Multiple sequence alignment - TraesCS2D01G405900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G405900 chr2D 100.000 2407 0 0 1 2407 521222815 521220409 0.000000e+00 4446
1 TraesCS2D01G405900 chr2D 97.459 2204 52 1 4 2203 644703261 644701058 0.000000e+00 3757
2 TraesCS2D01G405900 chr5B 97.636 2200 52 0 4 2203 130614898 130612699 0.000000e+00 3775
3 TraesCS2D01G405900 chr5B 97.409 2200 56 1 4 2203 130609874 130607676 0.000000e+00 3746
4 TraesCS2D01G405900 chr5B 97.010 2207 62 1 1 2203 130568755 130570961 0.000000e+00 3707
5 TraesCS2D01G405900 chrUn 97.591 2200 52 1 4 2203 45100789 45098591 0.000000e+00 3768
6 TraesCS2D01G405900 chrUn 97.370 2205 56 1 1 2203 261513064 261515268 0.000000e+00 3749
7 TraesCS2D01G405900 chrUn 98.675 151 2 0 2257 2407 108516421 108516271 3.940000e-68 268
8 TraesCS2D01G405900 chr3A 97.278 2204 58 2 1 2203 66030313 66032515 0.000000e+00 3736
9 TraesCS2D01G405900 chr7B 97.142 2204 62 1 1 2203 743033700 743035903 0.000000e+00 3720
10 TraesCS2D01G405900 chr2B 97.092 2201 61 3 4 2203 112869110 112866912 0.000000e+00 3707
11 TraesCS2D01G405900 chr3D 99.338 151 1 0 2257 2407 441109598 441109748 8.480000e-70 274
12 TraesCS2D01G405900 chr1D 98.684 152 2 0 2256 2407 67583920 67584071 1.100000e-68 270
13 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 84543113 84543263 3.940000e-68 268
14 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 91802411 91802261 3.940000e-68 268
15 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 160160203 160160353 3.940000e-68 268
16 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 171032531 171032381 3.940000e-68 268
17 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 171044735 171044585 3.940000e-68 268
18 TraesCS2D01G405900 chr6D 98.675 151 2 0 2257 2407 182259133 182258983 3.940000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G405900 chr2D 521220409 521222815 2406 True 4446.0 4446 100.0000 1 2407 1 chr2D.!!$R1 2406
1 TraesCS2D01G405900 chr2D 644701058 644703261 2203 True 3757.0 3757 97.4590 4 2203 1 chr2D.!!$R2 2199
2 TraesCS2D01G405900 chr5B 130607676 130614898 7222 True 3760.5 3775 97.5225 4 2203 2 chr5B.!!$R1 2199
3 TraesCS2D01G405900 chr5B 130568755 130570961 2206 False 3707.0 3707 97.0100 1 2203 1 chr5B.!!$F1 2202
4 TraesCS2D01G405900 chrUn 45098591 45100789 2198 True 3768.0 3768 97.5910 4 2203 1 chrUn.!!$R1 2199
5 TraesCS2D01G405900 chrUn 261513064 261515268 2204 False 3749.0 3749 97.3700 1 2203 1 chrUn.!!$F1 2202
6 TraesCS2D01G405900 chr3A 66030313 66032515 2202 False 3736.0 3736 97.2780 1 2203 1 chr3A.!!$F1 2202
7 TraesCS2D01G405900 chr7B 743033700 743035903 2203 False 3720.0 3720 97.1420 1 2203 1 chr7B.!!$F1 2202
8 TraesCS2D01G405900 chr2B 112866912 112869110 2198 True 3707.0 3707 97.0920 4 2203 1 chr2B.!!$R1 2199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 973 0.388649 CTTGCGTGAACTAGCGGACT 60.389 55.0 0.0 0.0 35.87 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 7335 1.867233 CCAAGTCTTCAAGGTCACACG 59.133 52.381 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.167693 TCGGCTCCGATAACACAATTCT 59.832 45.455 6.95 0.00 44.01 2.40
109 110 1.139498 TTGGGCACTGGATCCCTTCA 61.139 55.000 9.90 0.00 43.04 3.02
114 115 1.279496 CACTGGATCCCTTCAGACCA 58.721 55.000 9.90 0.00 35.20 4.02
130 131 1.000955 GACCAGGAGAACGTGTGACAT 59.999 52.381 0.00 0.00 0.00 3.06
172 173 3.139077 CAACAGGTCGCTCCTTTAGTTT 58.861 45.455 0.00 0.00 45.67 2.66
198 199 2.503382 GGGCCCCTTTTTCGTTGCA 61.503 57.895 12.23 0.00 0.00 4.08
248 249 1.700186 GGGATTTCGCTCTATTCCCCT 59.300 52.381 0.00 0.00 40.20 4.79
261 262 6.240549 TCTATTCCCCTCAATCTTCACTTC 57.759 41.667 0.00 0.00 0.00 3.01
283 284 3.733960 CACGCCGACTCTCCGTCA 61.734 66.667 0.00 0.00 42.98 4.35
333 334 1.075525 CATAGGACCCCGTCTCCCA 60.076 63.158 0.00 0.00 32.47 4.37
418 419 6.880484 TCGATTGCCCTAGAATTACAACTAA 58.120 36.000 0.00 0.00 0.00 2.24
500 501 4.510340 GTCGCACCCGAACAATTATATTCT 59.490 41.667 0.00 0.00 46.34 2.40
547 548 2.668185 TTTTGAGCCGGCTTCCGTGA 62.668 55.000 33.34 12.19 46.80 4.35
554 555 1.604438 GCCGGCTTCCGTGAAAAATTT 60.604 47.619 22.15 0.00 46.80 1.82
625 626 7.678947 ATCTCAATAGCTAAATACATGGCAC 57.321 36.000 0.00 0.00 0.00 5.01
645 646 4.520492 GCACTTAAATCATGATCCGGGATT 59.480 41.667 11.57 0.00 32.90 3.01
907 908 4.263572 CCCGGCCAGAACCACACA 62.264 66.667 2.24 0.00 0.00 3.72
953 954 3.498927 TCCGTGATAACTTCTTCGGAC 57.501 47.619 0.00 0.00 42.17 4.79
972 973 0.388649 CTTGCGTGAACTAGCGGACT 60.389 55.000 0.00 0.00 35.87 3.85
1046 1047 1.451936 GAATGGGCGCCACTATCCT 59.548 57.895 30.85 5.11 35.80 3.24
1061 1062 2.393710 ATCCTAGCCCGGATCCAGCT 62.394 60.000 25.14 25.14 39.60 4.24
1103 1104 4.407365 CCCTTCCCAACAGTTGTATCTTT 58.593 43.478 12.42 0.00 0.00 2.52
1198 1199 0.690762 CTTTCCTCCCGTCCCTTCAA 59.309 55.000 0.00 0.00 0.00 2.69
1220 1221 4.537965 AGCATGAAGATCGTCGTATGTAC 58.462 43.478 2.89 0.00 0.00 2.90
1382 1390 1.133976 GTGATCCCTAGGTTGCAGCAT 60.134 52.381 8.29 0.00 0.00 3.79
1545 1553 0.407139 ATTTCCCTTGCTCCTGCTGT 59.593 50.000 0.00 0.00 40.48 4.40
1549 1557 0.254178 CCCTTGCTCCTGCTGTGTAT 59.746 55.000 0.00 0.00 40.48 2.29
1565 1573 1.488812 TGTATGATTAGCCGGCCTTGT 59.511 47.619 26.15 7.06 0.00 3.16
1785 1793 6.839124 ACAACTCCATGAATGAGCAAAATA 57.161 33.333 0.00 0.00 0.00 1.40
1787 1795 7.844009 ACAACTCCATGAATGAGCAAAATAAT 58.156 30.769 0.00 0.00 0.00 1.28
1813 1821 7.224753 TGGTTGCGTTAATGATAAAGATCTCTC 59.775 37.037 0.00 0.00 32.79 3.20
1885 1893 7.079451 ACTTCTTCTACTTTCATTTCCTCCA 57.921 36.000 0.00 0.00 0.00 3.86
2100 7131 1.800586 CTTCACACCCACACAATCTCG 59.199 52.381 0.00 0.00 0.00 4.04
2222 7253 7.826690 ACTTGTCCATATGTTTGTTATTGTCC 58.173 34.615 1.24 0.00 0.00 4.02
2223 7254 7.669722 ACTTGTCCATATGTTTGTTATTGTCCT 59.330 33.333 1.24 0.00 0.00 3.85
2224 7255 8.415950 TTGTCCATATGTTTGTTATTGTCCTT 57.584 30.769 1.24 0.00 0.00 3.36
2225 7256 7.825681 TGTCCATATGTTTGTTATTGTCCTTG 58.174 34.615 1.24 0.00 0.00 3.61
2226 7257 7.450014 TGTCCATATGTTTGTTATTGTCCTTGT 59.550 33.333 1.24 0.00 0.00 3.16
2227 7258 8.952278 GTCCATATGTTTGTTATTGTCCTTGTA 58.048 33.333 1.24 0.00 0.00 2.41
2228 7259 9.693739 TCCATATGTTTGTTATTGTCCTTGTAT 57.306 29.630 1.24 0.00 0.00 2.29
2229 7260 9.734620 CCATATGTTTGTTATTGTCCTTGTATG 57.265 33.333 1.24 0.00 0.00 2.39
2237 7268 9.559732 TTGTTATTGTCCTTGTATGATATCTGG 57.440 33.333 3.98 0.00 0.00 3.86
2238 7269 8.713971 TGTTATTGTCCTTGTATGATATCTGGT 58.286 33.333 3.98 0.00 0.00 4.00
2239 7270 9.561069 GTTATTGTCCTTGTATGATATCTGGTT 57.439 33.333 3.98 0.00 0.00 3.67
2242 7273 8.506168 TTGTCCTTGTATGATATCTGGTTTTC 57.494 34.615 3.98 0.00 0.00 2.29
2243 7274 7.861629 TGTCCTTGTATGATATCTGGTTTTCT 58.138 34.615 3.98 0.00 0.00 2.52
2244 7275 7.770433 TGTCCTTGTATGATATCTGGTTTTCTG 59.230 37.037 3.98 0.00 0.00 3.02
2245 7276 7.770897 GTCCTTGTATGATATCTGGTTTTCTGT 59.229 37.037 3.98 0.00 0.00 3.41
2246 7277 7.770433 TCCTTGTATGATATCTGGTTTTCTGTG 59.230 37.037 3.98 0.00 0.00 3.66
2247 7278 7.554118 CCTTGTATGATATCTGGTTTTCTGTGT 59.446 37.037 3.98 0.00 0.00 3.72
2248 7279 7.848223 TGTATGATATCTGGTTTTCTGTGTG 57.152 36.000 3.98 0.00 0.00 3.82
2249 7280 6.823182 TGTATGATATCTGGTTTTCTGTGTGG 59.177 38.462 3.98 0.00 0.00 4.17
2250 7281 5.241403 TGATATCTGGTTTTCTGTGTGGT 57.759 39.130 3.98 0.00 0.00 4.16
2251 7282 5.630121 TGATATCTGGTTTTCTGTGTGGTT 58.370 37.500 3.98 0.00 0.00 3.67
2252 7283 6.068010 TGATATCTGGTTTTCTGTGTGGTTT 58.932 36.000 3.98 0.00 0.00 3.27
2253 7284 6.549364 TGATATCTGGTTTTCTGTGTGGTTTT 59.451 34.615 3.98 0.00 0.00 2.43
2254 7285 5.675684 ATCTGGTTTTCTGTGTGGTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
2279 7310 8.980481 TTACTTTGGATTTCTGAAGACTTTCT 57.020 30.769 0.00 0.00 34.31 2.52
2280 7311 7.269477 ACTTTGGATTTCTGAAGACTTTCTG 57.731 36.000 0.00 0.00 34.31 3.02
2281 7312 7.056635 ACTTTGGATTTCTGAAGACTTTCTGA 58.943 34.615 0.00 0.00 38.86 3.27
2282 7313 7.557719 ACTTTGGATTTCTGAAGACTTTCTGAA 59.442 33.333 5.77 5.77 44.47 3.02
2283 7314 7.502120 TTGGATTTCTGAAGACTTTCTGAAG 57.498 36.000 8.78 0.00 45.73 3.02
2284 7315 6.830912 TGGATTTCTGAAGACTTTCTGAAGA 58.169 36.000 8.78 3.62 45.73 2.87
2285 7316 6.708054 TGGATTTCTGAAGACTTTCTGAAGAC 59.292 38.462 8.78 7.64 45.73 3.01
2286 7317 6.934083 GGATTTCTGAAGACTTTCTGAAGACT 59.066 38.462 8.78 0.00 45.73 3.24
2287 7318 7.443879 GGATTTCTGAAGACTTTCTGAAGACTT 59.556 37.037 4.11 4.11 45.73 3.01
2288 7319 8.744568 ATTTCTGAAGACTTTCTGAAGACTTT 57.255 30.769 5.61 0.00 45.73 2.66
2289 7320 7.545362 TTCTGAAGACTTTCTGAAGACTTTG 57.455 36.000 5.61 3.59 44.18 2.77
2290 7321 6.878317 TCTGAAGACTTTCTGAAGACTTTGA 58.122 36.000 5.61 5.29 44.18 2.69
2291 7322 7.331026 TCTGAAGACTTTCTGAAGACTTTGAA 58.669 34.615 5.61 0.00 44.18 2.69
2292 7323 7.824289 TCTGAAGACTTTCTGAAGACTTTGAAA 59.176 33.333 13.19 13.19 44.18 2.69
2293 7324 7.978982 TGAAGACTTTCTGAAGACTTTGAAAG 58.021 34.615 26.04 26.04 44.18 2.62
2294 7325 6.370433 AGACTTTCTGAAGACTTTGAAAGC 57.630 37.500 26.80 22.11 45.23 3.51
2295 7326 5.007136 AGACTTTCTGAAGACTTTGAAAGCG 59.993 40.000 26.80 15.96 45.23 4.68
2296 7327 4.876107 ACTTTCTGAAGACTTTGAAAGCGA 59.124 37.500 26.80 8.19 45.23 4.93
2297 7328 5.354234 ACTTTCTGAAGACTTTGAAAGCGAA 59.646 36.000 26.80 8.47 45.23 4.70
2298 7329 5.409643 TTCTGAAGACTTTGAAAGCGAAG 57.590 39.130 4.57 0.00 40.68 3.79
2299 7330 4.693283 TCTGAAGACTTTGAAAGCGAAGA 58.307 39.130 4.57 0.00 38.62 2.87
2300 7331 5.116180 TCTGAAGACTTTGAAAGCGAAGAA 58.884 37.500 4.57 0.00 38.62 2.52
2301 7332 5.584649 TCTGAAGACTTTGAAAGCGAAGAAA 59.415 36.000 4.57 0.00 38.62 2.52
2302 7333 6.260936 TCTGAAGACTTTGAAAGCGAAGAAAT 59.739 34.615 4.57 0.00 38.62 2.17
2303 7334 6.795399 TGAAGACTTTGAAAGCGAAGAAATT 58.205 32.000 4.57 0.00 38.62 1.82
2304 7335 6.912591 TGAAGACTTTGAAAGCGAAGAAATTC 59.087 34.615 4.57 0.00 38.62 2.17
2305 7336 5.444122 AGACTTTGAAAGCGAAGAAATTCG 58.556 37.500 4.57 6.04 46.34 3.34
2306 7337 5.007724 AGACTTTGAAAGCGAAGAAATTCGT 59.992 36.000 4.57 0.00 45.45 3.85
2307 7338 4.970003 ACTTTGAAAGCGAAGAAATTCGTG 59.030 37.500 4.57 0.00 45.45 4.35
2308 7339 4.545823 TTGAAAGCGAAGAAATTCGTGT 57.454 36.364 11.52 0.00 45.45 4.49
2309 7340 3.872354 TGAAAGCGAAGAAATTCGTGTG 58.128 40.909 11.52 0.00 45.45 3.82
2310 7341 3.558006 TGAAAGCGAAGAAATTCGTGTGA 59.442 39.130 11.52 0.00 45.45 3.58
2311 7342 3.521524 AAGCGAAGAAATTCGTGTGAC 57.478 42.857 11.52 0.00 45.45 3.67
2312 7343 1.798813 AGCGAAGAAATTCGTGTGACC 59.201 47.619 11.52 0.00 45.45 4.02
2313 7344 1.798813 GCGAAGAAATTCGTGTGACCT 59.201 47.619 11.52 0.00 45.45 3.85
2314 7345 2.223377 GCGAAGAAATTCGTGTGACCTT 59.777 45.455 11.52 0.00 45.45 3.50
2315 7346 3.799035 CGAAGAAATTCGTGTGACCTTG 58.201 45.455 2.35 0.00 39.41 3.61
2316 7347 3.493129 CGAAGAAATTCGTGTGACCTTGA 59.507 43.478 2.35 0.00 39.41 3.02
2317 7348 4.025229 CGAAGAAATTCGTGTGACCTTGAA 60.025 41.667 2.35 0.00 39.41 2.69
2318 7349 5.424121 AAGAAATTCGTGTGACCTTGAAG 57.576 39.130 0.00 0.00 0.00 3.02
2319 7350 4.703897 AGAAATTCGTGTGACCTTGAAGA 58.296 39.130 0.00 0.00 0.00 2.87
2320 7351 4.511826 AGAAATTCGTGTGACCTTGAAGAC 59.488 41.667 0.00 0.00 0.00 3.01
2321 7352 3.753294 ATTCGTGTGACCTTGAAGACT 57.247 42.857 0.00 0.00 0.00 3.24
2322 7353 3.536956 TTCGTGTGACCTTGAAGACTT 57.463 42.857 0.00 0.00 0.00 3.01
2323 7354 2.821546 TCGTGTGACCTTGAAGACTTG 58.178 47.619 0.00 0.00 0.00 3.16
2324 7355 1.867233 CGTGTGACCTTGAAGACTTGG 59.133 52.381 0.00 0.00 0.00 3.61
2325 7356 2.741878 CGTGTGACCTTGAAGACTTGGT 60.742 50.000 0.00 0.00 35.23 3.67
2326 7357 3.491964 CGTGTGACCTTGAAGACTTGGTA 60.492 47.826 0.00 0.00 32.30 3.25
2327 7358 4.642429 GTGTGACCTTGAAGACTTGGTAT 58.358 43.478 0.00 0.00 32.30 2.73
2328 7359 5.063880 GTGTGACCTTGAAGACTTGGTATT 58.936 41.667 0.00 0.00 32.30 1.89
2329 7360 5.179555 GTGTGACCTTGAAGACTTGGTATTC 59.820 44.000 0.00 0.00 34.78 1.75
2330 7361 5.163248 TGTGACCTTGAAGACTTGGTATTCA 60.163 40.000 4.00 4.00 41.12 2.57
2331 7362 5.940470 GTGACCTTGAAGACTTGGTATTCAT 59.060 40.000 8.25 0.00 42.11 2.57
2332 7363 6.431234 GTGACCTTGAAGACTTGGTATTCATT 59.569 38.462 8.25 0.00 42.11 2.57
2333 7364 7.004086 TGACCTTGAAGACTTGGTATTCATTT 58.996 34.615 8.25 0.00 42.11 2.32
2334 7365 7.040478 TGACCTTGAAGACTTGGTATTCATTTG 60.040 37.037 8.25 4.01 42.11 2.32
2335 7366 7.004086 ACCTTGAAGACTTGGTATTCATTTGA 58.996 34.615 8.25 0.00 42.11 2.69
2336 7367 7.175641 ACCTTGAAGACTTGGTATTCATTTGAG 59.824 37.037 8.25 3.92 42.11 3.02
2337 7368 7.362401 CCTTGAAGACTTGGTATTCATTTGAGG 60.362 40.741 8.25 8.24 42.11 3.86
2338 7369 6.778821 TGAAGACTTGGTATTCATTTGAGGA 58.221 36.000 4.00 0.00 38.56 3.71
2339 7370 7.230747 TGAAGACTTGGTATTCATTTGAGGAA 58.769 34.615 4.00 0.00 38.56 3.36
2340 7371 7.174946 TGAAGACTTGGTATTCATTTGAGGAAC 59.825 37.037 4.00 0.00 38.56 3.62
2341 7372 6.542821 AGACTTGGTATTCATTTGAGGAACA 58.457 36.000 0.00 0.00 0.00 3.18
2342 7373 7.177878 AGACTTGGTATTCATTTGAGGAACAT 58.822 34.615 0.00 0.00 0.00 2.71
2343 7374 7.121759 AGACTTGGTATTCATTTGAGGAACATG 59.878 37.037 0.00 0.00 0.00 3.21
2344 7375 6.947733 ACTTGGTATTCATTTGAGGAACATGA 59.052 34.615 0.00 0.00 0.00 3.07
2345 7376 7.451255 ACTTGGTATTCATTTGAGGAACATGAA 59.549 33.333 0.00 0.00 33.78 2.57
2346 7377 7.395190 TGGTATTCATTTGAGGAACATGAAG 57.605 36.000 0.00 0.00 33.10 3.02
2347 7378 6.127647 TGGTATTCATTTGAGGAACATGAAGC 60.128 38.462 0.00 0.00 33.10 3.86
2348 7379 4.424061 TTCATTTGAGGAACATGAAGCG 57.576 40.909 0.00 0.00 0.00 4.68
2349 7380 3.411446 TCATTTGAGGAACATGAAGCGT 58.589 40.909 0.00 0.00 0.00 5.07
2350 7381 3.189080 TCATTTGAGGAACATGAAGCGTG 59.811 43.478 0.00 0.00 0.00 5.34
2351 7382 2.542020 TTGAGGAACATGAAGCGTGA 57.458 45.000 0.00 0.00 0.00 4.35
2352 7383 2.542020 TGAGGAACATGAAGCGTGAA 57.458 45.000 0.00 0.00 0.00 3.18
2353 7384 2.416747 TGAGGAACATGAAGCGTGAAG 58.583 47.619 0.00 0.00 0.00 3.02
2354 7385 2.037121 TGAGGAACATGAAGCGTGAAGA 59.963 45.455 0.00 0.00 0.00 2.87
2355 7386 2.413453 GAGGAACATGAAGCGTGAAGAC 59.587 50.000 0.00 0.00 0.00 3.01
2356 7387 2.037772 AGGAACATGAAGCGTGAAGACT 59.962 45.455 0.00 0.00 0.00 3.24
2357 7388 2.808543 GGAACATGAAGCGTGAAGACTT 59.191 45.455 0.00 0.00 0.00 3.01
2358 7389 3.251004 GGAACATGAAGCGTGAAGACTTT 59.749 43.478 0.00 0.00 0.00 2.66
2359 7390 4.261197 GGAACATGAAGCGTGAAGACTTTT 60.261 41.667 0.00 0.00 0.00 2.27
2360 7391 4.214980 ACATGAAGCGTGAAGACTTTTG 57.785 40.909 0.00 0.00 0.00 2.44
2361 7392 3.627577 ACATGAAGCGTGAAGACTTTTGT 59.372 39.130 0.00 0.00 0.00 2.83
2362 7393 4.096382 ACATGAAGCGTGAAGACTTTTGTT 59.904 37.500 0.00 0.00 0.00 2.83
2363 7394 4.695217 TGAAGCGTGAAGACTTTTGTTT 57.305 36.364 0.00 0.00 0.00 2.83
2364 7395 5.054390 TGAAGCGTGAAGACTTTTGTTTT 57.946 34.783 0.00 0.00 0.00 2.43
2365 7396 5.092781 TGAAGCGTGAAGACTTTTGTTTTC 58.907 37.500 0.00 0.00 42.02 2.29
2366 7397 3.680789 AGCGTGAAGACTTTTGTTTTCG 58.319 40.909 0.00 0.00 43.85 3.46
2367 7398 3.126343 AGCGTGAAGACTTTTGTTTTCGT 59.874 39.130 0.00 0.00 43.85 3.85
2368 7399 4.330620 AGCGTGAAGACTTTTGTTTTCGTA 59.669 37.500 0.00 0.00 43.85 3.43
2369 7400 4.664851 GCGTGAAGACTTTTGTTTTCGTAG 59.335 41.667 0.00 0.00 43.85 3.51
2370 7401 5.725864 GCGTGAAGACTTTTGTTTTCGTAGT 60.726 40.000 0.00 0.00 43.85 2.73
2371 7402 6.245724 CGTGAAGACTTTTGTTTTCGTAGTT 58.754 36.000 0.00 0.00 43.85 2.24
2372 7403 6.739550 CGTGAAGACTTTTGTTTTCGTAGTTT 59.260 34.615 0.00 0.00 43.85 2.66
2373 7404 7.045804 CGTGAAGACTTTTGTTTTCGTAGTTTC 60.046 37.037 0.00 0.00 43.85 2.78
2374 7405 7.747357 GTGAAGACTTTTGTTTTCGTAGTTTCA 59.253 33.333 0.00 0.00 43.85 2.69
2375 7406 8.455682 TGAAGACTTTTGTTTTCGTAGTTTCAT 58.544 29.630 0.00 0.00 43.85 2.57
2376 7407 9.285770 GAAGACTTTTGTTTTCGTAGTTTCATT 57.714 29.630 0.00 0.00 34.56 2.57
2377 7408 9.634163 AAGACTTTTGTTTTCGTAGTTTCATTT 57.366 25.926 0.00 0.00 0.00 2.32
2378 7409 9.634163 AGACTTTTGTTTTCGTAGTTTCATTTT 57.366 25.926 0.00 0.00 0.00 1.82
2379 7410 9.881414 GACTTTTGTTTTCGTAGTTTCATTTTC 57.119 29.630 0.00 0.00 0.00 2.29
2380 7411 9.634163 ACTTTTGTTTTCGTAGTTTCATTTTCT 57.366 25.926 0.00 0.00 0.00 2.52
2382 7413 9.849166 TTTTGTTTTCGTAGTTTCATTTTCTCT 57.151 25.926 0.00 0.00 0.00 3.10
2383 7414 9.849166 TTTGTTTTCGTAGTTTCATTTTCTCTT 57.151 25.926 0.00 0.00 0.00 2.85
2384 7415 9.849166 TTGTTTTCGTAGTTTCATTTTCTCTTT 57.151 25.926 0.00 0.00 0.00 2.52
2385 7416 9.498307 TGTTTTCGTAGTTTCATTTTCTCTTTC 57.502 29.630 0.00 0.00 0.00 2.62
2386 7417 9.717892 GTTTTCGTAGTTTCATTTTCTCTTTCT 57.282 29.630 0.00 0.00 0.00 2.52
2388 7419 9.716507 TTTCGTAGTTTCATTTTCTCTTTCTTG 57.283 29.630 0.00 0.00 0.00 3.02
2389 7420 8.657074 TCGTAGTTTCATTTTCTCTTTCTTGA 57.343 30.769 0.00 0.00 0.00 3.02
2390 7421 8.765219 TCGTAGTTTCATTTTCTCTTTCTTGAG 58.235 33.333 0.00 0.00 35.52 3.02
2391 7422 8.552034 CGTAGTTTCATTTTCTCTTTCTTGAGT 58.448 33.333 0.00 0.00 35.68 3.41
2392 7423 9.871299 GTAGTTTCATTTTCTCTTTCTTGAGTC 57.129 33.333 0.00 0.00 35.68 3.36
2393 7424 8.511604 AGTTTCATTTTCTCTTTCTTGAGTCA 57.488 30.769 0.00 0.00 35.68 3.41
2394 7425 9.129532 AGTTTCATTTTCTCTTTCTTGAGTCAT 57.870 29.630 0.00 0.00 35.68 3.06
2397 7428 8.783833 TCATTTTCTCTTTCTTGAGTCATAGG 57.216 34.615 0.00 0.00 35.68 2.57
2398 7429 8.597167 TCATTTTCTCTTTCTTGAGTCATAGGA 58.403 33.333 0.00 0.00 35.68 2.94
2399 7430 9.224267 CATTTTCTCTTTCTTGAGTCATAGGAA 57.776 33.333 0.00 0.00 35.68 3.36
2400 7431 9.799106 ATTTTCTCTTTCTTGAGTCATAGGAAA 57.201 29.630 12.58 12.58 35.68 3.13
2401 7432 8.608844 TTTCTCTTTCTTGAGTCATAGGAAAC 57.391 34.615 0.00 0.00 35.68 2.78
2402 7433 7.303182 TCTCTTTCTTGAGTCATAGGAAACA 57.697 36.000 0.00 0.00 35.68 2.83
2403 7434 7.155328 TCTCTTTCTTGAGTCATAGGAAACAC 58.845 38.462 0.00 0.00 35.68 3.32
2404 7435 6.231211 TCTTTCTTGAGTCATAGGAAACACC 58.769 40.000 0.00 0.00 39.35 4.16
2405 7436 4.188247 TCTTGAGTCATAGGAAACACCG 57.812 45.455 0.00 0.00 44.74 4.94
2406 7437 3.576982 TCTTGAGTCATAGGAAACACCGT 59.423 43.478 0.00 0.00 44.74 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.006537 CCACTTTTCACCGGTTAGAGAGA 59.993 47.826 2.97 0.00 0.00 3.10
67 68 0.905357 CCGACTCCTCCCAGAATTGT 59.095 55.000 0.00 0.00 0.00 2.71
74 75 0.613853 CCAACTACCGACTCCTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
109 110 0.674534 GTCACACGTTCTCCTGGTCT 59.325 55.000 0.00 0.00 0.00 3.85
114 115 1.270839 CCCAATGTCACACGTTCTCCT 60.271 52.381 0.00 0.00 0.00 3.69
130 131 1.934459 TTCACCAAACCCCGACCCAA 61.934 55.000 0.00 0.00 0.00 4.12
172 173 2.420408 CGAAAAAGGGGCCCGATACTTA 60.420 50.000 18.95 0.00 0.00 2.24
248 249 2.143122 GTGGCGTGAAGTGAAGATTGA 58.857 47.619 0.00 0.00 0.00 2.57
333 334 4.155462 TCCTACGCGCGAAAGATAAGATAT 59.845 41.667 39.36 11.77 0.00 1.63
493 494 8.736097 TTAGGTGCATTTCCCTCTAGAATATA 57.264 34.615 0.00 0.00 32.08 0.86
500 501 4.968719 TGATCTTAGGTGCATTTCCCTCTA 59.031 41.667 0.00 0.00 32.08 2.43
554 555 4.754618 TCGCAGCATCAAAAAGAAAGTCTA 59.245 37.500 0.00 0.00 0.00 2.59
602 603 6.830912 AGTGCCATGTATTTAGCTATTGAGA 58.169 36.000 0.00 0.00 0.00 3.27
637 638 6.037786 CAGTATGCTCTTAATAATCCCGGA 57.962 41.667 0.73 0.00 0.00 5.14
693 694 5.277974 CGAAAAAGAGAGGTTTGATGCTTCA 60.278 40.000 0.00 0.00 0.00 3.02
725 726 4.390264 TGGTACCATTTCGATGTGTTTCA 58.610 39.130 11.60 0.00 0.00 2.69
1046 1047 1.228894 CCTAGCTGGATCCGGGCTA 60.229 63.158 26.85 26.85 38.35 3.93
1061 1062 5.476983 AGGGGACATGATCAATAGAACCTA 58.523 41.667 0.00 0.00 0.00 3.08
1103 1104 1.953686 CAAAGAAAGACGCCCCAAGAA 59.046 47.619 0.00 0.00 0.00 2.52
1198 1199 3.717400 ACATACGACGATCTTCATGCT 57.283 42.857 0.00 0.00 0.00 3.79
1220 1221 2.851104 GGCAACCGAAGTCGAACG 59.149 61.111 1.43 0.00 43.02 3.95
1346 1354 2.037136 CACCAGGCAGCTCTTTCGG 61.037 63.158 0.00 0.00 0.00 4.30
1382 1390 0.883833 GAGGAGTTAACGACCGGACA 59.116 55.000 9.46 0.00 0.00 4.02
1527 1535 0.538057 CACAGCAGGAGCAAGGGAAA 60.538 55.000 0.00 0.00 45.49 3.13
1545 1553 1.488812 ACAAGGCCGGCTAATCATACA 59.511 47.619 28.56 0.00 0.00 2.29
1549 1557 1.077787 CCACAAGGCCGGCTAATCA 60.078 57.895 28.56 0.00 0.00 2.57
1565 1573 0.329931 TCCTAATCCTTTTGCCGCCA 59.670 50.000 0.00 0.00 0.00 5.69
1785 1793 8.225603 AGATCTTTATCATTAACGCAACCATT 57.774 30.769 0.00 0.00 34.28 3.16
1787 1795 7.047891 AGAGATCTTTATCATTAACGCAACCA 58.952 34.615 0.00 0.00 34.28 3.67
1885 1893 6.599244 TGAATTAACTCTGCGATTTGGAAGAT 59.401 34.615 0.00 0.00 0.00 2.40
2100 7131 7.657336 TGGAAATGGAGTGTTAGTTTCAAATC 58.343 34.615 0.00 0.00 32.04 2.17
2203 7234 9.734620 CATACAAGGACAATAACAAACATATGG 57.265 33.333 7.80 0.00 0.00 2.74
2211 7242 9.559732 CCAGATATCATACAAGGACAATAACAA 57.440 33.333 5.32 0.00 0.00 2.83
2212 7243 8.713971 ACCAGATATCATACAAGGACAATAACA 58.286 33.333 5.32 0.00 0.00 2.41
2213 7244 9.561069 AACCAGATATCATACAAGGACAATAAC 57.439 33.333 5.32 0.00 0.00 1.89
2216 7247 9.125026 GAAAACCAGATATCATACAAGGACAAT 57.875 33.333 5.32 0.00 0.00 2.71
2217 7248 8.328758 AGAAAACCAGATATCATACAAGGACAA 58.671 33.333 5.32 0.00 0.00 3.18
2218 7249 7.770433 CAGAAAACCAGATATCATACAAGGACA 59.230 37.037 5.32 0.00 0.00 4.02
2219 7250 7.770897 ACAGAAAACCAGATATCATACAAGGAC 59.229 37.037 5.32 0.00 0.00 3.85
2220 7251 7.770433 CACAGAAAACCAGATATCATACAAGGA 59.230 37.037 5.32 0.00 0.00 3.36
2221 7252 7.554118 ACACAGAAAACCAGATATCATACAAGG 59.446 37.037 5.32 0.00 0.00 3.61
2222 7253 8.393366 CACACAGAAAACCAGATATCATACAAG 58.607 37.037 5.32 0.00 0.00 3.16
2223 7254 7.336679 CCACACAGAAAACCAGATATCATACAA 59.663 37.037 5.32 0.00 0.00 2.41
2224 7255 6.823182 CCACACAGAAAACCAGATATCATACA 59.177 38.462 5.32 0.00 0.00 2.29
2225 7256 6.823689 ACCACACAGAAAACCAGATATCATAC 59.176 38.462 5.32 0.00 0.00 2.39
2226 7257 6.957631 ACCACACAGAAAACCAGATATCATA 58.042 36.000 5.32 0.00 0.00 2.15
2227 7258 5.819991 ACCACACAGAAAACCAGATATCAT 58.180 37.500 5.32 0.00 0.00 2.45
2228 7259 5.241403 ACCACACAGAAAACCAGATATCA 57.759 39.130 5.32 0.00 0.00 2.15
2229 7260 6.575162 AAACCACACAGAAAACCAGATATC 57.425 37.500 0.00 0.00 0.00 1.63
2230 7261 6.976934 AAAACCACACAGAAAACCAGATAT 57.023 33.333 0.00 0.00 0.00 1.63
2231 7262 6.783708 AAAAACCACACAGAAAACCAGATA 57.216 33.333 0.00 0.00 0.00 1.98
2232 7263 5.675684 AAAAACCACACAGAAAACCAGAT 57.324 34.783 0.00 0.00 0.00 2.90
2253 7284 9.408648 AGAAAGTCTTCAGAAATCCAAAGTAAA 57.591 29.630 0.00 0.00 33.64 2.01
2254 7285 8.840321 CAGAAAGTCTTCAGAAATCCAAAGTAA 58.160 33.333 0.00 0.00 33.64 2.24
2255 7286 8.210946 TCAGAAAGTCTTCAGAAATCCAAAGTA 58.789 33.333 0.00 0.00 33.64 2.24
2256 7287 7.056635 TCAGAAAGTCTTCAGAAATCCAAAGT 58.943 34.615 0.00 0.00 33.64 2.66
2257 7288 7.502120 TCAGAAAGTCTTCAGAAATCCAAAG 57.498 36.000 0.00 0.00 33.64 2.77
2258 7289 7.775093 TCTTCAGAAAGTCTTCAGAAATCCAAA 59.225 33.333 0.00 0.00 36.84 3.28
2259 7290 7.227512 GTCTTCAGAAAGTCTTCAGAAATCCAA 59.772 37.037 0.00 0.00 36.84 3.53
2260 7291 6.708054 GTCTTCAGAAAGTCTTCAGAAATCCA 59.292 38.462 0.00 0.00 36.84 3.41
2261 7292 6.934083 AGTCTTCAGAAAGTCTTCAGAAATCC 59.066 38.462 0.00 0.00 36.84 3.01
2262 7293 7.961325 AGTCTTCAGAAAGTCTTCAGAAATC 57.039 36.000 0.00 0.00 36.84 2.17
2263 7294 8.619546 CAAAGTCTTCAGAAAGTCTTCAGAAAT 58.380 33.333 0.00 0.00 39.11 2.17
2264 7295 7.824289 TCAAAGTCTTCAGAAAGTCTTCAGAAA 59.176 33.333 0.00 0.00 39.11 2.52
2265 7296 7.331026 TCAAAGTCTTCAGAAAGTCTTCAGAA 58.669 34.615 0.00 0.00 39.11 3.02
2266 7297 6.878317 TCAAAGTCTTCAGAAAGTCTTCAGA 58.122 36.000 0.00 0.00 39.11 3.27
2267 7298 7.545362 TTCAAAGTCTTCAGAAAGTCTTCAG 57.455 36.000 0.00 0.00 39.11 3.02
2268 7299 7.414540 GCTTTCAAAGTCTTCAGAAAGTCTTCA 60.415 37.037 25.67 5.03 45.29 3.02
2269 7300 6.909895 GCTTTCAAAGTCTTCAGAAAGTCTTC 59.090 38.462 25.67 14.69 45.29 2.87
2270 7301 6.457528 CGCTTTCAAAGTCTTCAGAAAGTCTT 60.458 38.462 25.67 0.00 45.29 3.01
2271 7302 5.007136 CGCTTTCAAAGTCTTCAGAAAGTCT 59.993 40.000 25.67 0.00 45.29 3.24
2272 7303 5.006746 TCGCTTTCAAAGTCTTCAGAAAGTC 59.993 40.000 25.67 20.30 45.29 3.01
2273 7304 4.876107 TCGCTTTCAAAGTCTTCAGAAAGT 59.124 37.500 25.67 0.00 45.29 2.66
2274 7305 5.409643 TCGCTTTCAAAGTCTTCAGAAAG 57.590 39.130 23.34 23.34 45.92 2.62
2275 7306 5.584649 TCTTCGCTTTCAAAGTCTTCAGAAA 59.415 36.000 0.00 10.83 0.00 2.52
2276 7307 5.116180 TCTTCGCTTTCAAAGTCTTCAGAA 58.884 37.500 0.00 0.00 0.00 3.02
2277 7308 4.693283 TCTTCGCTTTCAAAGTCTTCAGA 58.307 39.130 0.00 0.00 0.00 3.27
2278 7309 5.409643 TTCTTCGCTTTCAAAGTCTTCAG 57.590 39.130 0.00 0.00 0.00 3.02
2279 7310 5.811399 TTTCTTCGCTTTCAAAGTCTTCA 57.189 34.783 0.00 0.00 0.00 3.02
2280 7311 6.085588 CGAATTTCTTCGCTTTCAAAGTCTTC 59.914 38.462 0.00 0.00 46.76 2.87
2281 7312 5.909610 CGAATTTCTTCGCTTTCAAAGTCTT 59.090 36.000 0.00 0.00 46.76 3.01
2282 7313 5.444122 CGAATTTCTTCGCTTTCAAAGTCT 58.556 37.500 0.00 0.00 46.76 3.24
2283 7314 5.715425 CGAATTTCTTCGCTTTCAAAGTC 57.285 39.130 0.00 0.00 46.76 3.01
2295 7326 5.236478 TCTTCAAGGTCACACGAATTTCTTC 59.764 40.000 0.00 0.00 0.00 2.87
2296 7327 5.007724 GTCTTCAAGGTCACACGAATTTCTT 59.992 40.000 0.00 0.00 0.00 2.52
2297 7328 4.511826 GTCTTCAAGGTCACACGAATTTCT 59.488 41.667 0.00 0.00 0.00 2.52
2298 7329 4.511826 AGTCTTCAAGGTCACACGAATTTC 59.488 41.667 0.00 0.00 0.00 2.17
2299 7330 4.451900 AGTCTTCAAGGTCACACGAATTT 58.548 39.130 0.00 0.00 0.00 1.82
2300 7331 4.073293 AGTCTTCAAGGTCACACGAATT 57.927 40.909 0.00 0.00 0.00 2.17
2301 7332 3.753294 AGTCTTCAAGGTCACACGAAT 57.247 42.857 0.00 0.00 0.00 3.34
2302 7333 3.194861 CAAGTCTTCAAGGTCACACGAA 58.805 45.455 0.00 0.00 0.00 3.85
2303 7334 2.483013 CCAAGTCTTCAAGGTCACACGA 60.483 50.000 0.00 0.00 0.00 4.35
2304 7335 1.867233 CCAAGTCTTCAAGGTCACACG 59.133 52.381 0.00 0.00 0.00 4.49
2305 7336 2.919228 ACCAAGTCTTCAAGGTCACAC 58.081 47.619 0.00 0.00 0.00 3.82
2306 7337 4.974645 ATACCAAGTCTTCAAGGTCACA 57.025 40.909 0.00 0.00 35.62 3.58
2307 7338 5.305585 TGAATACCAAGTCTTCAAGGTCAC 58.694 41.667 0.00 0.00 35.62 3.67
2308 7339 5.560722 TGAATACCAAGTCTTCAAGGTCA 57.439 39.130 0.00 0.00 35.62 4.02
2309 7340 7.174946 TCAAATGAATACCAAGTCTTCAAGGTC 59.825 37.037 0.00 0.00 33.61 3.85
2310 7341 7.004086 TCAAATGAATACCAAGTCTTCAAGGT 58.996 34.615 0.49 0.00 33.61 3.50
2311 7342 7.362401 CCTCAAATGAATACCAAGTCTTCAAGG 60.362 40.741 0.49 0.20 33.61 3.61
2312 7343 7.391554 TCCTCAAATGAATACCAAGTCTTCAAG 59.608 37.037 0.49 0.00 33.61 3.02
2313 7344 7.230747 TCCTCAAATGAATACCAAGTCTTCAA 58.769 34.615 0.49 0.00 33.61 2.69
2314 7345 6.778821 TCCTCAAATGAATACCAAGTCTTCA 58.221 36.000 0.00 0.00 34.21 3.02
2315 7346 7.174946 TGTTCCTCAAATGAATACCAAGTCTTC 59.825 37.037 0.00 0.00 0.00 2.87
2316 7347 7.004086 TGTTCCTCAAATGAATACCAAGTCTT 58.996 34.615 0.00 0.00 0.00 3.01
2317 7348 6.542821 TGTTCCTCAAATGAATACCAAGTCT 58.457 36.000 0.00 0.00 0.00 3.24
2318 7349 6.817765 TGTTCCTCAAATGAATACCAAGTC 57.182 37.500 0.00 0.00 0.00 3.01
2319 7350 6.947733 TCATGTTCCTCAAATGAATACCAAGT 59.052 34.615 0.00 0.00 0.00 3.16
2320 7351 7.395190 TCATGTTCCTCAAATGAATACCAAG 57.605 36.000 0.00 0.00 0.00 3.61
2321 7352 7.577426 GCTTCATGTTCCTCAAATGAATACCAA 60.577 37.037 0.00 0.00 39.06 3.67
2322 7353 6.127647 GCTTCATGTTCCTCAAATGAATACCA 60.128 38.462 0.00 0.00 39.06 3.25
2323 7354 6.268566 GCTTCATGTTCCTCAAATGAATACC 58.731 40.000 0.00 0.00 39.06 2.73
2324 7355 5.967674 CGCTTCATGTTCCTCAAATGAATAC 59.032 40.000 0.00 0.00 39.06 1.89
2325 7356 5.647658 ACGCTTCATGTTCCTCAAATGAATA 59.352 36.000 0.00 0.00 39.06 1.75
2326 7357 4.460382 ACGCTTCATGTTCCTCAAATGAAT 59.540 37.500 0.00 0.00 39.06 2.57
2327 7358 3.820467 ACGCTTCATGTTCCTCAAATGAA 59.180 39.130 0.00 0.00 37.84 2.57
2328 7359 3.189080 CACGCTTCATGTTCCTCAAATGA 59.811 43.478 0.00 0.00 0.00 2.57
2329 7360 3.189080 TCACGCTTCATGTTCCTCAAATG 59.811 43.478 0.00 0.00 0.00 2.32
2330 7361 3.411446 TCACGCTTCATGTTCCTCAAAT 58.589 40.909 0.00 0.00 0.00 2.32
2331 7362 2.844946 TCACGCTTCATGTTCCTCAAA 58.155 42.857 0.00 0.00 0.00 2.69
2332 7363 2.542020 TCACGCTTCATGTTCCTCAA 57.458 45.000 0.00 0.00 0.00 3.02
2333 7364 2.037121 TCTTCACGCTTCATGTTCCTCA 59.963 45.455 0.00 0.00 0.00 3.86
2334 7365 2.413453 GTCTTCACGCTTCATGTTCCTC 59.587 50.000 0.00 0.00 0.00 3.71
2335 7366 2.037772 AGTCTTCACGCTTCATGTTCCT 59.962 45.455 0.00 0.00 0.00 3.36
2336 7367 2.417719 AGTCTTCACGCTTCATGTTCC 58.582 47.619 0.00 0.00 0.00 3.62
2337 7368 4.474226 AAAGTCTTCACGCTTCATGTTC 57.526 40.909 0.00 0.00 0.00 3.18
2338 7369 4.096382 ACAAAAGTCTTCACGCTTCATGTT 59.904 37.500 0.00 0.00 0.00 2.71
2339 7370 3.627577 ACAAAAGTCTTCACGCTTCATGT 59.372 39.130 0.00 0.00 0.00 3.21
2340 7371 4.214980 ACAAAAGTCTTCACGCTTCATG 57.785 40.909 0.00 0.00 0.00 3.07
2341 7372 4.900635 AACAAAAGTCTTCACGCTTCAT 57.099 36.364 0.00 0.00 0.00 2.57
2342 7373 4.695217 AAACAAAAGTCTTCACGCTTCA 57.305 36.364 0.00 0.00 0.00 3.02
2343 7374 4.202358 CGAAAACAAAAGTCTTCACGCTTC 59.798 41.667 0.00 0.00 0.00 3.86
2344 7375 4.095610 CGAAAACAAAAGTCTTCACGCTT 58.904 39.130 0.00 0.00 0.00 4.68
2345 7376 3.126343 ACGAAAACAAAAGTCTTCACGCT 59.874 39.130 0.00 0.00 0.00 5.07
2346 7377 3.422655 ACGAAAACAAAAGTCTTCACGC 58.577 40.909 0.00 0.00 0.00 5.34
2347 7378 5.792631 ACTACGAAAACAAAAGTCTTCACG 58.207 37.500 0.00 0.00 0.00 4.35
2348 7379 7.747357 TGAAACTACGAAAACAAAAGTCTTCAC 59.253 33.333 0.00 0.00 0.00 3.18
2349 7380 7.808672 TGAAACTACGAAAACAAAAGTCTTCA 58.191 30.769 0.00 0.00 0.00 3.02
2350 7381 8.836959 ATGAAACTACGAAAACAAAAGTCTTC 57.163 30.769 0.00 0.00 0.00 2.87
2351 7382 9.634163 AAATGAAACTACGAAAACAAAAGTCTT 57.366 25.926 0.00 0.00 0.00 3.01
2352 7383 9.634163 AAAATGAAACTACGAAAACAAAAGTCT 57.366 25.926 0.00 0.00 0.00 3.24
2353 7384 9.881414 GAAAATGAAACTACGAAAACAAAAGTC 57.119 29.630 0.00 0.00 0.00 3.01
2354 7385 9.634163 AGAAAATGAAACTACGAAAACAAAAGT 57.366 25.926 0.00 0.00 0.00 2.66
2356 7387 9.849166 AGAGAAAATGAAACTACGAAAACAAAA 57.151 25.926 0.00 0.00 0.00 2.44
2357 7388 9.849166 AAGAGAAAATGAAACTACGAAAACAAA 57.151 25.926 0.00 0.00 0.00 2.83
2358 7389 9.849166 AAAGAGAAAATGAAACTACGAAAACAA 57.151 25.926 0.00 0.00 0.00 2.83
2359 7390 9.498307 GAAAGAGAAAATGAAACTACGAAAACA 57.502 29.630 0.00 0.00 0.00 2.83
2360 7391 9.717892 AGAAAGAGAAAATGAAACTACGAAAAC 57.282 29.630 0.00 0.00 0.00 2.43
2362 7393 9.716507 CAAGAAAGAGAAAATGAAACTACGAAA 57.283 29.630 0.00 0.00 0.00 3.46
2363 7394 9.104965 TCAAGAAAGAGAAAATGAAACTACGAA 57.895 29.630 0.00 0.00 0.00 3.85
2364 7395 8.657074 TCAAGAAAGAGAAAATGAAACTACGA 57.343 30.769 0.00 0.00 0.00 3.43
2365 7396 8.552034 ACTCAAGAAAGAGAAAATGAAACTACG 58.448 33.333 0.00 0.00 38.98 3.51
2366 7397 9.871299 GACTCAAGAAAGAGAAAATGAAACTAC 57.129 33.333 0.00 0.00 38.98 2.73
2367 7398 9.613428 TGACTCAAGAAAGAGAAAATGAAACTA 57.387 29.630 0.00 0.00 38.98 2.24
2368 7399 8.511604 TGACTCAAGAAAGAGAAAATGAAACT 57.488 30.769 0.00 0.00 38.98 2.66
2371 7402 9.224267 CCTATGACTCAAGAAAGAGAAAATGAA 57.776 33.333 0.00 0.00 38.98 2.57
2372 7403 8.597167 TCCTATGACTCAAGAAAGAGAAAATGA 58.403 33.333 0.00 0.00 38.98 2.57
2373 7404 8.783833 TCCTATGACTCAAGAAAGAGAAAATG 57.216 34.615 0.00 0.00 38.98 2.32
2374 7405 9.799106 TTTCCTATGACTCAAGAAAGAGAAAAT 57.201 29.630 0.00 0.00 38.98 1.82
2375 7406 9.057089 GTTTCCTATGACTCAAGAAAGAGAAAA 57.943 33.333 0.00 0.00 38.98 2.29
2376 7407 8.210946 TGTTTCCTATGACTCAAGAAAGAGAAA 58.789 33.333 0.00 0.00 38.98 2.52
2377 7408 7.657761 GTGTTTCCTATGACTCAAGAAAGAGAA 59.342 37.037 0.00 0.00 38.98 2.87
2378 7409 7.155328 GTGTTTCCTATGACTCAAGAAAGAGA 58.845 38.462 0.00 0.00 38.98 3.10
2379 7410 6.370166 GGTGTTTCCTATGACTCAAGAAAGAG 59.630 42.308 0.00 0.00 41.44 2.85
2380 7411 6.231211 GGTGTTTCCTATGACTCAAGAAAGA 58.769 40.000 3.65 1.13 0.00 2.52
2381 7412 5.120830 CGGTGTTTCCTATGACTCAAGAAAG 59.879 44.000 3.65 0.00 0.00 2.62
2382 7413 4.994852 CGGTGTTTCCTATGACTCAAGAAA 59.005 41.667 0.00 0.00 0.00 2.52
2383 7414 4.039973 ACGGTGTTTCCTATGACTCAAGAA 59.960 41.667 0.00 0.00 0.00 2.52
2384 7415 3.576982 ACGGTGTTTCCTATGACTCAAGA 59.423 43.478 0.00 0.00 0.00 3.02
2385 7416 3.926616 ACGGTGTTTCCTATGACTCAAG 58.073 45.455 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.