Multiple sequence alignment - TraesCS2D01G409900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G409900 chr2D 100.000 3807 0 0 1 3807 524562783 524566589 0.000000e+00 7031
1 TraesCS2D01G409900 chr2B 92.008 3366 157 44 1 3295 620644170 620640846 0.000000e+00 4623
2 TraesCS2D01G409900 chr2B 96.812 345 9 2 3463 3805 620640387 620640043 3.300000e-160 575
3 TraesCS2D01G409900 chr2B 94.022 184 9 1 3290 3471 620640726 620640543 1.040000e-70 278
4 TraesCS2D01G409900 chr2A 92.756 1629 65 24 617 2207 670218668 670220281 0.000000e+00 2305
5 TraesCS2D01G409900 chr2A 93.269 1560 62 16 2274 3807 670220317 670221859 0.000000e+00 2259
6 TraesCS2D01G409900 chr2A 87.109 256 11 10 1 238 670218301 670218552 1.740000e-68 270
7 TraesCS2D01G409900 chr7D 83.626 171 23 5 2026 2194 403645306 403645139 5.090000e-34 156
8 TraesCS2D01G409900 chr7B 82.456 171 25 5 2026 2194 412903061 412902894 1.100000e-30 145
9 TraesCS2D01G409900 chr7A 82.456 171 25 5 2026 2194 462301470 462301303 1.100000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G409900 chr2D 524562783 524566589 3806 False 7031.000000 7031 100.000000 1 3807 1 chr2D.!!$F1 3806
1 TraesCS2D01G409900 chr2B 620640043 620644170 4127 True 1825.333333 4623 94.280667 1 3805 3 chr2B.!!$R1 3804
2 TraesCS2D01G409900 chr2A 670218301 670221859 3558 False 1611.333333 2305 91.044667 1 3807 3 chr2A.!!$F1 3806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 741 0.249868 TTTGGTGCACTCCAGACTCG 60.250 55.0 17.98 0.0 38.80 4.18 F
1572 1629 0.179145 GTGGTCCATGGACGTACGAG 60.179 60.0 33.24 5.9 45.41 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 2366 0.861837 GCATGAGCTACCACGTATGC 59.138 55.0 0.0 0.38 37.91 3.14 R
2811 2925 0.546122 TGGTGCTGGAAACTGTCTGT 59.454 50.0 0.0 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.472044 TGTTGCTGTTGGTGCTCCTA 59.528 50.000 6.34 0.00 34.23 2.94
240 265 6.651643 ACATGCGTTTTCTGTTTGGTACTATA 59.348 34.615 0.00 0.00 0.00 1.31
241 266 6.470557 TGCGTTTTCTGTTTGGTACTATAC 57.529 37.500 0.00 0.00 0.00 1.47
245 270 7.507304 CGTTTTCTGTTTGGTACTATACACTG 58.493 38.462 0.00 0.00 0.00 3.66
291 316 1.405105 GTGAAAACCACAGCTGCTGAA 59.595 47.619 34.28 7.62 45.03 3.02
331 356 4.100963 ACTGATGTGTGTGTAAAGAGGTCA 59.899 41.667 0.00 0.00 0.00 4.02
335 360 2.542595 GTGTGTGTAAAGAGGTCAACGG 59.457 50.000 0.00 0.00 0.00 4.44
336 361 2.140717 GTGTGTAAAGAGGTCAACGGG 58.859 52.381 0.00 0.00 0.00 5.28
371 396 7.546667 GGATCAATTGTTCAGTGCAAAATATGT 59.453 33.333 16.38 0.00 0.00 2.29
408 433 8.611051 AAAGAGACATTATAGGGTTCACTAGT 57.389 34.615 0.00 0.00 0.00 2.57
413 438 7.285858 AGACATTATAGGGTTCACTAGTGAGTC 59.714 40.741 23.97 21.14 41.13 3.36
417 442 4.054359 AGGGTTCACTAGTGAGTCTGAT 57.946 45.455 23.97 8.31 41.13 2.90
460 485 1.922447 TGAACTTATGGGCAGTGGGAT 59.078 47.619 0.00 0.00 0.00 3.85
464 489 2.376518 ACTTATGGGCAGTGGGATATGG 59.623 50.000 0.00 0.00 0.00 2.74
494 519 3.733344 TAGATTGCCGGCCGCTCAC 62.733 63.158 26.77 9.32 38.78 3.51
507 532 0.805322 CGCTCACTCATCAGGTCTGC 60.805 60.000 0.00 0.00 0.00 4.26
542 567 7.659390 CCCTCCTCTTGAGCTTAAATATTAGTG 59.341 40.741 0.00 0.00 39.98 2.74
670 703 1.978617 AAAACTGGCCGCTCCATGG 60.979 57.895 4.97 4.97 45.50 3.66
705 738 1.230324 GACTTTGGTGCACTCCAGAC 58.770 55.000 17.98 6.61 38.80 3.51
708 741 0.249868 TTTGGTGCACTCCAGACTCG 60.250 55.000 17.98 0.00 38.80 4.18
739 772 0.750249 TCCATTATTCGCTCCTCGCA 59.250 50.000 0.00 0.00 39.08 5.10
744 777 0.317854 TATTCGCTCCTCGCATCGTG 60.318 55.000 0.00 0.00 39.08 4.35
813 849 1.611519 AAGAGCCTACCTAGCTAGCG 58.388 55.000 15.74 11.00 41.75 4.26
836 872 1.410882 GCTCTCAGGGTCTCACCATAC 59.589 57.143 0.00 0.00 41.02 2.39
870 906 2.634453 TGCATGTGAAGAAGGTGAGAGA 59.366 45.455 0.00 0.00 0.00 3.10
927 963 1.667830 GCAAGCTAGGCACACACGA 60.668 57.895 5.48 0.00 0.00 4.35
928 964 1.630244 GCAAGCTAGGCACACACGAG 61.630 60.000 5.48 0.00 0.00 4.18
939 975 2.610433 CACACACGAGCACACAGATAT 58.390 47.619 0.00 0.00 0.00 1.63
1200 1236 4.767255 CAGCAGGCCGTGGACTCC 62.767 72.222 0.00 0.00 0.00 3.85
1324 1378 3.193691 CCGAGCTTTCTTTCCTGACTAGA 59.806 47.826 0.00 0.00 0.00 2.43
1325 1379 4.170256 CGAGCTTTCTTTCCTGACTAGAC 58.830 47.826 0.00 0.00 0.00 2.59
1326 1380 4.082463 CGAGCTTTCTTTCCTGACTAGACT 60.082 45.833 0.00 0.00 0.00 3.24
1328 1382 4.020662 AGCTTTCTTTCCTGACTAGACTGG 60.021 45.833 11.06 11.06 0.00 4.00
1329 1383 4.262678 GCTTTCTTTCCTGACTAGACTGGT 60.263 45.833 15.55 0.00 0.00 4.00
1331 1385 5.888982 TTCTTTCCTGACTAGACTGGTTT 57.111 39.130 15.55 0.00 0.00 3.27
1332 1386 6.989155 TTCTTTCCTGACTAGACTGGTTTA 57.011 37.500 15.55 3.26 0.00 2.01
1563 1620 2.436646 GTCGCCAGTGGTCCATGG 60.437 66.667 11.74 4.97 39.73 3.66
1572 1629 0.179145 GTGGTCCATGGACGTACGAG 60.179 60.000 33.24 5.90 45.41 4.18
1727 1805 2.029288 ACAAGCCACACATCTCGCG 61.029 57.895 0.00 0.00 0.00 5.87
1784 1866 6.750039 TCCTGTTCGTTTTGAGATTTTGAAAC 59.250 34.615 0.00 0.00 0.00 2.78
1966 2062 2.034842 CGACTTGACTGACGTTGTGTTC 60.035 50.000 0.00 0.00 0.00 3.18
1985 2081 7.671302 TGTGTTCCTATCTATCTAATGGCTTC 58.329 38.462 0.00 0.00 0.00 3.86
2207 2303 1.135083 CCTCTACAAGGTGCGTACTGG 60.135 57.143 3.01 0.00 40.67 4.00
2209 2305 2.751259 CTCTACAAGGTGCGTACTGGTA 59.249 50.000 3.01 3.41 0.00 3.25
2211 2307 1.335145 ACAAGGTGCGTACTGGTACT 58.665 50.000 3.01 0.00 34.04 2.73
2240 2336 2.674852 GCACATATATATGCAGCGCACT 59.325 45.455 20.46 0.00 43.04 4.40
2241 2337 3.865164 GCACATATATATGCAGCGCACTA 59.135 43.478 20.46 0.00 43.04 2.74
2257 2353 2.868583 GCACTATGGCACACACATAGAG 59.131 50.000 16.68 11.10 46.77 2.43
2263 2359 4.551702 TGGCACACACATAGAGTACATT 57.448 40.909 0.00 0.00 0.00 2.71
2264 2360 5.669164 TGGCACACACATAGAGTACATTA 57.331 39.130 0.00 0.00 0.00 1.90
2265 2361 5.416083 TGGCACACACATAGAGTACATTAC 58.584 41.667 0.00 0.00 0.00 1.89
2266 2362 5.046950 TGGCACACACATAGAGTACATTACA 60.047 40.000 0.00 0.00 0.00 2.41
2267 2363 6.049149 GGCACACACATAGAGTACATTACAT 58.951 40.000 0.00 0.00 0.00 2.29
2268 2364 6.018751 GGCACACACATAGAGTACATTACATG 60.019 42.308 0.00 0.00 0.00 3.21
2269 2365 6.535150 GCACACACATAGAGTACATTACATGT 59.465 38.462 2.69 2.69 46.92 3.21
2270 2366 7.464577 GCACACACATAGAGTACATTACATGTG 60.465 40.741 9.11 17.32 45.45 3.21
2271 2367 6.535150 ACACACATAGAGTACATTACATGTGC 59.465 38.462 9.11 4.34 44.40 4.57
2272 2368 6.534793 CACACATAGAGTACATTACATGTGCA 59.465 38.462 9.11 0.00 46.52 4.57
2559 2673 5.869888 GCAACAAGAGCATGTAACTACTACT 59.130 40.000 0.00 0.00 32.02 2.57
2560 2674 7.033791 GCAACAAGAGCATGTAACTACTACTA 58.966 38.462 0.00 0.00 32.02 1.82
2589 2703 8.360390 CCACTACTCTACTGCATACATATTCAA 58.640 37.037 0.00 0.00 0.00 2.69
2674 2788 1.143969 CGGCGTTCTTCGGGATGTAC 61.144 60.000 0.00 0.00 40.26 2.90
2676 2790 1.278238 GCGTTCTTCGGGATGTACAG 58.722 55.000 0.33 0.00 40.26 2.74
2779 2893 1.901650 GCAAGAGCTTCGTCAACGGG 61.902 60.000 2.31 0.00 37.63 5.28
2811 2925 2.965147 TCACACCAGATGTCTGAACTCA 59.035 45.455 11.47 0.00 46.59 3.41
2881 2998 8.929746 CATACTATACATCACAAGCATACAAGG 58.070 37.037 0.00 0.00 0.00 3.61
3039 3162 8.850454 TGTAATCTTCAAAAACTAAACAGCAC 57.150 30.769 0.00 0.00 0.00 4.40
3040 3163 8.462811 TGTAATCTTCAAAAACTAAACAGCACA 58.537 29.630 0.00 0.00 0.00 4.57
3049 3172 7.935338 AAAACTAAACAGCACAGATGAATTG 57.065 32.000 0.00 0.00 0.00 2.32
3064 3187 1.607148 GAATTGGTTATACGCCTGCCC 59.393 52.381 0.00 0.00 0.00 5.36
3083 3206 3.119245 GCCCATATATGATGCTTTGCAGG 60.119 47.826 14.54 3.91 43.65 4.85
3106 3229 3.760684 GGACAGTAACTCTTTCGAGGGTA 59.239 47.826 0.00 0.00 41.71 3.69
3121 3244 5.812286 TCGAGGGTACATGTATATAGCTCA 58.188 41.667 9.18 0.00 0.00 4.26
3140 3263 1.135972 CAACGCTGCTTCATGTGGTAC 60.136 52.381 0.00 0.00 0.00 3.34
3191 3314 1.263484 CATATTTCTGCAGCAGCTCGG 59.737 52.381 18.43 1.12 42.74 4.63
3279 3402 5.804473 CACTCAACTTGCAAACAACATACAA 59.196 36.000 0.00 0.00 0.00 2.41
3337 3592 9.675464 TGGTTAATAAGGTACCAAGATGTAAAG 57.325 33.333 15.94 0.00 38.92 1.85
3455 3710 3.243168 GCATGCATGTCGGTGTATTTCAT 60.243 43.478 26.79 0.00 0.00 2.57
3529 3948 8.825745 GCCAATGAATTTTCTCTTTTGTTAACA 58.174 29.630 3.59 3.59 0.00 2.41
3565 3984 7.437713 TTCCCACTGTACATATCTTGAAGAT 57.562 36.000 12.86 12.86 38.70 2.40
3608 4034 7.419204 TGTCCGTTTTTCTAACCATTTAACAG 58.581 34.615 0.00 0.00 0.00 3.16
3681 4108 8.177119 ACCATCACTGTTAAGATCTATCTCTC 57.823 38.462 0.00 0.00 35.76 3.20
3778 4207 8.786898 GCAGGACATTAGAAGCATTATGATAAA 58.213 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.105006 AGACAAGAGCGTGCATTGAT 57.895 45.000 14.29 0.00 0.00 2.57
181 195 0.877071 CGTGGCACATCAGCTTTTCT 59.123 50.000 19.09 0.00 44.52 2.52
207 227 7.358023 CCAAACAGAAAACGCATGTATGTTTAC 60.358 37.037 11.46 0.00 37.31 2.01
240 265 3.156511 CAGTGTATGCTCGATCAGTGT 57.843 47.619 0.00 0.00 0.00 3.55
291 316 3.627732 CAGTACGTCTCACTGAACTGT 57.372 47.619 10.80 0.00 45.10 3.55
297 322 3.237628 CACACATCAGTACGTCTCACTG 58.762 50.000 10.15 10.15 43.92 3.66
331 356 0.327924 TGATCCAACATCAGCCCGTT 59.672 50.000 0.00 0.00 0.00 4.44
335 360 4.082081 TGAACAATTGATCCAACATCAGCC 60.082 41.667 13.59 0.00 0.00 4.85
336 361 5.063180 TGAACAATTGATCCAACATCAGC 57.937 39.130 13.59 0.00 0.00 4.26
371 396 5.581126 AATGTCTCTTTCTGTTTGCAACA 57.419 34.783 0.00 0.00 39.52 3.33
395 420 4.652679 TCAGACTCACTAGTGAACCCTA 57.347 45.455 25.14 9.47 39.39 3.53
397 422 4.020543 AGATCAGACTCACTAGTGAACCC 58.979 47.826 25.14 16.41 39.39 4.11
439 464 1.004277 TCCCACTGCCCATAAGTTCAC 59.996 52.381 0.00 0.00 0.00 3.18
446 471 1.985159 GACCATATCCCACTGCCCATA 59.015 52.381 0.00 0.00 0.00 2.74
460 485 5.428253 GCAATCTAACAGAGTTGGACCATA 58.572 41.667 0.00 0.00 0.00 2.74
464 489 2.673368 CGGCAATCTAACAGAGTTGGAC 59.327 50.000 0.00 0.00 0.00 4.02
471 496 1.153449 CGGCCGGCAATCTAACAGA 60.153 57.895 30.85 0.00 0.00 3.41
494 519 3.152341 AGGTTTTTGCAGACCTGATGAG 58.848 45.455 15.25 0.00 44.40 2.90
495 520 3.149196 GAGGTTTTTGCAGACCTGATGA 58.851 45.455 19.42 0.00 46.01 2.92
496 521 2.229784 GGAGGTTTTTGCAGACCTGATG 59.770 50.000 19.42 0.00 46.01 3.07
497 522 2.519013 GGAGGTTTTTGCAGACCTGAT 58.481 47.619 19.42 0.78 46.01 2.90
507 532 3.416156 CTCAAGAGGAGGGAGGTTTTTG 58.584 50.000 0.00 0.00 40.13 2.44
578 604 3.378339 GCCTGCTTAATTTGCATGCTAG 58.622 45.455 20.33 7.56 44.57 3.42
670 703 5.358160 ACCAAAGTCCAAATGCTATAGCTTC 59.642 40.000 24.61 7.14 42.66 3.86
705 738 2.638480 ATGGAGGAGAGAGTCTCGAG 57.362 55.000 14.47 5.93 44.28 4.04
708 741 4.320935 GCGAATAATGGAGGAGAGAGTCTC 60.321 50.000 12.54 12.54 42.66 3.36
754 787 6.410540 GCTTGAAATATATAGAGGTGGGAGG 58.589 44.000 0.00 0.00 0.00 4.30
762 795 7.041107 GGCAGAGAGGCTTGAAATATATAGAG 58.959 42.308 0.00 0.00 40.24 2.43
813 849 0.036858 GGTGAGACCCTGAGAGCAAC 60.037 60.000 0.00 0.00 30.04 4.17
870 906 1.756430 TCACTCGCAGTGCTCTCTAT 58.244 50.000 14.33 0.00 45.54 1.98
911 947 1.374758 GCTCGTGTGTGCCTAGCTT 60.375 57.895 0.00 0.00 0.00 3.74
927 963 7.057264 TCTTGAGTACTCTATATCTGTGTGCT 58.943 38.462 23.01 0.00 0.00 4.40
928 964 7.265647 TCTTGAGTACTCTATATCTGTGTGC 57.734 40.000 23.01 0.00 0.00 4.57
939 975 7.145985 GTGTGACAATGTTCTTGAGTACTCTA 58.854 38.462 23.01 15.07 0.00 2.43
984 1020 1.485397 CCATCTGATTCAGCGTCGAG 58.515 55.000 8.89 0.00 0.00 4.04
1209 1245 4.589700 ACGCGCACGCTGTTGTTG 62.590 61.111 13.70 0.00 45.53 3.33
1270 1309 3.862267 CACGAAGAATGGTGAGAAGCTAG 59.138 47.826 0.00 0.00 37.45 3.42
1272 1311 2.037772 ACACGAAGAATGGTGAGAAGCT 59.962 45.455 0.00 0.00 37.45 3.74
1274 1313 3.185188 CACACACGAAGAATGGTGAGAAG 59.815 47.826 0.00 0.00 37.45 2.85
1281 1334 1.069703 CACTGCACACACGAAGAATGG 60.070 52.381 0.00 0.00 0.00 3.16
1784 1866 4.363138 ACACATCATGCATGTACTACGAG 58.637 43.478 25.43 11.20 44.60 4.18
1966 2062 7.473735 TCTGTGAAGCCATTAGATAGATAGG 57.526 40.000 0.00 0.00 0.00 2.57
1985 2081 2.320587 GCTGGAGCCGTGTTCTGTG 61.321 63.158 0.00 0.00 34.31 3.66
2211 2307 2.416202 GCATATATATGTGCACGCAGCA 59.584 45.455 24.67 0.00 43.34 4.41
2223 2319 4.060900 GCCATAGTGCGCTGCATATATAT 58.939 43.478 10.80 0.00 41.91 0.86
2224 2320 3.118811 TGCCATAGTGCGCTGCATATATA 60.119 43.478 10.80 0.00 41.91 0.86
2225 2321 2.283298 GCCATAGTGCGCTGCATATAT 58.717 47.619 10.80 6.11 41.91 0.86
2226 2322 1.001860 TGCCATAGTGCGCTGCATATA 59.998 47.619 10.80 4.30 41.91 0.86
2233 2329 2.034879 GTGTGTGCCATAGTGCGCT 61.035 57.895 9.73 4.58 42.20 5.92
2236 2332 2.868583 CTCTATGTGTGTGCCATAGTGC 59.131 50.000 7.16 0.00 41.55 4.40
2240 2336 5.869649 ATGTACTCTATGTGTGTGCCATA 57.130 39.130 0.00 0.00 0.00 2.74
2241 2337 4.760530 ATGTACTCTATGTGTGTGCCAT 57.239 40.909 0.00 0.00 0.00 4.40
2263 2359 2.429250 AGCTACCACGTATGCACATGTA 59.571 45.455 0.00 0.00 0.00 2.29
2264 2360 1.207089 AGCTACCACGTATGCACATGT 59.793 47.619 0.00 0.00 0.00 3.21
2265 2361 1.860950 GAGCTACCACGTATGCACATG 59.139 52.381 0.00 0.00 0.00 3.21
2266 2362 1.480545 TGAGCTACCACGTATGCACAT 59.519 47.619 0.00 0.00 0.00 3.21
2267 2363 0.892063 TGAGCTACCACGTATGCACA 59.108 50.000 0.00 0.00 0.00 4.57
2268 2364 1.860950 CATGAGCTACCACGTATGCAC 59.139 52.381 0.00 0.00 0.00 4.57
2269 2365 1.806247 GCATGAGCTACCACGTATGCA 60.806 52.381 10.05 0.00 40.30 3.96
2270 2366 0.861837 GCATGAGCTACCACGTATGC 59.138 55.000 0.00 0.38 37.91 3.14
2559 2673 5.503002 TGTATGCAGTAGAGTAGTGGTGTA 58.497 41.667 0.00 0.00 0.00 2.90
2560 2674 4.341487 TGTATGCAGTAGAGTAGTGGTGT 58.659 43.478 0.00 0.00 0.00 4.16
2589 2703 9.709495 ATTTATTTTATTCATGCTGTGTGTGTT 57.291 25.926 0.00 0.00 0.00 3.32
2758 2872 1.493311 GTTGACGAAGCTCTTGCCG 59.507 57.895 0.00 0.00 40.80 5.69
2779 2893 1.148273 TGGTGTGAGCCAGTGGAAC 59.852 57.895 15.20 8.25 33.97 3.62
2811 2925 0.546122 TGGTGCTGGAAACTGTCTGT 59.454 50.000 0.00 0.00 0.00 3.41
2881 2998 7.953752 ACTAGTTCCTTTATATCTGTGCTACC 58.046 38.462 0.00 0.00 0.00 3.18
2992 3112 5.009610 ACATGAACAATTTGGTCTGGTACAC 59.990 40.000 15.15 0.00 34.53 2.90
3028 3151 5.072741 ACCAATTCATCTGTGCTGTTTAGT 58.927 37.500 0.00 0.00 0.00 2.24
3039 3162 4.319766 GCAGGCGTATAACCAATTCATCTG 60.320 45.833 0.00 0.00 0.00 2.90
3040 3163 3.815401 GCAGGCGTATAACCAATTCATCT 59.185 43.478 0.00 0.00 0.00 2.90
3049 3172 2.781681 ATATGGGCAGGCGTATAACC 57.218 50.000 0.00 0.00 0.00 2.85
3064 3187 4.157289 GTCCCCTGCAAAGCATCATATATG 59.843 45.833 6.36 6.36 38.13 1.78
3121 3244 1.156736 GTACCACATGAAGCAGCGTT 58.843 50.000 0.00 0.00 0.00 4.84
3140 3263 4.808414 TCTCTGTTGATACCAGTCCTTG 57.192 45.455 0.00 0.00 0.00 3.61
3337 3592 1.281899 GCTCGGTTGAGATGTAGTGC 58.718 55.000 0.00 0.00 45.57 4.40
3417 3672 6.016527 ACATGCATGCTTACCAAGAATAGATG 60.017 38.462 26.53 10.88 0.00 2.90
3422 3677 3.065786 CGACATGCATGCTTACCAAGAAT 59.934 43.478 26.53 1.90 0.00 2.40
3455 3710 6.934645 GGTGCCTGCTATATAACTTGACATAA 59.065 38.462 0.00 0.00 0.00 1.90
3565 3984 7.062749 ACGGACATATAGCCTTCTATTGAAA 57.937 36.000 0.00 0.00 36.86 2.69
3608 4034 4.523083 TGTCTGTAGGTAAATCATTGCCC 58.477 43.478 0.00 0.00 41.84 5.36
3681 4108 4.853196 CCACTTGAACAAATCTGTAATGCG 59.147 41.667 0.00 0.00 33.45 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.