Multiple sequence alignment - TraesCS2D01G406600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G406600 chr2D 100.000 4507 0 0 1 4507 521764473 521759967 0.000000e+00 8323.0
1 TraesCS2D01G406600 chr2D 89.403 3501 316 38 865 4332 521588423 521584945 0.000000e+00 4359.0
2 TraesCS2D01G406600 chr2D 90.891 2536 191 27 901 3402 521581019 521578490 0.000000e+00 3367.0
3 TraesCS2D01G406600 chr2D 85.173 1504 165 28 1131 2607 521873299 521871827 0.000000e+00 1489.0
4 TraesCS2D01G406600 chr2D 87.477 1078 121 10 2437 3509 521784546 521783478 0.000000e+00 1230.0
5 TraesCS2D01G406600 chr2D 89.027 884 88 3 2596 3478 521869084 521868209 0.000000e+00 1086.0
6 TraesCS2D01G406600 chr2D 83.385 969 130 7 1478 2432 521790837 521789886 0.000000e+00 869.0
7 TraesCS2D01G406600 chr2D 73.900 2000 420 79 1223 3173 599154289 599152343 0.000000e+00 708.0
8 TraesCS2D01G406600 chr2D 80.561 535 90 10 346 869 521589253 521588722 2.530000e-107 399.0
9 TraesCS2D01G406600 chr2D 77.836 573 98 23 3575 4133 396187787 396188344 1.210000e-85 327.0
10 TraesCS2D01G406600 chr2D 92.308 52 1 3 3517 3566 7951774 7951724 2.250000e-08 71.3
11 TraesCS2D01G406600 chr2A 93.186 2671 168 7 738 3402 665949681 665952343 0.000000e+00 3912.0
12 TraesCS2D01G406600 chr2A 90.295 2607 225 19 812 3402 665984652 665987246 0.000000e+00 3387.0
13 TraesCS2D01G406600 chr2A 90.909 66 6 0 278 343 437680855 437680920 6.210000e-14 89.8
14 TraesCS2D01G406600 chr2A 88.060 67 8 0 277 343 492961531 492961597 3.740000e-11 80.5
15 TraesCS2D01G406600 chr2B 93.074 2368 160 3 1065 3430 613232595 613234960 0.000000e+00 3461.0
16 TraesCS2D01G406600 chr2B 90.536 2536 198 27 901 3402 614234165 614236692 0.000000e+00 3315.0
17 TraesCS2D01G406600 chr2B 88.272 2089 202 21 859 2915 613901636 613903713 0.000000e+00 2460.0
18 TraesCS2D01G406600 chr2B 87.606 1420 131 22 2095 3498 613212353 613213743 0.000000e+00 1605.0
19 TraesCS2D01G406600 chr2B 89.087 953 88 11 1135 2084 613205465 613206404 0.000000e+00 1170.0
20 TraesCS2D01G406600 chr2B 92.361 720 47 4 2956 3668 613903710 613904428 0.000000e+00 1018.0
21 TraesCS2D01G406600 chr2B 92.504 627 43 4 3422 4046 613235144 613235768 0.000000e+00 894.0
22 TraesCS2D01G406600 chr2B 90.853 645 52 5 3670 4309 613905550 613906192 0.000000e+00 857.0
23 TraesCS2D01G406600 chr2B 86.237 465 32 8 4046 4507 613256353 613256788 4.080000e-130 475.0
24 TraesCS2D01G406600 chr2B 89.756 205 11 6 831 1027 613232313 613232515 2.080000e-63 254.0
25 TraesCS2D01G406600 chr2B 81.350 311 49 7 346 651 613258477 613258783 1.250000e-60 244.0
26 TraesCS2D01G406600 chr2B 82.308 260 33 10 343 594 613221464 613221718 3.530000e-51 213.0
27 TraesCS2D01G406600 chr2B 86.145 166 21 2 4343 4507 613917282 613917446 1.290000e-40 178.0
28 TraesCS2D01G406600 chr2B 89.394 66 7 0 278 343 415179601 415179666 2.890000e-12 84.2
29 TraesCS2D01G406600 chr3D 80.319 564 81 26 3578 4130 385432132 385432676 2.530000e-107 399.0
30 TraesCS2D01G406600 chr3D 90.741 54 3 2 3517 3568 532957486 532957433 2.250000e-08 71.3
31 TraesCS2D01G406600 chr7A 77.915 566 100 24 3579 4133 139416956 139417507 3.360000e-86 329.0
32 TraesCS2D01G406600 chr3A 79.012 486 85 14 3653 4132 489564616 489565090 2.620000e-82 316.0
33 TraesCS2D01G406600 chr3A 79.592 245 40 8 438 675 55215585 55215344 2.790000e-37 167.0
34 TraesCS2D01G406600 chr5B 76.685 549 106 18 3595 4134 382379571 382379036 7.380000e-73 285.0
35 TraesCS2D01G406600 chr5B 81.720 93 16 1 252 343 248734612 248734704 4.830000e-10 76.8
36 TraesCS2D01G406600 chr5B 88.889 63 4 3 3518 3577 712048873 712048811 1.740000e-09 75.0
37 TraesCS2D01G406600 chr7B 77.483 453 81 16 3693 4133 635175767 635176210 7.480000e-63 252.0
38 TraesCS2D01G406600 chr7B 92.308 52 2 2 3515 3564 609013689 609013740 6.250000e-09 73.1
39 TraesCS2D01G406600 chr1A 91.304 69 4 2 277 344 314851229 314851296 4.800000e-15 93.5
40 TraesCS2D01G406600 chr1A 91.837 49 3 1 476 523 366364822 366364774 2.910000e-07 67.6
41 TraesCS2D01G406600 chr1D 92.188 64 3 2 281 343 206015101 206015039 6.210000e-14 89.8
42 TraesCS2D01G406600 chr1D 87.097 62 5 3 3518 3577 313564457 313564517 2.910000e-07 67.6
43 TraesCS2D01G406600 chr3B 87.838 74 8 1 265 337 113491893 113491820 8.030000e-13 86.1
44 TraesCS2D01G406600 chr3B 86.486 74 9 1 265 337 113492330 113492257 3.740000e-11 80.5
45 TraesCS2D01G406600 chr4B 83.146 89 14 1 256 343 258221339 258221427 3.740000e-11 80.5
46 TraesCS2D01G406600 chr5D 92.308 52 2 2 3515 3564 529762062 529762113 6.250000e-09 73.1
47 TraesCS2D01G406600 chr5D 75.540 139 29 5 2617 2751 473116225 473116088 3.760000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G406600 chr2D 521759967 521764473 4506 True 8323.000000 8323 100.000000 1 4507 1 chr2D.!!$R2 4506
1 TraesCS2D01G406600 chr2D 521578490 521589253 10763 True 2708.333333 4359 86.951667 346 4332 3 chr2D.!!$R6 3986
2 TraesCS2D01G406600 chr2D 521868209 521873299 5090 True 1287.500000 1489 87.100000 1131 3478 2 chr2D.!!$R7 2347
3 TraesCS2D01G406600 chr2D 521783478 521784546 1068 True 1230.000000 1230 87.477000 2437 3509 1 chr2D.!!$R3 1072
4 TraesCS2D01G406600 chr2D 521789886 521790837 951 True 869.000000 869 83.385000 1478 2432 1 chr2D.!!$R4 954
5 TraesCS2D01G406600 chr2D 599152343 599154289 1946 True 708.000000 708 73.900000 1223 3173 1 chr2D.!!$R5 1950
6 TraesCS2D01G406600 chr2D 396187787 396188344 557 False 327.000000 327 77.836000 3575 4133 1 chr2D.!!$F1 558
7 TraesCS2D01G406600 chr2A 665949681 665952343 2662 False 3912.000000 3912 93.186000 738 3402 1 chr2A.!!$F3 2664
8 TraesCS2D01G406600 chr2A 665984652 665987246 2594 False 3387.000000 3387 90.295000 812 3402 1 chr2A.!!$F4 2590
9 TraesCS2D01G406600 chr2B 614234165 614236692 2527 False 3315.000000 3315 90.536000 901 3402 1 chr2B.!!$F6 2501
10 TraesCS2D01G406600 chr2B 613212353 613213743 1390 False 1605.000000 1605 87.606000 2095 3498 1 chr2B.!!$F3 1403
11 TraesCS2D01G406600 chr2B 613232313 613235768 3455 False 1536.333333 3461 91.778000 831 4046 3 chr2B.!!$F7 3215
12 TraesCS2D01G406600 chr2B 613901636 613906192 4556 False 1445.000000 2460 90.495333 859 4309 3 chr2B.!!$F9 3450
13 TraesCS2D01G406600 chr2B 613205465 613206404 939 False 1170.000000 1170 89.087000 1135 2084 1 chr2B.!!$F2 949
14 TraesCS2D01G406600 chr2B 613256353 613258783 2430 False 359.500000 475 83.793500 346 4507 2 chr2B.!!$F8 4161
15 TraesCS2D01G406600 chr3D 385432132 385432676 544 False 399.000000 399 80.319000 3578 4130 1 chr3D.!!$F1 552
16 TraesCS2D01G406600 chr7A 139416956 139417507 551 False 329.000000 329 77.915000 3579 4133 1 chr7A.!!$F1 554
17 TraesCS2D01G406600 chr5B 382379036 382379571 535 True 285.000000 285 76.685000 3595 4134 1 chr5B.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.035152 TGCTGTGGCGGAGAATTGAT 60.035 50.0 0.00 0.0 42.25 2.57 F
731 737 0.106708 ACAAGAGAAGCGACAAGGCA 59.893 50.0 0.00 0.0 34.64 4.75 F
2441 10273 0.179001 AGTTAGCCCAGGCAAACGTT 60.179 50.0 12.03 0.0 44.88 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 9527 0.770499 TCCAGTGCCCAAACTCATCA 59.230 50.0 0.0 0.0 0.0 3.07 R
2518 10350 0.916086 ACCCCTGAAACCGATATGCA 59.084 50.0 0.0 0.0 0.0 3.96 R
4414 16375 0.941963 TAGCCCCTACTCCCTGACAT 59.058 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.265791 GTTGGAGATGCTCTAACACTGG 58.734 50.000 15.79 0.00 46.43 4.00
23 24 2.540383 TGGAGATGCTCTAACACTGGT 58.460 47.619 0.00 0.00 0.00 4.00
24 25 2.906389 TGGAGATGCTCTAACACTGGTT 59.094 45.455 0.00 0.00 41.06 3.67
25 26 4.093743 TGGAGATGCTCTAACACTGGTTA 58.906 43.478 0.00 0.00 38.45 2.85
26 27 4.716784 TGGAGATGCTCTAACACTGGTTAT 59.283 41.667 0.00 0.00 38.72 1.89
27 28 5.053145 GGAGATGCTCTAACACTGGTTATG 58.947 45.833 0.00 0.00 38.72 1.90
28 29 5.028549 AGATGCTCTAACACTGGTTATGG 57.971 43.478 0.00 0.00 38.72 2.74
29 30 4.716784 AGATGCTCTAACACTGGTTATGGA 59.283 41.667 0.00 0.00 38.72 3.41
30 31 4.901197 TGCTCTAACACTGGTTATGGAA 57.099 40.909 0.00 0.00 38.72 3.53
31 32 4.832248 TGCTCTAACACTGGTTATGGAAG 58.168 43.478 0.00 0.00 38.72 3.46
32 33 4.530553 TGCTCTAACACTGGTTATGGAAGA 59.469 41.667 0.00 0.00 38.72 2.87
33 34 5.112686 GCTCTAACACTGGTTATGGAAGAG 58.887 45.833 0.00 0.00 38.72 2.85
34 35 5.105310 GCTCTAACACTGGTTATGGAAGAGA 60.105 44.000 7.95 0.00 37.09 3.10
35 36 6.282199 TCTAACACTGGTTATGGAAGAGAC 57.718 41.667 0.00 0.00 38.72 3.36
36 37 3.594603 ACACTGGTTATGGAAGAGACG 57.405 47.619 0.00 0.00 0.00 4.18
37 38 3.162666 ACACTGGTTATGGAAGAGACGA 58.837 45.455 0.00 0.00 0.00 4.20
38 39 3.576982 ACACTGGTTATGGAAGAGACGAA 59.423 43.478 0.00 0.00 0.00 3.85
39 40 4.223032 ACACTGGTTATGGAAGAGACGAAT 59.777 41.667 0.00 0.00 0.00 3.34
40 41 5.178797 CACTGGTTATGGAAGAGACGAATT 58.821 41.667 0.00 0.00 0.00 2.17
41 42 5.063944 CACTGGTTATGGAAGAGACGAATTG 59.936 44.000 0.00 0.00 0.00 2.32
42 43 4.513442 TGGTTATGGAAGAGACGAATTGG 58.487 43.478 0.00 0.00 0.00 3.16
43 44 4.224147 TGGTTATGGAAGAGACGAATTGGA 59.776 41.667 0.00 0.00 0.00 3.53
44 45 4.571176 GGTTATGGAAGAGACGAATTGGAC 59.429 45.833 0.00 0.00 0.00 4.02
45 46 2.363788 TGGAAGAGACGAATTGGACG 57.636 50.000 0.00 0.00 0.00 4.79
46 47 1.616865 TGGAAGAGACGAATTGGACGT 59.383 47.619 0.00 0.00 46.58 4.34
47 48 2.036733 TGGAAGAGACGAATTGGACGTT 59.963 45.455 0.00 0.00 43.97 3.99
48 49 3.064931 GGAAGAGACGAATTGGACGTTT 58.935 45.455 0.00 0.00 43.97 3.60
49 50 3.497262 GGAAGAGACGAATTGGACGTTTT 59.503 43.478 0.00 0.00 43.97 2.43
50 51 4.024302 GGAAGAGACGAATTGGACGTTTTT 60.024 41.667 0.00 0.00 43.97 1.94
51 52 4.727235 AGAGACGAATTGGACGTTTTTC 57.273 40.909 0.00 0.00 43.97 2.29
52 53 4.377897 AGAGACGAATTGGACGTTTTTCT 58.622 39.130 0.00 0.00 43.97 2.52
53 54 4.814771 AGAGACGAATTGGACGTTTTTCTT 59.185 37.500 0.00 0.00 43.97 2.52
54 55 4.844267 AGACGAATTGGACGTTTTTCTTG 58.156 39.130 0.00 0.00 43.97 3.02
55 56 3.959943 ACGAATTGGACGTTTTTCTTGG 58.040 40.909 0.00 0.00 41.18 3.61
56 57 3.628487 ACGAATTGGACGTTTTTCTTGGA 59.372 39.130 0.00 0.00 41.18 3.53
57 58 4.219033 CGAATTGGACGTTTTTCTTGGAG 58.781 43.478 0.00 0.00 0.00 3.86
58 59 4.024387 CGAATTGGACGTTTTTCTTGGAGA 60.024 41.667 0.00 0.00 0.00 3.71
59 60 5.504994 CGAATTGGACGTTTTTCTTGGAGAA 60.505 40.000 0.00 0.00 31.28 2.87
60 61 5.845391 ATTGGACGTTTTTCTTGGAGAAA 57.155 34.783 0.00 0.00 42.00 2.52
61 62 4.625972 TGGACGTTTTTCTTGGAGAAAC 57.374 40.909 2.79 1.75 43.25 2.78
62 63 4.011023 TGGACGTTTTTCTTGGAGAAACA 58.989 39.130 12.01 0.00 43.25 2.83
63 64 4.095782 TGGACGTTTTTCTTGGAGAAACAG 59.904 41.667 12.01 8.27 43.25 3.16
64 65 4.334481 GGACGTTTTTCTTGGAGAAACAGA 59.666 41.667 12.01 0.00 43.25 3.41
65 66 5.231265 ACGTTTTTCTTGGAGAAACAGAC 57.769 39.130 12.01 2.87 43.25 3.51
66 67 4.201783 ACGTTTTTCTTGGAGAAACAGACG 60.202 41.667 19.90 19.90 43.25 4.18
67 68 4.033587 CGTTTTTCTTGGAGAAACAGACGA 59.966 41.667 18.31 0.00 43.25 4.20
68 69 5.446741 CGTTTTTCTTGGAGAAACAGACGAA 60.447 40.000 18.31 4.25 43.25 3.85
69 70 5.479716 TTTTCTTGGAGAAACAGACGAAC 57.520 39.130 2.79 0.00 43.25 3.95
70 71 4.402056 TTCTTGGAGAAACAGACGAACT 57.598 40.909 0.00 0.00 29.99 3.01
71 72 4.570772 TTTCTTGGAGAAACAGACGAACTG 59.429 41.667 11.38 11.38 39.13 3.16
72 73 6.425135 TTTCTTGGAGAAACAGACGAACTGG 61.425 44.000 15.70 2.48 39.13 4.00
73 74 8.527241 TTTCTTGGAGAAACAGACGAACTGGA 62.527 42.308 15.70 1.70 39.13 3.86
79 80 2.506544 CAGACGAACTGGACGTGTG 58.493 57.895 0.00 10.23 45.17 3.82
80 81 1.299926 AGACGAACTGGACGTGTGC 60.300 57.895 0.00 0.00 43.97 4.57
81 82 1.299926 GACGAACTGGACGTGTGCT 60.300 57.895 0.00 0.00 43.97 4.40
82 83 1.548973 GACGAACTGGACGTGTGCTG 61.549 60.000 0.00 0.00 43.97 4.41
83 84 2.310233 CGAACTGGACGTGTGCTGG 61.310 63.158 0.00 0.00 0.00 4.85
84 85 2.591715 AACTGGACGTGTGCTGGC 60.592 61.111 0.00 0.00 0.00 4.85
85 86 3.399105 AACTGGACGTGTGCTGGCA 62.399 57.895 0.00 0.00 0.00 4.92
86 87 3.046087 CTGGACGTGTGCTGGCAG 61.046 66.667 10.94 10.94 0.00 4.85
87 88 4.624364 TGGACGTGTGCTGGCAGG 62.624 66.667 17.64 0.96 0.00 4.85
89 90 4.314440 GACGTGTGCTGGCAGGGA 62.314 66.667 17.64 0.00 0.00 4.20
90 91 4.320456 ACGTGTGCTGGCAGGGAG 62.320 66.667 17.64 0.00 0.00 4.30
91 92 4.007644 CGTGTGCTGGCAGGGAGA 62.008 66.667 17.64 0.00 0.00 3.71
92 93 2.359230 GTGTGCTGGCAGGGAGAC 60.359 66.667 17.64 3.43 0.00 3.36
93 94 2.527624 TGTGCTGGCAGGGAGACT 60.528 61.111 17.64 0.00 0.00 3.24
94 95 1.229177 TGTGCTGGCAGGGAGACTA 60.229 57.895 17.64 0.00 0.00 2.59
95 96 0.618680 TGTGCTGGCAGGGAGACTAT 60.619 55.000 17.64 0.00 0.00 2.12
96 97 0.543749 GTGCTGGCAGGGAGACTATT 59.456 55.000 17.64 0.00 0.00 1.73
97 98 0.543277 TGCTGGCAGGGAGACTATTG 59.457 55.000 17.64 0.00 0.00 1.90
98 99 0.179034 GCTGGCAGGGAGACTATTGG 60.179 60.000 17.64 0.00 0.00 3.16
99 100 0.471617 CTGGCAGGGAGACTATTGGG 59.528 60.000 6.61 0.00 0.00 4.12
100 101 1.149401 GGCAGGGAGACTATTGGGC 59.851 63.158 0.00 0.00 0.00 5.36
101 102 1.348775 GGCAGGGAGACTATTGGGCT 61.349 60.000 0.00 0.00 34.86 5.19
102 103 0.548510 GCAGGGAGACTATTGGGCTT 59.451 55.000 0.00 0.00 30.21 4.35
103 104 1.475930 GCAGGGAGACTATTGGGCTTC 60.476 57.143 0.00 0.00 30.21 3.86
105 106 1.512735 GGGAGACTATTGGGCTTCCT 58.487 55.000 0.00 0.00 45.70 3.36
106 107 1.847088 GGGAGACTATTGGGCTTCCTT 59.153 52.381 0.00 0.00 45.70 3.36
107 108 2.242452 GGGAGACTATTGGGCTTCCTTT 59.758 50.000 0.00 0.00 45.70 3.11
108 109 3.309193 GGGAGACTATTGGGCTTCCTTTT 60.309 47.826 0.00 0.00 45.70 2.27
109 110 3.696548 GGAGACTATTGGGCTTCCTTTTG 59.303 47.826 0.00 0.00 30.21 2.44
110 111 4.336280 GAGACTATTGGGCTTCCTTTTGT 58.664 43.478 0.00 0.00 30.21 2.83
111 112 4.740902 AGACTATTGGGCTTCCTTTTGTT 58.259 39.130 0.00 0.00 0.00 2.83
112 113 5.147767 AGACTATTGGGCTTCCTTTTGTTT 58.852 37.500 0.00 0.00 0.00 2.83
113 114 5.602561 AGACTATTGGGCTTCCTTTTGTTTT 59.397 36.000 0.00 0.00 0.00 2.43
114 115 6.780522 AGACTATTGGGCTTCCTTTTGTTTTA 59.219 34.615 0.00 0.00 0.00 1.52
115 116 6.993079 ACTATTGGGCTTCCTTTTGTTTTAG 58.007 36.000 0.00 0.00 0.00 1.85
116 117 4.681074 TTGGGCTTCCTTTTGTTTTAGG 57.319 40.909 0.00 0.00 0.00 2.69
117 118 3.917300 TGGGCTTCCTTTTGTTTTAGGA 58.083 40.909 0.00 0.00 38.76 2.94
118 119 4.488770 TGGGCTTCCTTTTGTTTTAGGAT 58.511 39.130 0.00 0.00 40.15 3.24
119 120 5.646215 TGGGCTTCCTTTTGTTTTAGGATA 58.354 37.500 0.00 0.00 40.15 2.59
120 121 6.078664 TGGGCTTCCTTTTGTTTTAGGATAA 58.921 36.000 0.00 0.00 40.15 1.75
121 122 6.014925 TGGGCTTCCTTTTGTTTTAGGATAAC 60.015 38.462 0.00 0.00 40.15 1.89
122 123 6.210784 GGGCTTCCTTTTGTTTTAGGATAACT 59.789 38.462 0.00 0.00 40.15 2.24
123 124 7.090808 GGCTTCCTTTTGTTTTAGGATAACTG 58.909 38.462 0.00 0.00 40.15 3.16
124 125 7.255836 GGCTTCCTTTTGTTTTAGGATAACTGT 60.256 37.037 0.00 0.00 40.15 3.55
125 126 7.595130 GCTTCCTTTTGTTTTAGGATAACTGTG 59.405 37.037 0.00 0.00 40.15 3.66
126 127 7.519032 TCCTTTTGTTTTAGGATAACTGTGG 57.481 36.000 0.00 0.00 35.66 4.17
127 128 7.291566 TCCTTTTGTTTTAGGATAACTGTGGA 58.708 34.615 0.00 0.00 35.66 4.02
128 129 7.447238 TCCTTTTGTTTTAGGATAACTGTGGAG 59.553 37.037 0.00 0.00 35.66 3.86
129 130 7.230712 CCTTTTGTTTTAGGATAACTGTGGAGT 59.769 37.037 0.00 0.00 33.13 3.85
130 131 7.504924 TTTGTTTTAGGATAACTGTGGAGTG 57.495 36.000 0.00 0.00 30.61 3.51
131 132 6.428083 TGTTTTAGGATAACTGTGGAGTGA 57.572 37.500 0.00 0.00 30.61 3.41
132 133 6.464222 TGTTTTAGGATAACTGTGGAGTGAG 58.536 40.000 0.00 0.00 30.61 3.51
133 134 6.269077 TGTTTTAGGATAACTGTGGAGTGAGA 59.731 38.462 0.00 0.00 30.61 3.27
134 135 5.916661 TTAGGATAACTGTGGAGTGAGAC 57.083 43.478 0.00 0.00 30.61 3.36
135 136 2.755655 AGGATAACTGTGGAGTGAGACG 59.244 50.000 0.00 0.00 30.61 4.18
136 137 2.753452 GGATAACTGTGGAGTGAGACGA 59.247 50.000 0.00 0.00 30.61 4.20
137 138 3.381908 GGATAACTGTGGAGTGAGACGAT 59.618 47.826 0.00 0.00 30.61 3.73
138 139 4.142138 GGATAACTGTGGAGTGAGACGATT 60.142 45.833 0.00 0.00 30.61 3.34
139 140 2.732412 ACTGTGGAGTGAGACGATTG 57.268 50.000 0.00 0.00 0.00 2.67
140 141 1.273606 ACTGTGGAGTGAGACGATTGG 59.726 52.381 0.00 0.00 0.00 3.16
141 142 0.608130 TGTGGAGTGAGACGATTGGG 59.392 55.000 0.00 0.00 0.00 4.12
142 143 0.741221 GTGGAGTGAGACGATTGGGC 60.741 60.000 0.00 0.00 0.00 5.36
143 144 0.904865 TGGAGTGAGACGATTGGGCT 60.905 55.000 0.00 0.00 0.00 5.19
144 145 0.250513 GGAGTGAGACGATTGGGCTT 59.749 55.000 0.00 0.00 0.00 4.35
145 146 1.646189 GAGTGAGACGATTGGGCTTC 58.354 55.000 0.00 0.00 0.00 3.86
146 147 0.108615 AGTGAGACGATTGGGCTTCG 60.109 55.000 0.00 4.06 42.20 3.79
147 148 1.084370 GTGAGACGATTGGGCTTCGG 61.084 60.000 9.17 0.00 40.83 4.30
148 149 1.218316 GAGACGATTGGGCTTCGGT 59.782 57.895 9.17 0.00 40.83 4.69
149 150 1.079127 AGACGATTGGGCTTCGGTG 60.079 57.895 9.17 0.00 40.83 4.94
150 151 2.746277 ACGATTGGGCTTCGGTGC 60.746 61.111 9.17 0.00 40.83 5.01
151 152 2.745884 CGATTGGGCTTCGGTGCA 60.746 61.111 3.30 0.00 33.05 4.57
152 153 2.877691 GATTGGGCTTCGGTGCAC 59.122 61.111 8.80 8.80 36.79 4.57
153 154 1.971167 GATTGGGCTTCGGTGCACA 60.971 57.895 20.43 1.54 45.51 4.57
155 156 3.872603 TGGGCTTCGGTGCACAGT 61.873 61.111 20.43 0.00 41.96 3.55
156 157 2.345991 GGGCTTCGGTGCACAGTA 59.654 61.111 20.43 7.73 36.18 2.74
157 158 1.078426 GGGCTTCGGTGCACAGTAT 60.078 57.895 20.43 0.00 36.18 2.12
158 159 0.177141 GGGCTTCGGTGCACAGTATA 59.823 55.000 20.43 4.28 36.18 1.47
159 160 1.406341 GGGCTTCGGTGCACAGTATAA 60.406 52.381 20.43 4.30 36.18 0.98
160 161 2.561569 GGCTTCGGTGCACAGTATAAT 58.438 47.619 20.43 0.00 34.04 1.28
161 162 3.493699 GGGCTTCGGTGCACAGTATAATA 60.494 47.826 20.43 0.00 36.18 0.98
162 163 4.124238 GGCTTCGGTGCACAGTATAATAA 58.876 43.478 20.43 2.79 34.04 1.40
163 164 4.755123 GGCTTCGGTGCACAGTATAATAAT 59.245 41.667 20.43 0.00 34.04 1.28
164 165 5.334105 GGCTTCGGTGCACAGTATAATAATG 60.334 44.000 20.43 0.51 34.04 1.90
165 166 5.236478 GCTTCGGTGCACAGTATAATAATGT 59.764 40.000 20.43 0.00 37.49 2.71
166 167 6.422701 GCTTCGGTGCACAGTATAATAATGTA 59.577 38.462 20.43 0.00 34.93 2.29
167 168 7.042321 GCTTCGGTGCACAGTATAATAATGTAA 60.042 37.037 20.43 0.00 34.93 2.41
168 169 8.896320 TTCGGTGCACAGTATAATAATGTAAT 57.104 30.769 20.43 0.00 34.93 1.89
169 170 8.528917 TCGGTGCACAGTATAATAATGTAATC 57.471 34.615 20.43 0.00 34.93 1.75
170 171 7.601130 TCGGTGCACAGTATAATAATGTAATCC 59.399 37.037 20.43 0.00 34.93 3.01
171 172 7.411480 CGGTGCACAGTATAATAATGTAATCCG 60.411 40.741 20.43 1.62 34.93 4.18
172 173 7.386848 GGTGCACAGTATAATAATGTAATCCGT 59.613 37.037 20.43 0.00 34.93 4.69
173 174 8.770828 GTGCACAGTATAATAATGTAATCCGTT 58.229 33.333 13.17 0.00 34.93 4.44
174 175 9.332502 TGCACAGTATAATAATGTAATCCGTTT 57.667 29.630 0.00 0.00 34.93 3.60
175 176 9.807386 GCACAGTATAATAATGTAATCCGTTTC 57.193 33.333 0.00 0.00 34.93 2.78
184 185 9.651913 AATAATGTAATCCGTTTCTTTTGCATT 57.348 25.926 0.00 0.00 37.83 3.56
185 186 7.961325 AATGTAATCCGTTTCTTTTGCATTT 57.039 28.000 0.00 0.00 32.75 2.32
186 187 7.961325 ATGTAATCCGTTTCTTTTGCATTTT 57.039 28.000 0.00 0.00 0.00 1.82
187 188 7.778470 TGTAATCCGTTTCTTTTGCATTTTT 57.222 28.000 0.00 0.00 0.00 1.94
207 208 3.906720 TTTATGGAGGATATAGCGGGC 57.093 47.619 0.00 0.00 0.00 6.13
208 209 1.789523 TATGGAGGATATAGCGGGCC 58.210 55.000 0.00 0.00 0.00 5.80
209 210 0.252696 ATGGAGGATATAGCGGGCCA 60.253 55.000 4.39 0.00 0.00 5.36
210 211 0.472925 TGGAGGATATAGCGGGCCAA 60.473 55.000 4.39 0.00 0.00 4.52
211 212 0.690762 GGAGGATATAGCGGGCCAAA 59.309 55.000 4.39 0.00 0.00 3.28
212 213 1.339151 GGAGGATATAGCGGGCCAAAG 60.339 57.143 4.39 0.00 0.00 2.77
213 214 1.623811 GAGGATATAGCGGGCCAAAGA 59.376 52.381 4.39 0.00 0.00 2.52
214 215 2.038557 GAGGATATAGCGGGCCAAAGAA 59.961 50.000 4.39 0.00 0.00 2.52
215 216 2.644798 AGGATATAGCGGGCCAAAGAAT 59.355 45.455 4.39 0.00 0.00 2.40
216 217 2.749621 GGATATAGCGGGCCAAAGAATG 59.250 50.000 4.39 0.00 0.00 2.67
217 218 1.604604 TATAGCGGGCCAAAGAATGC 58.395 50.000 4.39 0.00 0.00 3.56
218 219 0.395586 ATAGCGGGCCAAAGAATGCA 60.396 50.000 4.39 0.00 0.00 3.96
219 220 0.395586 TAGCGGGCCAAAGAATGCAT 60.396 50.000 4.39 0.00 0.00 3.96
220 221 1.519898 GCGGGCCAAAGAATGCATG 60.520 57.895 4.39 0.00 0.00 4.06
221 222 1.892338 CGGGCCAAAGAATGCATGT 59.108 52.632 4.39 0.00 0.00 3.21
222 223 0.179129 CGGGCCAAAGAATGCATGTC 60.179 55.000 4.39 0.01 0.00 3.06
223 224 1.188863 GGGCCAAAGAATGCATGTCT 58.811 50.000 4.39 2.63 0.00 3.41
224 225 1.135721 GGGCCAAAGAATGCATGTCTC 59.864 52.381 4.39 0.00 0.00 3.36
225 226 1.820519 GGCCAAAGAATGCATGTCTCA 59.179 47.619 0.00 0.00 0.00 3.27
226 227 2.416431 GGCCAAAGAATGCATGTCTCAC 60.416 50.000 0.00 0.00 0.00 3.51
227 228 2.730090 GCCAAAGAATGCATGTCTCACG 60.730 50.000 0.00 0.00 0.00 4.35
228 229 2.159476 CCAAAGAATGCATGTCTCACGG 60.159 50.000 0.00 3.92 0.00 4.94
229 230 2.479566 AAGAATGCATGTCTCACGGT 57.520 45.000 0.00 0.00 0.00 4.83
230 231 2.479566 AGAATGCATGTCTCACGGTT 57.520 45.000 0.00 0.00 0.00 4.44
231 232 2.079158 AGAATGCATGTCTCACGGTTG 58.921 47.619 0.00 0.00 0.00 3.77
232 233 0.523072 AATGCATGTCTCACGGTTGC 59.477 50.000 0.00 0.00 0.00 4.17
233 234 0.606130 ATGCATGTCTCACGGTTGCA 60.606 50.000 0.00 5.50 46.22 4.08
234 235 0.606130 TGCATGTCTCACGGTTGCAT 60.606 50.000 0.00 0.00 38.32 3.96
235 236 0.179181 GCATGTCTCACGGTTGCATG 60.179 55.000 0.00 0.00 39.68 4.06
236 237 1.159285 CATGTCTCACGGTTGCATGT 58.841 50.000 0.00 0.00 34.10 3.21
237 238 1.135888 CATGTCTCACGGTTGCATGTG 60.136 52.381 7.68 7.68 37.44 3.21
238 239 0.884259 TGTCTCACGGTTGCATGTGG 60.884 55.000 12.54 5.75 36.74 4.17
239 240 0.602638 GTCTCACGGTTGCATGTGGA 60.603 55.000 12.54 7.49 36.74 4.02
240 241 0.602638 TCTCACGGTTGCATGTGGAC 60.603 55.000 12.54 0.00 36.74 4.02
241 242 0.884259 CTCACGGTTGCATGTGGACA 60.884 55.000 12.54 0.00 36.74 4.02
242 243 1.163420 TCACGGTTGCATGTGGACAC 61.163 55.000 12.54 0.00 36.74 3.67
243 244 1.153066 ACGGTTGCATGTGGACACA 60.153 52.632 7.68 7.68 46.44 3.72
258 259 2.749682 ACATTGCTGTGGCGGAGA 59.250 55.556 0.00 0.00 42.25 3.71
259 260 1.073025 ACATTGCTGTGGCGGAGAA 59.927 52.632 0.00 0.00 42.25 2.87
260 261 0.322816 ACATTGCTGTGGCGGAGAAT 60.323 50.000 0.00 0.00 42.25 2.40
261 262 0.813184 CATTGCTGTGGCGGAGAATT 59.187 50.000 0.00 0.00 42.25 2.17
262 263 0.813184 ATTGCTGTGGCGGAGAATTG 59.187 50.000 0.00 0.00 42.25 2.32
263 264 0.250684 TTGCTGTGGCGGAGAATTGA 60.251 50.000 0.00 0.00 42.25 2.57
264 265 0.035152 TGCTGTGGCGGAGAATTGAT 60.035 50.000 0.00 0.00 42.25 2.57
265 266 0.379669 GCTGTGGCGGAGAATTGATG 59.620 55.000 0.00 0.00 0.00 3.07
266 267 2.013563 GCTGTGGCGGAGAATTGATGA 61.014 52.381 0.00 0.00 0.00 2.92
267 268 1.667724 CTGTGGCGGAGAATTGATGAC 59.332 52.381 0.00 0.00 0.00 3.06
268 269 0.652592 GTGGCGGAGAATTGATGACG 59.347 55.000 0.00 0.00 0.00 4.35
269 270 0.249120 TGGCGGAGAATTGATGACGT 59.751 50.000 0.00 0.00 0.00 4.34
270 271 0.652592 GGCGGAGAATTGATGACGTG 59.347 55.000 0.00 0.00 0.00 4.49
271 272 0.652592 GCGGAGAATTGATGACGTGG 59.347 55.000 0.00 0.00 0.00 4.94
272 273 0.652592 CGGAGAATTGATGACGTGGC 59.347 55.000 0.00 0.00 0.00 5.01
273 274 1.017387 GGAGAATTGATGACGTGGCC 58.983 55.000 0.00 0.00 0.00 5.36
274 275 1.678728 GGAGAATTGATGACGTGGCCA 60.679 52.381 0.00 0.00 0.00 5.36
275 276 2.083774 GAGAATTGATGACGTGGCCAA 58.916 47.619 7.24 0.00 0.00 4.52
276 277 2.487762 GAGAATTGATGACGTGGCCAAA 59.512 45.455 7.24 0.00 0.00 3.28
277 278 3.091545 AGAATTGATGACGTGGCCAAAT 58.908 40.909 7.24 0.00 0.00 2.32
278 279 2.945447 ATTGATGACGTGGCCAAATG 57.055 45.000 7.24 2.50 0.00 2.32
279 280 0.243365 TTGATGACGTGGCCAAATGC 59.757 50.000 7.24 0.00 40.16 3.56
280 281 0.608856 TGATGACGTGGCCAAATGCT 60.609 50.000 7.24 0.00 40.92 3.79
281 282 0.179156 GATGACGTGGCCAAATGCTG 60.179 55.000 7.24 0.00 40.92 4.41
282 283 0.608856 ATGACGTGGCCAAATGCTGA 60.609 50.000 7.24 0.00 40.92 4.26
283 284 0.608856 TGACGTGGCCAAATGCTGAT 60.609 50.000 7.24 0.00 40.92 2.90
284 285 0.179156 GACGTGGCCAAATGCTGATG 60.179 55.000 7.24 0.00 40.92 3.07
285 286 0.895100 ACGTGGCCAAATGCTGATGT 60.895 50.000 7.24 0.00 40.92 3.06
286 287 0.457166 CGTGGCCAAATGCTGATGTG 60.457 55.000 7.24 0.00 40.92 3.21
287 288 0.108520 GTGGCCAAATGCTGATGTGG 60.109 55.000 7.24 0.00 39.79 4.17
288 289 0.251698 TGGCCAAATGCTGATGTGGA 60.252 50.000 0.61 0.00 39.18 4.02
289 290 1.117150 GGCCAAATGCTGATGTGGAT 58.883 50.000 0.00 0.00 39.18 3.41
290 291 2.309613 GGCCAAATGCTGATGTGGATA 58.690 47.619 0.00 0.00 39.18 2.59
291 292 2.295349 GGCCAAATGCTGATGTGGATAG 59.705 50.000 0.00 0.00 39.18 2.08
292 293 2.288030 GCCAAATGCTGATGTGGATAGC 60.288 50.000 0.00 0.00 39.18 2.97
293 294 3.220110 CCAAATGCTGATGTGGATAGCT 58.780 45.455 0.00 0.00 39.18 3.32
294 295 3.635373 CCAAATGCTGATGTGGATAGCTT 59.365 43.478 0.00 0.00 39.18 3.74
295 296 4.499188 CCAAATGCTGATGTGGATAGCTTG 60.499 45.833 0.00 0.00 39.18 4.01
296 297 1.671979 TGCTGATGTGGATAGCTTGC 58.328 50.000 0.00 0.00 38.25 4.01
297 298 1.065272 TGCTGATGTGGATAGCTTGCA 60.065 47.619 0.00 0.00 38.25 4.08
298 299 2.228059 GCTGATGTGGATAGCTTGCAT 58.772 47.619 0.00 0.00 34.70 3.96
299 300 2.031069 GCTGATGTGGATAGCTTGCATG 60.031 50.000 0.00 0.00 34.70 4.06
300 301 3.211865 CTGATGTGGATAGCTTGCATGT 58.788 45.455 0.00 0.00 0.00 3.21
301 302 3.623703 TGATGTGGATAGCTTGCATGTT 58.376 40.909 0.00 0.00 0.00 2.71
302 303 4.018490 TGATGTGGATAGCTTGCATGTTT 58.982 39.130 0.00 0.00 0.00 2.83
303 304 5.192176 TGATGTGGATAGCTTGCATGTTTA 58.808 37.500 0.00 0.00 0.00 2.01
304 305 5.297527 TGATGTGGATAGCTTGCATGTTTAG 59.702 40.000 0.00 0.00 0.00 1.85
305 306 4.842574 TGTGGATAGCTTGCATGTTTAGA 58.157 39.130 0.00 0.00 0.00 2.10
306 307 5.439721 TGTGGATAGCTTGCATGTTTAGAT 58.560 37.500 0.00 0.00 0.00 1.98
307 308 6.591001 TGTGGATAGCTTGCATGTTTAGATA 58.409 36.000 0.00 0.00 0.00 1.98
308 309 7.053498 TGTGGATAGCTTGCATGTTTAGATAA 58.947 34.615 0.00 0.00 0.00 1.75
309 310 7.555914 TGTGGATAGCTTGCATGTTTAGATAAA 59.444 33.333 0.00 0.00 0.00 1.40
310 311 8.571336 GTGGATAGCTTGCATGTTTAGATAAAT 58.429 33.333 0.00 0.00 0.00 1.40
311 312 9.791801 TGGATAGCTTGCATGTTTAGATAAATA 57.208 29.630 0.00 0.00 0.00 1.40
315 316 8.525290 AGCTTGCATGTTTAGATAAATAAGGT 57.475 30.769 1.14 0.00 0.00 3.50
316 317 9.627123 AGCTTGCATGTTTAGATAAATAAGGTA 57.373 29.630 1.14 0.00 0.00 3.08
317 318 9.884465 GCTTGCATGTTTAGATAAATAAGGTAG 57.116 33.333 1.14 0.00 0.00 3.18
336 337 7.176589 AGGTAGTGAGAATGAACTTCTTAGG 57.823 40.000 0.00 0.00 44.42 2.69
337 338 6.726764 AGGTAGTGAGAATGAACTTCTTAGGT 59.273 38.462 0.00 0.00 44.42 3.08
338 339 7.894364 AGGTAGTGAGAATGAACTTCTTAGGTA 59.106 37.037 0.00 0.00 44.42 3.08
339 340 8.697292 GGTAGTGAGAATGAACTTCTTAGGTAT 58.303 37.037 0.00 0.00 44.42 2.73
372 373 2.175069 AGTATTAGGGAGCTGGACGAGA 59.825 50.000 0.00 0.00 0.00 4.04
374 375 1.183549 TTAGGGAGCTGGACGAGAAC 58.816 55.000 0.00 0.00 0.00 3.01
406 407 2.978010 CGTGAACAAAGGCCGGCT 60.978 61.111 28.56 9.77 0.00 5.52
415 416 0.831711 AAAGGCCGGCTCAATTGGTT 60.832 50.000 28.56 6.04 0.00 3.67
420 421 2.606108 GCCGGCTCAATTGGTTAAAAG 58.394 47.619 22.15 0.00 0.00 2.27
439 440 9.101655 GTTAAAAGGTAAAAGAAAAAGAACCCC 57.898 33.333 0.00 0.00 0.00 4.95
447 448 5.700722 AAGAAAAAGAACCCCGATAACAC 57.299 39.130 0.00 0.00 0.00 3.32
459 460 3.128589 CCCGATAACACCTGAATGTTTGG 59.871 47.826 0.00 0.00 39.86 3.28
467 468 4.840115 ACACCTGAATGTTTGGGATTTGAT 59.160 37.500 0.00 0.00 0.00 2.57
468 469 5.172934 CACCTGAATGTTTGGGATTTGATG 58.827 41.667 0.00 0.00 0.00 3.07
469 470 4.840115 ACCTGAATGTTTGGGATTTGATGT 59.160 37.500 0.00 0.00 0.00 3.06
473 474 3.399440 TGTTTGGGATTTGATGTTGGC 57.601 42.857 0.00 0.00 0.00 4.52
475 476 3.066380 GTTTGGGATTTGATGTTGGCAC 58.934 45.455 0.00 0.00 0.00 5.01
503 507 6.617289 GTTTTCGATGGCAATTTTAGTGAG 57.383 37.500 0.00 0.00 0.00 3.51
504 508 6.378582 GTTTTCGATGGCAATTTTAGTGAGA 58.621 36.000 0.00 0.00 0.00 3.27
505 509 5.801350 TTCGATGGCAATTTTAGTGAGAG 57.199 39.130 0.00 0.00 0.00 3.20
516 521 7.413877 GCAATTTTAGTGAGAGAGGATGACAAG 60.414 40.741 0.00 0.00 0.00 3.16
521 526 6.279513 AGTGAGAGAGGATGACAAGTTTAG 57.720 41.667 0.00 0.00 0.00 1.85
524 529 7.451877 AGTGAGAGAGGATGACAAGTTTAGTTA 59.548 37.037 0.00 0.00 0.00 2.24
525 530 7.757624 GTGAGAGAGGATGACAAGTTTAGTTAG 59.242 40.741 0.00 0.00 0.00 2.34
526 531 6.635755 AGAGAGGATGACAAGTTTAGTTAGC 58.364 40.000 0.00 0.00 0.00 3.09
530 535 6.534634 AGGATGACAAGTTTAGTTAGCAAGT 58.465 36.000 0.00 0.00 0.00 3.16
534 539 7.667043 TGACAAGTTTAGTTAGCAAGTATGG 57.333 36.000 0.00 0.00 0.00 2.74
535 540 7.221450 TGACAAGTTTAGTTAGCAAGTATGGT 58.779 34.615 0.00 0.00 41.03 3.55
537 542 9.211485 GACAAGTTTAGTTAGCAAGTATGGTAA 57.789 33.333 0.00 0.00 44.80 2.85
546 551 5.545658 AGCAAGTATGGTAAATTCGTGTG 57.454 39.130 0.00 0.00 34.98 3.82
548 553 5.121768 AGCAAGTATGGTAAATTCGTGTGTC 59.878 40.000 0.00 0.00 34.98 3.67
549 554 5.547341 CAAGTATGGTAAATTCGTGTGTCG 58.453 41.667 0.00 0.00 41.41 4.35
550 555 4.813027 AGTATGGTAAATTCGTGTGTCGT 58.187 39.130 0.00 0.00 40.80 4.34
553 558 3.974912 TGGTAAATTCGTGTGTCGTGTA 58.025 40.909 0.00 0.00 40.80 2.90
555 560 4.989797 TGGTAAATTCGTGTGTCGTGTATT 59.010 37.500 0.00 0.00 40.80 1.89
587 592 4.846779 AAAAAGTACCGTGCATGTCAAT 57.153 36.364 4.96 0.00 0.00 2.57
588 593 5.950758 AAAAAGTACCGTGCATGTCAATA 57.049 34.783 4.96 0.00 0.00 1.90
591 596 6.509418 AAAGTACCGTGCATGTCAATAAAT 57.491 33.333 4.96 0.00 0.00 1.40
594 599 7.618502 AGTACCGTGCATGTCAATAAATTTA 57.381 32.000 4.96 0.00 0.00 1.40
595 600 7.469260 AGTACCGTGCATGTCAATAAATTTAC 58.531 34.615 4.96 0.00 0.00 2.01
599 605 6.417635 CCGTGCATGTCAATAAATTTACCATC 59.582 38.462 4.96 0.00 0.00 3.51
602 608 7.981225 GTGCATGTCAATAAATTTACCATCCTT 59.019 33.333 0.00 0.00 0.00 3.36
603 609 7.980662 TGCATGTCAATAAATTTACCATCCTTG 59.019 33.333 0.00 0.70 0.00 3.61
622 628 8.849168 CATCCTTGTATCACTTAAATTGCCATA 58.151 33.333 0.00 0.00 0.00 2.74
623 629 8.815565 TCCTTGTATCACTTAAATTGCCATAA 57.184 30.769 0.00 0.00 0.00 1.90
651 657 6.342111 ACGTTTGGTTTACCATGTTCAAATT 58.658 32.000 1.81 0.00 46.97 1.82
652 658 6.256757 ACGTTTGGTTTACCATGTTCAAATTG 59.743 34.615 1.81 0.00 46.97 2.32
653 659 6.426327 GTTTGGTTTACCATGTTCAAATTGC 58.574 36.000 1.81 0.00 46.97 3.56
655 661 5.674525 TGGTTTACCATGTTCAAATTGCAA 58.325 33.333 0.00 0.00 42.01 4.08
658 664 6.037610 GGTTTACCATGTTCAAATTGCAAACA 59.962 34.615 1.71 2.81 37.32 2.83
661 667 6.303021 ACCATGTTCAAATTGCAAACATTC 57.697 33.333 1.71 0.00 40.63 2.67
662 668 5.821470 ACCATGTTCAAATTGCAAACATTCA 59.179 32.000 1.71 0.00 40.63 2.57
668 674 9.322773 TGTTCAAATTGCAAACATTCAGAATTA 57.677 25.926 1.71 0.00 0.00 1.40
669 675 9.801714 GTTCAAATTGCAAACATTCAGAATTAG 57.198 29.630 1.71 0.00 0.00 1.73
675 681 8.746922 TTGCAAACATTCAGAATTAGTCATTC 57.253 30.769 0.00 0.00 41.73 2.67
676 682 7.315142 TGCAAACATTCAGAATTAGTCATTCC 58.685 34.615 0.00 0.00 42.31 3.01
678 684 7.487189 GCAAACATTCAGAATTAGTCATTCCTG 59.513 37.037 0.00 0.00 42.31 3.86
682 688 7.555554 ACATTCAGAATTAGTCATTCCTGAAGG 59.444 37.037 0.00 0.00 42.31 3.46
683 689 6.874278 TCAGAATTAGTCATTCCTGAAGGA 57.126 37.500 0.00 0.00 42.31 3.36
696 702 5.930837 TCCTGAAGGAAAAACACAACAAT 57.069 34.783 0.00 0.00 42.18 2.71
731 737 0.106708 ACAAGAGAAGCGACAAGGCA 59.893 50.000 0.00 0.00 34.64 4.75
742 748 2.129555 GACAAGGCAGCTGGGAGGAA 62.130 60.000 17.12 0.00 0.00 3.36
743 749 1.305623 CAAGGCAGCTGGGAGGAAT 59.694 57.895 17.12 0.00 0.00 3.01
753 759 4.010349 AGCTGGGAGGAATAAAACGAAAG 58.990 43.478 0.00 0.00 0.00 2.62
847 854 3.978855 ACCGAAAAACAAAAAGCTATCGC 59.021 39.130 0.00 0.00 0.00 4.58
939 1255 2.027688 CGATCGAAGGTAAACGTCAAGC 59.972 50.000 10.26 0.00 0.00 4.01
990 1322 1.814527 GTCCGCTACACCCGATTCT 59.185 57.895 0.00 0.00 0.00 2.40
1061 1423 3.696051 GACAGAGCTGGCATTAATTTGGA 59.304 43.478 0.00 0.00 38.82 3.53
1062 1424 3.698040 ACAGAGCTGGCATTAATTTGGAG 59.302 43.478 0.00 0.00 34.19 3.86
1063 1425 3.067742 CAGAGCTGGCATTAATTTGGAGG 59.932 47.826 0.00 0.00 0.00 4.30
1200 1594 1.514443 CGTTCCTTCTCCTCGCGAC 60.514 63.158 3.71 0.00 0.00 5.19
1241 1635 0.457509 CGAGCTCAGCACGTTCATCT 60.458 55.000 15.40 0.00 37.80 2.90
1264 1658 0.322975 ACGTGCAAGCAGAGGAGAAT 59.677 50.000 0.00 0.00 0.00 2.40
1522 9311 1.081242 GCGGAACTACACGTCGGAA 60.081 57.895 0.00 0.00 0.00 4.30
1751 9557 2.233271 CTGTTGATGAGTTTGGGCACT 58.767 47.619 0.00 0.00 0.00 4.40
1888 9694 1.191647 GTGTGCTACGGAAAAGTCGTG 59.808 52.381 0.00 0.00 41.24 4.35
1927 9733 2.579873 GACATACTGGCTGGCATTGAT 58.420 47.619 3.74 0.00 0.00 2.57
2139 9959 2.889617 CGAGTACCATGGACCGCA 59.110 61.111 21.47 0.00 0.00 5.69
2374 10206 3.311110 GGTGGTGGAGAGTGCCGA 61.311 66.667 0.00 0.00 0.00 5.54
2396 10228 1.815003 CGTCGGCATGATCTTGGCA 60.815 57.895 27.53 15.82 41.97 4.92
2435 10267 1.003839 CGACAAGTTAGCCCAGGCA 60.004 57.895 12.03 0.00 44.88 4.75
2441 10273 0.179001 AGTTAGCCCAGGCAAACGTT 60.179 50.000 12.03 0.00 44.88 3.99
2528 10360 2.415843 CCGGTCGTGCATATCGGT 59.584 61.111 13.91 0.00 36.38 4.69
2720 13307 0.251916 CTGGGCCGACCTTCAACATA 59.748 55.000 0.00 0.00 41.11 2.29
2852 13439 2.885861 GACATCACCGACCGCTCT 59.114 61.111 0.00 0.00 0.00 4.09
3012 13599 1.448540 ATGTACACGAGCCAGCAGC 60.449 57.895 0.00 0.00 44.25 5.25
3109 13699 0.970937 ATCTCGGTCGCTTTCCCAGA 60.971 55.000 0.00 0.00 0.00 3.86
3179 13793 2.686106 GGGGAGGTGCCTTCGGTA 60.686 66.667 0.00 0.00 36.66 4.02
3190 13804 0.947244 CCTTCGGTATACTACGCGGT 59.053 55.000 12.47 1.27 0.00 5.68
3292 13906 2.231964 TCTTTTCGGTATACGTGTGGCT 59.768 45.455 0.00 0.00 44.69 4.75
3325 13939 2.776526 AAGGGTGGTGCAGGGTGA 60.777 61.111 0.00 0.00 0.00 4.02
3356 13970 0.454600 TATCCGAGAAGCACACCGTC 59.545 55.000 0.00 0.00 0.00 4.79
3423 14037 4.207165 TCTCACATGATAGGTCGACATGA 58.793 43.478 18.91 1.43 42.41 3.07
3446 14252 7.204604 TGACTCAAGTACGTTTATGTCTTTCA 58.795 34.615 0.00 0.00 0.00 2.69
3448 14254 6.143438 ACTCAAGTACGTTTATGTCTTTCACG 59.857 38.462 0.00 0.00 0.00 4.35
3522 14330 4.399618 GCCTAAGGAAGGGTGATCTTTTTC 59.600 45.833 0.00 0.00 46.65 2.29
3525 14333 6.151817 CCTAAGGAAGGGTGATCTTTTTCTTG 59.848 42.308 0.00 0.00 42.32 3.02
3545 14357 0.924090 AAAAGGAGGATAACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
3547 14362 3.567209 GGAGGATAACCCCCGGCC 61.567 72.222 0.00 0.00 36.73 6.13
3556 14371 3.488569 CCCCCGGCCTCTGCATAA 61.489 66.667 0.00 0.00 40.13 1.90
3586 14401 5.009911 CACACATTCATCTTTGAAGGGTTGA 59.990 40.000 5.51 0.00 45.56 3.18
3592 14407 1.673920 TCTTTGAAGGGTTGAACGTGC 59.326 47.619 0.00 0.00 0.00 5.34
3911 15857 6.090483 TGAGAAAATATTTGGTTTGGCGAA 57.910 33.333 0.39 0.00 0.00 4.70
3912 15858 5.923684 TGAGAAAATATTTGGTTTGGCGAAC 59.076 36.000 9.21 9.21 37.53 3.95
3941 15889 9.793259 GGGAGATGATGGAGTGTATTTTATTTA 57.207 33.333 0.00 0.00 0.00 1.40
4038 15990 2.229062 TGTGGAAATTTTCGCGCCAATA 59.771 40.909 0.00 0.00 0.00 1.90
4057 16012 7.023575 GCCAATAGTTGCATGTACTATATTGC 58.976 38.462 17.46 15.92 37.73 3.56
4077 16032 9.948964 ATATTGCTGCTCTAATATCACATGTTA 57.051 29.630 0.00 0.00 0.00 2.41
4151 16109 4.489306 AGGTAGATGTCTAACAAAGCCC 57.511 45.455 7.75 0.00 38.59 5.19
4189 16147 0.106015 AACAGCCAAAGCCACCTTCT 60.106 50.000 0.00 0.00 41.25 2.85
4190 16148 0.538287 ACAGCCAAAGCCACCTTCTC 60.538 55.000 0.00 0.00 41.25 2.87
4191 16149 1.302832 AGCCAAAGCCACCTTCTCG 60.303 57.895 0.00 0.00 41.25 4.04
4199 16157 4.421479 CACCTTCTCGGCGAGCGT 62.421 66.667 31.01 22.17 35.61 5.07
4234 16192 3.220110 ACAAGCTTGATGATATGCCCTG 58.780 45.455 32.50 1.76 0.00 4.45
4287 16248 3.058160 GCCCTGACAGTTGCGCAT 61.058 61.111 12.75 0.00 0.00 4.73
4300 16261 3.204827 CGCATAGCCACCCTGCAC 61.205 66.667 0.00 0.00 35.64 4.57
4337 16298 1.303236 CATGGGGGAGTTGTCGCAA 60.303 57.895 0.00 0.00 37.37 4.85
4414 16375 2.892852 GGCAGCAATGGCAATAGGAATA 59.107 45.455 0.00 0.00 44.61 1.75
4416 16377 4.491676 GCAGCAATGGCAATAGGAATATG 58.508 43.478 0.00 0.00 44.61 1.78
4419 16380 5.242171 CAGCAATGGCAATAGGAATATGTCA 59.758 40.000 0.00 0.00 44.61 3.58
4421 16382 5.336213 GCAATGGCAATAGGAATATGTCAGG 60.336 44.000 0.00 0.00 40.72 3.86
4433 16394 0.941963 ATGTCAGGGAGTAGGGGCTA 59.058 55.000 0.00 0.00 0.00 3.93
4436 16397 2.198980 AGGGAGTAGGGGCTAGCG 59.801 66.667 9.00 0.00 0.00 4.26
4484 16445 2.325082 CCTGGGGTTGCGAAACGAG 61.325 63.158 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.189736 TCTTCCATAACCAGTGTTAGAGCAT 59.810 40.000 0.00 0.00 40.16 3.79
9 10 4.530553 TCTTCCATAACCAGTGTTAGAGCA 59.469 41.667 0.00 0.00 40.16 4.26
10 11 5.086104 TCTTCCATAACCAGTGTTAGAGC 57.914 43.478 0.00 0.00 40.16 4.09
11 12 6.334202 GTCTCTTCCATAACCAGTGTTAGAG 58.666 44.000 0.00 0.00 40.16 2.43
12 13 5.105877 CGTCTCTTCCATAACCAGTGTTAGA 60.106 44.000 0.00 0.00 40.16 2.10
13 14 5.103000 CGTCTCTTCCATAACCAGTGTTAG 58.897 45.833 0.00 0.00 40.16 2.34
14 15 4.768448 TCGTCTCTTCCATAACCAGTGTTA 59.232 41.667 0.00 0.00 41.03 2.41
15 16 3.576982 TCGTCTCTTCCATAACCAGTGTT 59.423 43.478 0.00 0.00 38.52 3.32
16 17 3.162666 TCGTCTCTTCCATAACCAGTGT 58.837 45.455 0.00 0.00 0.00 3.55
17 18 3.868757 TCGTCTCTTCCATAACCAGTG 57.131 47.619 0.00 0.00 0.00 3.66
18 19 5.178797 CAATTCGTCTCTTCCATAACCAGT 58.821 41.667 0.00 0.00 0.00 4.00
19 20 4.572389 CCAATTCGTCTCTTCCATAACCAG 59.428 45.833 0.00 0.00 0.00 4.00
20 21 4.224147 TCCAATTCGTCTCTTCCATAACCA 59.776 41.667 0.00 0.00 0.00 3.67
21 22 4.571176 GTCCAATTCGTCTCTTCCATAACC 59.429 45.833 0.00 0.00 0.00 2.85
22 23 4.267928 CGTCCAATTCGTCTCTTCCATAAC 59.732 45.833 0.00 0.00 0.00 1.89
23 24 4.081862 ACGTCCAATTCGTCTCTTCCATAA 60.082 41.667 0.00 0.00 36.85 1.90
24 25 3.446161 ACGTCCAATTCGTCTCTTCCATA 59.554 43.478 0.00 0.00 36.85 2.74
25 26 2.233922 ACGTCCAATTCGTCTCTTCCAT 59.766 45.455 0.00 0.00 36.85 3.41
26 27 1.616865 ACGTCCAATTCGTCTCTTCCA 59.383 47.619 0.00 0.00 36.85 3.53
27 28 2.365408 ACGTCCAATTCGTCTCTTCC 57.635 50.000 0.00 0.00 36.85 3.46
28 29 4.727235 AAAACGTCCAATTCGTCTCTTC 57.273 40.909 0.00 0.00 40.69 2.87
29 30 4.814771 AGAAAAACGTCCAATTCGTCTCTT 59.185 37.500 0.00 0.00 40.69 2.85
30 31 4.377897 AGAAAAACGTCCAATTCGTCTCT 58.622 39.130 0.00 0.00 40.69 3.10
31 32 4.727235 AGAAAAACGTCCAATTCGTCTC 57.273 40.909 0.00 0.00 40.69 3.36
32 33 4.261031 CCAAGAAAAACGTCCAATTCGTCT 60.261 41.667 0.00 0.00 40.69 4.18
33 34 3.972502 CCAAGAAAAACGTCCAATTCGTC 59.027 43.478 0.00 0.00 40.69 4.20
34 35 3.628487 TCCAAGAAAAACGTCCAATTCGT 59.372 39.130 0.00 0.00 43.45 3.85
35 36 4.024387 TCTCCAAGAAAAACGTCCAATTCG 60.024 41.667 0.00 0.00 0.00 3.34
36 37 5.432885 TCTCCAAGAAAAACGTCCAATTC 57.567 39.130 0.00 0.00 0.00 2.17
37 38 5.845391 TTCTCCAAGAAAAACGTCCAATT 57.155 34.783 0.00 0.00 29.99 2.32
38 39 5.126384 TGTTTCTCCAAGAAAAACGTCCAAT 59.874 36.000 3.82 0.00 44.84 3.16
39 40 4.459685 TGTTTCTCCAAGAAAAACGTCCAA 59.540 37.500 3.82 0.00 44.84 3.53
40 41 4.011023 TGTTTCTCCAAGAAAAACGTCCA 58.989 39.130 3.82 0.00 44.84 4.02
41 42 4.334481 TCTGTTTCTCCAAGAAAAACGTCC 59.666 41.667 3.82 0.00 44.84 4.79
42 43 5.263948 GTCTGTTTCTCCAAGAAAAACGTC 58.736 41.667 3.82 0.00 44.84 4.34
43 44 4.201783 CGTCTGTTTCTCCAAGAAAAACGT 60.202 41.667 16.75 0.00 44.84 3.99
44 45 4.033587 TCGTCTGTTTCTCCAAGAAAAACG 59.966 41.667 17.86 17.86 44.84 3.60
45 46 5.479716 TCGTCTGTTTCTCCAAGAAAAAC 57.520 39.130 3.82 3.28 44.84 2.43
46 47 5.646360 AGTTCGTCTGTTTCTCCAAGAAAAA 59.354 36.000 3.82 0.00 44.84 1.94
47 48 5.064707 CAGTTCGTCTGTTTCTCCAAGAAAA 59.935 40.000 3.82 0.00 44.84 2.29
48 49 4.570772 CAGTTCGTCTGTTTCTCCAAGAAA 59.429 41.667 0.00 0.00 37.27 2.52
49 50 4.119862 CAGTTCGTCTGTTTCTCCAAGAA 58.880 43.478 3.09 0.00 39.17 2.52
50 51 3.492656 CCAGTTCGTCTGTTTCTCCAAGA 60.493 47.826 8.83 0.00 42.19 3.02
51 52 2.802816 CCAGTTCGTCTGTTTCTCCAAG 59.197 50.000 8.83 0.00 42.19 3.61
52 53 2.432874 TCCAGTTCGTCTGTTTCTCCAA 59.567 45.455 8.83 0.00 42.19 3.53
53 54 2.036387 TCCAGTTCGTCTGTTTCTCCA 58.964 47.619 8.83 0.00 42.19 3.86
54 55 2.405172 GTCCAGTTCGTCTGTTTCTCC 58.595 52.381 8.83 0.00 42.19 3.71
55 56 2.052157 CGTCCAGTTCGTCTGTTTCTC 58.948 52.381 8.83 0.00 42.19 2.87
56 57 1.407979 ACGTCCAGTTCGTCTGTTTCT 59.592 47.619 8.83 0.00 42.19 2.52
57 58 1.521423 CACGTCCAGTTCGTCTGTTTC 59.479 52.381 8.83 0.88 42.19 2.78
58 59 1.134907 ACACGTCCAGTTCGTCTGTTT 60.135 47.619 8.83 0.00 42.19 2.83
59 60 0.458669 ACACGTCCAGTTCGTCTGTT 59.541 50.000 8.83 0.00 42.19 3.16
60 61 0.248907 CACACGTCCAGTTCGTCTGT 60.249 55.000 8.83 0.00 42.19 3.41
61 62 1.548973 GCACACGTCCAGTTCGTCTG 61.549 60.000 0.00 4.03 43.27 3.51
62 63 1.299926 GCACACGTCCAGTTCGTCT 60.300 57.895 0.00 0.00 39.55 4.18
63 64 1.299926 AGCACACGTCCAGTTCGTC 60.300 57.895 0.00 0.00 39.55 4.20
64 65 1.591594 CAGCACACGTCCAGTTCGT 60.592 57.895 0.00 0.00 42.33 3.85
65 66 2.310233 CCAGCACACGTCCAGTTCG 61.310 63.158 0.00 0.00 0.00 3.95
66 67 2.607892 GCCAGCACACGTCCAGTTC 61.608 63.158 0.00 0.00 0.00 3.01
67 68 2.591715 GCCAGCACACGTCCAGTT 60.592 61.111 0.00 0.00 0.00 3.16
68 69 3.814615 CTGCCAGCACACGTCCAGT 62.815 63.158 0.00 0.00 0.00 4.00
69 70 3.046087 CTGCCAGCACACGTCCAG 61.046 66.667 0.00 0.00 0.00 3.86
70 71 4.624364 CCTGCCAGCACACGTCCA 62.624 66.667 0.00 0.00 0.00 4.02
72 73 4.314440 TCCCTGCCAGCACACGTC 62.314 66.667 0.00 0.00 0.00 4.34
73 74 4.320456 CTCCCTGCCAGCACACGT 62.320 66.667 0.00 0.00 0.00 4.49
74 75 4.007644 TCTCCCTGCCAGCACACG 62.008 66.667 0.00 0.00 0.00 4.49
75 76 1.544825 TAGTCTCCCTGCCAGCACAC 61.545 60.000 0.00 0.00 0.00 3.82
76 77 0.618680 ATAGTCTCCCTGCCAGCACA 60.619 55.000 0.00 0.00 0.00 4.57
77 78 0.543749 AATAGTCTCCCTGCCAGCAC 59.456 55.000 0.00 0.00 0.00 4.40
78 79 0.543277 CAATAGTCTCCCTGCCAGCA 59.457 55.000 0.00 0.00 0.00 4.41
79 80 0.179034 CCAATAGTCTCCCTGCCAGC 60.179 60.000 0.00 0.00 0.00 4.85
80 81 0.471617 CCCAATAGTCTCCCTGCCAG 59.528 60.000 0.00 0.00 0.00 4.85
81 82 1.635817 GCCCAATAGTCTCCCTGCCA 61.636 60.000 0.00 0.00 0.00 4.92
82 83 1.149401 GCCCAATAGTCTCCCTGCC 59.851 63.158 0.00 0.00 0.00 4.85
83 84 0.548510 AAGCCCAATAGTCTCCCTGC 59.451 55.000 0.00 0.00 0.00 4.85
84 85 1.141858 GGAAGCCCAATAGTCTCCCTG 59.858 57.143 0.00 0.00 0.00 4.45
85 86 1.010170 AGGAAGCCCAATAGTCTCCCT 59.990 52.381 0.00 0.00 33.88 4.20
86 87 1.512735 AGGAAGCCCAATAGTCTCCC 58.487 55.000 0.00 0.00 33.88 4.30
87 88 3.653835 AAAGGAAGCCCAATAGTCTCC 57.346 47.619 0.00 0.00 33.88 3.71
88 89 4.336280 ACAAAAGGAAGCCCAATAGTCTC 58.664 43.478 0.00 0.00 33.88 3.36
89 90 4.388577 ACAAAAGGAAGCCCAATAGTCT 57.611 40.909 0.00 0.00 33.88 3.24
90 91 5.468540 AAACAAAAGGAAGCCCAATAGTC 57.531 39.130 0.00 0.00 33.88 2.59
91 92 5.887214 AAAACAAAAGGAAGCCCAATAGT 57.113 34.783 0.00 0.00 33.88 2.12
92 93 6.210584 TCCTAAAACAAAAGGAAGCCCAATAG 59.789 38.462 0.00 0.00 38.97 1.73
93 94 6.078664 TCCTAAAACAAAAGGAAGCCCAATA 58.921 36.000 0.00 0.00 38.97 1.90
94 95 4.904853 TCCTAAAACAAAAGGAAGCCCAAT 59.095 37.500 0.00 0.00 38.97 3.16
95 96 4.290942 TCCTAAAACAAAAGGAAGCCCAA 58.709 39.130 0.00 0.00 38.97 4.12
96 97 3.917300 TCCTAAAACAAAAGGAAGCCCA 58.083 40.909 0.00 0.00 38.97 5.36
97 98 6.210784 AGTTATCCTAAAACAAAAGGAAGCCC 59.789 38.462 0.00 0.00 44.87 5.19
98 99 7.090808 CAGTTATCCTAAAACAAAAGGAAGCC 58.909 38.462 0.00 0.00 44.87 4.35
99 100 7.595130 CACAGTTATCCTAAAACAAAAGGAAGC 59.405 37.037 0.00 0.00 44.87 3.86
100 101 8.082242 CCACAGTTATCCTAAAACAAAAGGAAG 58.918 37.037 0.00 0.00 44.87 3.46
101 102 7.780745 TCCACAGTTATCCTAAAACAAAAGGAA 59.219 33.333 0.00 0.00 44.87 3.36
102 103 7.291566 TCCACAGTTATCCTAAAACAAAAGGA 58.708 34.615 0.00 0.00 45.76 3.36
103 104 7.230712 ACTCCACAGTTATCCTAAAACAAAAGG 59.769 37.037 0.00 0.00 0.00 3.11
104 105 8.076178 CACTCCACAGTTATCCTAAAACAAAAG 58.924 37.037 0.00 0.00 0.00 2.27
105 106 7.776030 TCACTCCACAGTTATCCTAAAACAAAA 59.224 33.333 0.00 0.00 0.00 2.44
106 107 7.284074 TCACTCCACAGTTATCCTAAAACAAA 58.716 34.615 0.00 0.00 0.00 2.83
107 108 6.833041 TCACTCCACAGTTATCCTAAAACAA 58.167 36.000 0.00 0.00 0.00 2.83
108 109 6.269077 TCTCACTCCACAGTTATCCTAAAACA 59.731 38.462 0.00 0.00 0.00 2.83
109 110 6.590677 GTCTCACTCCACAGTTATCCTAAAAC 59.409 42.308 0.00 0.00 0.00 2.43
110 111 6.571731 CGTCTCACTCCACAGTTATCCTAAAA 60.572 42.308 0.00 0.00 0.00 1.52
111 112 5.105877 CGTCTCACTCCACAGTTATCCTAAA 60.106 44.000 0.00 0.00 0.00 1.85
112 113 4.398358 CGTCTCACTCCACAGTTATCCTAA 59.602 45.833 0.00 0.00 0.00 2.69
113 114 3.945921 CGTCTCACTCCACAGTTATCCTA 59.054 47.826 0.00 0.00 0.00 2.94
114 115 2.755655 CGTCTCACTCCACAGTTATCCT 59.244 50.000 0.00 0.00 0.00 3.24
115 116 2.753452 TCGTCTCACTCCACAGTTATCC 59.247 50.000 0.00 0.00 0.00 2.59
116 117 4.640789 ATCGTCTCACTCCACAGTTATC 57.359 45.455 0.00 0.00 0.00 1.75
117 118 4.382040 CCAATCGTCTCACTCCACAGTTAT 60.382 45.833 0.00 0.00 0.00 1.89
118 119 3.056821 CCAATCGTCTCACTCCACAGTTA 60.057 47.826 0.00 0.00 0.00 2.24
119 120 2.289072 CCAATCGTCTCACTCCACAGTT 60.289 50.000 0.00 0.00 0.00 3.16
120 121 1.273606 CCAATCGTCTCACTCCACAGT 59.726 52.381 0.00 0.00 0.00 3.55
121 122 1.404717 CCCAATCGTCTCACTCCACAG 60.405 57.143 0.00 0.00 0.00 3.66
122 123 0.608130 CCCAATCGTCTCACTCCACA 59.392 55.000 0.00 0.00 0.00 4.17
123 124 0.741221 GCCCAATCGTCTCACTCCAC 60.741 60.000 0.00 0.00 0.00 4.02
124 125 0.904865 AGCCCAATCGTCTCACTCCA 60.905 55.000 0.00 0.00 0.00 3.86
125 126 0.250513 AAGCCCAATCGTCTCACTCC 59.749 55.000 0.00 0.00 0.00 3.85
126 127 1.646189 GAAGCCCAATCGTCTCACTC 58.354 55.000 0.00 0.00 0.00 3.51
127 128 0.108615 CGAAGCCCAATCGTCTCACT 60.109 55.000 0.00 0.00 35.64 3.41
128 129 1.084370 CCGAAGCCCAATCGTCTCAC 61.084 60.000 0.00 0.00 38.60 3.51
129 130 1.218047 CCGAAGCCCAATCGTCTCA 59.782 57.895 0.00 0.00 38.60 3.27
130 131 1.084370 CACCGAAGCCCAATCGTCTC 61.084 60.000 0.00 0.00 38.60 3.36
131 132 1.079127 CACCGAAGCCCAATCGTCT 60.079 57.895 0.00 0.00 38.60 4.18
132 133 2.750888 GCACCGAAGCCCAATCGTC 61.751 63.158 0.00 0.00 38.60 4.20
133 134 2.746277 GCACCGAAGCCCAATCGT 60.746 61.111 0.00 0.00 38.60 3.73
134 135 2.745884 TGCACCGAAGCCCAATCG 60.746 61.111 0.00 0.00 39.92 3.34
135 136 1.926511 CTGTGCACCGAAGCCCAATC 61.927 60.000 15.69 0.00 0.00 2.67
136 137 1.973281 CTGTGCACCGAAGCCCAAT 60.973 57.895 15.69 0.00 0.00 3.16
137 138 2.046009 TACTGTGCACCGAAGCCCAA 62.046 55.000 15.69 0.00 0.00 4.12
138 139 1.836999 ATACTGTGCACCGAAGCCCA 61.837 55.000 15.69 0.00 0.00 5.36
139 140 0.177141 TATACTGTGCACCGAAGCCC 59.823 55.000 15.69 0.00 0.00 5.19
140 141 2.018542 TTATACTGTGCACCGAAGCC 57.981 50.000 15.69 0.00 0.00 4.35
141 142 5.236478 ACATTATTATACTGTGCACCGAAGC 59.764 40.000 15.69 0.00 0.00 3.86
142 143 6.844696 ACATTATTATACTGTGCACCGAAG 57.155 37.500 15.69 7.82 0.00 3.79
143 144 8.896320 ATTACATTATTATACTGTGCACCGAA 57.104 30.769 15.69 0.00 0.00 4.30
144 145 7.601130 GGATTACATTATTATACTGTGCACCGA 59.399 37.037 15.69 0.00 0.00 4.69
145 146 7.411480 CGGATTACATTATTATACTGTGCACCG 60.411 40.741 15.69 11.05 32.05 4.94
146 147 7.386848 ACGGATTACATTATTATACTGTGCACC 59.613 37.037 15.69 0.00 0.00 5.01
147 148 8.306680 ACGGATTACATTATTATACTGTGCAC 57.693 34.615 10.75 10.75 0.00 4.57
148 149 8.896320 AACGGATTACATTATTATACTGTGCA 57.104 30.769 5.63 0.00 0.00 4.57
149 150 9.807386 GAAACGGATTACATTATTATACTGTGC 57.193 33.333 5.63 0.00 0.00 4.57
158 159 9.651913 AATGCAAAAGAAACGGATTACATTATT 57.348 25.926 0.00 0.00 0.00 1.40
159 160 9.651913 AAATGCAAAAGAAACGGATTACATTAT 57.348 25.926 0.00 0.00 0.00 1.28
160 161 9.482627 AAAATGCAAAAGAAACGGATTACATTA 57.517 25.926 0.00 0.00 0.00 1.90
161 162 7.961325 AAATGCAAAAGAAACGGATTACATT 57.039 28.000 0.00 0.00 0.00 2.71
162 163 7.961325 AAAATGCAAAAGAAACGGATTACAT 57.039 28.000 0.00 0.00 0.00 2.29
163 164 7.778470 AAAAATGCAAAAGAAACGGATTACA 57.222 28.000 0.00 0.00 0.00 2.41
185 186 4.566907 GGCCCGCTATATCCTCCATAAAAA 60.567 45.833 0.00 0.00 0.00 1.94
186 187 3.054655 GGCCCGCTATATCCTCCATAAAA 60.055 47.826 0.00 0.00 0.00 1.52
187 188 2.504175 GGCCCGCTATATCCTCCATAAA 59.496 50.000 0.00 0.00 0.00 1.40
188 189 2.116238 GGCCCGCTATATCCTCCATAA 58.884 52.381 0.00 0.00 0.00 1.90
189 190 1.007842 TGGCCCGCTATATCCTCCATA 59.992 52.381 0.00 0.00 0.00 2.74
190 191 0.252696 TGGCCCGCTATATCCTCCAT 60.253 55.000 0.00 0.00 0.00 3.41
191 192 0.472925 TTGGCCCGCTATATCCTCCA 60.473 55.000 0.00 0.00 0.00 3.86
192 193 0.690762 TTTGGCCCGCTATATCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
193 194 1.623811 TCTTTGGCCCGCTATATCCTC 59.376 52.381 0.00 0.00 0.00 3.71
194 195 1.729586 TCTTTGGCCCGCTATATCCT 58.270 50.000 0.00 0.00 0.00 3.24
195 196 2.561478 TTCTTTGGCCCGCTATATCC 57.439 50.000 0.00 0.00 0.00 2.59
196 197 2.162408 GCATTCTTTGGCCCGCTATATC 59.838 50.000 0.00 0.00 0.00 1.63
197 198 2.162681 GCATTCTTTGGCCCGCTATAT 58.837 47.619 0.00 0.00 0.00 0.86
198 199 1.133945 TGCATTCTTTGGCCCGCTATA 60.134 47.619 0.00 0.00 0.00 1.31
199 200 0.395586 TGCATTCTTTGGCCCGCTAT 60.396 50.000 0.00 0.00 0.00 2.97
200 201 0.395586 ATGCATTCTTTGGCCCGCTA 60.396 50.000 0.00 0.00 0.00 4.26
201 202 1.683365 ATGCATTCTTTGGCCCGCT 60.683 52.632 0.00 0.00 0.00 5.52
202 203 1.519898 CATGCATTCTTTGGCCCGC 60.520 57.895 0.00 0.00 0.00 6.13
203 204 0.179129 GACATGCATTCTTTGGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
204 205 1.135721 GAGACATGCATTCTTTGGCCC 59.864 52.381 0.00 0.00 0.00 5.80
205 206 1.820519 TGAGACATGCATTCTTTGGCC 59.179 47.619 0.00 0.00 0.00 5.36
206 207 2.730090 CGTGAGACATGCATTCTTTGGC 60.730 50.000 0.00 0.00 0.00 4.52
207 208 2.159476 CCGTGAGACATGCATTCTTTGG 60.159 50.000 0.00 4.06 0.00 3.28
208 209 2.485426 ACCGTGAGACATGCATTCTTTG 59.515 45.455 0.00 0.00 0.00 2.77
209 210 2.783135 ACCGTGAGACATGCATTCTTT 58.217 42.857 0.00 0.00 0.00 2.52
210 211 2.479566 ACCGTGAGACATGCATTCTT 57.520 45.000 0.00 0.00 0.00 2.52
211 212 2.079158 CAACCGTGAGACATGCATTCT 58.921 47.619 0.00 3.64 0.00 2.40
212 213 1.466360 GCAACCGTGAGACATGCATTC 60.466 52.381 0.00 0.00 37.00 2.67
213 214 0.523072 GCAACCGTGAGACATGCATT 59.477 50.000 0.00 0.00 37.00 3.56
214 215 0.606130 TGCAACCGTGAGACATGCAT 60.606 50.000 0.00 0.00 41.67 3.96
215 216 1.227793 TGCAACCGTGAGACATGCA 60.228 52.632 0.00 0.00 44.07 3.96
216 217 0.179181 CATGCAACCGTGAGACATGC 60.179 55.000 0.00 0.00 37.52 4.06
217 218 1.135888 CACATGCAACCGTGAGACATG 60.136 52.381 8.20 0.00 42.92 3.21
218 219 1.159285 CACATGCAACCGTGAGACAT 58.841 50.000 8.20 0.00 35.02 3.06
219 220 0.884259 CCACATGCAACCGTGAGACA 60.884 55.000 13.99 0.00 35.02 3.41
220 221 0.602638 TCCACATGCAACCGTGAGAC 60.603 55.000 13.99 0.00 35.02 3.36
221 222 0.602638 GTCCACATGCAACCGTGAGA 60.603 55.000 13.99 8.04 35.02 3.27
222 223 0.884259 TGTCCACATGCAACCGTGAG 60.884 55.000 13.99 6.26 35.02 3.51
223 224 1.147153 TGTCCACATGCAACCGTGA 59.853 52.632 13.99 0.00 35.02 4.35
224 225 1.282570 GTGTCCACATGCAACCGTG 59.717 57.895 7.18 7.18 0.00 4.94
225 226 1.153066 TGTGTCCACATGCAACCGT 60.153 52.632 0.00 0.00 36.21 4.83
226 227 3.743208 TGTGTCCACATGCAACCG 58.257 55.556 0.00 0.00 36.21 4.44
234 235 1.454572 GCCACAGCAATGTGTCCACA 61.455 55.000 2.09 2.09 41.79 4.17
235 236 1.286880 GCCACAGCAATGTGTCCAC 59.713 57.895 7.53 0.00 38.07 4.02
236 237 2.260154 CGCCACAGCAATGTGTCCA 61.260 57.895 7.53 0.00 39.83 4.02
237 238 2.562912 CGCCACAGCAATGTGTCC 59.437 61.111 7.53 0.00 39.83 4.02
238 239 1.915614 CTCCGCCACAGCAATGTGTC 61.916 60.000 7.53 0.00 39.83 3.67
239 240 1.968017 CTCCGCCACAGCAATGTGT 60.968 57.895 7.53 0.00 39.83 3.72
240 241 1.236616 TTCTCCGCCACAGCAATGTG 61.237 55.000 1.37 1.37 39.83 3.21
241 242 0.322816 ATTCTCCGCCACAGCAATGT 60.323 50.000 0.00 0.00 39.83 2.71
242 243 0.813184 AATTCTCCGCCACAGCAATG 59.187 50.000 0.00 0.00 39.83 2.82
243 244 0.813184 CAATTCTCCGCCACAGCAAT 59.187 50.000 0.00 0.00 39.83 3.56
244 245 0.250684 TCAATTCTCCGCCACAGCAA 60.251 50.000 0.00 0.00 39.83 3.91
245 246 0.035152 ATCAATTCTCCGCCACAGCA 60.035 50.000 0.00 0.00 39.83 4.41
246 247 0.379669 CATCAATTCTCCGCCACAGC 59.620 55.000 0.00 0.00 0.00 4.40
247 248 1.667724 GTCATCAATTCTCCGCCACAG 59.332 52.381 0.00 0.00 0.00 3.66
248 249 1.737838 GTCATCAATTCTCCGCCACA 58.262 50.000 0.00 0.00 0.00 4.17
249 250 0.652592 CGTCATCAATTCTCCGCCAC 59.347 55.000 0.00 0.00 0.00 5.01
250 251 0.249120 ACGTCATCAATTCTCCGCCA 59.751 50.000 0.00 0.00 0.00 5.69
251 252 0.652592 CACGTCATCAATTCTCCGCC 59.347 55.000 0.00 0.00 0.00 6.13
252 253 0.652592 CCACGTCATCAATTCTCCGC 59.347 55.000 0.00 0.00 0.00 5.54
253 254 0.652592 GCCACGTCATCAATTCTCCG 59.347 55.000 0.00 0.00 0.00 4.63
254 255 1.017387 GGCCACGTCATCAATTCTCC 58.983 55.000 0.00 0.00 0.00 3.71
255 256 1.737838 TGGCCACGTCATCAATTCTC 58.262 50.000 0.00 0.00 0.00 2.87
256 257 2.198827 TTGGCCACGTCATCAATTCT 57.801 45.000 3.88 0.00 0.00 2.40
257 258 3.181397 CATTTGGCCACGTCATCAATTC 58.819 45.455 3.88 0.00 0.00 2.17
258 259 2.674747 GCATTTGGCCACGTCATCAATT 60.675 45.455 3.88 0.00 36.11 2.32
259 260 1.135024 GCATTTGGCCACGTCATCAAT 60.135 47.619 3.88 0.00 36.11 2.57
260 261 0.243365 GCATTTGGCCACGTCATCAA 59.757 50.000 3.88 0.00 36.11 2.57
261 262 0.608856 AGCATTTGGCCACGTCATCA 60.609 50.000 3.88 0.00 46.50 3.07
262 263 0.179156 CAGCATTTGGCCACGTCATC 60.179 55.000 3.88 0.00 46.50 2.92
263 264 0.608856 TCAGCATTTGGCCACGTCAT 60.609 50.000 3.88 0.00 46.50 3.06
264 265 0.608856 ATCAGCATTTGGCCACGTCA 60.609 50.000 3.88 0.00 46.50 4.35
265 266 0.179156 CATCAGCATTTGGCCACGTC 60.179 55.000 3.88 0.00 46.50 4.34
266 267 0.895100 ACATCAGCATTTGGCCACGT 60.895 50.000 3.88 0.00 46.50 4.49
267 268 0.457166 CACATCAGCATTTGGCCACG 60.457 55.000 3.88 0.00 46.50 4.94
268 269 0.108520 CCACATCAGCATTTGGCCAC 60.109 55.000 3.88 0.00 46.50 5.01
269 270 0.251698 TCCACATCAGCATTTGGCCA 60.252 50.000 0.00 0.00 46.50 5.36
270 271 1.117150 ATCCACATCAGCATTTGGCC 58.883 50.000 0.00 0.00 46.50 5.36
271 272 2.288030 GCTATCCACATCAGCATTTGGC 60.288 50.000 0.00 0.00 45.30 4.52
272 273 3.220110 AGCTATCCACATCAGCATTTGG 58.780 45.455 0.00 0.00 37.78 3.28
273 274 4.607955 CAAGCTATCCACATCAGCATTTG 58.392 43.478 0.00 0.00 37.78 2.32
274 275 3.067742 GCAAGCTATCCACATCAGCATTT 59.932 43.478 0.00 0.00 37.78 2.32
275 276 2.621998 GCAAGCTATCCACATCAGCATT 59.378 45.455 0.00 0.00 37.78 3.56
276 277 2.228059 GCAAGCTATCCACATCAGCAT 58.772 47.619 0.00 0.00 37.78 3.79
277 278 1.065272 TGCAAGCTATCCACATCAGCA 60.065 47.619 0.00 0.00 37.78 4.41
278 279 1.671979 TGCAAGCTATCCACATCAGC 58.328 50.000 0.00 0.00 35.49 4.26
279 280 3.211865 ACATGCAAGCTATCCACATCAG 58.788 45.455 0.00 0.00 0.00 2.90
280 281 3.286329 ACATGCAAGCTATCCACATCA 57.714 42.857 0.00 0.00 0.00 3.07
281 282 4.644103 AAACATGCAAGCTATCCACATC 57.356 40.909 0.00 0.00 0.00 3.06
282 283 5.439721 TCTAAACATGCAAGCTATCCACAT 58.560 37.500 0.00 0.00 0.00 3.21
283 284 4.842574 TCTAAACATGCAAGCTATCCACA 58.157 39.130 0.00 0.00 0.00 4.17
284 285 7.496529 TTATCTAAACATGCAAGCTATCCAC 57.503 36.000 0.00 0.00 0.00 4.02
285 286 8.696043 ATTTATCTAAACATGCAAGCTATCCA 57.304 30.769 0.00 0.00 0.00 3.41
289 290 9.627123 ACCTTATTTATCTAAACATGCAAGCTA 57.373 29.630 0.00 0.00 0.00 3.32
290 291 8.525290 ACCTTATTTATCTAAACATGCAAGCT 57.475 30.769 0.00 0.00 0.00 3.74
291 292 9.884465 CTACCTTATTTATCTAAACATGCAAGC 57.116 33.333 0.00 0.00 0.00 4.01
340 341 9.965902 CCAGCTCCCTAATACTCATATTTTTAT 57.034 33.333 0.00 0.00 32.98 1.40
341 342 9.166222 TCCAGCTCCCTAATACTCATATTTTTA 57.834 33.333 0.00 0.00 32.98 1.52
342 343 7.939588 GTCCAGCTCCCTAATACTCATATTTTT 59.060 37.037 0.00 0.00 32.98 1.94
343 344 7.454225 GTCCAGCTCCCTAATACTCATATTTT 58.546 38.462 0.00 0.00 32.98 1.82
344 345 6.295349 CGTCCAGCTCCCTAATACTCATATTT 60.295 42.308 0.00 0.00 32.98 1.40
352 353 2.584236 TCTCGTCCAGCTCCCTAATAC 58.416 52.381 0.00 0.00 0.00 1.89
355 356 1.183549 GTTCTCGTCCAGCTCCCTAA 58.816 55.000 0.00 0.00 0.00 2.69
372 373 4.771590 TCACGTTCTTACTATGGTCGTT 57.228 40.909 0.00 0.00 0.00 3.85
374 375 4.478699 TGTTCACGTTCTTACTATGGTCG 58.521 43.478 0.00 0.00 0.00 4.79
415 416 7.341512 TCGGGGTTCTTTTTCTTTTACCTTTTA 59.658 33.333 0.00 0.00 0.00 1.52
420 421 5.717078 ATCGGGGTTCTTTTTCTTTTACC 57.283 39.130 0.00 0.00 0.00 2.85
434 435 2.307686 ACATTCAGGTGTTATCGGGGTT 59.692 45.455 0.00 0.00 0.00 4.11
435 436 1.913419 ACATTCAGGTGTTATCGGGGT 59.087 47.619 0.00 0.00 0.00 4.95
439 440 4.006989 TCCCAAACATTCAGGTGTTATCG 58.993 43.478 0.00 0.00 41.22 2.92
447 448 5.410355 ACATCAAATCCCAAACATTCAGG 57.590 39.130 0.00 0.00 0.00 3.86
459 460 2.730928 CGTTTGTGCCAACATCAAATCC 59.269 45.455 0.00 0.00 35.83 3.01
467 468 1.199327 TCGAAAACGTTTGTGCCAACA 59.801 42.857 15.46 0.00 0.00 3.33
468 469 1.897641 TCGAAAACGTTTGTGCCAAC 58.102 45.000 15.46 0.36 0.00 3.77
469 470 2.455032 CATCGAAAACGTTTGTGCCAA 58.545 42.857 15.46 0.00 0.00 4.52
473 474 2.112475 TGCCATCGAAAACGTTTGTG 57.888 45.000 15.46 10.24 0.00 3.33
475 476 4.707210 AAATTGCCATCGAAAACGTTTG 57.293 36.364 15.46 2.92 0.00 2.93
486 490 5.431765 TCCTCTCTCACTAAAATTGCCATC 58.568 41.667 0.00 0.00 0.00 3.51
503 507 6.398918 TGCTAACTAAACTTGTCATCCTCTC 58.601 40.000 0.00 0.00 0.00 3.20
504 508 6.360370 TGCTAACTAAACTTGTCATCCTCT 57.640 37.500 0.00 0.00 0.00 3.69
505 509 6.651225 ACTTGCTAACTAAACTTGTCATCCTC 59.349 38.462 0.00 0.00 0.00 3.71
516 521 9.698617 CGAATTTACCATACTTGCTAACTAAAC 57.301 33.333 0.00 0.00 0.00 2.01
521 526 6.959311 CACACGAATTTACCATACTTGCTAAC 59.041 38.462 0.00 0.00 0.00 2.34
524 529 5.001232 ACACACGAATTTACCATACTTGCT 58.999 37.500 0.00 0.00 0.00 3.91
525 530 5.291293 ACACACGAATTTACCATACTTGC 57.709 39.130 0.00 0.00 0.00 4.01
526 531 5.119588 ACGACACACGAATTTACCATACTTG 59.880 40.000 0.00 0.00 45.77 3.16
530 535 4.558178 ACACGACACACGAATTTACCATA 58.442 39.130 0.00 0.00 45.77 2.74
534 539 7.825627 AAAAATACACGACACACGAATTTAC 57.174 32.000 0.00 0.00 45.77 2.01
570 575 6.509418 AAATTTATTGACATGCACGGTACT 57.491 33.333 0.00 0.00 0.00 2.73
571 576 6.689669 GGTAAATTTATTGACATGCACGGTAC 59.310 38.462 0.31 0.00 0.00 3.34
576 581 7.491682 AGGATGGTAAATTTATTGACATGCAC 58.508 34.615 18.84 2.37 0.00 4.57
594 599 6.096846 GGCAATTTAAGTGATACAAGGATGGT 59.903 38.462 0.00 0.00 0.00 3.55
595 600 6.096705 TGGCAATTTAAGTGATACAAGGATGG 59.903 38.462 0.00 0.00 0.00 3.51
599 605 9.868277 TTTTATGGCAATTTAAGTGATACAAGG 57.132 29.630 0.00 0.00 0.00 3.61
633 639 6.037610 TGTTTGCAATTTGAACATGGTAAACC 59.962 34.615 0.00 0.00 0.00 3.27
634 640 7.009568 TGTTTGCAATTTGAACATGGTAAAC 57.990 32.000 0.00 0.00 0.00 2.01
638 644 5.821470 TGAATGTTTGCAATTTGAACATGGT 59.179 32.000 13.07 0.00 41.65 3.55
643 649 9.801714 CTAATTCTGAATGTTTGCAATTTGAAC 57.198 29.630 0.00 0.00 0.00 3.18
644 650 9.545105 ACTAATTCTGAATGTTTGCAATTTGAA 57.455 25.926 0.00 2.07 0.00 2.69
651 657 7.177216 AGGAATGACTAATTCTGAATGTTTGCA 59.823 33.333 3.22 0.42 43.71 4.08
652 658 7.487189 CAGGAATGACTAATTCTGAATGTTTGC 59.513 37.037 3.22 0.00 43.71 3.68
653 659 8.733458 TCAGGAATGACTAATTCTGAATGTTTG 58.267 33.333 3.22 0.00 43.71 2.93
655 661 8.868522 TTCAGGAATGACTAATTCTGAATGTT 57.131 30.769 3.22 0.00 43.71 2.71
658 664 7.865820 TCCTTCAGGAATGACTAATTCTGAAT 58.134 34.615 0.00 0.00 43.71 2.57
675 681 7.114811 CGATTATTGTTGTGTTTTTCCTTCAGG 59.885 37.037 0.00 0.00 0.00 3.86
676 682 7.860373 TCGATTATTGTTGTGTTTTTCCTTCAG 59.140 33.333 0.00 0.00 0.00 3.02
678 684 7.646130 TGTCGATTATTGTTGTGTTTTTCCTTC 59.354 33.333 0.00 0.00 0.00 3.46
682 688 7.148820 CCCATGTCGATTATTGTTGTGTTTTTC 60.149 37.037 0.00 0.00 0.00 2.29
683 689 6.644592 CCCATGTCGATTATTGTTGTGTTTTT 59.355 34.615 0.00 0.00 0.00 1.94
688 694 4.394610 TGTCCCATGTCGATTATTGTTGTG 59.605 41.667 0.00 0.00 0.00 3.33
693 699 5.353956 TCTTGTTGTCCCATGTCGATTATTG 59.646 40.000 0.00 0.00 0.00 1.90
695 701 5.097742 TCTTGTTGTCCCATGTCGATTAT 57.902 39.130 0.00 0.00 0.00 1.28
696 702 4.221924 TCTCTTGTTGTCCCATGTCGATTA 59.778 41.667 0.00 0.00 0.00 1.75
713 719 0.795085 CTGCCTTGTCGCTTCTCTTG 59.205 55.000 0.00 0.00 0.00 3.02
714 720 0.952984 GCTGCCTTGTCGCTTCTCTT 60.953 55.000 0.00 0.00 0.00 2.85
718 724 2.684843 CCAGCTGCCTTGTCGCTTC 61.685 63.158 8.66 0.00 0.00 3.86
731 737 3.713826 TTCGTTTTATTCCTCCCAGCT 57.286 42.857 0.00 0.00 0.00 4.24
796 802 9.826574 GTGTGTATAAAACCCACTTAGATATGA 57.173 33.333 0.00 0.00 34.04 2.15
809 816 3.056588 TCGGTGGGTGTGTATAAAACC 57.943 47.619 0.00 0.00 0.00 3.27
816 823 2.414994 TGTTTTTCGGTGGGTGTGTA 57.585 45.000 0.00 0.00 0.00 2.90
847 854 7.851963 ACATGCTCAAAATTTTGATTTGAAACG 59.148 29.630 28.86 17.58 45.26 3.60
990 1322 3.491104 GGGCGTTGGTTGTTTTTACATGA 60.491 43.478 0.00 0.00 0.00 3.07
1055 1417 4.080863 GTCACAGTATCCAGTCCTCCAAAT 60.081 45.833 0.00 0.00 0.00 2.32
1057 1419 2.832129 GTCACAGTATCCAGTCCTCCAA 59.168 50.000 0.00 0.00 0.00 3.53
1058 1420 2.043115 AGTCACAGTATCCAGTCCTCCA 59.957 50.000 0.00 0.00 0.00 3.86
1061 1423 2.043115 TCCAGTCACAGTATCCAGTCCT 59.957 50.000 0.00 0.00 0.00 3.85
1062 1424 2.166664 GTCCAGTCACAGTATCCAGTCC 59.833 54.545 0.00 0.00 0.00 3.85
1063 1425 2.166664 GGTCCAGTCACAGTATCCAGTC 59.833 54.545 0.00 0.00 0.00 3.51
1126 1519 3.572584 CATGGCTTTTCTTGCTTGAGAC 58.427 45.455 0.00 0.00 0.00 3.36
1241 1635 1.597854 CCTCTGCTTGCACGTGGAA 60.598 57.895 21.67 21.67 0.00 3.53
1342 1739 2.488355 CTCGCGACGTGGTGGTAT 59.512 61.111 3.71 0.00 0.00 2.73
1406 9192 2.440247 GAGGAAACCGGGCATGGG 60.440 66.667 6.32 0.00 0.00 4.00
1417 9203 4.735132 CGGGTCGCGCTGAGGAAA 62.735 66.667 5.56 0.00 0.00 3.13
1735 9527 0.770499 TCCAGTGCCCAAACTCATCA 59.230 50.000 0.00 0.00 0.00 3.07
1751 9557 2.280797 GCTTGCGGTGTGAGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
1888 9694 1.004440 GGCATCCTCGCACCCTATC 60.004 63.158 0.00 0.00 0.00 2.08
2203 10023 2.123428 GGGTAGAAGCCGGCGTCTA 61.123 63.158 37.87 37.87 36.31 2.59
2248 10080 1.741401 CAGAACTCCGCGAATGGCA 60.741 57.895 8.23 0.00 43.84 4.92
2280 10112 2.049802 GACGTCGAAGCCGTCCAA 60.050 61.111 14.20 0.00 37.98 3.53
2374 10206 3.371097 AAGATCATGCCGACGCCGT 62.371 57.895 0.00 0.00 0.00 5.68
2396 10228 1.228337 CCCTCGGGAAAACGGGTTT 60.228 57.895 0.00 0.00 37.50 3.27
2435 10267 2.356673 GACGCCGGGAGAACGTTT 60.357 61.111 2.18 0.00 41.33 3.60
2516 10348 0.937304 CCCTGAAACCGATATGCACG 59.063 55.000 0.00 0.00 0.00 5.34
2518 10350 0.916086 ACCCCTGAAACCGATATGCA 59.084 50.000 0.00 0.00 0.00 3.96
2528 10360 2.173519 CCGAGTACTGTACCCCTGAAA 58.826 52.381 14.05 0.00 0.00 2.69
2603 10437 3.883744 CTTCAGAACGCCCGTGCCT 62.884 63.158 0.00 0.00 0.00 4.75
2720 13307 1.153369 CATGGACGTGCCGGAGATT 60.153 57.895 5.05 0.00 40.66 2.40
2852 13439 1.621317 TCGTTGAGTATTGGACTGCCA 59.379 47.619 0.00 0.00 44.17 4.92
3057 13644 2.107750 CAGGCGGTCGCTGATCAT 59.892 61.111 15.04 0.00 41.60 2.45
3109 13699 1.218316 GCCGTCGAATTCCAGGACT 59.782 57.895 11.36 0.00 0.00 3.85
3179 13793 1.302366 TGTCGATCACCGCGTAGTAT 58.698 50.000 4.92 0.00 38.37 2.12
3190 13804 0.030773 GCTACTCGGCATGTCGATCA 59.969 55.000 24.45 12.77 38.55 2.92
3292 13906 1.071987 CTTGCACCACTCTGCCTCA 59.928 57.895 0.00 0.00 36.21 3.86
3423 14037 6.143438 CGTGAAAGACATAAACGTACTTGAGT 59.857 38.462 0.00 0.00 0.00 3.41
3448 14254 5.043248 ACAAACTAACAATGAGCAAGTTGC 58.957 37.500 20.44 20.44 45.46 4.17
3556 14371 3.752747 TCAAAGATGAATGTGTGCATCGT 59.247 39.130 0.00 0.00 44.23 3.73
3799 15742 9.190317 TCAGAGCATAAGTATAACGATATCCAT 57.810 33.333 0.00 0.00 0.00 3.41
3809 15752 7.847096 TGACCAAGTTCAGAGCATAAGTATAA 58.153 34.615 0.00 0.00 0.00 0.98
3911 15857 1.342474 ACACTCCATCATCTCCCTCGT 60.342 52.381 0.00 0.00 0.00 4.18
3912 15858 1.407936 ACACTCCATCATCTCCCTCG 58.592 55.000 0.00 0.00 0.00 4.63
3941 15889 7.206687 CCACCAAAACACGGCATTATAAATAT 58.793 34.615 0.00 0.00 0.00 1.28
4038 15990 5.371526 AGCAGCAATATAGTACATGCAACT 58.628 37.500 6.55 6.55 41.18 3.16
4057 16012 5.164012 GCGCTAACATGTGATATTAGAGCAG 60.164 44.000 19.22 8.39 45.48 4.24
4077 16032 1.160137 CACTAGGCAAAAGAAGCGCT 58.840 50.000 2.64 2.64 0.00 5.92
4151 16109 8.465999 TGGCTGTTTCATGTATTTATTTGGTAG 58.534 33.333 0.00 0.00 0.00 3.18
4234 16192 3.286751 TGGCTGTGCGCAAGGTTC 61.287 61.111 14.00 0.00 41.67 3.62
4287 16248 4.082523 GCTCGTGCAGGGTGGCTA 62.083 66.667 6.56 0.00 39.41 3.93
4322 16283 2.671963 GGTTGCGACAACTCCCCC 60.672 66.667 17.89 2.78 0.00 5.40
4328 16289 1.282875 GCAAGAGGGTTGCGACAAC 59.717 57.895 6.39 12.44 35.58 3.32
4373 16334 4.920112 TGTTGGTCGTGGTGGCGG 62.920 66.667 0.00 0.00 0.00 6.13
4374 16335 2.258013 AATGTTGGTCGTGGTGGCG 61.258 57.895 0.00 0.00 0.00 5.69
4375 16336 1.285641 CAATGTTGGTCGTGGTGGC 59.714 57.895 0.00 0.00 0.00 5.01
4376 16337 1.956043 CCAATGTTGGTCGTGGTGG 59.044 57.895 3.58 0.00 43.43 4.61
4414 16375 0.941963 TAGCCCCTACTCCCTGACAT 59.058 55.000 0.00 0.00 0.00 3.06
4416 16377 1.116536 GCTAGCCCCTACTCCCTGAC 61.117 65.000 2.29 0.00 0.00 3.51
4419 16380 2.198980 CGCTAGCCCCTACTCCCT 59.801 66.667 9.66 0.00 0.00 4.20
4421 16382 3.617735 GCCGCTAGCCCCTACTCC 61.618 72.222 9.66 0.00 34.35 3.85
4436 16397 3.680786 GAACCAAACCCTGCCGCC 61.681 66.667 0.00 0.00 0.00 6.13
4468 16429 2.281208 CCTCGTTTCGCAACCCCA 60.281 61.111 0.00 0.00 0.00 4.96
4470 16431 2.453379 TACCCCTCGTTTCGCAACCC 62.453 60.000 0.00 0.00 0.00 4.11
4476 16437 0.174162 AATCGGTACCCCTCGTTTCG 59.826 55.000 6.25 0.00 0.00 3.46
4479 16440 1.811860 CGAATCGGTACCCCTCGTT 59.188 57.895 6.25 0.00 0.00 3.85
4484 16445 0.106149 ATTCTGCGAATCGGTACCCC 59.894 55.000 6.25 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.