC 59.321 47.619 0.00 0.00 0.00 5.54
777 820 1.000607 GTTCCTCCTTTTGTTTCGGCC 60.001 52.381 0.00 0.00 0.00 6.13
778 821 0.476771 TCCTCCTTTTGTTTCGGCCT 59.523 50.000 0.00 0.00 0.00 5.19
779 822 1.133606 TCCTCCTTTTGTTTCGGCCTT 60.134 47.619 0.00 0.00 0.00 4.35
781 824 2.888414 CCTCCTTTTGTTTCGGCCTTTA 59.112 45.455 0.00 0.00 0.00 1.85
785 828 6.016213 TCCTTTTGTTTCGGCCTTTATTAC 57.984 37.500 0.00 0.00 0.00 1.89
954 997 3.376918 GCCCAGGCTGCAGTTTCC 61.377 66.667 16.64 8.24 38.26 3.13
957 1000 4.093952 CAGGCTGCAGTTTCCGCG 62.094 66.667 16.64 0.00 0.00 6.46
958 1001 4.314440 AGGCTGCAGTTTCCGCGA 62.314 61.111 16.64 0.00 0.00 5.87
1217 1260 4.574599 AGGTGACTGATTGAAACTTTGC 57.425 40.909 0.00 0.00 41.13 3.68
1238 1283 5.672503 TGCCCGTTTTACTGCATAGTAATA 58.327 37.500 0.00 0.00 45.93 0.98
1239 1284 6.114089 TGCCCGTTTTACTGCATAGTAATAA 58.886 36.000 0.00 0.00 45.93 1.40
1240 1285 6.768861 TGCCCGTTTTACTGCATAGTAATAAT 59.231 34.615 0.00 0.00 45.93 1.28
1297 1342 5.514279 GGTTTGTTGAGTGTGATTTCTCTG 58.486 41.667 0.00 0.00 0.00 3.35
1300 1345 5.233083 TGTTGAGTGTGATTTCTCTGGAT 57.767 39.130 0.00 0.00 0.00 3.41
1326 1371 7.931275 AGAGTTTAATTCTGGTCAGTGAAAAC 58.069 34.615 0.00 0.00 0.00 2.43
1341 1387 4.708421 AGTGAAAACTAGTACCGATGGCTA 59.292 41.667 0.00 0.00 0.00 3.93
1363 1409 2.794981 CGCCTGTCACATCGTAACCTAG 60.795 54.545 0.00 0.00 0.00 3.02
1367 1413 5.103000 CCTGTCACATCGTAACCTAGAAAG 58.897 45.833 0.00 0.00 0.00 2.62
1371 1421 7.383687 TGTCACATCGTAACCTAGAAAGAAAT 58.616 34.615 0.00 0.00 0.00 2.17
1384 1434 6.942576 CCTAGAAAGAAATTGAAGGGACTGAA 59.057 38.462 0.00 0.00 40.86 3.02
1385 1435 6.890979 AGAAAGAAATTGAAGGGACTGAAG 57.109 37.500 0.00 0.00 40.86 3.02
1389 1439 5.320277 AGAAATTGAAGGGACTGAAGGAAG 58.680 41.667 0.00 0.00 40.86 3.46
1395 1445 1.203237 AGGGACTGAAGGAAGAGCTCA 60.203 52.381 17.77 0.00 37.18 4.26
1396 1446 1.066502 GGGACTGAAGGAAGAGCTCAC 60.067 57.143 17.77 9.41 0.00 3.51
1397 1447 1.620819 GGACTGAAGGAAGAGCTCACA 59.379 52.381 17.77 5.21 0.00 3.58
1398 1448 2.235898 GGACTGAAGGAAGAGCTCACAT 59.764 50.000 17.77 4.28 0.00 3.21
1399 1449 3.307339 GGACTGAAGGAAGAGCTCACATT 60.307 47.826 17.77 13.12 0.00 2.71
1400 1450 4.322567 GACTGAAGGAAGAGCTCACATTT 58.677 43.478 17.77 0.20 0.00 2.32
1401 1451 4.723309 ACTGAAGGAAGAGCTCACATTTT 58.277 39.130 17.77 0.00 0.00 1.82
1402 1452 5.136105 ACTGAAGGAAGAGCTCACATTTTT 58.864 37.500 17.77 0.00 0.00 1.94
1403 1453 5.009410 ACTGAAGGAAGAGCTCACATTTTTG 59.991 40.000 17.77 9.57 0.00 2.44
1404 1454 3.930634 AGGAAGAGCTCACATTTTTGC 57.069 42.857 17.77 5.50 0.00 3.68
1405 1455 2.560105 AGGAAGAGCTCACATTTTTGCC 59.440 45.455 17.77 0.55 0.00 4.52
1406 1456 2.297033 GGAAGAGCTCACATTTTTGCCA 59.703 45.455 17.77 0.00 0.00 4.92
1407 1457 3.243839 GGAAGAGCTCACATTTTTGCCAA 60.244 43.478 17.77 0.00 0.00 4.52
1408 1458 4.370917 GAAGAGCTCACATTTTTGCCAAA 58.629 39.130 17.77 0.00 0.00 3.28
1409 1459 4.612264 AGAGCTCACATTTTTGCCAAAT 57.388 36.364 17.77 0.00 0.00 2.32
1410 1460 5.726980 AGAGCTCACATTTTTGCCAAATA 57.273 34.783 17.77 0.00 0.00 1.40
1411 1461 6.290294 AGAGCTCACATTTTTGCCAAATAT 57.710 33.333 17.77 0.00 0.00 1.28
1412 1462 6.103997 AGAGCTCACATTTTTGCCAAATATG 58.896 36.000 17.77 16.03 0.00 1.78
1415 1465 4.564041 TCACATTTTTGCCAAATATGCGT 58.436 34.783 17.13 0.61 0.00 5.24
1425 1475 3.064271 GCCAAATATGCGTCGTTTTCCTA 59.936 43.478 0.00 0.00 0.00 2.94
1426 1476 4.437659 GCCAAATATGCGTCGTTTTCCTAA 60.438 41.667 0.00 0.00 0.00 2.69
1441 1491 7.825270 TCGTTTTCCTAATAAACTAGCCAATCA 59.175 33.333 0.00 0.00 34.20 2.57
1475 1526 8.873830 CAGTATGTGTGGTTGAAAGATTACTAG 58.126 37.037 0.00 0.00 0.00 2.57
1476 1527 8.594550 AGTATGTGTGGTTGAAAGATTACTAGT 58.405 33.333 0.00 0.00 0.00 2.57
1479 1530 8.597662 TGTGTGGTTGAAAGATTACTAGTTAC 57.402 34.615 0.00 0.00 0.00 2.50
1481 1532 6.869913 TGTGGTTGAAAGATTACTAGTTACCG 59.130 38.462 0.00 0.00 0.00 4.02
1486 1538 9.846248 GTTGAAAGATTACTAGTTACCGTCTTA 57.154 33.333 0.00 0.00 0.00 2.10
1497 1549 5.109903 AGTTACCGTCTTATCTGTTCATGC 58.890 41.667 0.00 0.00 0.00 4.06
1498 1550 3.610040 ACCGTCTTATCTGTTCATGCA 57.390 42.857 0.00 0.00 0.00 3.96
1507 1559 8.790718 GTCTTATCTGTTCATGCATAATCCATT 58.209 33.333 0.00 0.00 0.00 3.16
1518 1570 4.222366 TGCATAATCCATTGCAAACTTCCA 59.778 37.500 1.71 0.00 45.30 3.53
1519 1571 5.177326 GCATAATCCATTGCAAACTTCCAA 58.823 37.500 1.71 0.00 38.72 3.53
1520 1572 5.292589 GCATAATCCATTGCAAACTTCCAAG 59.707 40.000 1.71 0.00 38.72 3.61
1521 1573 4.961438 AATCCATTGCAAACTTCCAAGT 57.039 36.364 1.71 0.00 42.04 3.16
1529 1582 4.206375 TGCAAACTTCCAAGTCATTCTCA 58.794 39.130 0.00 0.00 38.57 3.27
1602 1655 7.976414 ACCCATTGATATTTGGAAATCAAGA 57.024 32.000 4.33 0.00 43.34 3.02
1629 1682 3.585862 CAACTTGTACTACGGATGCAGT 58.414 45.455 0.00 0.00 0.00 4.40
1686 1740 1.766496 TCAGTCAAGTCCGTCCCTTTT 59.234 47.619 0.00 0.00 0.00 2.27
1689 1743 4.131596 CAGTCAAGTCCGTCCCTTTTAAA 58.868 43.478 0.00 0.00 0.00 1.52
1690 1744 4.024302 CAGTCAAGTCCGTCCCTTTTAAAC 60.024 45.833 0.00 0.00 0.00 2.01
1691 1745 4.132336 GTCAAGTCCGTCCCTTTTAAACT 58.868 43.478 0.00 0.00 0.00 2.66
1692 1746 5.070847 AGTCAAGTCCGTCCCTTTTAAACTA 59.929 40.000 0.00 0.00 0.00 2.24
1704 1760 5.163754 CCCTTTTAAACTATGTGAAGAGCGG 60.164 44.000 0.00 0.00 0.00 5.52
1743 1799 5.300752 TGAGGTTTCTCTGTGTTCATCTTC 58.699 41.667 0.00 0.00 40.58 2.87
1748 1804 2.634453 TCTCTGTGTTCATCTTCCAGCA 59.366 45.455 0.00 0.00 0.00 4.41
1772 1828 1.272769 GTGCCGGAGAACAGTTCTACT 59.727 52.381 21.28 0.00 40.87 2.57
1967 2023 1.534476 TGCCCGAGTTAGACCACCA 60.534 57.895 0.00 0.00 0.00 4.17
2063 2119 3.195825 ACAGGTACTTGTCCTCATACTGC 59.804 47.826 4.53 0.00 34.60 4.40
2071 2127 3.599343 TGTCCTCATACTGCATGTGTTC 58.401 45.455 0.00 0.00 35.96 3.18
2203 2259 1.224315 CTTCCATGGACCATGCGGA 59.776 57.895 26.56 17.70 40.20 5.54
2277 2333 5.594725 TCTGATGCGAAGGAGAGTAAGTAAT 59.405 40.000 0.00 0.00 0.00 1.89
2314 2375 6.509418 TTGGAACTTGTTGCATATTACTCC 57.491 37.500 8.41 0.00 0.00 3.85
2536 2599 0.692476 TGCATGGTCAGCTTGGTAGT 59.308 50.000 0.00 0.00 0.00 2.73
2547 2610 4.997395 TCAGCTTGGTAGTCTCATTTGTTC 59.003 41.667 0.00 0.00 0.00 3.18
2649 2720 5.734503 GCGATATGTGAGTCATCTGTTCTGA 60.735 44.000 0.00 0.00 37.91 3.27
2748 2819 5.968387 AACTAAGTTTGATTATCGGCTCG 57.032 39.130 0.00 0.00 0.00 5.03
2832 2903 7.066307 AGATTCAAAAAGCCCATACAAACTT 57.934 32.000 0.00 0.00 0.00 2.66
3113 3184 6.773638 ACTCTGAAACTTGGTGAGATAATGT 58.226 36.000 0.00 0.00 0.00 2.71
3223 3294 4.799564 TTTGTGTTTCTCTTTTGCACCT 57.200 36.364 0.00 0.00 0.00 4.00
3224 3295 5.906113 TTTGTGTTTCTCTTTTGCACCTA 57.094 34.783 0.00 0.00 0.00 3.08
3225 3296 4.893424 TGTGTTTCTCTTTTGCACCTAC 57.107 40.909 0.00 0.00 0.00 3.18
3226 3297 4.265893 TGTGTTTCTCTTTTGCACCTACA 58.734 39.130 0.00 0.00 0.00 2.74
3227 3298 4.702612 TGTGTTTCTCTTTTGCACCTACAA 59.297 37.500 0.00 0.00 0.00 2.41
3228 3299 5.034797 GTGTTTCTCTTTTGCACCTACAAC 58.965 41.667 0.00 0.00 0.00 3.32
3266 3338 8.306761 GTTGAGTATGATTTCCCAAAAGAACAT 58.693 33.333 0.00 0.00 0.00 2.71
3396 3468 8.548880 AGATTGGTTATTACTAGCAGGACTTA 57.451 34.615 0.00 0.00 0.00 2.24
3417 3489 2.894387 GCTGAGGATGAGCGCACC 60.894 66.667 11.47 7.54 34.18 5.01
3469 3541 0.804364 TGGTTTAATGCTGCGAGCTG 59.196 50.000 0.00 0.00 42.97 4.24
3591 3663 1.664321 CCAAGGAGATGCTTGCTGGC 61.664 60.000 8.44 0.00 0.00 4.85
3637 3709 2.760634 TTCTTCACGATTGGCTGCTA 57.239 45.000 0.00 0.00 0.00 3.49
3639 3711 2.826428 TCTTCACGATTGGCTGCTATC 58.174 47.619 0.00 2.58 0.00 2.08
4146 4221 4.063998 TGGACGAGATGATTTCCATGAG 57.936 45.455 0.00 0.00 35.17 2.90
4296 4371 8.133024 TGATGCAAAGGGAAAGTACATATTTT 57.867 30.769 0.00 0.00 0.00 1.82
4404 4479 1.270550 CTTGGCAGGGATGACAAACAC 59.729 52.381 0.00 0.00 36.23 3.32
4426 4501 4.464244 ACTTTGCATACTGTCAGCTCTAGA 59.536 41.667 0.00 0.00 0.00 2.43
4548 4623 5.706369 AGGAGCTATACGTACTAACTGGATG 59.294 44.000 0.00 0.00 0.00 3.51
4616 4691 2.661709 CGGTGTGCTGTCAATTACAACG 60.662 50.000 0.29 0.29 45.91 4.10
4768 4964 3.001576 GCGTTCAAAGTCGCCAATC 57.998 52.632 0.00 0.00 45.54 2.67
4785 4981 5.390567 CGCCAATCTGTCTGTAACCTTTTAC 60.391 44.000 0.00 0.00 38.51 2.01
4823 5020 5.957771 TCCCATCAGAATACTAGCAACTT 57.042 39.130 0.00 0.00 0.00 2.66
4880 5089 3.914364 CGGCTTTGTTAGAAAACTGATGC 59.086 43.478 0.00 0.00 36.51 3.91
4882 5091 3.914364 GCTTTGTTAGAAAACTGATGCCG 59.086 43.478 0.00 0.00 36.51 5.69
5022 5236 7.879677 TGCTTTCTACATGATTCTTCTTCAGAA 59.120 33.333 0.00 0.00 46.01 3.02
5023 5237 8.174422 GCTTTCTACATGATTCTTCTTCAGAAC 58.826 37.037 0.00 0.00 44.70 3.01
5024 5238 8.553459 TTTCTACATGATTCTTCTTCAGAACC 57.447 34.615 0.00 0.00 44.70 3.62
5026 5240 5.246981 ACATGATTCTTCTTCAGAACCCA 57.753 39.130 0.00 0.00 44.70 4.51
5027 5241 5.634118 ACATGATTCTTCTTCAGAACCCAA 58.366 37.500 0.00 0.00 44.70 4.12
5028 5242 5.709164 ACATGATTCTTCTTCAGAACCCAAG 59.291 40.000 0.00 0.00 44.70 3.61
5029 5243 5.310409 TGATTCTTCTTCAGAACCCAAGT 57.690 39.130 0.00 0.00 44.70 3.16
5031 5245 4.771114 TTCTTCTTCAGAACCCAAGTGA 57.229 40.909 0.00 0.00 36.51 3.41
5032 5246 4.073293 TCTTCTTCAGAACCCAAGTGAC 57.927 45.455 0.00 0.00 0.00 3.67
5033 5247 2.930826 TCTTCAGAACCCAAGTGACC 57.069 50.000 0.00 0.00 0.00 4.02
5034 5248 2.408565 TCTTCAGAACCCAAGTGACCT 58.591 47.619 0.00 0.00 0.00 3.85
5045 5261 5.586877 ACCCAAGTGACCTCTATAAGTACA 58.413 41.667 0.00 0.00 0.00 2.90
5076 5292 9.783256 ACAAACACTGATAGTTTTAGTTCAAAC 57.217 29.630 0.00 0.00 37.10 2.93
5123 5339 9.664332 ATCATATGTTAGTCCAGATATTTCTGC 57.336 33.333 7.59 0.00 46.76 4.26
5124 5340 8.874156 TCATATGTTAGTCCAGATATTTCTGCT 58.126 33.333 7.59 3.67 46.76 4.24
5125 5341 9.499479 CATATGTTAGTCCAGATATTTCTGCTT 57.501 33.333 7.59 0.00 46.76 3.91
5126 5342 7.798596 ATGTTAGTCCAGATATTTCTGCTTG 57.201 36.000 7.59 0.00 46.76 4.01
5127 5343 5.586243 TGTTAGTCCAGATATTTCTGCTTGC 59.414 40.000 7.59 0.00 46.76 4.01
5128 5344 4.500499 AGTCCAGATATTTCTGCTTGCT 57.500 40.909 7.59 0.87 46.76 3.91
5129 5345 4.853007 AGTCCAGATATTTCTGCTTGCTT 58.147 39.130 7.59 0.00 46.76 3.91
5130 5346 5.994250 AGTCCAGATATTTCTGCTTGCTTA 58.006 37.500 7.59 0.00 46.76 3.09
5131 5347 5.819901 AGTCCAGATATTTCTGCTTGCTTAC 59.180 40.000 7.59 0.00 46.76 2.34
5145 5361 5.767665 TGCTTGCTTACAAAACATAGGAAGA 59.232 36.000 0.00 0.00 38.02 2.87
5151 5367 9.023962 TGCTTACAAAACATAGGAAGAATGAAT 57.976 29.630 0.00 0.00 0.00 2.57
5152 5368 9.860898 GCTTACAAAACATAGGAAGAATGAATT 57.139 29.630 0.00 0.00 0.00 2.17
5226 5442 9.368416 GGTGCTGACCCAGATATTCTATATATA 57.632 37.037 0.00 0.00 36.03 0.86
5229 5445 9.921637 GCTGACCCAGATATTCTATATATAAGC 57.078 37.037 0.00 0.00 32.44 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.078759 CCTCGCGAGGTTCACATGAC 61.079 60.000 40.77 0.00 43.61 3.06
1 2 1.215382 CCTCGCGAGGTTCACATGA 59.785 57.895 40.77 0.75 43.61 3.07
2 3 3.786101 CCTCGCGAGGTTCACATG 58.214 61.111 40.77 17.62 43.61 3.21
21 22 1.066303 CGGAGATATCTATGCGGAGGC 59.934 57.143 4.89 0.00 40.52 4.70
22 23 1.066303 GCGGAGATATCTATGCGGAGG 59.934 57.143 4.89 0.00 0.00 4.30
23 24 2.020720 AGCGGAGATATCTATGCGGAG 58.979 52.381 18.07 3.29 33.14 4.63
24 25 2.130272 AGCGGAGATATCTATGCGGA 57.870 50.000 18.07 0.00 33.14 5.54
25 26 2.946329 AGTAGCGGAGATATCTATGCGG 59.054 50.000 18.07 7.70 33.14 5.69
26 27 3.623510 TGAGTAGCGGAGATATCTATGCG 59.376 47.826 18.07 11.02 33.14 4.73
27 28 4.036262 CCTGAGTAGCGGAGATATCTATGC 59.964 50.000 16.99 16.99 0.00 3.14
28 29 5.432645 TCCTGAGTAGCGGAGATATCTATG 58.567 45.833 4.89 2.21 0.00 2.23
29 30 5.702065 TCCTGAGTAGCGGAGATATCTAT 57.298 43.478 4.89 0.00 0.00 1.98
38 39 2.829003 CGGCTCCTGAGTAGCGGA 60.829 66.667 0.00 0.00 41.39 5.54
39 40 3.905678 CCGGCTCCTGAGTAGCGG 61.906 72.222 0.00 0.00 41.03 5.52
40 41 4.577246 GCCGGCTCCTGAGTAGCG 62.577 72.222 22.15 0.00 41.03 4.26
41 42 4.228567 GGCCGGCTCCTGAGTAGC 62.229 72.222 28.56 0.41 39.33 3.58
42 43 2.060980 AAGGCCGGCTCCTGAGTAG 61.061 63.158 28.56 0.00 36.38 2.57
43 44 2.038975 AAGGCCGGCTCCTGAGTA 59.961 61.111 28.56 0.00 36.38 2.59
44 45 3.710722 CAAGGCCGGCTCCTGAGT 61.711 66.667 28.56 0.00 36.38 3.41
68 69 4.101448 CAAGACCTCCCTGGGGCG 62.101 72.222 14.00 5.63 39.91 6.13
69 70 3.732849 CCAAGACCTCCCTGGGGC 61.733 72.222 14.00 0.19 41.11 5.80
70 71 2.204151 ACCAAGACCTCCCTGGGG 60.204 66.667 14.00 2.42 41.11 4.96
71 72 1.842381 GACACCAAGACCTCCCTGGG 61.842 65.000 6.33 6.33 41.11 4.45
72 73 1.679898 GACACCAAGACCTCCCTGG 59.320 63.158 0.00 0.00 42.93 4.45
73 74 1.293498 CGACACCAAGACCTCCCTG 59.707 63.158 0.00 0.00 0.00 4.45
74 75 1.152312 ACGACACCAAGACCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
75 76 1.292541 GACGACACCAAGACCTCCC 59.707 63.158 0.00 0.00 0.00 4.30
76 77 1.292541 GGACGACACCAAGACCTCC 59.707 63.158 0.00 0.00 0.00 4.30
77 78 1.080705 CGGACGACACCAAGACCTC 60.081 63.158 0.00 0.00 0.00 3.85
78 79 3.048602 CGGACGACACCAAGACCT 58.951 61.111 0.00 0.00 0.00 3.85
79 80 2.737376 GCGGACGACACCAAGACC 60.737 66.667 0.00 0.00 0.00 3.85
80 81 2.737376 GGCGGACGACACCAAGAC 60.737 66.667 0.00 0.00 0.00 3.01
81 82 2.915659 AGGCGGACGACACCAAGA 60.916 61.111 0.00 0.00 0.00 3.02
82 83 2.432628 GAGGCGGACGACACCAAG 60.433 66.667 0.00 0.00 0.00 3.61
83 84 4.351938 CGAGGCGGACGACACCAA 62.352 66.667 0.00 0.00 0.00 3.67
119 120 0.318762 AGCAACAACTCGAGACCCTC 59.681 55.000 21.68 3.44 0.00 4.30
120 121 1.272769 GTAGCAACAACTCGAGACCCT 59.727 52.381 21.68 8.48 0.00 4.34
121 122 1.672145 GGTAGCAACAACTCGAGACCC 60.672 57.143 21.68 0.95 0.00 4.46
122 123 1.711206 GGTAGCAACAACTCGAGACC 58.289 55.000 21.68 9.76 0.00 3.85
123 124 1.068748 TCGGTAGCAACAACTCGAGAC 60.069 52.381 21.68 3.55 0.00 3.36
124 125 1.241165 TCGGTAGCAACAACTCGAGA 58.759 50.000 21.68 0.00 0.00 4.04
125 126 1.719780 GTTCGGTAGCAACAACTCGAG 59.280 52.381 11.84 11.84 0.00 4.04
126 127 1.603678 GGTTCGGTAGCAACAACTCGA 60.604 52.381 8.70 0.00 0.00 4.04
127 128 0.788391 GGTTCGGTAGCAACAACTCG 59.212 55.000 8.70 0.00 0.00 4.18
128 129 1.798813 CAGGTTCGGTAGCAACAACTC 59.201 52.381 8.70 0.00 0.00 3.01
129 130 1.542547 CCAGGTTCGGTAGCAACAACT 60.543 52.381 8.70 0.00 0.00 3.16
130 131 0.872388 CCAGGTTCGGTAGCAACAAC 59.128 55.000 8.70 1.24 0.00 3.32
131 132 0.250553 CCCAGGTTCGGTAGCAACAA 60.251 55.000 8.70 0.00 0.00 2.83
132 133 1.373435 CCCAGGTTCGGTAGCAACA 59.627 57.895 8.70 0.00 0.00 3.33
133 134 2.038837 GCCCAGGTTCGGTAGCAAC 61.039 63.158 0.00 0.00 0.00 4.17
134 135 2.349755 GCCCAGGTTCGGTAGCAA 59.650 61.111 0.00 0.00 0.00 3.91
135 136 3.712907 GGCCCAGGTTCGGTAGCA 61.713 66.667 0.00 0.00 0.00 3.49
136 137 1.692173 TATGGCCCAGGTTCGGTAGC 61.692 60.000 0.00 0.00 0.00 3.58
137 138 0.106149 GTATGGCCCAGGTTCGGTAG 59.894 60.000 0.00 0.00 0.00 3.18
138 139 1.339644 GGTATGGCCCAGGTTCGGTA 61.340 60.000 0.00 0.00 0.00 4.02
139 140 2.676265 GGTATGGCCCAGGTTCGGT 61.676 63.158 0.00 0.00 0.00 4.69
140 141 2.192175 GGTATGGCCCAGGTTCGG 59.808 66.667 0.00 0.00 0.00 4.30
141 142 2.203015 CGGTATGGCCCAGGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
142 143 2.192175 CCGGTATGGCCCAGGTTC 59.808 66.667 0.00 0.00 0.00 3.62
143 144 3.416880 CCCGGTATGGCCCAGGTT 61.417 66.667 0.00 0.00 35.87 3.50
151 152 1.891919 CATCAACGGCCCGGTATGG 60.892 63.158 8.57 0.00 37.55 2.74
152 153 1.891919 CCATCAACGGCCCGGTATG 60.892 63.158 8.57 7.85 0.00 2.39
153 154 2.040009 CTCCATCAACGGCCCGGTAT 62.040 60.000 8.57 0.00 0.00 2.73
154 155 2.684294 TCCATCAACGGCCCGGTA 60.684 61.111 8.57 0.00 0.00 4.02
155 156 4.096003 CTCCATCAACGGCCCGGT 62.096 66.667 8.57 0.00 0.00 5.28
158 159 4.424711 TGGCTCCATCAACGGCCC 62.425 66.667 0.00 0.00 43.50 5.80
159 160 3.134127 GTGGCTCCATCAACGGCC 61.134 66.667 0.00 0.00 44.31 6.13
160 161 3.499737 CGTGGCTCCATCAACGGC 61.500 66.667 0.00 0.00 0.00 5.68
161 162 2.047274 ACGTGGCTCCATCAACGG 60.047 61.111 0.00 0.00 0.00 4.44
162 163 2.390599 CCACGTGGCTCCATCAACG 61.391 63.158 24.02 0.00 0.00 4.10
163 164 3.578456 CCACGTGGCTCCATCAAC 58.422 61.111 24.02 0.00 0.00 3.18
185 186 2.670934 AGACTTGCCTGCTTGCGG 60.671 61.111 0.00 0.00 0.00 5.69
186 187 2.559840 CAGACTTGCCTGCTTGCG 59.440 61.111 0.00 0.00 0.00 4.85
187 188 2.633509 CCCAGACTTGCCTGCTTGC 61.634 63.158 0.00 0.00 32.97 4.01
188 189 0.036732 TACCCAGACTTGCCTGCTTG 59.963 55.000 0.00 0.00 32.97 4.01
189 190 0.036875 GTACCCAGACTTGCCTGCTT 59.963 55.000 0.00 0.00 32.97 3.91
190 191 0.838122 AGTACCCAGACTTGCCTGCT 60.838 55.000 0.00 0.00 32.97 4.24
191 192 0.391793 GAGTACCCAGACTTGCCTGC 60.392 60.000 0.00 0.00 32.97 4.85
192 193 0.250513 GGAGTACCCAGACTTGCCTG 59.749 60.000 0.00 0.00 34.14 4.85
193 194 2.685202 GGAGTACCCAGACTTGCCT 58.315 57.895 0.00 0.00 34.14 4.75
219 220 4.699522 GAGGTTTGCCGGCGTCCT 62.700 66.667 28.42 28.42 40.50 3.85
221 222 3.723348 GTGAGGTTTGCCGGCGTC 61.723 66.667 23.90 14.21 40.50 5.19
224 225 1.744320 AAAAGGTGAGGTTTGCCGGC 61.744 55.000 22.73 22.73 40.50 6.13
225 226 1.611519 TAAAAGGTGAGGTTTGCCGG 58.388 50.000 0.00 0.00 40.50 6.13
226 227 3.719173 TTTAAAAGGTGAGGTTTGCCG 57.281 42.857 0.00 0.00 40.50 5.69
227 228 6.425721 GGTAAATTTAAAAGGTGAGGTTTGCC 59.574 38.462 0.00 0.00 0.00 4.52
228 229 6.144886 CGGTAAATTTAAAAGGTGAGGTTTGC 59.855 38.462 0.00 0.00 0.00 3.68
229 230 7.427214 TCGGTAAATTTAAAAGGTGAGGTTTG 58.573 34.615 0.00 0.00 0.00 2.93
230 231 7.585579 TCGGTAAATTTAAAAGGTGAGGTTT 57.414 32.000 0.00 0.00 0.00 3.27
308 309 2.949177 TGGCTGGTAATTGACAGTGT 57.051 45.000 0.00 0.00 37.07 3.55
321 322 3.546020 CGTTGATTTACGCTTATGGCTGG 60.546 47.826 0.00 0.00 39.13 4.85
343 344 4.216257 ACACTCATAACCATCAAAGCACAC 59.784 41.667 0.00 0.00 0.00 3.82
380 381 2.711009 ACTGAGGTTTGGTCCTTGATGA 59.289 45.455 0.00 0.00 38.02 2.92
383 384 3.662759 AAACTGAGGTTTGGTCCTTGA 57.337 42.857 0.00 0.00 43.16 3.02
401 402 5.708736 TTATGAGATACCAAGGAGCCAAA 57.291 39.130 0.00 0.00 0.00 3.28
439 448 2.749076 TGAAAACATCGCCTCTCAATGG 59.251 45.455 0.00 0.00 0.00 3.16
468 477 1.220477 GCCTTGAGACTGAGCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
485 510 2.505118 GAGACTGAGCCGACACGC 60.505 66.667 0.00 0.00 0.00 5.34
487 512 1.135731 CGAGAGACTGAGCCGACAC 59.864 63.158 0.00 0.00 0.00 3.67
521 546 0.509929 CGGATGCACGCACATCATAG 59.490 55.000 17.19 6.83 46.81 2.23
524 549 1.634757 GAACGGATGCACGCACATCA 61.635 55.000 17.19 0.00 46.81 3.07
526 551 1.638388 CTGAACGGATGCACGCACAT 61.638 55.000 0.00 0.00 37.37 3.21
535 560 3.192422 ACACTCTCTTCTCTGAACGGATG 59.808 47.826 0.00 0.00 0.00 3.51
536 561 3.426615 ACACTCTCTTCTCTGAACGGAT 58.573 45.455 0.00 0.00 0.00 4.18
538 563 4.156922 ACATACACTCTCTTCTCTGAACGG 59.843 45.833 0.00 0.00 0.00 4.44
551 576 5.190992 TCACAAACACGTACATACACTCT 57.809 39.130 0.00 0.00 0.00 3.24
568 593 0.808125 ACACAAGCAAACGCTCACAA 59.192 45.000 0.00 0.00 39.40 3.33
583 608 5.941058 TCTTTTTGAGAAACAGGTACACACA 59.059 36.000 0.00 0.00 0.00 3.72
587 612 7.931578 TCTTTCTTTTTGAGAAACAGGTACA 57.068 32.000 0.00 0.00 46.69 2.90
590 615 8.138074 GCTAATCTTTCTTTTTGAGAAACAGGT 58.862 33.333 0.00 0.00 46.69 4.00
591 616 7.324616 CGCTAATCTTTCTTTTTGAGAAACAGG 59.675 37.037 0.00 0.00 46.69 4.00
592 617 7.324616 CCGCTAATCTTTCTTTTTGAGAAACAG 59.675 37.037 0.00 0.00 46.69 3.16
594 619 6.088217 GCCGCTAATCTTTCTTTTTGAGAAAC 59.912 38.462 0.00 0.00 46.69 2.78
597 622 4.156008 GGCCGCTAATCTTTCTTTTTGAGA 59.844 41.667 0.00 0.00 0.00 3.27
598 623 4.415735 GGCCGCTAATCTTTCTTTTTGAG 58.584 43.478 0.00 0.00 0.00 3.02
599 624 3.119990 CGGCCGCTAATCTTTCTTTTTGA 60.120 43.478 14.67 0.00 0.00 2.69
600 625 3.171277 CGGCCGCTAATCTTTCTTTTTG 58.829 45.455 14.67 0.00 0.00 2.44
601 626 2.817844 ACGGCCGCTAATCTTTCTTTTT 59.182 40.909 28.58 0.00 0.00 1.94
602 627 2.418976 GACGGCCGCTAATCTTTCTTTT 59.581 45.455 28.58 0.00 0.00 2.27
627 652 5.548706 TTATTTTGTGGCGTACGCTATTT 57.451 34.783 36.24 18.02 41.60 1.40
681 708 1.252904 TTAGTGGCCTACGCTCCGTT 61.253 55.000 3.32 0.00 41.54 4.44
687 714 2.381725 ACTTTCTTAGTGGCCTACGC 57.618 50.000 3.32 0.00 35.19 4.42
698 725 5.646360 GCTGTATGTTGGCCTAACTTTCTTA 59.354 40.000 3.32 0.00 40.05 2.10
726 753 4.530946 TGAACTGGGTCTTCTTTACTAGGG 59.469 45.833 0.00 0.00 0.00 3.53
729 756 6.934645 CACAATGAACTGGGTCTTCTTTACTA 59.065 38.462 0.00 0.00 0.00 1.82
730 757 5.765182 CACAATGAACTGGGTCTTCTTTACT 59.235 40.000 0.00 0.00 0.00 2.24
731 758 5.531287 ACACAATGAACTGGGTCTTCTTTAC 59.469 40.000 0.00 0.00 0.00 2.01
732 759 5.690865 ACACAATGAACTGGGTCTTCTTTA 58.309 37.500 0.00 0.00 0.00 1.85
737 764 3.631250 ACAACACAATGAACTGGGTCTT 58.369 40.909 0.00 0.00 29.33 3.01
740 767 2.693074 GGAACAACACAATGAACTGGGT 59.307 45.455 0.00 0.00 33.12 4.51
762 805 5.771165 AGTAATAAAGGCCGAAACAAAAGGA 59.229 36.000 0.00 0.00 0.00 3.36
769 812 5.628134 CAGACAAGTAATAAAGGCCGAAAC 58.372 41.667 0.00 0.00 0.00 2.78
771 814 3.687698 GCAGACAAGTAATAAAGGCCGAA 59.312 43.478 0.00 0.00 0.00 4.30
773 816 2.354821 GGCAGACAAGTAATAAAGGCCG 59.645 50.000 0.00 0.00 0.00 6.13
774 817 3.378427 CAGGCAGACAAGTAATAAAGGCC 59.622 47.826 0.00 0.00 39.14 5.19
775 818 4.010349 ACAGGCAGACAAGTAATAAAGGC 58.990 43.478 0.00 0.00 0.00 4.35
776 819 4.396166 CCACAGGCAGACAAGTAATAAAGG 59.604 45.833 0.00 0.00 0.00 3.11
777 820 4.396166 CCCACAGGCAGACAAGTAATAAAG 59.604 45.833 0.00 0.00 0.00 1.85
778 821 4.331968 CCCACAGGCAGACAAGTAATAAA 58.668 43.478 0.00 0.00 0.00 1.40
779 822 3.950397 CCCACAGGCAGACAAGTAATAA 58.050 45.455 0.00 0.00 0.00 1.40
781 824 2.496899 CCCACAGGCAGACAAGTAAT 57.503 50.000 0.00 0.00 0.00 1.89
954 997 3.793144 GGCAGAAACCAGCTCGCG 61.793 66.667 0.00 0.00 0.00 5.87
957 1000 2.328099 CCACGGCAGAAACCAGCTC 61.328 63.158 0.00 0.00 0.00 4.09
958 1001 2.281761 CCACGGCAGAAACCAGCT 60.282 61.111 0.00 0.00 0.00 4.24
1239 1284 9.410556 CAAAACTTATCCAAAATTCTGTCGAAT 57.589 29.630 0.00 0.00 41.53 3.34
1240 1285 7.865385 CCAAAACTTATCCAAAATTCTGTCGAA 59.135 33.333 0.00 0.00 0.00 3.71
1252 1297 4.320348 CCGCGTAAACCAAAACTTATCCAA 60.320 41.667 4.92 0.00 0.00 3.53
1297 1342 7.556844 TCACTGACCAGAATTAAACTCTATCC 58.443 38.462 3.76 0.00 0.00 2.59
1300 1345 9.052759 GTTTTCACTGACCAGAATTAAACTCTA 57.947 33.333 3.76 0.00 0.00 2.43
1308 1353 6.935208 GGTACTAGTTTTCACTGACCAGAATT 59.065 38.462 0.00 0.00 34.19 2.17
1341 1387 0.389426 GGTTACGATGTGACAGGCGT 60.389 55.000 17.80 17.80 40.42 5.68
1363 1409 5.770162 TCCTTCAGTCCCTTCAATTTCTTTC 59.230 40.000 0.00 0.00 0.00 2.62
1367 1413 5.316987 TCTTCCTTCAGTCCCTTCAATTTC 58.683 41.667 0.00 0.00 0.00 2.17
1371 1421 2.039084 GCTCTTCCTTCAGTCCCTTCAA 59.961 50.000 0.00 0.00 0.00 2.69
1384 1434 2.560105 GGCAAAAATGTGAGCTCTTCCT 59.440 45.455 16.19 0.00 0.00 3.36
1385 1435 2.297033 TGGCAAAAATGTGAGCTCTTCC 59.703 45.455 16.19 3.49 0.00 3.46
1389 1439 5.220529 GCATATTTGGCAAAAATGTGAGCTC 60.221 40.000 17.70 6.82 32.63 4.09
1395 1445 3.611986 CGACGCATATTTGGCAAAAATGT 59.388 39.130 17.70 11.00 0.00 2.71
1396 1446 3.611986 ACGACGCATATTTGGCAAAAATG 59.388 39.130 17.70 7.96 0.00 2.32
1397 1447 3.843999 ACGACGCATATTTGGCAAAAAT 58.156 36.364 17.70 3.89 0.00 1.82
1398 1448 3.290308 ACGACGCATATTTGGCAAAAA 57.710 38.095 17.70 0.00 0.00 1.94
1399 1449 2.999507 ACGACGCATATTTGGCAAAA 57.000 40.000 17.70 7.00 0.00 2.44
1400 1450 2.999507 AACGACGCATATTTGGCAAA 57.000 40.000 16.01 16.01 0.00 3.68
1401 1451 2.999507 AAACGACGCATATTTGGCAA 57.000 40.000 0.00 0.00 0.00 4.52
1402 1452 2.414824 GGAAAACGACGCATATTTGGCA 60.415 45.455 0.00 0.00 0.00 4.92
1403 1453 2.159435 AGGAAAACGACGCATATTTGGC 60.159 45.455 0.00 0.00 0.00 4.52
1404 1454 3.757745 AGGAAAACGACGCATATTTGG 57.242 42.857 0.00 0.00 0.00 3.28
1405 1455 8.730427 GTTTATTAGGAAAACGACGCATATTTG 58.270 33.333 0.00 0.00 0.00 2.32
1406 1456 8.671028 AGTTTATTAGGAAAACGACGCATATTT 58.329 29.630 0.00 0.00 40.86 1.40
1407 1457 8.205131 AGTTTATTAGGAAAACGACGCATATT 57.795 30.769 0.00 0.00 40.86 1.28
1408 1458 7.781548 AGTTTATTAGGAAAACGACGCATAT 57.218 32.000 0.00 0.00 40.86 1.78
1409 1459 7.043192 GCTAGTTTATTAGGAAAACGACGCATA 60.043 37.037 0.00 0.00 40.86 3.14
1410 1460 6.238022 GCTAGTTTATTAGGAAAACGACGCAT 60.238 38.462 0.00 0.00 40.86 4.73
1411 1461 5.062558 GCTAGTTTATTAGGAAAACGACGCA 59.937 40.000 0.00 0.00 40.86 5.24
1412 1462 5.487581 GCTAGTTTATTAGGAAAACGACGC 58.512 41.667 0.00 0.00 40.86 5.19
1415 1465 7.825270 TGATTGGCTAGTTTATTAGGAAAACGA 59.175 33.333 0.00 0.00 40.86 3.85
1446 1497 7.765695 AATCTTTCAACCACACATACTGAAT 57.234 32.000 0.00 0.00 0.00 2.57
1449 1500 7.672983 AGTAATCTTTCAACCACACATACTG 57.327 36.000 0.00 0.00 0.00 2.74
1451 1502 8.773404 ACTAGTAATCTTTCAACCACACATAC 57.227 34.615 0.00 0.00 0.00 2.39
1453 1504 9.216117 GTAACTAGTAATCTTTCAACCACACAT 57.784 33.333 0.00 0.00 0.00 3.21
1455 1506 7.148689 CGGTAACTAGTAATCTTTCAACCACAC 60.149 40.741 0.00 0.00 0.00 3.82
1456 1507 6.869913 CGGTAACTAGTAATCTTTCAACCACA 59.130 38.462 0.00 0.00 0.00 4.17
1457 1508 6.870439 ACGGTAACTAGTAATCTTTCAACCAC 59.130 38.462 0.00 0.00 0.00 4.16
1458 1509 6.996509 ACGGTAACTAGTAATCTTTCAACCA 58.003 36.000 0.00 0.00 0.00 3.67
1475 1526 4.868171 TGCATGAACAGATAAGACGGTAAC 59.132 41.667 0.00 0.00 0.00 2.50
1476 1527 5.079689 TGCATGAACAGATAAGACGGTAA 57.920 39.130 0.00 0.00 0.00 2.85
1478 1529 3.610040 TGCATGAACAGATAAGACGGT 57.390 42.857 0.00 0.00 0.00 4.83
1479 1530 6.128445 GGATTATGCATGAACAGATAAGACGG 60.128 42.308 10.16 0.00 0.00 4.79
1481 1532 7.734924 TGGATTATGCATGAACAGATAAGAC 57.265 36.000 10.16 0.00 0.00 3.01
1486 1538 5.303333 TGCAATGGATTATGCATGAACAGAT 59.697 36.000 10.16 0.00 46.87 2.90
1487 1539 4.645588 TGCAATGGATTATGCATGAACAGA 59.354 37.500 10.16 0.00 46.87 3.41
1497 1549 6.400568 ACTTGGAAGTTTGCAATGGATTATG 58.599 36.000 0.00 0.00 37.86 1.90
1498 1550 6.211184 TGACTTGGAAGTTTGCAATGGATTAT 59.789 34.615 0.00 0.00 39.88 1.28
1507 1559 4.206375 TGAGAATGACTTGGAAGTTTGCA 58.794 39.130 0.00 0.00 39.88 4.08
1513 1565 9.731819 CAATATCAATTGAGAATGACTTGGAAG 57.268 33.333 14.54 0.00 44.50 3.46
1518 1570 8.749026 AGAGCAATATCAATTGAGAATGACTT 57.251 30.769 19.72 6.22 44.50 3.01
1549 1602 7.120726 GGTGTTTCTAACCTGCACATTATTAGT 59.879 37.037 0.00 0.00 34.66 2.24
1552 1605 5.106317 CGGTGTTTCTAACCTGCACATTATT 60.106 40.000 0.00 0.00 35.39 1.40
1567 1620 2.649531 TCAATGGGTTCGGTGTTTCT 57.350 45.000 0.00 0.00 0.00 2.52
1602 1655 5.989777 GCATCCGTAGTACAAGTTGGAATAT 59.010 40.000 7.96 0.00 0.00 1.28
1686 1740 3.603158 TGCCGCTCTTCACATAGTTTA 57.397 42.857 0.00 0.00 0.00 2.01
1689 1743 2.472695 TTTGCCGCTCTTCACATAGT 57.527 45.000 0.00 0.00 0.00 2.12
1690 1744 4.361451 AATTTTGCCGCTCTTCACATAG 57.639 40.909 0.00 0.00 0.00 2.23
1691 1745 4.782019 AAATTTTGCCGCTCTTCACATA 57.218 36.364 0.00 0.00 0.00 2.29
1692 1746 3.665745 AAATTTTGCCGCTCTTCACAT 57.334 38.095 0.00 0.00 0.00 3.21
1704 1760 8.593492 AGAAACCTCAAGATTGTAAATTTTGC 57.407 30.769 0.00 0.00 0.00 3.68
1748 1804 2.044806 AACTGTTCTCCGGCACAGCT 62.045 55.000 21.61 11.59 43.72 4.24
1967 2023 3.199508 CCTGTCATCCTTCCAGAATGAGT 59.800 47.826 0.00 0.00 39.69 3.41
2063 2119 5.526115 AGAATTCACTGCAAAGAACACATG 58.474 37.500 8.44 0.00 0.00 3.21
2071 2127 5.998454 ATATCGGAGAATTCACTGCAAAG 57.002 39.130 8.44 0.00 43.58 2.77
2079 2135 6.183360 CCGTGTCAAAAATATCGGAGAATTCA 60.183 38.462 8.44 0.00 43.58 2.57
2196 2252 2.614057 GGATTTTCTAGGTGTCCGCATG 59.386 50.000 0.00 0.00 0.00 4.06
2203 2259 3.266772 TCAGGCATGGATTTTCTAGGTGT 59.733 43.478 0.00 0.00 0.00 4.16
2314 2375 9.770503 AATAGTAGCATGTACTCGATAAATACG 57.229 33.333 10.12 0.00 0.00 3.06
2437 2498 9.632638 ACTAAAGCAGATGAATACAATGGTTAT 57.367 29.630 0.00 0.00 36.89 1.89
2438 2499 8.892723 CACTAAAGCAGATGAATACAATGGTTA 58.107 33.333 0.00 0.00 36.89 2.85
2536 2599 9.653287 ATGTATTCTCTTAACGAACAAATGAGA 57.347 29.630 0.00 0.00 0.00 3.27
2547 2610 7.171678 GGGAAATCAGGATGTATTCTCTTAACG 59.828 40.741 0.00 0.00 37.40 3.18
2589 2660 7.109501 TCATATACACTGCCAATTAACACAGT 58.890 34.615 0.00 0.00 43.92 3.55
2649 2720 9.664332 GCTGTATTCATATATTCCTCAGTTCAT 57.336 33.333 0.00 0.00 0.00 2.57
2688 2759 4.670227 AAATTTTCGACAGCTGAGCTAC 57.330 40.909 23.35 3.53 36.40 3.58
2748 2819 5.462398 GCAATTCTTCATCAAGATCATTGGC 59.538 40.000 6.06 0.00 37.35 4.52
2855 2926 2.757314 TCGTGAGCTCATGACTCTCAAT 59.243 45.455 30.49 0.00 38.42 2.57
3113 3184 8.889717 GTTGAGAATTATTCGATAGGAAAACCA 58.110 33.333 0.00 0.00 38.36 3.67
3171 3242 5.712152 AAGAGCCAACAATAAAGGAAGTG 57.288 39.130 0.00 0.00 0.00 3.16
3266 3338 7.692460 AGTAAAATCATCATCTCAAACAGCA 57.308 32.000 0.00 0.00 0.00 4.41
3295 3367 9.754382 AAATCCAATCACTGCAAATATCATAAC 57.246 29.630 0.00 0.00 0.00 1.89
3396 3468 1.449246 GCGCTCATCCTCAGCACTT 60.449 57.895 0.00 0.00 36.61 3.16
3417 3489 4.402474 GGAGTTAATGGACATTTTCCCCTG 59.598 45.833 2.53 0.00 45.17 4.45
3469 3541 5.007234 GGTAAGTTTCATTGCCAAAACCAAC 59.993 40.000 0.00 0.00 36.29 3.77
3591 3663 4.274459 GGAAGGAATGGTTTCAGATCATCG 59.726 45.833 0.00 0.00 33.23 3.84
3637 3709 6.809869 TCTCATCACATACAATGAAGTCGAT 58.190 36.000 0.00 0.00 31.81 3.59
3639 3711 6.020041 CACTCTCATCACATACAATGAAGTCG 60.020 42.308 0.00 0.00 31.81 4.18
3687 3759 0.105760 ACACCTTGGCCATGTTTCCA 60.106 50.000 6.09 0.00 0.00 3.53
3955 4030 5.773176 TGTATCGCCTACAGATTTGATAGGA 59.227 40.000 12.89 0.00 38.20 2.94
4039 4114 0.478942 TCCCAACCCGTTTGATTCCA 59.521 50.000 0.00 0.00 37.39 3.53
4200 4275 5.985781 TGAGATAACAAGTTTCGAGTTTGC 58.014 37.500 5.78 0.00 0.00 3.68
4296 4371 4.842531 TCCATCATCCTCTTAACTTGCA 57.157 40.909 0.00 0.00 0.00 4.08
4345 4420 2.046892 GAGCTGACGTGCCATGGT 60.047 61.111 14.67 0.00 0.00 3.55
4348 4423 0.179702 ATCATGAGCTGACGTGCCAT 59.820 50.000 0.09 0.00 36.48 4.40
4404 4479 5.003692 TCTAGAGCTGACAGTATGCAAAG 57.996 43.478 3.99 0.00 42.53 2.77
4548 4623 4.503910 TCACAGTTACAGGCATGACATAC 58.496 43.478 4.84 0.00 0.00 2.39
4768 4964 5.469084 GTCCAAGGTAAAAGGTTACAGACAG 59.531 44.000 0.00 0.00 41.31 3.51
4785 4981 2.875296 TGGGAAAAGACATGTCCAAGG 58.125 47.619 22.21 0.00 32.70 3.61
4823 5020 7.012327 GCAACATGGCATAAGACAGAGTATTAA 59.988 37.037 0.00 0.00 35.18 1.40
4836 5033 1.404748 CATCCGTGCAACATGGCATAA 59.595 47.619 0.00 0.00 46.92 1.90
4880 5089 9.811655 CATAATTTGCATAGTTAATCTGTACGG 57.188 33.333 0.00 0.00 0.00 4.02
4947 5156 6.569226 CGATCCTAATGAATGAAGAATTGGGC 60.569 42.308 0.00 0.00 33.30 5.36
5022 5236 5.586877 TGTACTTATAGAGGTCACTTGGGT 58.413 41.667 0.00 0.00 0.00 4.51
5023 5237 6.540438 TTGTACTTATAGAGGTCACTTGGG 57.460 41.667 0.00 0.00 0.00 4.12
5024 5238 7.612677 ACTTTGTACTTATAGAGGTCACTTGG 58.387 38.462 0.00 0.00 0.00 3.61
5026 5240 9.305555 TGTACTTTGTACTTATAGAGGTCACTT 57.694 33.333 8.94 0.00 0.00 3.16
5027 5241 8.874744 TGTACTTTGTACTTATAGAGGTCACT 57.125 34.615 8.94 0.00 0.00 3.41
5028 5242 9.918630 TTTGTACTTTGTACTTATAGAGGTCAC 57.081 33.333 8.94 0.00 0.00 3.67
5029 5243 9.918630 GTTTGTACTTTGTACTTATAGAGGTCA 57.081 33.333 8.94 0.00 0.00 4.02
5031 5245 9.702494 GTGTTTGTACTTTGTACTTATAGAGGT 57.298 33.333 8.94 0.00 0.00 3.85
5032 5246 9.924650 AGTGTTTGTACTTTGTACTTATAGAGG 57.075 33.333 8.94 0.00 0.00 3.69
5117 5333 6.264292 TCCTATGTTTTGTAAGCAAGCAGAAA 59.736 34.615 0.00 0.00 35.82 2.52
5118 5334 5.767665 TCCTATGTTTTGTAAGCAAGCAGAA 59.232 36.000 0.00 0.00 35.82 3.02
5119 5335 5.312895 TCCTATGTTTTGTAAGCAAGCAGA 58.687 37.500 0.00 0.00 35.82 4.26
5120 5336 5.627499 TCCTATGTTTTGTAAGCAAGCAG 57.373 39.130 0.00 0.00 35.82 4.24
5121 5337 5.767665 TCTTCCTATGTTTTGTAAGCAAGCA 59.232 36.000 0.00 0.00 35.82 3.91
5122 5338 6.254281 TCTTCCTATGTTTTGTAAGCAAGC 57.746 37.500 0.00 0.00 35.82 4.01
5123 5339 8.514594 TCATTCTTCCTATGTTTTGTAAGCAAG 58.485 33.333 0.00 0.00 35.82 4.01
5124 5340 8.402798 TCATTCTTCCTATGTTTTGTAAGCAA 57.597 30.769 0.00 0.00 0.00 3.91
5125 5341 7.994425 TCATTCTTCCTATGTTTTGTAAGCA 57.006 32.000 0.00 0.00 0.00 3.91
5126 5342 9.860898 AATTCATTCTTCCTATGTTTTGTAAGC 57.139 29.630 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.