Multiple sequence alignment - TraesCS2D01G408800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G408800 chr2D 100.000 2657 0 0 1 2657 523638613 523635957 0.000000e+00 4907.0
1 TraesCS2D01G408800 chr2D 87.994 683 47 15 1152 1803 523629477 523628799 0.000000e+00 774.0
2 TraesCS2D01G408800 chr2D 86.842 228 21 6 934 1161 523630793 523630575 2.040000e-61 246.0
3 TraesCS2D01G408800 chr2D 88.710 124 9 3 1966 2084 523628362 523628239 2.130000e-31 147.0
4 TraesCS2D01G408800 chr2D 87.619 105 13 0 2539 2643 102861638 102861742 3.590000e-24 122.0
5 TraesCS2D01G408800 chr2B 89.920 1369 112 13 937 2289 617950278 617948920 0.000000e+00 1740.0
6 TraesCS2D01G408800 chr2B 85.685 985 83 29 1 935 45644071 45645047 0.000000e+00 985.0
7 TraesCS2D01G408800 chrUn 94.002 917 38 13 31 934 102523894 102522982 0.000000e+00 1373.0
8 TraesCS2D01G408800 chrUn 82.436 427 36 15 1 391 346322122 346322545 1.180000e-88 337.0
9 TraesCS2D01G408800 chrUn 82.284 429 35 15 1 391 346198384 346197959 1.520000e-87 333.0
10 TraesCS2D01G408800 chrUn 100.000 55 0 0 1 55 102523951 102523897 4.680000e-18 102.0
11 TraesCS2D01G408800 chr4A 90.103 970 56 9 1 935 120562429 120561465 0.000000e+00 1223.0
12 TraesCS2D01G408800 chr4A 92.903 620 29 6 1 607 681890637 681890020 0.000000e+00 887.0
13 TraesCS2D01G408800 chr3A 90.420 929 44 8 29 934 89576041 89576947 0.000000e+00 1181.0
14 TraesCS2D01G408800 chr3A 91.561 711 29 13 241 927 89575517 89574814 0.000000e+00 952.0
15 TraesCS2D01G408800 chr3A 81.598 989 106 37 1 934 640444033 640443066 0.000000e+00 749.0
16 TraesCS2D01G408800 chr3A 85.816 141 20 0 1286 1426 731695728 731695868 1.650000e-32 150.0
17 TraesCS2D01G408800 chr3A 83.621 116 15 3 2538 2650 71806035 71805921 3.620000e-19 106.0
18 TraesCS2D01G408800 chr3A 84.404 109 15 2 2538 2645 71866462 71866569 3.620000e-19 106.0
19 TraesCS2D01G408800 chr3A 98.182 55 0 1 1 55 89575987 89576040 7.830000e-16 95.3
20 TraesCS2D01G408800 chr3A 77.778 162 21 8 2124 2272 130587877 130587718 4.710000e-13 86.1
21 TraesCS2D01G408800 chr2A 89.593 836 56 16 1361 2180 669436180 669435360 0.000000e+00 1033.0
22 TraesCS2D01G408800 chr2A 83.691 466 46 12 934 1370 669438356 669437892 1.900000e-111 412.0
23 TraesCS2D01G408800 chr2A 86.207 58 8 0 2563 2620 715910329 715910272 2.210000e-06 63.9
24 TraesCS2D01G408800 chr1A 80.237 1012 113 35 1 934 486959207 486960209 0.000000e+00 680.0
25 TraesCS2D01G408800 chr1A 90.625 128 12 0 807 934 398890602 398890475 1.260000e-38 171.0
26 TraesCS2D01G408800 chr7A 79.210 861 109 34 116 934 610273839 610274671 3.890000e-148 534.0
27 TraesCS2D01G408800 chr7A 84.434 424 31 15 1 391 537553 537974 4.150000e-103 385.0
28 TraesCS2D01G408800 chr7A 84.375 352 38 5 600 934 538696 539047 1.970000e-86 329.0
29 TraesCS2D01G408800 chr7A 83.654 208 20 2 739 934 139792668 139792873 1.620000e-42 183.0
30 TraesCS2D01G408800 chr7A 87.943 141 17 0 1286 1426 690362728 690362868 1.640000e-37 167.0
31 TraesCS2D01G408800 chr7A 97.619 42 1 0 2136 2177 669032173 669032214 3.670000e-09 73.1
32 TraesCS2D01G408800 chr5A 87.696 447 32 6 511 935 180346161 180346606 1.420000e-137 499.0
33 TraesCS2D01G408800 chr5A 96.691 272 7 2 240 511 180341764 180342033 4.030000e-123 451.0
34 TraesCS2D01G408800 chr5A 82.166 157 3 9 1 132 180341304 180341148 7.770000e-21 111.0
35 TraesCS2D01G408800 chr5A 82.203 118 19 2 2538 2654 428147592 428147476 1.680000e-17 100.0
36 TraesCS2D01G408800 chr3B 83.209 536 51 16 191 694 342502279 342501751 3.120000e-124 455.0
37 TraesCS2D01G408800 chr7D 84.123 422 33 15 1 391 381094 381512 6.940000e-101 377.0
38 TraesCS2D01G408800 chr7D 91.406 128 11 0 808 935 78887296 78887423 2.720000e-40 176.0
39 TraesCS2D01G408800 chr7D 87.162 148 18 1 1286 1433 597683897 597683751 1.640000e-37 167.0
40 TraesCS2D01G408800 chr7D 86.087 115 14 1 2538 2650 459077578 459077464 3.590000e-24 122.0
41 TraesCS2D01G408800 chr7D 92.857 42 3 0 2136 2177 500243239 500243280 7.940000e-06 62.1
42 TraesCS2D01G408800 chr1B 87.387 333 27 13 116 438 619386372 619386045 4.180000e-98 368.0
43 TraesCS2D01G408800 chr7B 90.196 102 10 0 1286 1387 676410677 676410778 1.660000e-27 134.0
44 TraesCS2D01G408800 chr7B 85.135 74 10 1 2552 2624 53621532 53621459 1.020000e-09 75.0
45 TraesCS2D01G408800 chr1D 85.156 128 18 1 1299 1426 406099420 406099546 2.150000e-26 130.0
46 TraesCS2D01G408800 chr6D 81.159 138 11 6 2132 2255 10749449 10749313 2.180000e-16 97.1
47 TraesCS2D01G408800 chr6D 82.222 90 16 0 2555 2644 470029494 470029405 7.890000e-11 78.7
48 TraesCS2D01G408800 chr5B 82.407 108 18 1 2538 2644 565538402 565538509 2.820000e-15 93.5
49 TraesCS2D01G408800 chr3D 93.750 48 2 1 2132 2178 182592688 182592735 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G408800 chr2D 523635957 523638613 2656 True 4907.00 4907 100.000000 1 2657 1 chr2D.!!$R1 2656
1 TraesCS2D01G408800 chr2D 523628239 523630793 2554 True 389.00 774 87.848667 934 2084 3 chr2D.!!$R2 1150
2 TraesCS2D01G408800 chr2B 617948920 617950278 1358 True 1740.00 1740 89.920000 937 2289 1 chr2B.!!$R1 1352
3 TraesCS2D01G408800 chr2B 45644071 45645047 976 False 985.00 985 85.685000 1 935 1 chr2B.!!$F1 934
4 TraesCS2D01G408800 chrUn 102522982 102523951 969 True 737.50 1373 97.001000 1 934 2 chrUn.!!$R2 933
5 TraesCS2D01G408800 chr4A 120561465 120562429 964 True 1223.00 1223 90.103000 1 935 1 chr4A.!!$R1 934
6 TraesCS2D01G408800 chr4A 681890020 681890637 617 True 887.00 887 92.903000 1 607 1 chr4A.!!$R2 606
7 TraesCS2D01G408800 chr3A 89574814 89575517 703 True 952.00 952 91.561000 241 927 1 chr3A.!!$R2 686
8 TraesCS2D01G408800 chr3A 640443066 640444033 967 True 749.00 749 81.598000 1 934 1 chr3A.!!$R4 933
9 TraesCS2D01G408800 chr3A 89575987 89576947 960 False 638.15 1181 94.301000 1 934 2 chr3A.!!$F3 933
10 TraesCS2D01G408800 chr2A 669435360 669438356 2996 True 722.50 1033 86.642000 934 2180 2 chr2A.!!$R2 1246
11 TraesCS2D01G408800 chr1A 486959207 486960209 1002 False 680.00 680 80.237000 1 934 1 chr1A.!!$F1 933
12 TraesCS2D01G408800 chr7A 610273839 610274671 832 False 534.00 534 79.210000 116 934 1 chr7A.!!$F2 818
13 TraesCS2D01G408800 chr7A 537553 539047 1494 False 357.00 385 84.404500 1 934 2 chr7A.!!$F5 933
14 TraesCS2D01G408800 chr3B 342501751 342502279 528 True 455.00 455 83.209000 191 694 1 chr3B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1766 0.71167 TTTCGATCGTTTTCTCGCCG 59.288 50.0 15.94 0.0 34.94 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 6554 0.03438 TCCTCCTCGAGTTCGTCCAT 60.034 55.0 12.31 0.0 40.8 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 101 6.480524 TTCATGAATACTAAGTGTGTGTGC 57.519 37.500 3.38 0.00 0.00 4.57
72 104 1.346365 ATACTAAGTGTGTGTGCGCG 58.654 50.000 0.00 0.00 0.00 6.86
73 105 1.279527 TACTAAGTGTGTGTGCGCGC 61.280 55.000 27.26 27.26 35.99 6.86
397 513 9.826574 AATCCATCAATACATTTTTGAATCAGG 57.173 29.630 0.00 0.00 36.72 3.86
766 1546 2.125713 CCGCATACAGACGTGGCA 60.126 61.111 0.00 0.00 0.00 4.92
820 1612 1.689813 TGTAGCGTTTCAACCTCAGGA 59.310 47.619 0.00 0.00 0.00 3.86
943 1735 6.219473 AGATGCAATTATCTCGATTTCTCGT 58.781 36.000 0.00 0.00 45.25 4.18
945 1737 6.993175 TGCAATTATCTCGATTTCTCGTAG 57.007 37.500 0.00 0.00 45.25 3.51
955 1747 3.927142 CGATTTCTCGTAGGCACTTCTTT 59.073 43.478 0.00 0.00 40.07 2.52
974 1766 0.711670 TTTCGATCGTTTTCTCGCCG 59.288 50.000 15.94 0.00 34.94 6.46
975 1767 1.074319 TTCGATCGTTTTCTCGCCGG 61.074 55.000 15.94 0.00 34.94 6.13
1012 1804 1.254975 GGCGGCAATGGTAAACCCTT 61.255 55.000 3.07 0.00 34.29 3.95
1092 1891 0.671781 CAGGCCGTGAAGAAGGACAG 60.672 60.000 0.00 0.00 38.23 3.51
1204 3121 3.065655 CAAGCGATCTCCCAGATGAATC 58.934 50.000 0.00 0.00 34.53 2.52
1211 3129 4.494091 TCTCCCAGATGAATCCACTTTC 57.506 45.455 0.00 0.00 0.00 2.62
1230 3160 0.684479 CCTCACCTCTGGATCACCGA 60.684 60.000 0.00 0.00 39.42 4.69
1232 3162 0.895530 TCACCTCTGGATCACCGAAC 59.104 55.000 0.00 0.00 39.42 3.95
1235 3165 0.461961 CCTCTGGATCACCGAACCTC 59.538 60.000 0.00 0.00 39.42 3.85
1246 3176 3.515502 TCACCGAACCTCTCATGAATCTT 59.484 43.478 0.00 0.00 0.00 2.40
1321 3261 2.766345 AAGCAGAAGGAGAAGCTCAG 57.234 50.000 0.00 0.00 36.07 3.35
1482 5143 0.037139 TAACCCGCGTACAATGCACT 60.037 50.000 4.92 0.00 0.00 4.40
1483 5144 0.037139 AACCCGCGTACAATGCACTA 60.037 50.000 4.92 0.00 0.00 2.74
1484 5145 0.459585 ACCCGCGTACAATGCACTAG 60.460 55.000 4.92 0.00 0.00 2.57
1656 5338 4.509616 CCACCAATGTACCATCGAGTTAA 58.490 43.478 0.00 0.00 0.00 2.01
1697 5382 3.123116 GCGTTTTTCTAGTCCAGCACTAC 59.877 47.826 0.00 0.00 36.43 2.73
1900 5647 7.977853 CCCTCATTTGATCAAAAGAACAATAGG 59.022 37.037 23.91 18.64 33.56 2.57
1921 5668 3.769300 GGGCCAGGTTTTTCAGTATTGAT 59.231 43.478 4.39 0.00 32.27 2.57
1948 5695 2.746362 CCACAAGAGAATTGACCTCTGC 59.254 50.000 0.00 0.00 40.58 4.26
2089 6063 1.597195 TCGCGTTGGCAATTATAGCTG 59.403 47.619 5.77 2.57 39.92 4.24
2099 6073 3.805807 GCAATTATAGCTGCCCCGTCTTA 60.806 47.826 0.00 0.00 32.18 2.10
2102 6076 4.699925 TTATAGCTGCCCCGTCTTATTT 57.300 40.909 0.00 0.00 0.00 1.40
2125 6099 2.746279 TTGTGTGTGGAAAGGACCAT 57.254 45.000 0.00 0.00 42.17 3.55
2139 6113 9.627123 TGGAAAGGACCATATCAGTTATAAAAG 57.373 33.333 0.00 0.00 34.77 2.27
2167 6141 8.739039 TCATCGGAAATACAAAACATCTCAAAT 58.261 29.630 0.00 0.00 0.00 2.32
2208 6189 0.179153 GAACGACCACTACTACCGCC 60.179 60.000 0.00 0.00 0.00 6.13
2213 6194 0.893447 ACCACTACTACCGCCAGAAC 59.107 55.000 0.00 0.00 0.00 3.01
2214 6195 0.892755 CCACTACTACCGCCAGAACA 59.107 55.000 0.00 0.00 0.00 3.18
2245 6226 4.394712 CCGTTCCCGCTGCTTCCT 62.395 66.667 0.00 0.00 0.00 3.36
2255 6236 0.105778 GCTGCTTCCTTATCGGAGCT 59.894 55.000 0.00 0.00 44.28 4.09
2257 6238 0.465705 TGCTTCCTTATCGGAGCTGG 59.534 55.000 0.00 0.00 44.28 4.85
2258 6239 0.466124 GCTTCCTTATCGGAGCTGGT 59.534 55.000 0.00 0.00 44.28 4.00
2265 6246 1.568504 TATCGGAGCTGGTTTGACCT 58.431 50.000 0.00 0.00 39.58 3.85
2267 6248 1.344065 TCGGAGCTGGTTTGACCTTA 58.656 50.000 0.00 0.00 39.58 2.69
2289 6270 4.046938 TCGAACTCTTGCATGGATCTAC 57.953 45.455 0.00 0.00 0.00 2.59
2290 6271 2.791560 CGAACTCTTGCATGGATCTACG 59.208 50.000 0.00 0.00 0.00 3.51
2291 6272 2.231215 ACTCTTGCATGGATCTACGC 57.769 50.000 0.00 0.00 0.00 4.42
2292 6273 1.202580 ACTCTTGCATGGATCTACGCC 60.203 52.381 0.00 0.00 0.00 5.68
2293 6274 0.249447 TCTTGCATGGATCTACGCCG 60.249 55.000 0.00 0.00 0.00 6.46
2294 6275 1.224069 CTTGCATGGATCTACGCCGG 61.224 60.000 0.00 0.00 0.00 6.13
2295 6276 1.681486 TTGCATGGATCTACGCCGGA 61.681 55.000 5.05 0.00 0.00 5.14
2296 6277 1.373497 GCATGGATCTACGCCGGAG 60.373 63.158 5.05 3.72 0.00 4.63
2297 6278 2.041976 CATGGATCTACGCCGGAGT 58.958 57.895 17.10 17.10 0.00 3.85
2298 6279 0.389391 CATGGATCTACGCCGGAGTT 59.611 55.000 18.33 0.00 0.00 3.01
2299 6280 0.389391 ATGGATCTACGCCGGAGTTG 59.611 55.000 18.33 15.46 0.00 3.16
2300 6281 0.681887 TGGATCTACGCCGGAGTTGA 60.682 55.000 22.64 22.64 0.00 3.18
2301 6282 0.248949 GGATCTACGCCGGAGTTGAC 60.249 60.000 22.82 16.14 0.00 3.18
2302 6283 0.591741 GATCTACGCCGGAGTTGACG 60.592 60.000 22.82 9.88 0.00 4.35
2308 6289 4.007457 CCGGAGTTGACGGTAGGA 57.993 61.111 0.00 0.00 46.03 2.94
2309 6290 2.269978 CCGGAGTTGACGGTAGGAA 58.730 57.895 0.00 0.00 46.03 3.36
2310 6291 0.822164 CCGGAGTTGACGGTAGGAAT 59.178 55.000 0.00 0.00 46.03 3.01
2311 6292 1.202382 CCGGAGTTGACGGTAGGAATC 60.202 57.143 0.00 0.00 46.03 2.52
2312 6293 1.749634 CGGAGTTGACGGTAGGAATCT 59.250 52.381 0.00 0.00 0.00 2.40
2313 6294 2.947652 CGGAGTTGACGGTAGGAATCTA 59.052 50.000 0.00 0.00 0.00 1.98
2314 6295 3.243002 CGGAGTTGACGGTAGGAATCTAC 60.243 52.174 0.00 0.00 43.82 2.59
2315 6296 3.952967 GGAGTTGACGGTAGGAATCTACT 59.047 47.826 3.95 0.00 43.97 2.57
2316 6297 4.036616 GGAGTTGACGGTAGGAATCTACTC 59.963 50.000 6.54 6.54 43.97 2.59
2317 6298 4.857679 AGTTGACGGTAGGAATCTACTCT 58.142 43.478 3.95 0.00 43.97 3.24
2318 6299 4.641094 AGTTGACGGTAGGAATCTACTCTG 59.359 45.833 3.95 0.00 43.97 3.35
2319 6300 3.552875 TGACGGTAGGAATCTACTCTGG 58.447 50.000 3.95 0.00 43.97 3.86
2320 6301 3.201487 TGACGGTAGGAATCTACTCTGGA 59.799 47.826 3.95 0.00 43.97 3.86
2321 6302 3.816523 GACGGTAGGAATCTACTCTGGAG 59.183 52.174 3.95 0.00 43.97 3.86
2322 6303 3.202595 ACGGTAGGAATCTACTCTGGAGT 59.797 47.826 8.36 8.36 43.97 3.85
2323 6304 3.566322 CGGTAGGAATCTACTCTGGAGTG 59.434 52.174 12.87 4.23 43.97 3.51
2324 6305 4.686396 CGGTAGGAATCTACTCTGGAGTGA 60.686 50.000 12.87 8.80 43.97 3.41
2325 6306 4.825085 GGTAGGAATCTACTCTGGAGTGAG 59.175 50.000 12.87 7.06 43.97 3.51
2327 6308 5.718801 AGGAATCTACTCTGGAGTGAGTA 57.281 43.478 12.87 4.62 44.53 2.59
2332 6313 2.982339 ACTCTGGAGTGAGTAGTGGT 57.018 50.000 2.15 0.00 44.53 4.16
2333 6314 2.797786 ACTCTGGAGTGAGTAGTGGTC 58.202 52.381 2.15 0.00 44.53 4.02
2334 6315 2.108425 ACTCTGGAGTGAGTAGTGGTCA 59.892 50.000 2.15 0.00 44.53 4.02
2335 6316 2.752354 CTCTGGAGTGAGTAGTGGTCAG 59.248 54.545 0.00 0.00 0.00 3.51
2336 6317 2.108425 TCTGGAGTGAGTAGTGGTCAGT 59.892 50.000 0.00 0.00 0.00 3.41
2337 6318 2.894126 CTGGAGTGAGTAGTGGTCAGTT 59.106 50.000 0.00 0.00 0.00 3.16
2338 6319 4.079970 CTGGAGTGAGTAGTGGTCAGTTA 58.920 47.826 0.00 0.00 0.00 2.24
2339 6320 4.079970 TGGAGTGAGTAGTGGTCAGTTAG 58.920 47.826 0.00 0.00 0.00 2.34
2340 6321 3.444388 GGAGTGAGTAGTGGTCAGTTAGG 59.556 52.174 0.00 0.00 0.00 2.69
2341 6322 4.080687 GAGTGAGTAGTGGTCAGTTAGGT 58.919 47.826 0.00 0.00 0.00 3.08
2342 6323 4.481072 AGTGAGTAGTGGTCAGTTAGGTT 58.519 43.478 0.00 0.00 0.00 3.50
2343 6324 4.281182 AGTGAGTAGTGGTCAGTTAGGTTG 59.719 45.833 0.00 0.00 0.00 3.77
2344 6325 4.038883 GTGAGTAGTGGTCAGTTAGGTTGT 59.961 45.833 0.00 0.00 0.00 3.32
2345 6326 5.242393 GTGAGTAGTGGTCAGTTAGGTTGTA 59.758 44.000 0.00 0.00 0.00 2.41
2346 6327 5.242393 TGAGTAGTGGTCAGTTAGGTTGTAC 59.758 44.000 0.00 0.00 0.00 2.90
2347 6328 5.392125 AGTAGTGGTCAGTTAGGTTGTACT 58.608 41.667 0.00 0.00 0.00 2.73
2348 6329 5.837438 AGTAGTGGTCAGTTAGGTTGTACTT 59.163 40.000 0.00 0.00 0.00 2.24
2349 6330 5.211174 AGTGGTCAGTTAGGTTGTACTTC 57.789 43.478 0.00 0.00 0.00 3.01
2350 6331 4.040095 AGTGGTCAGTTAGGTTGTACTTCC 59.960 45.833 0.00 0.00 0.00 3.46
2351 6332 4.040095 GTGGTCAGTTAGGTTGTACTTCCT 59.960 45.833 12.52 12.52 37.80 3.36
2352 6333 4.282703 TGGTCAGTTAGGTTGTACTTCCTC 59.717 45.833 11.53 1.59 35.51 3.71
2353 6334 4.483311 GTCAGTTAGGTTGTACTTCCTCG 58.517 47.826 11.53 2.60 35.51 4.63
2354 6335 3.057033 TCAGTTAGGTTGTACTTCCTCGC 60.057 47.826 11.53 7.31 35.51 5.03
2355 6336 2.233186 AGTTAGGTTGTACTTCCTCGCC 59.767 50.000 11.53 3.68 35.51 5.54
2356 6337 2.226962 TAGGTTGTACTTCCTCGCCT 57.773 50.000 11.53 0.00 35.51 5.52
2357 6338 2.226962 AGGTTGTACTTCCTCGCCTA 57.773 50.000 0.00 0.00 0.00 3.93
2358 6339 2.532843 AGGTTGTACTTCCTCGCCTAA 58.467 47.619 0.00 0.00 0.00 2.69
2359 6340 2.233186 AGGTTGTACTTCCTCGCCTAAC 59.767 50.000 0.00 0.00 0.00 2.34
2360 6341 2.233186 GGTTGTACTTCCTCGCCTAACT 59.767 50.000 0.00 0.00 0.00 2.24
2361 6342 3.251571 GTTGTACTTCCTCGCCTAACTG 58.748 50.000 0.00 0.00 0.00 3.16
2362 6343 1.203994 TGTACTTCCTCGCCTAACTGC 59.796 52.381 0.00 0.00 0.00 4.40
2363 6344 1.477295 GTACTTCCTCGCCTAACTGCT 59.523 52.381 0.00 0.00 0.00 4.24
2364 6345 0.977395 ACTTCCTCGCCTAACTGCTT 59.023 50.000 0.00 0.00 0.00 3.91
2365 6346 1.348036 ACTTCCTCGCCTAACTGCTTT 59.652 47.619 0.00 0.00 0.00 3.51
2366 6347 1.734465 CTTCCTCGCCTAACTGCTTTG 59.266 52.381 0.00 0.00 0.00 2.77
2367 6348 0.036388 TCCTCGCCTAACTGCTTTGG 60.036 55.000 0.00 0.00 0.00 3.28
2368 6349 1.026718 CCTCGCCTAACTGCTTTGGG 61.027 60.000 0.00 0.00 38.91 4.12
2373 6354 2.044123 CCTAACTGCTTTGGGCCTAG 57.956 55.000 4.53 3.21 40.92 3.02
2374 6355 1.383523 CTAACTGCTTTGGGCCTAGC 58.616 55.000 19.98 19.98 40.92 3.42
2375 6356 0.392461 TAACTGCTTTGGGCCTAGCG 60.392 55.000 20.89 17.90 40.26 4.26
2376 6357 3.512516 CTGCTTTGGGCCTAGCGC 61.513 66.667 20.89 0.00 40.26 5.92
2377 6358 3.984193 CTGCTTTGGGCCTAGCGCT 62.984 63.158 17.26 17.26 42.10 5.92
2378 6359 3.205536 GCTTTGGGCCTAGCGCTC 61.206 66.667 16.34 0.00 42.10 5.03
2379 6360 2.514824 CTTTGGGCCTAGCGCTCC 60.515 66.667 16.34 10.09 42.10 4.70
2380 6361 3.009115 TTTGGGCCTAGCGCTCCT 61.009 61.111 16.34 0.00 42.10 3.69
2381 6362 3.329542 TTTGGGCCTAGCGCTCCTG 62.330 63.158 16.34 4.50 42.10 3.86
2383 6364 4.537433 GGGCCTAGCGCTCCTGTG 62.537 72.222 16.34 0.00 38.48 3.66
2384 6365 3.775654 GGCCTAGCGCTCCTGTGT 61.776 66.667 16.34 0.00 37.74 3.72
2385 6366 2.202810 GCCTAGCGCTCCTGTGTC 60.203 66.667 16.34 0.00 0.00 3.67
2386 6367 2.716017 GCCTAGCGCTCCTGTGTCT 61.716 63.158 16.34 0.00 0.00 3.41
2387 6368 1.140589 CCTAGCGCTCCTGTGTCTG 59.859 63.158 16.34 0.00 0.00 3.51
2388 6369 1.140589 CTAGCGCTCCTGTGTCTGG 59.859 63.158 16.34 0.00 0.00 3.86
2389 6370 2.897641 CTAGCGCTCCTGTGTCTGGC 62.898 65.000 16.34 0.00 0.00 4.85
2392 6373 2.581354 GCTCCTGTGTCTGGCGAT 59.419 61.111 0.00 0.00 0.00 4.58
2393 6374 1.812922 GCTCCTGTGTCTGGCGATG 60.813 63.158 0.00 0.00 0.00 3.84
2394 6375 1.893062 CTCCTGTGTCTGGCGATGA 59.107 57.895 0.00 0.00 0.00 2.92
2395 6376 0.463204 CTCCTGTGTCTGGCGATGAT 59.537 55.000 0.00 0.00 0.00 2.45
2396 6377 0.176449 TCCTGTGTCTGGCGATGATG 59.824 55.000 0.00 0.00 0.00 3.07
2397 6378 0.107993 CCTGTGTCTGGCGATGATGT 60.108 55.000 0.00 0.00 0.00 3.06
2398 6379 1.284657 CTGTGTCTGGCGATGATGTC 58.715 55.000 0.00 0.00 0.00 3.06
2399 6380 0.108186 TGTGTCTGGCGATGATGTCC 60.108 55.000 0.00 0.00 0.00 4.02
2400 6381 0.811616 GTGTCTGGCGATGATGTCCC 60.812 60.000 0.00 0.00 0.00 4.46
2401 6382 0.977627 TGTCTGGCGATGATGTCCCT 60.978 55.000 0.00 0.00 0.00 4.20
2402 6383 0.179000 GTCTGGCGATGATGTCCCTT 59.821 55.000 0.00 0.00 0.00 3.95
2403 6384 0.178767 TCTGGCGATGATGTCCCTTG 59.821 55.000 0.00 0.00 0.00 3.61
2404 6385 0.178767 CTGGCGATGATGTCCCTTGA 59.821 55.000 0.00 0.00 0.00 3.02
2405 6386 0.839277 TGGCGATGATGTCCCTTGAT 59.161 50.000 0.00 0.00 0.00 2.57
2406 6387 1.233019 GGCGATGATGTCCCTTGATG 58.767 55.000 0.00 0.00 0.00 3.07
2407 6388 0.590195 GCGATGATGTCCCTTGATGC 59.410 55.000 0.00 0.00 0.00 3.91
2408 6389 1.813092 GCGATGATGTCCCTTGATGCT 60.813 52.381 0.00 0.00 0.00 3.79
2409 6390 1.871676 CGATGATGTCCCTTGATGCTG 59.128 52.381 0.00 0.00 0.00 4.41
2410 6391 1.607628 GATGATGTCCCTTGATGCTGC 59.392 52.381 0.00 0.00 0.00 5.25
2411 6392 0.328926 TGATGTCCCTTGATGCTGCA 59.671 50.000 4.13 4.13 0.00 4.41
2412 6393 1.064240 TGATGTCCCTTGATGCTGCAT 60.064 47.619 16.20 16.20 0.00 3.96
2413 6394 2.029623 GATGTCCCTTGATGCTGCATT 58.970 47.619 17.36 0.09 0.00 3.56
2414 6395 1.927487 TGTCCCTTGATGCTGCATTT 58.073 45.000 17.36 0.00 0.00 2.32
2415 6396 1.546923 TGTCCCTTGATGCTGCATTTG 59.453 47.619 17.36 9.61 0.00 2.32
2416 6397 1.547372 GTCCCTTGATGCTGCATTTGT 59.453 47.619 17.36 0.00 0.00 2.83
2417 6398 1.820519 TCCCTTGATGCTGCATTTGTC 59.179 47.619 17.36 5.26 0.00 3.18
2418 6399 1.822990 CCCTTGATGCTGCATTTGTCT 59.177 47.619 17.36 0.00 0.00 3.41
2419 6400 2.232941 CCCTTGATGCTGCATTTGTCTT 59.767 45.455 17.36 0.00 0.00 3.01
2420 6401 3.250744 CCTTGATGCTGCATTTGTCTTG 58.749 45.455 17.36 3.65 0.00 3.02
2421 6402 3.305813 CCTTGATGCTGCATTTGTCTTGT 60.306 43.478 17.36 0.00 0.00 3.16
2422 6403 3.564235 TGATGCTGCATTTGTCTTGTC 57.436 42.857 17.36 1.78 0.00 3.18
2423 6404 2.885894 TGATGCTGCATTTGTCTTGTCA 59.114 40.909 17.36 4.62 0.00 3.58
2424 6405 3.057806 TGATGCTGCATTTGTCTTGTCAG 60.058 43.478 17.36 0.00 0.00 3.51
2425 6406 1.001048 TGCTGCATTTGTCTTGTCAGC 60.001 47.619 0.00 5.21 40.96 4.26
2426 6407 1.268899 GCTGCATTTGTCTTGTCAGCT 59.731 47.619 4.95 0.00 39.24 4.24
2427 6408 2.288030 GCTGCATTTGTCTTGTCAGCTT 60.288 45.455 4.95 0.00 39.24 3.74
2428 6409 3.797865 GCTGCATTTGTCTTGTCAGCTTT 60.798 43.478 4.95 0.00 39.24 3.51
2429 6410 3.968649 TGCATTTGTCTTGTCAGCTTTC 58.031 40.909 0.00 0.00 0.00 2.62
2430 6411 3.633525 TGCATTTGTCTTGTCAGCTTTCT 59.366 39.130 0.00 0.00 0.00 2.52
2431 6412 4.098349 TGCATTTGTCTTGTCAGCTTTCTT 59.902 37.500 0.00 0.00 0.00 2.52
2432 6413 5.045872 GCATTTGTCTTGTCAGCTTTCTTT 58.954 37.500 0.00 0.00 0.00 2.52
2433 6414 5.521372 GCATTTGTCTTGTCAGCTTTCTTTT 59.479 36.000 0.00 0.00 0.00 2.27
2434 6415 6.036408 GCATTTGTCTTGTCAGCTTTCTTTTT 59.964 34.615 0.00 0.00 0.00 1.94
2458 6439 6.610741 TTTCATTTTTGGGTTTTCATTCGG 57.389 33.333 0.00 0.00 0.00 4.30
2459 6440 5.283457 TCATTTTTGGGTTTTCATTCGGT 57.717 34.783 0.00 0.00 0.00 4.69
2460 6441 5.675538 TCATTTTTGGGTTTTCATTCGGTT 58.324 33.333 0.00 0.00 0.00 4.44
2461 6442 6.116126 TCATTTTTGGGTTTTCATTCGGTTT 58.884 32.000 0.00 0.00 0.00 3.27
2462 6443 6.599638 TCATTTTTGGGTTTTCATTCGGTTTT 59.400 30.769 0.00 0.00 0.00 2.43
2463 6444 6.424176 TTTTTGGGTTTTCATTCGGTTTTC 57.576 33.333 0.00 0.00 0.00 2.29
2464 6445 3.737032 TGGGTTTTCATTCGGTTTTCC 57.263 42.857 0.00 0.00 0.00 3.13
2465 6446 2.365941 TGGGTTTTCATTCGGTTTTCCC 59.634 45.455 0.00 0.00 36.42 3.97
2466 6447 2.631062 GGGTTTTCATTCGGTTTTCCCT 59.369 45.455 0.00 0.00 36.42 4.20
2467 6448 3.554129 GGGTTTTCATTCGGTTTTCCCTG 60.554 47.826 0.00 0.00 36.42 4.45
2468 6449 3.554129 GGTTTTCATTCGGTTTTCCCTGG 60.554 47.826 0.00 0.00 36.42 4.45
2469 6450 2.961531 TTCATTCGGTTTTCCCTGGA 57.038 45.000 0.00 0.00 36.42 3.86
2470 6451 2.194201 TCATTCGGTTTTCCCTGGAC 57.806 50.000 0.00 0.00 36.42 4.02
2471 6452 1.173913 CATTCGGTTTTCCCTGGACC 58.826 55.000 0.00 0.00 36.42 4.46
2472 6453 0.774908 ATTCGGTTTTCCCTGGACCA 59.225 50.000 0.00 0.00 36.42 4.02
2473 6454 0.551879 TTCGGTTTTCCCTGGACCAA 59.448 50.000 0.00 0.00 36.42 3.67
2474 6455 0.551879 TCGGTTTTCCCTGGACCAAA 59.448 50.000 0.00 0.00 36.42 3.28
2475 6456 0.671796 CGGTTTTCCCTGGACCAAAC 59.328 55.000 0.00 5.33 36.42 2.93
2476 6457 1.752788 CGGTTTTCCCTGGACCAAACT 60.753 52.381 11.37 0.00 36.42 2.66
2477 6458 1.961394 GGTTTTCCCTGGACCAAACTC 59.039 52.381 11.37 1.99 33.61 3.01
2478 6459 2.424379 GGTTTTCCCTGGACCAAACTCT 60.424 50.000 11.37 0.00 33.61 3.24
2479 6460 2.885266 GTTTTCCCTGGACCAAACTCTC 59.115 50.000 0.00 0.00 0.00 3.20
2480 6461 2.118403 TTCCCTGGACCAAACTCTCT 57.882 50.000 0.00 0.00 0.00 3.10
2481 6462 2.118403 TCCCTGGACCAAACTCTCTT 57.882 50.000 0.00 0.00 0.00 2.85
2482 6463 1.978580 TCCCTGGACCAAACTCTCTTC 59.021 52.381 0.00 0.00 0.00 2.87
2483 6464 1.981495 CCCTGGACCAAACTCTCTTCT 59.019 52.381 0.00 0.00 0.00 2.85
2484 6465 2.373502 CCCTGGACCAAACTCTCTTCTT 59.626 50.000 0.00 0.00 0.00 2.52
2485 6466 3.558109 CCCTGGACCAAACTCTCTTCTTC 60.558 52.174 0.00 0.00 0.00 2.87
2486 6467 3.326297 CCTGGACCAAACTCTCTTCTTCT 59.674 47.826 0.00 0.00 0.00 2.85
2487 6468 4.202409 CCTGGACCAAACTCTCTTCTTCTT 60.202 45.833 0.00 0.00 0.00 2.52
2488 6469 5.012148 CCTGGACCAAACTCTCTTCTTCTTA 59.988 44.000 0.00 0.00 0.00 2.10
2489 6470 6.464465 CCTGGACCAAACTCTCTTCTTCTTAA 60.464 42.308 0.00 0.00 0.00 1.85
2490 6471 7.079451 TGGACCAAACTCTCTTCTTCTTAAT 57.921 36.000 0.00 0.00 0.00 1.40
2491 6472 7.162082 TGGACCAAACTCTCTTCTTCTTAATC 58.838 38.462 0.00 0.00 0.00 1.75
2492 6473 7.162082 GGACCAAACTCTCTTCTTCTTAATCA 58.838 38.462 0.00 0.00 0.00 2.57
2493 6474 7.661847 GGACCAAACTCTCTTCTTCTTAATCAA 59.338 37.037 0.00 0.00 0.00 2.57
2494 6475 8.980481 ACCAAACTCTCTTCTTCTTAATCAAA 57.020 30.769 0.00 0.00 0.00 2.69
2495 6476 9.579932 ACCAAACTCTCTTCTTCTTAATCAAAT 57.420 29.630 0.00 0.00 0.00 2.32
2496 6477 9.837525 CCAAACTCTCTTCTTCTTAATCAAATG 57.162 33.333 0.00 0.00 0.00 2.32
2497 6478 9.339492 CAAACTCTCTTCTTCTTAATCAAATGC 57.661 33.333 0.00 0.00 0.00 3.56
2498 6479 7.301068 ACTCTCTTCTTCTTAATCAAATGCG 57.699 36.000 0.00 0.00 0.00 4.73
2499 6480 6.314896 ACTCTCTTCTTCTTAATCAAATGCGG 59.685 38.462 0.00 0.00 0.00 5.69
2500 6481 5.586243 TCTCTTCTTCTTAATCAAATGCGGG 59.414 40.000 0.00 0.00 0.00 6.13
2501 6482 5.496556 TCTTCTTCTTAATCAAATGCGGGA 58.503 37.500 0.00 0.00 0.00 5.14
2502 6483 5.943416 TCTTCTTCTTAATCAAATGCGGGAA 59.057 36.000 0.00 0.00 0.00 3.97
2503 6484 5.560966 TCTTCTTAATCAAATGCGGGAAC 57.439 39.130 0.00 0.00 0.00 3.62
2516 6497 4.048470 GGAACCCCCTGCCCTCAC 62.048 72.222 0.00 0.00 0.00 3.51
2517 6498 3.256960 GAACCCCCTGCCCTCACA 61.257 66.667 0.00 0.00 0.00 3.58
2518 6499 3.569200 GAACCCCCTGCCCTCACAC 62.569 68.421 0.00 0.00 0.00 3.82
2519 6500 4.918360 ACCCCCTGCCCTCACACA 62.918 66.667 0.00 0.00 0.00 3.72
2520 6501 3.579302 CCCCCTGCCCTCACACAA 61.579 66.667 0.00 0.00 0.00 3.33
2521 6502 2.034687 CCCCTGCCCTCACACAAG 59.965 66.667 0.00 0.00 0.00 3.16
2522 6503 2.034687 CCCTGCCCTCACACAAGG 59.965 66.667 0.00 0.00 36.08 3.61
2523 6504 2.833913 CCCTGCCCTCACACAAGGT 61.834 63.158 0.00 0.00 34.34 3.50
2524 6505 1.151450 CCTGCCCTCACACAAGGTT 59.849 57.895 0.00 0.00 34.34 3.50
2525 6506 0.468029 CCTGCCCTCACACAAGGTTT 60.468 55.000 0.00 0.00 34.34 3.27
2526 6507 1.202879 CCTGCCCTCACACAAGGTTTA 60.203 52.381 0.00 0.00 34.34 2.01
2527 6508 2.555227 CCTGCCCTCACACAAGGTTTAT 60.555 50.000 0.00 0.00 34.34 1.40
2528 6509 2.749621 CTGCCCTCACACAAGGTTTATC 59.250 50.000 0.00 0.00 34.34 1.75
2529 6510 2.092323 GCCCTCACACAAGGTTTATCC 58.908 52.381 0.00 0.00 34.34 2.59
2530 6511 2.554344 GCCCTCACACAAGGTTTATCCA 60.554 50.000 0.00 0.00 39.02 3.41
2531 6512 3.761897 CCCTCACACAAGGTTTATCCAA 58.238 45.455 0.00 0.00 39.02 3.53
2532 6513 4.148838 CCCTCACACAAGGTTTATCCAAA 58.851 43.478 0.00 0.00 39.02 3.28
2533 6514 4.586841 CCCTCACACAAGGTTTATCCAAAA 59.413 41.667 0.00 0.00 39.02 2.44
2534 6515 5.069781 CCCTCACACAAGGTTTATCCAAAAA 59.930 40.000 0.00 0.00 39.02 1.94
2556 6537 5.819825 AAAAGGAATCTATGCCGAAACTC 57.180 39.130 0.00 0.00 0.00 3.01
2557 6538 3.477210 AGGAATCTATGCCGAAACTCC 57.523 47.619 0.00 0.00 0.00 3.85
2558 6539 2.135933 GGAATCTATGCCGAAACTCCG 58.864 52.381 0.00 0.00 0.00 4.63
2559 6540 2.483188 GGAATCTATGCCGAAACTCCGT 60.483 50.000 0.00 0.00 0.00 4.69
2560 6541 2.510768 ATCTATGCCGAAACTCCGTC 57.489 50.000 0.00 0.00 0.00 4.79
2561 6542 1.471119 TCTATGCCGAAACTCCGTCT 58.529 50.000 0.00 0.00 0.00 4.18
2562 6543 2.646930 TCTATGCCGAAACTCCGTCTA 58.353 47.619 0.00 0.00 0.00 2.59
2563 6544 2.357009 TCTATGCCGAAACTCCGTCTAC 59.643 50.000 0.00 0.00 0.00 2.59
2564 6545 1.183549 ATGCCGAAACTCCGTCTACT 58.816 50.000 0.00 0.00 0.00 2.57
2565 6546 1.825090 TGCCGAAACTCCGTCTACTA 58.175 50.000 0.00 0.00 0.00 1.82
2566 6547 1.470098 TGCCGAAACTCCGTCTACTAC 59.530 52.381 0.00 0.00 0.00 2.73
2577 6558 3.770263 CGTCTACTACGTCCAAATGGA 57.230 47.619 0.00 0.00 46.72 3.41
2587 6568 2.363788 TCCAAATGGACGAACTCGAG 57.636 50.000 11.84 11.84 39.65 4.04
2588 6569 1.067142 TCCAAATGGACGAACTCGAGG 60.067 52.381 18.41 1.00 39.65 4.63
2589 6570 1.067142 CCAAATGGACGAACTCGAGGA 60.067 52.381 18.41 0.00 43.39 3.71
2590 6571 2.263077 CAAATGGACGAACTCGAGGAG 58.737 52.381 18.41 9.82 43.02 3.69
2591 6572 0.818296 AATGGACGAACTCGAGGAGG 59.182 55.000 18.41 7.34 43.02 4.30
2592 6573 0.034380 ATGGACGAACTCGAGGAGGA 60.034 55.000 18.41 0.00 43.02 3.71
2593 6574 0.034380 TGGACGAACTCGAGGAGGAT 60.034 55.000 18.41 0.00 43.02 3.24
2594 6575 0.664224 GGACGAACTCGAGGAGGATC 59.336 60.000 18.41 7.35 43.02 3.36
2595 6576 1.380524 GACGAACTCGAGGAGGATCA 58.619 55.000 18.41 0.00 43.02 2.92
2596 6577 1.743958 GACGAACTCGAGGAGGATCAA 59.256 52.381 18.41 0.00 43.02 2.57
2597 6578 2.163815 GACGAACTCGAGGAGGATCAAA 59.836 50.000 18.41 0.00 43.02 2.69
2598 6579 2.164624 ACGAACTCGAGGAGGATCAAAG 59.835 50.000 18.41 0.00 43.02 2.77
2599 6580 2.545731 GAACTCGAGGAGGATCAAAGC 58.454 52.381 18.41 0.00 36.25 3.51
2600 6581 0.827368 ACTCGAGGAGGATCAAAGCC 59.173 55.000 18.41 0.00 36.25 4.35
2601 6582 1.118838 CTCGAGGAGGATCAAAGCCT 58.881 55.000 3.91 0.00 38.81 4.58
2602 6583 0.826715 TCGAGGAGGATCAAAGCCTG 59.173 55.000 0.00 0.00 35.44 4.85
2603 6584 0.179062 CGAGGAGGATCAAAGCCTGG 60.179 60.000 0.00 0.00 35.44 4.45
2604 6585 1.207791 GAGGAGGATCAAAGCCTGGA 58.792 55.000 0.00 0.00 35.44 3.86
2605 6586 1.561542 GAGGAGGATCAAAGCCTGGAA 59.438 52.381 0.00 0.00 35.44 3.53
2606 6587 1.563410 AGGAGGATCAAAGCCTGGAAG 59.437 52.381 0.00 0.00 35.44 3.46
2607 6588 1.561542 GGAGGATCAAAGCCTGGAAGA 59.438 52.381 0.00 0.00 35.44 2.87
2608 6589 2.637947 GAGGATCAAAGCCTGGAAGAC 58.362 52.381 0.00 0.00 35.44 3.01
2609 6590 1.988107 AGGATCAAAGCCTGGAAGACA 59.012 47.619 0.00 0.00 34.07 3.41
2610 6591 2.376518 AGGATCAAAGCCTGGAAGACAA 59.623 45.455 0.00 0.00 34.07 3.18
2611 6592 3.011032 AGGATCAAAGCCTGGAAGACAAT 59.989 43.478 0.00 0.00 34.07 2.71
2612 6593 3.379688 GGATCAAAGCCTGGAAGACAATC 59.620 47.826 0.00 0.00 34.07 2.67
2613 6594 3.795688 TCAAAGCCTGGAAGACAATCT 57.204 42.857 0.00 0.00 34.07 2.40
2614 6595 3.679389 TCAAAGCCTGGAAGACAATCTC 58.321 45.455 0.00 0.00 34.07 2.75
2615 6596 2.393271 AAGCCTGGAAGACAATCTCG 57.607 50.000 0.00 0.00 34.07 4.04
2616 6597 1.561643 AGCCTGGAAGACAATCTCGA 58.438 50.000 0.00 0.00 34.07 4.04
2617 6598 1.902508 AGCCTGGAAGACAATCTCGAA 59.097 47.619 0.00 0.00 34.07 3.71
2618 6599 2.093764 AGCCTGGAAGACAATCTCGAAG 60.094 50.000 0.00 0.00 34.07 3.79
2619 6600 2.093973 GCCTGGAAGACAATCTCGAAGA 60.094 50.000 0.00 0.00 34.07 2.87
2620 6601 3.617531 GCCTGGAAGACAATCTCGAAGAA 60.618 47.826 0.00 0.00 34.07 2.52
2621 6602 3.929610 CCTGGAAGACAATCTCGAAGAAC 59.070 47.826 0.00 0.00 34.07 3.01
2622 6603 4.560128 CTGGAAGACAATCTCGAAGAACA 58.440 43.478 0.00 0.00 34.07 3.18
2623 6604 4.956085 TGGAAGACAATCTCGAAGAACAA 58.044 39.130 0.00 0.00 34.09 2.83
2624 6605 5.364778 TGGAAGACAATCTCGAAGAACAAA 58.635 37.500 0.00 0.00 34.09 2.83
2625 6606 5.236478 TGGAAGACAATCTCGAAGAACAAAC 59.764 40.000 0.00 0.00 34.09 2.93
2626 6607 5.236478 GGAAGACAATCTCGAAGAACAAACA 59.764 40.000 0.00 0.00 34.09 2.83
2627 6608 5.659048 AGACAATCTCGAAGAACAAACAC 57.341 39.130 0.00 0.00 34.09 3.32
2628 6609 4.511826 AGACAATCTCGAAGAACAAACACC 59.488 41.667 0.00 0.00 34.09 4.16
2629 6610 3.247648 ACAATCTCGAAGAACAAACACCG 59.752 43.478 0.00 0.00 34.09 4.94
2630 6611 1.214367 TCTCGAAGAACAAACACCGC 58.786 50.000 0.00 0.00 34.09 5.68
2631 6612 0.234884 CTCGAAGAACAAACACCGCC 59.765 55.000 0.00 0.00 34.09 6.13
2632 6613 0.462225 TCGAAGAACAAACACCGCCA 60.462 50.000 0.00 0.00 0.00 5.69
2633 6614 0.591170 CGAAGAACAAACACCGCCAT 59.409 50.000 0.00 0.00 0.00 4.40
2634 6615 1.399727 CGAAGAACAAACACCGCCATC 60.400 52.381 0.00 0.00 0.00 3.51
2635 6616 0.958822 AAGAACAAACACCGCCATCC 59.041 50.000 0.00 0.00 0.00 3.51
2636 6617 0.179004 AGAACAAACACCGCCATCCA 60.179 50.000 0.00 0.00 0.00 3.41
2637 6618 0.039527 GAACAAACACCGCCATCCAC 60.040 55.000 0.00 0.00 0.00 4.02
2638 6619 1.460273 AACAAACACCGCCATCCACC 61.460 55.000 0.00 0.00 0.00 4.61
2639 6620 2.282887 AAACACCGCCATCCACCC 60.283 61.111 0.00 0.00 0.00 4.61
2640 6621 4.715523 AACACCGCCATCCACCCG 62.716 66.667 0.00 0.00 0.00 5.28
2642 6623 4.838152 CACCGCCATCCACCCGAG 62.838 72.222 0.00 0.00 0.00 4.63
2655 6636 4.899239 CCGAGCGGCACCAGGATC 62.899 72.222 1.45 0.00 0.00 3.36
2656 6637 3.842923 CGAGCGGCACCAGGATCT 61.843 66.667 1.45 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 104 0.227234 CATCTCGTCACATAACGCGC 59.773 55.000 5.73 0.00 42.31 6.86
73 105 0.227234 GCATCTCGTCACATAACGCG 59.773 55.000 3.53 3.53 42.31 6.01
503 623 9.505995 TCGATTCACAAAATGTTCATGATTATG 57.494 29.630 0.00 0.00 35.57 1.90
727 1489 0.250038 CATATGTCAGTGGGCCGAGG 60.250 60.000 0.00 0.00 0.00 4.63
848 1640 5.468746 GCATATTGCTTTAATACGGTCCTGA 59.531 40.000 0.00 0.00 40.96 3.86
861 1653 5.244626 AGTCCTGAAACTTGCATATTGCTTT 59.755 36.000 0.75 0.00 45.31 3.51
870 1662 2.945008 CAACTCAGTCCTGAAACTTGCA 59.055 45.455 0.00 0.00 39.39 4.08
943 1735 3.921677 ACGATCGAAAAAGAAGTGCCTA 58.078 40.909 24.34 0.00 0.00 3.93
945 1737 3.537793 AACGATCGAAAAAGAAGTGCC 57.462 42.857 24.34 0.00 0.00 5.01
955 1747 0.711670 CGGCGAGAAAACGATCGAAA 59.288 50.000 24.34 0.00 41.40 3.46
975 1767 4.959596 GATCGAGGAGGCGCTGGC 62.960 72.222 7.64 0.00 38.90 4.85
1051 1850 2.663196 GGGGAAGTCGGTCAGTGG 59.337 66.667 0.00 0.00 0.00 4.00
1204 3121 1.352083 TCCAGAGGTGAGGAAAGTGG 58.648 55.000 0.00 0.00 0.00 4.00
1211 3129 0.684479 TCGGTGATCCAGAGGTGAGG 60.684 60.000 0.00 0.00 0.00 3.86
1230 3160 4.187694 GCGAAGAAGATTCATGAGAGGTT 58.812 43.478 0.00 0.00 0.00 3.50
1232 3162 2.793790 CGCGAAGAAGATTCATGAGAGG 59.206 50.000 0.00 0.00 0.00 3.69
1235 3165 6.516478 TTAATCGCGAAGAAGATTCATGAG 57.484 37.500 15.24 0.00 37.52 2.90
1246 3176 5.049336 TCAAACACCAAATTAATCGCGAAGA 60.049 36.000 15.24 0.00 0.00 2.87
1506 5168 4.346418 AGGAAGATAATGCGAGGTGAGATT 59.654 41.667 0.00 0.00 0.00 2.40
1656 5338 8.741603 AAAACGCCACTACTACCAAATATAAT 57.258 30.769 0.00 0.00 0.00 1.28
1666 5351 4.861462 GGACTAGAAAAACGCCACTACTAC 59.139 45.833 0.00 0.00 0.00 2.73
1667 5352 4.523943 TGGACTAGAAAAACGCCACTACTA 59.476 41.667 0.00 0.00 0.00 1.82
1668 5353 3.322828 TGGACTAGAAAAACGCCACTACT 59.677 43.478 0.00 0.00 0.00 2.57
1669 5354 3.656559 TGGACTAGAAAAACGCCACTAC 58.343 45.455 0.00 0.00 0.00 2.73
1697 5382 9.483062 CAACTCATTTTCTTCTTCTTATTAGCG 57.517 33.333 0.00 0.00 0.00 4.26
1900 5647 5.405935 AATCAATACTGAAAAACCTGGCC 57.594 39.130 0.00 0.00 34.49 5.36
1921 5668 5.200483 AGGTCAATTCTCTTGTGGACAAAA 58.800 37.500 0.00 0.00 35.15 2.44
1971 5940 4.870123 TTTCATGGTTGAGTTCCATTGG 57.130 40.909 0.00 0.00 42.92 3.16
2108 6082 3.941483 CTGATATGGTCCTTTCCACACAC 59.059 47.826 0.00 0.00 40.51 3.82
2109 6083 3.587061 ACTGATATGGTCCTTTCCACACA 59.413 43.478 0.00 0.00 40.51 3.72
2110 6084 4.222124 ACTGATATGGTCCTTTCCACAC 57.778 45.455 0.00 0.00 40.51 3.82
2113 6087 9.627123 CTTTTATAACTGATATGGTCCTTTCCA 57.373 33.333 0.00 0.00 42.01 3.53
2139 6113 7.526608 TGAGATGTTTTGTATTTCCGATGAAC 58.473 34.615 0.00 0.00 0.00 3.18
2193 6174 1.135170 GTTCTGGCGGTAGTAGTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
2208 6189 1.853319 GTGTCGACGGCTTGTTCTG 59.147 57.895 11.62 0.00 0.00 3.02
2230 6211 1.300481 GATAAGGAAGCAGCGGGAAC 58.700 55.000 0.00 0.00 0.00 3.62
2233 6214 1.595382 CCGATAAGGAAGCAGCGGG 60.595 63.158 0.00 0.00 45.00 6.13
2234 6215 4.033894 CCGATAAGGAAGCAGCGG 57.966 61.111 0.00 0.00 45.00 5.52
2245 6226 1.906574 AGGTCAAACCAGCTCCGATAA 59.093 47.619 0.00 0.00 41.95 1.75
2255 6236 4.884668 AGAGTTCGATAAGGTCAAACCA 57.115 40.909 0.00 0.00 41.95 3.67
2257 6238 4.451096 TGCAAGAGTTCGATAAGGTCAAAC 59.549 41.667 0.00 0.00 0.00 2.93
2258 6239 4.637276 TGCAAGAGTTCGATAAGGTCAAA 58.363 39.130 0.00 0.00 0.00 2.69
2265 6246 5.282055 AGATCCATGCAAGAGTTCGATAA 57.718 39.130 0.00 0.00 0.00 1.75
2267 6248 3.834489 AGATCCATGCAAGAGTTCGAT 57.166 42.857 0.00 0.00 0.00 3.59
2274 6255 0.249447 CGGCGTAGATCCATGCAAGA 60.249 55.000 7.65 0.00 31.76 3.02
2292 6273 1.749634 AGATTCCTACCGTCAACTCCG 59.250 52.381 0.00 0.00 0.00 4.63
2293 6274 3.952967 AGTAGATTCCTACCGTCAACTCC 59.047 47.826 0.00 0.00 44.92 3.85
2294 6275 4.883006 AGAGTAGATTCCTACCGTCAACTC 59.117 45.833 0.00 0.00 44.92 3.01
2295 6276 4.641094 CAGAGTAGATTCCTACCGTCAACT 59.359 45.833 0.00 0.00 44.92 3.16
2296 6277 4.202030 CCAGAGTAGATTCCTACCGTCAAC 60.202 50.000 0.00 0.00 44.92 3.18
2297 6278 3.952323 CCAGAGTAGATTCCTACCGTCAA 59.048 47.826 0.00 0.00 44.92 3.18
2298 6279 3.201487 TCCAGAGTAGATTCCTACCGTCA 59.799 47.826 0.00 0.00 44.92 4.35
2299 6280 3.816523 CTCCAGAGTAGATTCCTACCGTC 59.183 52.174 0.00 0.00 44.92 4.79
2300 6281 3.202595 ACTCCAGAGTAGATTCCTACCGT 59.797 47.826 0.00 0.00 44.92 4.83
2301 6282 3.566322 CACTCCAGAGTAGATTCCTACCG 59.434 52.174 0.00 0.00 44.92 4.02
2302 6283 4.794334 TCACTCCAGAGTAGATTCCTACC 58.206 47.826 0.00 0.00 44.92 3.18
2303 6284 5.442391 ACTCACTCCAGAGTAGATTCCTAC 58.558 45.833 0.00 0.00 46.52 3.18
2304 6285 5.718801 ACTCACTCCAGAGTAGATTCCTA 57.281 43.478 0.00 0.00 46.52 2.94
2305 6286 4.601406 ACTCACTCCAGAGTAGATTCCT 57.399 45.455 0.00 0.00 46.52 3.36
2312 6293 3.329814 TGACCACTACTCACTCCAGAGTA 59.670 47.826 0.00 4.04 46.52 2.59
2314 6295 2.752354 CTGACCACTACTCACTCCAGAG 59.248 54.545 0.00 0.00 41.44 3.35
2315 6296 2.108425 ACTGACCACTACTCACTCCAGA 59.892 50.000 0.00 0.00 0.00 3.86
2316 6297 2.520069 ACTGACCACTACTCACTCCAG 58.480 52.381 0.00 0.00 0.00 3.86
2317 6298 2.677542 ACTGACCACTACTCACTCCA 57.322 50.000 0.00 0.00 0.00 3.86
2318 6299 3.444388 CCTAACTGACCACTACTCACTCC 59.556 52.174 0.00 0.00 0.00 3.85
2319 6300 4.080687 ACCTAACTGACCACTACTCACTC 58.919 47.826 0.00 0.00 0.00 3.51
2320 6301 4.115398 ACCTAACTGACCACTACTCACT 57.885 45.455 0.00 0.00 0.00 3.41
2321 6302 4.038883 ACAACCTAACTGACCACTACTCAC 59.961 45.833 0.00 0.00 0.00 3.51
2322 6303 4.220724 ACAACCTAACTGACCACTACTCA 58.779 43.478 0.00 0.00 0.00 3.41
2323 6304 4.868314 ACAACCTAACTGACCACTACTC 57.132 45.455 0.00 0.00 0.00 2.59
2324 6305 5.392125 AGTACAACCTAACTGACCACTACT 58.608 41.667 0.00 0.00 0.00 2.57
2325 6306 5.718724 AGTACAACCTAACTGACCACTAC 57.281 43.478 0.00 0.00 0.00 2.73
2326 6307 5.244626 GGAAGTACAACCTAACTGACCACTA 59.755 44.000 0.00 0.00 0.00 2.74
2327 6308 4.040095 GGAAGTACAACCTAACTGACCACT 59.960 45.833 0.00 0.00 0.00 4.00
2328 6309 4.040095 AGGAAGTACAACCTAACTGACCAC 59.960 45.833 8.74 0.00 34.47 4.16
2329 6310 4.228824 AGGAAGTACAACCTAACTGACCA 58.771 43.478 8.74 0.00 34.47 4.02
2330 6311 4.617762 CGAGGAAGTACAACCTAACTGACC 60.618 50.000 10.17 0.00 36.57 4.02
2331 6312 4.483311 CGAGGAAGTACAACCTAACTGAC 58.517 47.826 10.17 0.00 36.57 3.51
2332 6313 3.057033 GCGAGGAAGTACAACCTAACTGA 60.057 47.826 10.17 0.00 36.57 3.41
2333 6314 3.251571 GCGAGGAAGTACAACCTAACTG 58.748 50.000 10.17 3.96 36.57 3.16
2334 6315 2.233186 GGCGAGGAAGTACAACCTAACT 59.767 50.000 10.17 0.00 36.57 2.24
2335 6316 2.233186 AGGCGAGGAAGTACAACCTAAC 59.767 50.000 10.17 6.31 36.57 2.34
2336 6317 2.532843 AGGCGAGGAAGTACAACCTAA 58.467 47.619 10.17 0.00 36.57 2.69
2337 6318 2.226962 AGGCGAGGAAGTACAACCTA 57.773 50.000 10.17 0.00 36.57 3.08
2338 6319 2.226962 TAGGCGAGGAAGTACAACCT 57.773 50.000 10.01 10.01 39.41 3.50
2339 6320 2.233186 AGTTAGGCGAGGAAGTACAACC 59.767 50.000 0.00 0.00 0.00 3.77
2340 6321 3.251571 CAGTTAGGCGAGGAAGTACAAC 58.748 50.000 0.00 0.00 0.00 3.32
2341 6322 2.353406 GCAGTTAGGCGAGGAAGTACAA 60.353 50.000 0.00 0.00 0.00 2.41
2342 6323 1.203994 GCAGTTAGGCGAGGAAGTACA 59.796 52.381 0.00 0.00 0.00 2.90
2343 6324 1.477295 AGCAGTTAGGCGAGGAAGTAC 59.523 52.381 0.00 0.00 39.27 2.73
2344 6325 1.848652 AGCAGTTAGGCGAGGAAGTA 58.151 50.000 0.00 0.00 39.27 2.24
2345 6326 0.977395 AAGCAGTTAGGCGAGGAAGT 59.023 50.000 0.00 0.00 39.27 3.01
2346 6327 1.734465 CAAAGCAGTTAGGCGAGGAAG 59.266 52.381 0.00 0.00 39.27 3.46
2347 6328 1.610624 CCAAAGCAGTTAGGCGAGGAA 60.611 52.381 0.00 0.00 39.27 3.36
2348 6329 0.036388 CCAAAGCAGTTAGGCGAGGA 60.036 55.000 0.00 0.00 39.27 3.71
2349 6330 1.026718 CCCAAAGCAGTTAGGCGAGG 61.027 60.000 0.00 0.00 39.27 4.63
2350 6331 1.648467 GCCCAAAGCAGTTAGGCGAG 61.648 60.000 0.00 0.00 42.97 5.03
2351 6332 1.674322 GCCCAAAGCAGTTAGGCGA 60.674 57.895 0.00 0.00 42.97 5.54
2352 6333 2.700773 GGCCCAAAGCAGTTAGGCG 61.701 63.158 0.00 0.00 46.50 5.52
2353 6334 0.034477 TAGGCCCAAAGCAGTTAGGC 60.034 55.000 0.00 1.69 46.50 3.93
2354 6335 2.019156 GCTAGGCCCAAAGCAGTTAGG 61.019 57.143 15.52 0.00 46.50 2.69
2355 6336 1.383523 GCTAGGCCCAAAGCAGTTAG 58.616 55.000 15.52 2.00 46.50 2.34
2356 6337 0.392461 CGCTAGGCCCAAAGCAGTTA 60.392 55.000 19.15 0.00 46.50 2.24
2357 6338 1.675641 CGCTAGGCCCAAAGCAGTT 60.676 57.895 19.15 0.00 46.50 3.16
2358 6339 2.045926 CGCTAGGCCCAAAGCAGT 60.046 61.111 19.15 0.00 46.50 4.40
2359 6340 3.512516 GCGCTAGGCCCAAAGCAG 61.513 66.667 19.15 13.51 46.50 4.24
2360 6341 3.976701 GAGCGCTAGGCCCAAAGCA 62.977 63.158 11.50 0.00 46.50 3.91
2361 6342 3.205536 GAGCGCTAGGCCCAAAGC 61.206 66.667 11.50 11.41 45.17 3.51
2362 6343 2.514824 GGAGCGCTAGGCCCAAAG 60.515 66.667 11.50 0.00 45.17 2.77
2363 6344 3.009115 AGGAGCGCTAGGCCCAAA 61.009 61.111 11.50 0.00 45.17 3.28
2364 6345 3.785859 CAGGAGCGCTAGGCCCAA 61.786 66.667 11.50 0.00 45.17 4.12
2366 6347 4.537433 CACAGGAGCGCTAGGCCC 62.537 72.222 11.50 7.48 45.17 5.80
2367 6348 3.724914 GACACAGGAGCGCTAGGCC 62.725 68.421 11.50 7.94 45.17 5.19
2368 6349 2.202810 GACACAGGAGCGCTAGGC 60.203 66.667 11.50 0.00 44.05 3.93
2369 6350 1.140589 CAGACACAGGAGCGCTAGG 59.859 63.158 11.50 5.23 0.00 3.02
2370 6351 1.140589 CCAGACACAGGAGCGCTAG 59.859 63.158 11.50 6.11 0.00 3.42
2371 6352 3.006756 GCCAGACACAGGAGCGCTA 62.007 63.158 11.50 0.00 0.00 4.26
2372 6353 4.385405 GCCAGACACAGGAGCGCT 62.385 66.667 11.27 11.27 0.00 5.92
2375 6356 1.812922 CATCGCCAGACACAGGAGC 60.813 63.158 0.00 0.00 0.00 4.70
2376 6357 0.463204 ATCATCGCCAGACACAGGAG 59.537 55.000 0.00 0.00 0.00 3.69
2377 6358 0.176449 CATCATCGCCAGACACAGGA 59.824 55.000 0.00 0.00 0.00 3.86
2378 6359 0.107993 ACATCATCGCCAGACACAGG 60.108 55.000 0.00 0.00 0.00 4.00
2379 6360 1.284657 GACATCATCGCCAGACACAG 58.715 55.000 0.00 0.00 0.00 3.66
2380 6361 0.108186 GGACATCATCGCCAGACACA 60.108 55.000 0.00 0.00 0.00 3.72
2381 6362 0.811616 GGGACATCATCGCCAGACAC 60.812 60.000 0.00 0.00 34.15 3.67
2382 6363 0.977627 AGGGACATCATCGCCAGACA 60.978 55.000 0.00 0.00 41.22 3.41
2383 6364 0.179000 AAGGGACATCATCGCCAGAC 59.821 55.000 0.00 0.00 41.22 3.51
2384 6365 0.178767 CAAGGGACATCATCGCCAGA 59.821 55.000 0.00 0.00 41.22 3.86
2385 6366 0.178767 TCAAGGGACATCATCGCCAG 59.821 55.000 0.00 0.00 41.22 4.85
2386 6367 0.839277 ATCAAGGGACATCATCGCCA 59.161 50.000 0.00 0.00 41.22 5.69
2387 6368 1.233019 CATCAAGGGACATCATCGCC 58.767 55.000 0.00 0.00 41.22 5.54
2388 6369 0.590195 GCATCAAGGGACATCATCGC 59.410 55.000 0.00 0.00 40.60 4.58
2389 6370 1.871676 CAGCATCAAGGGACATCATCG 59.128 52.381 0.00 0.00 0.00 3.84
2390 6371 1.607628 GCAGCATCAAGGGACATCATC 59.392 52.381 0.00 0.00 0.00 2.92
2391 6372 1.064240 TGCAGCATCAAGGGACATCAT 60.064 47.619 0.00 0.00 0.00 2.45
2392 6373 0.328926 TGCAGCATCAAGGGACATCA 59.671 50.000 0.00 0.00 0.00 3.07
2393 6374 1.688772 ATGCAGCATCAAGGGACATC 58.311 50.000 0.52 0.00 0.00 3.06
2394 6375 2.154567 AATGCAGCATCAAGGGACAT 57.845 45.000 8.77 0.00 0.00 3.06
2395 6376 1.546923 CAAATGCAGCATCAAGGGACA 59.453 47.619 8.77 0.00 0.00 4.02
2396 6377 1.547372 ACAAATGCAGCATCAAGGGAC 59.453 47.619 8.77 0.00 0.00 4.46
2397 6378 1.820519 GACAAATGCAGCATCAAGGGA 59.179 47.619 8.77 0.00 0.00 4.20
2398 6379 1.822990 AGACAAATGCAGCATCAAGGG 59.177 47.619 8.77 0.00 0.00 3.95
2399 6380 3.250744 CAAGACAAATGCAGCATCAAGG 58.749 45.455 8.77 1.28 0.00 3.61
2400 6381 3.909430 ACAAGACAAATGCAGCATCAAG 58.091 40.909 8.77 4.27 0.00 3.02
2401 6382 3.318557 TGACAAGACAAATGCAGCATCAA 59.681 39.130 8.77 0.00 0.00 2.57
2402 6383 2.885894 TGACAAGACAAATGCAGCATCA 59.114 40.909 8.77 0.00 0.00 3.07
2403 6384 3.499048 CTGACAAGACAAATGCAGCATC 58.501 45.455 8.77 0.00 0.00 3.91
2404 6385 2.352421 GCTGACAAGACAAATGCAGCAT 60.352 45.455 0.52 0.52 42.34 3.79
2405 6386 1.001048 GCTGACAAGACAAATGCAGCA 60.001 47.619 0.00 0.00 42.34 4.41
2406 6387 1.268899 AGCTGACAAGACAAATGCAGC 59.731 47.619 0.00 0.00 42.72 5.25
2407 6388 3.637998 AAGCTGACAAGACAAATGCAG 57.362 42.857 0.00 0.00 0.00 4.41
2408 6389 3.633525 AGAAAGCTGACAAGACAAATGCA 59.366 39.130 0.00 0.00 0.00 3.96
2409 6390 4.234530 AGAAAGCTGACAAGACAAATGC 57.765 40.909 0.00 0.00 0.00 3.56
2410 6391 7.529880 AAAAAGAAAGCTGACAAGACAAATG 57.470 32.000 0.00 0.00 0.00 2.32
2433 6414 7.121315 ACCGAATGAAAACCCAAAAATGAAAAA 59.879 29.630 0.00 0.00 0.00 1.94
2434 6415 6.599638 ACCGAATGAAAACCCAAAAATGAAAA 59.400 30.769 0.00 0.00 0.00 2.29
2435 6416 6.116126 ACCGAATGAAAACCCAAAAATGAAA 58.884 32.000 0.00 0.00 0.00 2.69
2436 6417 5.675538 ACCGAATGAAAACCCAAAAATGAA 58.324 33.333 0.00 0.00 0.00 2.57
2437 6418 5.283457 ACCGAATGAAAACCCAAAAATGA 57.717 34.783 0.00 0.00 0.00 2.57
2438 6419 6.370433 AAACCGAATGAAAACCCAAAAATG 57.630 33.333 0.00 0.00 0.00 2.32
2439 6420 6.038825 GGAAAACCGAATGAAAACCCAAAAAT 59.961 34.615 0.00 0.00 0.00 1.82
2440 6421 5.354513 GGAAAACCGAATGAAAACCCAAAAA 59.645 36.000 0.00 0.00 0.00 1.94
2441 6422 4.876679 GGAAAACCGAATGAAAACCCAAAA 59.123 37.500 0.00 0.00 0.00 2.44
2442 6423 4.443621 GGAAAACCGAATGAAAACCCAAA 58.556 39.130 0.00 0.00 0.00 3.28
2443 6424 3.181464 GGGAAAACCGAATGAAAACCCAA 60.181 43.478 0.00 0.00 35.41 4.12
2444 6425 2.365941 GGGAAAACCGAATGAAAACCCA 59.634 45.455 0.00 0.00 35.41 4.51
2445 6426 2.631062 AGGGAAAACCGAATGAAAACCC 59.369 45.455 0.00 0.00 46.96 4.11
2446 6427 3.554129 CCAGGGAAAACCGAATGAAAACC 60.554 47.826 0.00 0.00 46.96 3.27
2447 6428 3.319689 TCCAGGGAAAACCGAATGAAAAC 59.680 43.478 0.00 0.00 46.96 2.43
2448 6429 3.319689 GTCCAGGGAAAACCGAATGAAAA 59.680 43.478 0.00 0.00 46.96 2.29
2449 6430 2.888414 GTCCAGGGAAAACCGAATGAAA 59.112 45.455 0.00 0.00 46.96 2.69
2450 6431 2.510613 GTCCAGGGAAAACCGAATGAA 58.489 47.619 0.00 0.00 46.96 2.57
2451 6432 1.271707 GGTCCAGGGAAAACCGAATGA 60.272 52.381 0.00 0.00 46.96 2.57
2452 6433 1.173913 GGTCCAGGGAAAACCGAATG 58.826 55.000 0.00 0.00 46.96 2.67
2453 6434 0.774908 TGGTCCAGGGAAAACCGAAT 59.225 50.000 0.00 0.00 46.96 3.34
2454 6435 0.551879 TTGGTCCAGGGAAAACCGAA 59.448 50.000 0.00 0.00 46.96 4.30
2455 6436 0.551879 TTTGGTCCAGGGAAAACCGA 59.448 50.000 0.00 0.00 46.96 4.69
2456 6437 0.671796 GTTTGGTCCAGGGAAAACCG 59.328 55.000 4.87 0.00 46.96 4.44
2457 6438 1.961394 GAGTTTGGTCCAGGGAAAACC 59.039 52.381 10.53 1.30 40.67 3.27
2458 6439 2.885266 GAGAGTTTGGTCCAGGGAAAAC 59.115 50.000 7.30 7.30 33.65 2.43
2459 6440 2.783510 AGAGAGTTTGGTCCAGGGAAAA 59.216 45.455 0.00 0.00 0.00 2.29
2460 6441 2.418669 AGAGAGTTTGGTCCAGGGAAA 58.581 47.619 0.00 0.00 0.00 3.13
2461 6442 2.118403 AGAGAGTTTGGTCCAGGGAA 57.882 50.000 0.00 0.00 0.00 3.97
2462 6443 1.978580 GAAGAGAGTTTGGTCCAGGGA 59.021 52.381 0.00 0.00 0.00 4.20
2463 6444 1.981495 AGAAGAGAGTTTGGTCCAGGG 59.019 52.381 0.00 0.00 0.00 4.45
2464 6445 3.326297 AGAAGAAGAGAGTTTGGTCCAGG 59.674 47.826 0.00 0.00 0.00 4.45
2465 6446 4.615588 AGAAGAAGAGAGTTTGGTCCAG 57.384 45.455 0.00 0.00 0.00 3.86
2466 6447 6.494666 TTAAGAAGAAGAGAGTTTGGTCCA 57.505 37.500 0.00 0.00 0.00 4.02
2467 6448 7.162082 TGATTAAGAAGAAGAGAGTTTGGTCC 58.838 38.462 0.00 0.00 0.00 4.46
2468 6449 8.608844 TTGATTAAGAAGAAGAGAGTTTGGTC 57.391 34.615 0.00 0.00 0.00 4.02
2469 6450 8.980481 TTTGATTAAGAAGAAGAGAGTTTGGT 57.020 30.769 0.00 0.00 0.00 3.67
2470 6451 9.837525 CATTTGATTAAGAAGAAGAGAGTTTGG 57.162 33.333 0.00 0.00 0.00 3.28
2471 6452 9.339492 GCATTTGATTAAGAAGAAGAGAGTTTG 57.661 33.333 0.00 0.00 0.00 2.93
2472 6453 8.233190 CGCATTTGATTAAGAAGAAGAGAGTTT 58.767 33.333 0.00 0.00 0.00 2.66
2473 6454 7.148340 CCGCATTTGATTAAGAAGAAGAGAGTT 60.148 37.037 0.00 0.00 0.00 3.01
2474 6455 6.314896 CCGCATTTGATTAAGAAGAAGAGAGT 59.685 38.462 0.00 0.00 0.00 3.24
2475 6456 6.238320 CCCGCATTTGATTAAGAAGAAGAGAG 60.238 42.308 0.00 0.00 0.00 3.20
2476 6457 5.586243 CCCGCATTTGATTAAGAAGAAGAGA 59.414 40.000 0.00 0.00 0.00 3.10
2477 6458 5.586243 TCCCGCATTTGATTAAGAAGAAGAG 59.414 40.000 0.00 0.00 0.00 2.85
2478 6459 5.496556 TCCCGCATTTGATTAAGAAGAAGA 58.503 37.500 0.00 0.00 0.00 2.87
2479 6460 5.818136 TCCCGCATTTGATTAAGAAGAAG 57.182 39.130 0.00 0.00 0.00 2.85
2480 6461 5.105917 GGTTCCCGCATTTGATTAAGAAGAA 60.106 40.000 0.00 0.00 0.00 2.52
2481 6462 4.398044 GGTTCCCGCATTTGATTAAGAAGA 59.602 41.667 0.00 0.00 0.00 2.87
2482 6463 4.440112 GGGTTCCCGCATTTGATTAAGAAG 60.440 45.833 0.00 0.00 0.00 2.85
2483 6464 3.445805 GGGTTCCCGCATTTGATTAAGAA 59.554 43.478 0.00 0.00 0.00 2.52
2484 6465 3.020984 GGGTTCCCGCATTTGATTAAGA 58.979 45.455 0.00 0.00 0.00 2.10
2485 6466 2.100749 GGGGTTCCCGCATTTGATTAAG 59.899 50.000 1.48 0.00 36.42 1.85
2486 6467 2.104170 GGGGTTCCCGCATTTGATTAA 58.896 47.619 1.48 0.00 36.42 1.40
2487 6468 1.686741 GGGGGTTCCCGCATTTGATTA 60.687 52.381 18.15 0.00 46.66 1.75
2488 6469 0.975556 GGGGGTTCCCGCATTTGATT 60.976 55.000 18.15 0.00 46.66 2.57
2489 6470 1.381191 GGGGGTTCCCGCATTTGAT 60.381 57.895 18.15 0.00 46.66 2.57
2490 6471 2.036572 GGGGGTTCCCGCATTTGA 59.963 61.111 18.15 0.00 46.66 2.69
2499 6480 4.048470 GTGAGGGCAGGGGGTTCC 62.048 72.222 0.00 0.00 0.00 3.62
2500 6481 3.256960 TGTGAGGGCAGGGGGTTC 61.257 66.667 0.00 0.00 0.00 3.62
2501 6482 3.580319 GTGTGAGGGCAGGGGGTT 61.580 66.667 0.00 0.00 0.00 4.11
2502 6483 4.918360 TGTGTGAGGGCAGGGGGT 62.918 66.667 0.00 0.00 0.00 4.95
2503 6484 3.574074 CTTGTGTGAGGGCAGGGGG 62.574 68.421 0.00 0.00 0.00 5.40
2504 6485 2.034687 CTTGTGTGAGGGCAGGGG 59.965 66.667 0.00 0.00 0.00 4.79
2505 6486 2.034687 CCTTGTGTGAGGGCAGGG 59.965 66.667 0.00 0.00 32.94 4.45
2506 6487 0.468029 AAACCTTGTGTGAGGGCAGG 60.468 55.000 0.00 0.00 41.31 4.85
2507 6488 2.270352 TAAACCTTGTGTGAGGGCAG 57.730 50.000 0.00 0.00 41.31 4.85
2508 6489 2.554344 GGATAAACCTTGTGTGAGGGCA 60.554 50.000 0.00 0.00 41.31 5.36
2509 6490 2.092323 GGATAAACCTTGTGTGAGGGC 58.908 52.381 0.00 0.00 41.31 5.19
2510 6491 3.433306 TGGATAAACCTTGTGTGAGGG 57.567 47.619 0.00 0.00 41.31 4.30
2511 6492 5.782893 TTTTGGATAAACCTTGTGTGAGG 57.217 39.130 0.00 0.00 42.75 3.86
2533 6514 5.125578 GGAGTTTCGGCATAGATTCCTTTTT 59.874 40.000 0.00 0.00 0.00 1.94
2534 6515 4.640647 GGAGTTTCGGCATAGATTCCTTTT 59.359 41.667 0.00 0.00 0.00 2.27
2535 6516 4.200092 GGAGTTTCGGCATAGATTCCTTT 58.800 43.478 0.00 0.00 0.00 3.11
2536 6517 3.741388 CGGAGTTTCGGCATAGATTCCTT 60.741 47.826 0.00 0.00 0.00 3.36
2537 6518 2.224066 CGGAGTTTCGGCATAGATTCCT 60.224 50.000 0.00 0.00 0.00 3.36
2538 6519 2.135933 CGGAGTTTCGGCATAGATTCC 58.864 52.381 0.00 0.00 0.00 3.01
2539 6520 2.822764 ACGGAGTTTCGGCATAGATTC 58.177 47.619 0.00 0.00 37.78 2.52
2540 6521 2.981859 ACGGAGTTTCGGCATAGATT 57.018 45.000 0.00 0.00 37.78 2.40
2568 6549 1.067142 CCTCGAGTTCGTCCATTTGGA 60.067 52.381 12.31 0.00 39.02 3.53
2569 6550 1.067142 TCCTCGAGTTCGTCCATTTGG 60.067 52.381 12.31 0.00 40.80 3.28
2570 6551 2.263077 CTCCTCGAGTTCGTCCATTTG 58.737 52.381 12.31 0.00 40.80 2.32
2571 6552 1.204941 CCTCCTCGAGTTCGTCCATTT 59.795 52.381 12.31 0.00 40.80 2.32
2572 6553 0.818296 CCTCCTCGAGTTCGTCCATT 59.182 55.000 12.31 0.00 40.80 3.16
2573 6554 0.034380 TCCTCCTCGAGTTCGTCCAT 60.034 55.000 12.31 0.00 40.80 3.41
2574 6555 0.034380 ATCCTCCTCGAGTTCGTCCA 60.034 55.000 12.31 0.00 40.80 4.02
2575 6556 0.664224 GATCCTCCTCGAGTTCGTCC 59.336 60.000 12.31 0.00 40.80 4.79
2576 6557 1.380524 TGATCCTCCTCGAGTTCGTC 58.619 55.000 12.31 3.65 40.80 4.20
2577 6558 1.835494 TTGATCCTCCTCGAGTTCGT 58.165 50.000 12.31 0.00 40.80 3.85
2578 6559 2.803451 CTTTGATCCTCCTCGAGTTCG 58.197 52.381 12.31 0.00 41.45 3.95
2579 6560 2.545731 GCTTTGATCCTCCTCGAGTTC 58.454 52.381 12.31 1.07 0.00 3.01
2580 6561 1.208293 GGCTTTGATCCTCCTCGAGTT 59.792 52.381 12.31 0.00 0.00 3.01
2581 6562 0.827368 GGCTTTGATCCTCCTCGAGT 59.173 55.000 12.31 0.00 0.00 4.18
2582 6563 1.118838 AGGCTTTGATCCTCCTCGAG 58.881 55.000 5.13 5.13 0.00 4.04
2583 6564 0.826715 CAGGCTTTGATCCTCCTCGA 59.173 55.000 0.00 0.00 0.00 4.04
2584 6565 0.179062 CCAGGCTTTGATCCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
2585 6566 1.207791 TCCAGGCTTTGATCCTCCTC 58.792 55.000 0.00 0.00 0.00 3.71
2586 6567 1.563410 CTTCCAGGCTTTGATCCTCCT 59.437 52.381 0.00 0.00 0.00 3.69
2587 6568 1.561542 TCTTCCAGGCTTTGATCCTCC 59.438 52.381 0.00 0.00 0.00 4.30
2588 6569 2.026822 TGTCTTCCAGGCTTTGATCCTC 60.027 50.000 0.00 0.00 0.00 3.71
2589 6570 1.988107 TGTCTTCCAGGCTTTGATCCT 59.012 47.619 0.00 0.00 0.00 3.24
2590 6571 2.496899 TGTCTTCCAGGCTTTGATCC 57.503 50.000 0.00 0.00 0.00 3.36
2591 6572 4.268359 AGATTGTCTTCCAGGCTTTGATC 58.732 43.478 0.00 0.00 0.00 2.92
2592 6573 4.268359 GAGATTGTCTTCCAGGCTTTGAT 58.732 43.478 0.00 0.00 0.00 2.57
2593 6574 3.679389 GAGATTGTCTTCCAGGCTTTGA 58.321 45.455 0.00 0.00 0.00 2.69
2594 6575 2.417933 CGAGATTGTCTTCCAGGCTTTG 59.582 50.000 0.00 0.00 0.00 2.77
2595 6576 2.303022 TCGAGATTGTCTTCCAGGCTTT 59.697 45.455 0.00 0.00 0.00 3.51
2596 6577 1.902508 TCGAGATTGTCTTCCAGGCTT 59.097 47.619 0.00 0.00 0.00 4.35
2597 6578 1.561643 TCGAGATTGTCTTCCAGGCT 58.438 50.000 0.00 0.00 0.00 4.58
2598 6579 2.093973 TCTTCGAGATTGTCTTCCAGGC 60.094 50.000 0.00 0.00 0.00 4.85
2599 6580 3.876274 TCTTCGAGATTGTCTTCCAGG 57.124 47.619 0.00 0.00 0.00 4.45
2600 6581 4.560128 TGTTCTTCGAGATTGTCTTCCAG 58.440 43.478 0.00 0.00 0.00 3.86
2601 6582 4.600692 TGTTCTTCGAGATTGTCTTCCA 57.399 40.909 0.00 0.00 0.00 3.53
2602 6583 5.236478 TGTTTGTTCTTCGAGATTGTCTTCC 59.764 40.000 0.00 0.00 0.00 3.46
2603 6584 6.130058 GTGTTTGTTCTTCGAGATTGTCTTC 58.870 40.000 0.00 0.00 0.00 2.87
2604 6585 5.007724 GGTGTTTGTTCTTCGAGATTGTCTT 59.992 40.000 0.00 0.00 0.00 3.01
2605 6586 4.511826 GGTGTTTGTTCTTCGAGATTGTCT 59.488 41.667 0.00 0.00 0.00 3.41
2606 6587 4.608445 CGGTGTTTGTTCTTCGAGATTGTC 60.608 45.833 0.00 0.00 0.00 3.18
2607 6588 3.247648 CGGTGTTTGTTCTTCGAGATTGT 59.752 43.478 0.00 0.00 0.00 2.71
2608 6589 3.799035 CGGTGTTTGTTCTTCGAGATTG 58.201 45.455 0.00 0.00 0.00 2.67
2609 6590 2.223377 GCGGTGTTTGTTCTTCGAGATT 59.777 45.455 0.00 0.00 0.00 2.40
2610 6591 1.798813 GCGGTGTTTGTTCTTCGAGAT 59.201 47.619 0.00 0.00 0.00 2.75
2611 6592 1.214367 GCGGTGTTTGTTCTTCGAGA 58.786 50.000 0.00 0.00 0.00 4.04
2612 6593 0.234884 GGCGGTGTTTGTTCTTCGAG 59.765 55.000 0.00 0.00 0.00 4.04
2613 6594 0.462225 TGGCGGTGTTTGTTCTTCGA 60.462 50.000 0.00 0.00 0.00 3.71
2614 6595 0.591170 ATGGCGGTGTTTGTTCTTCG 59.409 50.000 0.00 0.00 0.00 3.79
2615 6596 1.068541 GGATGGCGGTGTTTGTTCTTC 60.069 52.381 0.00 0.00 0.00 2.87
2616 6597 0.958822 GGATGGCGGTGTTTGTTCTT 59.041 50.000 0.00 0.00 0.00 2.52
2617 6598 0.179004 TGGATGGCGGTGTTTGTTCT 60.179 50.000 0.00 0.00 0.00 3.01
2618 6599 0.039527 GTGGATGGCGGTGTTTGTTC 60.040 55.000 0.00 0.00 0.00 3.18
2619 6600 1.460273 GGTGGATGGCGGTGTTTGTT 61.460 55.000 0.00 0.00 0.00 2.83
2620 6601 1.901464 GGTGGATGGCGGTGTTTGT 60.901 57.895 0.00 0.00 0.00 2.83
2621 6602 2.635443 GGGTGGATGGCGGTGTTTG 61.635 63.158 0.00 0.00 0.00 2.93
2622 6603 2.282887 GGGTGGATGGCGGTGTTT 60.283 61.111 0.00 0.00 0.00 2.83
2623 6604 4.715523 CGGGTGGATGGCGGTGTT 62.716 66.667 0.00 0.00 0.00 3.32
2625 6606 4.838152 CTCGGGTGGATGGCGGTG 62.838 72.222 0.00 0.00 0.00 4.94
2638 6619 4.899239 GATCCTGGTGCCGCTCGG 62.899 72.222 3.56 3.56 38.57 4.63
2639 6620 3.842923 AGATCCTGGTGCCGCTCG 61.843 66.667 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.