Multiple sequence alignment - TraesCS2D01G405800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G405800 chr2D 100.000 2321 0 0 1 2321 520743749 520741429 0.000000e+00 4287.0
1 TraesCS2D01G405800 chr2D 94.054 185 11 0 1602 1786 630131587 630131403 4.880000e-72 281.0
2 TraesCS2D01G405800 chr2A 94.008 1185 38 17 395 1562 666318733 666319901 0.000000e+00 1764.0
3 TraesCS2D01G405800 chr2A 88.011 367 19 11 1879 2231 666320193 666320548 5.970000e-111 411.0
4 TraesCS2D01G405800 chr2A 88.571 105 9 3 1781 1884 666319950 666320052 8.710000e-25 124.0
5 TraesCS2D01G405800 chr2B 92.794 1235 48 18 347 1562 614827263 614828475 0.000000e+00 1749.0
6 TraesCS2D01G405800 chr2B 88.807 545 43 9 1781 2321 614828524 614829054 0.000000e+00 652.0
7 TraesCS2D01G405800 chr2B 92.308 182 10 1 1602 1783 446108697 446108874 2.960000e-64 255.0
8 TraesCS2D01G405800 chr2B 91.257 183 16 0 1603 1785 621966313 621966495 1.380000e-62 250.0
9 TraesCS2D01G405800 chr2B 91.209 182 11 2 1602 1783 609150529 609150353 2.300000e-60 243.0
10 TraesCS2D01G405800 chr1D 95.477 199 7 2 1593 1790 23371853 23372050 1.340000e-82 316.0
11 TraesCS2D01G405800 chr1D 94.118 170 10 0 1614 1783 471758425 471758256 2.290000e-65 259.0
12 TraesCS2D01G405800 chr1D 97.059 34 0 1 2226 2258 397638820 397638787 3.220000e-04 56.5
13 TraesCS2D01G405800 chr1A 90.659 182 15 2 1602 1783 553880349 553880528 8.290000e-60 241.0
14 TraesCS2D01G405800 chr3A 89.730 185 18 1 1602 1786 738953903 738953720 3.860000e-58 235.0
15 TraesCS2D01G405800 chr5D 88.947 190 18 3 1601 1789 386689277 386689090 4.990000e-57 231.0
16 TraesCS2D01G405800 chr6B 89.362 47 5 0 2229 2275 705475339 705475385 2.490000e-05 60.2
17 TraesCS2D01G405800 chr6B 96.875 32 1 0 2227 2258 538305742 538305711 1.000000e-03 54.7
18 TraesCS2D01G405800 chr5B 97.143 35 0 1 2224 2257 587750962 587750996 8.960000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G405800 chr2D 520741429 520743749 2320 True 4287.000000 4287 100.000000 1 2321 1 chr2D.!!$R1 2320
1 TraesCS2D01G405800 chr2A 666318733 666320548 1815 False 766.333333 1764 90.196667 395 2231 3 chr2A.!!$F1 1836
2 TraesCS2D01G405800 chr2B 614827263 614829054 1791 False 1200.500000 1749 90.800500 347 2321 2 chr2B.!!$F3 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.035439 GATTGGTGACACCGGTGGAT 60.035 55.0 36.47 18.8 42.58 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2191 0.31812 AAACCGCAAAAGCATCCCAG 59.682 50.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.548991 AGCTTCATCGAGAATTGATTGC 57.451 40.909 0.00 0.00 37.01 3.56
25 26 3.943381 AGCTTCATCGAGAATTGATTGCA 59.057 39.130 11.89 0.00 37.01 4.08
26 27 4.397103 AGCTTCATCGAGAATTGATTGCAA 59.603 37.500 0.00 0.00 37.01 4.08
27 28 5.067413 AGCTTCATCGAGAATTGATTGCAAT 59.933 36.000 12.83 12.83 46.35 3.56
28 29 6.261603 AGCTTCATCGAGAATTGATTGCAATA 59.738 34.615 12.97 0.00 43.71 1.90
29 30 6.914215 GCTTCATCGAGAATTGATTGCAATAA 59.086 34.615 12.97 0.92 43.71 1.40
30 31 7.433131 GCTTCATCGAGAATTGATTGCAATAAA 59.567 33.333 12.97 12.29 43.71 1.40
31 32 9.459640 CTTCATCGAGAATTGATTGCAATAAAT 57.540 29.630 15.29 15.29 43.71 1.40
32 33 9.454585 TTCATCGAGAATTGATTGCAATAAATC 57.545 29.630 20.24 14.02 43.71 2.17
33 34 8.623030 TCATCGAGAATTGATTGCAATAAATCA 58.377 29.630 20.24 9.23 43.71 2.57
34 35 8.902735 CATCGAGAATTGATTGCAATAAATCAG 58.097 33.333 20.24 12.57 44.96 2.90
35 36 6.914215 TCGAGAATTGATTGCAATAAATCAGC 59.086 34.615 20.24 13.36 44.96 4.26
36 37 6.916387 CGAGAATTGATTGCAATAAATCAGCT 59.084 34.615 20.24 17.00 44.96 4.24
37 38 7.096599 CGAGAATTGATTGCAATAAATCAGCTG 60.097 37.037 20.24 7.63 44.96 4.24
38 39 6.479001 AGAATTGATTGCAATAAATCAGCTGC 59.521 34.615 20.24 0.23 44.96 5.25
39 40 4.049546 TGATTGCAATAAATCAGCTGCC 57.950 40.909 12.97 0.00 40.72 4.85
40 41 3.447944 TGATTGCAATAAATCAGCTGCCA 59.552 39.130 12.97 0.00 40.72 4.92
41 42 3.513680 TTGCAATAAATCAGCTGCCAG 57.486 42.857 9.47 0.00 33.78 4.85
42 43 2.449464 TGCAATAAATCAGCTGCCAGT 58.551 42.857 9.47 0.00 33.78 4.00
43 44 3.619419 TGCAATAAATCAGCTGCCAGTA 58.381 40.909 9.47 0.00 33.78 2.74
44 45 4.015764 TGCAATAAATCAGCTGCCAGTAA 58.984 39.130 9.47 0.00 33.78 2.24
45 46 4.462132 TGCAATAAATCAGCTGCCAGTAAA 59.538 37.500 9.47 0.00 33.78 2.01
46 47 5.047448 TGCAATAAATCAGCTGCCAGTAAAA 60.047 36.000 9.47 0.00 33.78 1.52
47 48 5.868801 GCAATAAATCAGCTGCCAGTAAAAA 59.131 36.000 9.47 0.00 0.00 1.94
48 49 6.035327 GCAATAAATCAGCTGCCAGTAAAAAG 59.965 38.462 9.47 0.00 0.00 2.27
49 50 7.315142 CAATAAATCAGCTGCCAGTAAAAAGA 58.685 34.615 9.47 0.00 0.00 2.52
50 51 5.382618 AAATCAGCTGCCAGTAAAAAGAG 57.617 39.130 9.47 0.00 0.00 2.85
51 52 3.769739 TCAGCTGCCAGTAAAAAGAGA 57.230 42.857 9.47 0.00 0.00 3.10
52 53 4.085357 TCAGCTGCCAGTAAAAAGAGAA 57.915 40.909 9.47 0.00 0.00 2.87
53 54 4.460263 TCAGCTGCCAGTAAAAAGAGAAA 58.540 39.130 9.47 0.00 0.00 2.52
54 55 5.072741 TCAGCTGCCAGTAAAAAGAGAAAT 58.927 37.500 9.47 0.00 0.00 2.17
55 56 5.048504 TCAGCTGCCAGTAAAAAGAGAAATG 60.049 40.000 9.47 0.00 0.00 2.32
56 57 4.219288 AGCTGCCAGTAAAAAGAGAAATGG 59.781 41.667 0.00 0.00 0.00 3.16
57 58 4.619160 GCTGCCAGTAAAAAGAGAAATGGG 60.619 45.833 0.00 0.00 0.00 4.00
58 59 4.735369 TGCCAGTAAAAAGAGAAATGGGA 58.265 39.130 0.00 0.00 0.00 4.37
59 60 5.144100 TGCCAGTAAAAAGAGAAATGGGAA 58.856 37.500 0.00 0.00 0.00 3.97
60 61 5.243730 TGCCAGTAAAAAGAGAAATGGGAAG 59.756 40.000 0.00 0.00 0.00 3.46
61 62 5.476945 GCCAGTAAAAAGAGAAATGGGAAGA 59.523 40.000 0.00 0.00 0.00 2.87
62 63 6.349694 GCCAGTAAAAAGAGAAATGGGAAGAG 60.350 42.308 0.00 0.00 0.00 2.85
63 64 6.717084 CCAGTAAAAAGAGAAATGGGAAGAGT 59.283 38.462 0.00 0.00 0.00 3.24
64 65 7.308830 CCAGTAAAAAGAGAAATGGGAAGAGTG 60.309 40.741 0.00 0.00 0.00 3.51
65 66 7.445402 CAGTAAAAAGAGAAATGGGAAGAGTGA 59.555 37.037 0.00 0.00 0.00 3.41
66 67 6.890979 AAAAAGAGAAATGGGAAGAGTGAG 57.109 37.500 0.00 0.00 0.00 3.51
67 68 5.574970 AAAGAGAAATGGGAAGAGTGAGT 57.425 39.130 0.00 0.00 0.00 3.41
68 69 4.817318 AGAGAAATGGGAAGAGTGAGTC 57.183 45.455 0.00 0.00 0.00 3.36
69 70 4.424842 AGAGAAATGGGAAGAGTGAGTCT 58.575 43.478 0.00 0.00 36.94 3.24
70 71 4.466015 AGAGAAATGGGAAGAGTGAGTCTC 59.534 45.833 0.00 0.00 43.05 3.36
71 72 3.517500 AGAAATGGGAAGAGTGAGTCTCC 59.482 47.826 0.00 0.00 43.71 3.71
72 73 2.938428 ATGGGAAGAGTGAGTCTCCT 57.062 50.000 0.00 0.00 43.71 3.69
73 74 2.704190 TGGGAAGAGTGAGTCTCCTT 57.296 50.000 0.00 0.00 43.71 3.36
74 75 2.251818 TGGGAAGAGTGAGTCTCCTTG 58.748 52.381 0.00 0.00 43.71 3.61
75 76 2.252714 GGGAAGAGTGAGTCTCCTTGT 58.747 52.381 0.00 0.00 43.71 3.16
76 77 2.232696 GGGAAGAGTGAGTCTCCTTGTC 59.767 54.545 0.00 0.00 43.71 3.18
77 78 3.161866 GGAAGAGTGAGTCTCCTTGTCT 58.838 50.000 0.00 0.00 43.71 3.41
78 79 3.056891 GGAAGAGTGAGTCTCCTTGTCTG 60.057 52.174 0.00 0.00 43.71 3.51
79 80 2.524306 AGAGTGAGTCTCCTTGTCTGG 58.476 52.381 0.00 0.00 43.71 3.86
80 81 1.548269 GAGTGAGTCTCCTTGTCTGGG 59.452 57.143 0.00 0.00 37.22 4.45
81 82 0.036858 GTGAGTCTCCTTGTCTGGGC 60.037 60.000 0.00 0.00 0.00 5.36
82 83 0.471780 TGAGTCTCCTTGTCTGGGCA 60.472 55.000 0.00 0.00 0.00 5.36
83 84 0.036858 GAGTCTCCTTGTCTGGGCAC 60.037 60.000 0.00 0.00 0.00 5.01
84 85 0.764369 AGTCTCCTTGTCTGGGCACA 60.764 55.000 0.00 0.00 0.00 4.57
85 86 0.603975 GTCTCCTTGTCTGGGCACAC 60.604 60.000 0.00 0.00 0.00 3.82
86 87 1.302832 CTCCTTGTCTGGGCACACC 60.303 63.158 0.00 0.00 40.81 4.16
95 96 3.976704 TGGGCACACCATTTAGAGG 57.023 52.632 0.00 0.00 46.80 3.69
96 97 0.331278 TGGGCACACCATTTAGAGGG 59.669 55.000 0.00 0.00 46.80 4.30
97 98 0.623723 GGGCACACCATTTAGAGGGA 59.376 55.000 0.00 0.00 39.85 4.20
98 99 1.682087 GGGCACACCATTTAGAGGGAC 60.682 57.143 0.00 0.00 39.85 4.46
99 100 1.004277 GGCACACCATTTAGAGGGACA 59.996 52.381 0.00 0.00 35.26 4.02
100 101 2.357154 GGCACACCATTTAGAGGGACAT 60.357 50.000 0.00 0.00 35.26 3.06
101 102 3.118038 GGCACACCATTTAGAGGGACATA 60.118 47.826 0.00 0.00 35.26 2.29
102 103 4.130118 GCACACCATTTAGAGGGACATAG 58.870 47.826 0.00 0.00 0.00 2.23
103 104 4.141711 GCACACCATTTAGAGGGACATAGA 60.142 45.833 0.00 0.00 0.00 1.98
104 105 5.629133 GCACACCATTTAGAGGGACATAGAA 60.629 44.000 0.00 0.00 0.00 2.10
105 106 6.414732 CACACCATTTAGAGGGACATAGAAA 58.585 40.000 0.00 0.00 0.00 2.52
106 107 6.884295 CACACCATTTAGAGGGACATAGAAAA 59.116 38.462 0.00 0.00 0.00 2.29
107 108 7.393234 CACACCATTTAGAGGGACATAGAAAAA 59.607 37.037 0.00 0.00 0.00 1.94
139 140 5.945144 AAAAATCATTTGCATCTAGGCCT 57.055 34.783 11.78 11.78 0.00 5.19
141 142 6.396829 AAAATCATTTGCATCTAGGCCTAC 57.603 37.500 8.91 0.00 0.00 3.18
142 143 4.989875 ATCATTTGCATCTAGGCCTACT 57.010 40.909 8.91 0.00 0.00 2.57
143 144 4.778213 TCATTTGCATCTAGGCCTACTT 57.222 40.909 8.91 0.00 0.00 2.24
144 145 4.454678 TCATTTGCATCTAGGCCTACTTG 58.545 43.478 8.91 10.46 0.00 3.16
145 146 2.332063 TTGCATCTAGGCCTACTTGC 57.668 50.000 25.47 25.47 0.00 4.01
146 147 0.104855 TGCATCTAGGCCTACTTGCG 59.895 55.000 25.97 12.12 32.90 4.85
147 148 0.389391 GCATCTAGGCCTACTTGCGA 59.611 55.000 20.76 12.43 0.00 5.10
148 149 1.001406 GCATCTAGGCCTACTTGCGAT 59.999 52.381 20.76 13.92 0.00 4.58
149 150 2.548920 GCATCTAGGCCTACTTGCGATT 60.549 50.000 20.76 2.26 0.00 3.34
150 151 3.306088 GCATCTAGGCCTACTTGCGATTA 60.306 47.826 20.76 0.00 0.00 1.75
151 152 4.489810 CATCTAGGCCTACTTGCGATTAG 58.510 47.826 8.91 0.00 0.00 1.73
152 153 2.891580 TCTAGGCCTACTTGCGATTAGG 59.108 50.000 8.91 12.16 38.37 2.69
153 154 0.759346 AGGCCTACTTGCGATTAGGG 59.241 55.000 16.95 2.12 36.16 3.53
154 155 0.250338 GGCCTACTTGCGATTAGGGG 60.250 60.000 16.95 0.00 36.16 4.79
155 156 0.885150 GCCTACTTGCGATTAGGGGC 60.885 60.000 16.95 3.24 36.16 5.80
156 157 0.759346 CCTACTTGCGATTAGGGGCT 59.241 55.000 9.15 0.00 32.49 5.19
157 158 1.270358 CCTACTTGCGATTAGGGGCTC 60.270 57.143 9.15 0.00 32.49 4.70
158 159 1.689273 CTACTTGCGATTAGGGGCTCT 59.311 52.381 0.00 0.00 0.00 4.09
159 160 0.912486 ACTTGCGATTAGGGGCTCTT 59.088 50.000 0.00 0.00 0.00 2.85
160 161 1.282157 ACTTGCGATTAGGGGCTCTTT 59.718 47.619 0.00 0.00 0.00 2.52
161 162 2.504175 ACTTGCGATTAGGGGCTCTTTA 59.496 45.455 0.00 0.00 0.00 1.85
162 163 3.054655 ACTTGCGATTAGGGGCTCTTTAA 60.055 43.478 0.00 0.00 0.00 1.52
163 164 3.857157 TGCGATTAGGGGCTCTTTAAT 57.143 42.857 0.00 0.00 0.00 1.40
164 165 4.164843 TGCGATTAGGGGCTCTTTAATT 57.835 40.909 0.00 0.00 0.00 1.40
165 166 3.882888 TGCGATTAGGGGCTCTTTAATTG 59.117 43.478 0.00 0.00 0.00 2.32
166 167 3.883489 GCGATTAGGGGCTCTTTAATTGT 59.117 43.478 0.00 0.00 0.00 2.71
167 168 4.261197 GCGATTAGGGGCTCTTTAATTGTG 60.261 45.833 0.00 0.00 0.00 3.33
168 169 4.881850 CGATTAGGGGCTCTTTAATTGTGT 59.118 41.667 0.00 0.00 0.00 3.72
169 170 5.357032 CGATTAGGGGCTCTTTAATTGTGTT 59.643 40.000 0.00 0.00 0.00 3.32
170 171 6.540914 CGATTAGGGGCTCTTTAATTGTGTTA 59.459 38.462 0.00 0.00 0.00 2.41
171 172 7.228706 CGATTAGGGGCTCTTTAATTGTGTTAT 59.771 37.037 0.00 0.00 0.00 1.89
172 173 7.639113 TTAGGGGCTCTTTAATTGTGTTATG 57.361 36.000 0.00 0.00 0.00 1.90
173 174 5.580022 AGGGGCTCTTTAATTGTGTTATGT 58.420 37.500 0.00 0.00 0.00 2.29
174 175 6.016555 AGGGGCTCTTTAATTGTGTTATGTT 58.983 36.000 0.00 0.00 0.00 2.71
175 176 6.496911 AGGGGCTCTTTAATTGTGTTATGTTT 59.503 34.615 0.00 0.00 0.00 2.83
176 177 7.672239 AGGGGCTCTTTAATTGTGTTATGTTTA 59.328 33.333 0.00 0.00 0.00 2.01
177 178 8.308207 GGGGCTCTTTAATTGTGTTATGTTTAA 58.692 33.333 0.00 0.00 0.00 1.52
178 179 9.869757 GGGCTCTTTAATTGTGTTATGTTTAAT 57.130 29.630 0.00 0.00 0.00 1.40
219 220 8.887264 TTTTAAATCCAGCTTTAGGATAACCA 57.113 30.769 4.58 0.00 44.94 3.67
220 221 8.887264 TTTAAATCCAGCTTTAGGATAACCAA 57.113 30.769 4.58 0.00 44.94 3.67
221 222 8.519799 TTAAATCCAGCTTTAGGATAACCAAG 57.480 34.615 4.58 0.00 44.94 3.61
222 223 3.886123 TCCAGCTTTAGGATAACCAAGC 58.114 45.455 6.10 6.10 42.12 4.01
224 225 4.018415 TCCAGCTTTAGGATAACCAAGCTT 60.018 41.667 12.33 0.00 46.43 3.74
225 226 4.706962 CCAGCTTTAGGATAACCAAGCTTT 59.293 41.667 12.33 0.00 46.43 3.51
226 227 5.163612 CCAGCTTTAGGATAACCAAGCTTTC 60.164 44.000 12.33 0.00 46.43 2.62
227 228 5.649831 CAGCTTTAGGATAACCAAGCTTTCT 59.350 40.000 12.33 0.00 46.43 2.52
228 229 5.883115 AGCTTTAGGATAACCAAGCTTTCTC 59.117 40.000 9.93 0.00 46.43 2.87
229 230 5.066634 GCTTTAGGATAACCAAGCTTTCTCC 59.933 44.000 0.00 0.00 40.10 3.71
230 231 5.772393 TTAGGATAACCAAGCTTTCTCCA 57.228 39.130 0.00 0.00 38.94 3.86
231 232 4.227864 AGGATAACCAAGCTTTCTCCAG 57.772 45.455 0.00 0.00 38.94 3.86
232 233 3.846588 AGGATAACCAAGCTTTCTCCAGA 59.153 43.478 0.00 0.00 38.94 3.86
233 234 4.476479 AGGATAACCAAGCTTTCTCCAGAT 59.524 41.667 0.00 0.00 38.94 2.90
234 235 5.044550 AGGATAACCAAGCTTTCTCCAGATT 60.045 40.000 0.00 0.00 38.94 2.40
235 236 5.067023 GGATAACCAAGCTTTCTCCAGATTG 59.933 44.000 0.00 0.00 39.46 2.67
238 239 3.844577 CAAGCTTTCTCCAGATTGGTG 57.155 47.619 0.00 0.00 36.67 4.17
239 240 3.415212 CAAGCTTTCTCCAGATTGGTGA 58.585 45.455 0.00 0.00 36.67 4.02
240 241 3.064900 AGCTTTCTCCAGATTGGTGAC 57.935 47.619 0.00 0.00 39.48 3.67
241 242 2.373169 AGCTTTCTCCAGATTGGTGACA 59.627 45.455 0.00 0.00 39.48 3.58
242 243 2.485814 GCTTTCTCCAGATTGGTGACAC 59.514 50.000 0.00 0.00 39.48 3.67
243 244 2.859165 TTCTCCAGATTGGTGACACC 57.141 50.000 18.28 18.28 39.48 4.16
244 245 0.608130 TCTCCAGATTGGTGACACCG 59.392 55.000 19.67 4.87 42.58 4.94
245 246 0.391661 CTCCAGATTGGTGACACCGG 60.392 60.000 19.67 13.82 42.58 5.28
246 247 1.125093 TCCAGATTGGTGACACCGGT 61.125 55.000 19.67 0.00 42.58 5.28
247 248 0.955428 CCAGATTGGTGACACCGGTG 60.955 60.000 32.83 32.83 42.58 4.94
248 249 0.955428 CAGATTGGTGACACCGGTGG 60.955 60.000 36.47 19.58 42.58 4.61
249 250 1.125093 AGATTGGTGACACCGGTGGA 61.125 55.000 36.47 21.08 42.58 4.02
250 251 0.035439 GATTGGTGACACCGGTGGAT 60.035 55.000 36.47 18.80 42.58 3.41
251 252 0.322456 ATTGGTGACACCGGTGGATG 60.322 55.000 36.47 14.08 42.58 3.51
252 253 1.701031 TTGGTGACACCGGTGGATGT 61.701 55.000 36.47 17.58 42.58 3.06
253 254 0.832559 TGGTGACACCGGTGGATGTA 60.833 55.000 36.47 17.96 42.58 2.29
254 255 0.539986 GGTGACACCGGTGGATGTAT 59.460 55.000 36.47 16.36 34.19 2.29
255 256 1.065709 GGTGACACCGGTGGATGTATT 60.066 52.381 36.47 15.57 34.19 1.89
256 257 2.277084 GTGACACCGGTGGATGTATTC 58.723 52.381 36.47 23.16 34.19 1.75
257 258 1.903183 TGACACCGGTGGATGTATTCA 59.097 47.619 36.47 25.36 34.19 2.57
258 259 2.503765 TGACACCGGTGGATGTATTCAT 59.496 45.455 36.47 13.18 36.95 2.57
259 260 3.707102 TGACACCGGTGGATGTATTCATA 59.293 43.478 36.47 7.24 34.06 2.15
260 261 4.346709 TGACACCGGTGGATGTATTCATAT 59.653 41.667 36.47 12.40 34.06 1.78
261 262 4.894784 ACACCGGTGGATGTATTCATATC 58.105 43.478 36.47 0.00 34.06 1.63
262 263 3.926527 CACCGGTGGATGTATTCATATCG 59.073 47.826 27.57 0.00 34.06 2.92
263 264 2.930040 CCGGTGGATGTATTCATATCGC 59.070 50.000 0.00 0.00 34.06 4.58
264 265 2.930040 CGGTGGATGTATTCATATCGCC 59.070 50.000 7.32 7.32 36.04 5.54
265 266 3.368427 CGGTGGATGTATTCATATCGCCT 60.368 47.826 12.51 0.00 36.62 5.52
266 267 3.935203 GGTGGATGTATTCATATCGCCTG 59.065 47.826 9.16 0.00 36.25 4.85
267 268 3.935203 GTGGATGTATTCATATCGCCTGG 59.065 47.826 0.00 0.00 34.06 4.45
268 269 2.939103 GGATGTATTCATATCGCCTGGC 59.061 50.000 9.11 9.11 34.06 4.85
269 270 3.599343 GATGTATTCATATCGCCTGGCA 58.401 45.455 20.29 6.38 34.06 4.92
270 271 3.483808 TGTATTCATATCGCCTGGCAA 57.516 42.857 20.29 0.00 0.00 4.52
271 272 3.402110 TGTATTCATATCGCCTGGCAAG 58.598 45.455 20.29 3.04 0.00 4.01
272 273 1.242076 ATTCATATCGCCTGGCAAGC 58.758 50.000 20.29 0.00 0.00 4.01
279 280 2.974698 GCCTGGCAAGCGCGATAT 60.975 61.111 15.17 0.00 39.92 1.63
280 281 2.941333 CCTGGCAAGCGCGATATG 59.059 61.111 12.10 6.20 39.92 1.78
281 282 2.250485 CTGGCAAGCGCGATATGC 59.750 61.111 12.10 16.49 39.92 3.14
282 283 2.203056 TGGCAAGCGCGATATGCT 60.203 55.556 23.35 4.56 46.68 3.79
283 284 0.945743 CTGGCAAGCGCGATATGCTA 60.946 55.000 23.35 18.94 43.14 3.49
284 285 0.531753 TGGCAAGCGCGATATGCTAA 60.532 50.000 23.35 13.81 43.14 3.09
285 286 0.110644 GGCAAGCGCGATATGCTAAC 60.111 55.000 23.35 9.69 43.14 2.34
286 287 0.581529 GCAAGCGCGATATGCTAACA 59.418 50.000 12.10 0.00 43.14 2.41
287 288 1.657538 GCAAGCGCGATATGCTAACAC 60.658 52.381 12.10 0.00 43.14 3.32
288 289 1.592543 CAAGCGCGATATGCTAACACA 59.407 47.619 12.10 0.00 43.14 3.72
289 290 1.934589 AGCGCGATATGCTAACACAA 58.065 45.000 12.10 0.00 41.87 3.33
290 291 2.276201 AGCGCGATATGCTAACACAAA 58.724 42.857 12.10 0.00 41.87 2.83
291 292 2.030457 AGCGCGATATGCTAACACAAAC 59.970 45.455 12.10 0.00 41.87 2.93
292 293 2.849502 GCGCGATATGCTAACACAAACC 60.850 50.000 12.10 0.00 43.27 3.27
293 294 2.350192 CGCGATATGCTAACACAAACCA 59.650 45.455 0.00 0.00 43.27 3.67
294 295 3.181515 CGCGATATGCTAACACAAACCAA 60.182 43.478 0.00 0.00 43.27 3.67
295 296 4.670478 CGCGATATGCTAACACAAACCAAA 60.670 41.667 0.00 0.00 43.27 3.28
296 297 5.157781 GCGATATGCTAACACAAACCAAAA 58.842 37.500 0.00 0.00 41.73 2.44
297 298 5.286082 GCGATATGCTAACACAAACCAAAAG 59.714 40.000 0.00 0.00 41.73 2.27
298 299 5.799936 CGATATGCTAACACAAACCAAAAGG 59.200 40.000 0.00 0.00 0.00 3.11
299 300 3.810310 TGCTAACACAAACCAAAAGGG 57.190 42.857 0.00 0.00 44.81 3.95
300 301 3.366396 TGCTAACACAAACCAAAAGGGA 58.634 40.909 0.00 0.00 41.15 4.20
301 302 3.769844 TGCTAACACAAACCAAAAGGGAA 59.230 39.130 0.00 0.00 41.15 3.97
302 303 4.142049 TGCTAACACAAACCAAAAGGGAAG 60.142 41.667 0.00 0.00 41.15 3.46
303 304 4.098807 GCTAACACAAACCAAAAGGGAAGA 59.901 41.667 0.00 0.00 41.15 2.87
304 305 5.394773 GCTAACACAAACCAAAAGGGAAGAA 60.395 40.000 0.00 0.00 41.15 2.52
305 306 4.736126 ACACAAACCAAAAGGGAAGAAG 57.264 40.909 0.00 0.00 41.15 2.85
306 307 4.349365 ACACAAACCAAAAGGGAAGAAGA 58.651 39.130 0.00 0.00 41.15 2.87
307 308 4.402474 ACACAAACCAAAAGGGAAGAAGAG 59.598 41.667 0.00 0.00 41.15 2.85
308 309 4.644685 CACAAACCAAAAGGGAAGAAGAGA 59.355 41.667 0.00 0.00 41.15 3.10
309 310 4.889995 ACAAACCAAAAGGGAAGAAGAGAG 59.110 41.667 0.00 0.00 41.15 3.20
310 311 4.797912 AACCAAAAGGGAAGAAGAGAGT 57.202 40.909 0.00 0.00 41.15 3.24
311 312 4.359434 ACCAAAAGGGAAGAAGAGAGTC 57.641 45.455 0.00 0.00 41.15 3.36
312 313 3.977326 ACCAAAAGGGAAGAAGAGAGTCT 59.023 43.478 0.00 0.00 41.15 3.24
313 314 4.413851 ACCAAAAGGGAAGAAGAGAGTCTT 59.586 41.667 0.00 0.00 40.62 3.01
314 315 4.759183 CCAAAAGGGAAGAAGAGAGTCTTG 59.241 45.833 0.00 0.00 37.98 3.02
315 316 4.632327 AAAGGGAAGAAGAGAGTCTTGG 57.368 45.455 0.00 0.00 36.73 3.61
316 317 3.551635 AGGGAAGAAGAGAGTCTTGGA 57.448 47.619 0.00 0.00 36.73 3.53
317 318 4.073425 AGGGAAGAAGAGAGTCTTGGAT 57.927 45.455 0.00 0.00 36.73 3.41
318 319 4.434195 AGGGAAGAAGAGAGTCTTGGATT 58.566 43.478 0.00 0.00 36.73 3.01
319 320 4.224818 AGGGAAGAAGAGAGTCTTGGATTG 59.775 45.833 0.00 0.00 36.73 2.67
320 321 4.019771 GGGAAGAAGAGAGTCTTGGATTGT 60.020 45.833 0.00 0.00 36.73 2.71
321 322 5.513962 GGGAAGAAGAGAGTCTTGGATTGTT 60.514 44.000 0.00 0.00 36.73 2.83
322 323 5.641636 GGAAGAAGAGAGTCTTGGATTGTTC 59.358 44.000 0.00 2.51 36.73 3.18
323 324 6.432403 AAGAAGAGAGTCTTGGATTGTTCT 57.568 37.500 0.00 0.00 36.73 3.01
324 325 6.432403 AGAAGAGAGTCTTGGATTGTTCTT 57.568 37.500 0.00 0.00 36.73 2.52
325 326 6.229733 AGAAGAGAGTCTTGGATTGTTCTTG 58.770 40.000 0.00 0.00 36.73 3.02
326 327 5.559148 AGAGAGTCTTGGATTGTTCTTGT 57.441 39.130 0.00 0.00 0.00 3.16
327 328 5.546526 AGAGAGTCTTGGATTGTTCTTGTC 58.453 41.667 0.00 0.00 0.00 3.18
328 329 5.306678 AGAGAGTCTTGGATTGTTCTTGTCT 59.693 40.000 0.00 0.00 0.00 3.41
329 330 5.934781 AGAGTCTTGGATTGTTCTTGTCTT 58.065 37.500 0.00 0.00 0.00 3.01
330 331 6.360618 AGAGTCTTGGATTGTTCTTGTCTTT 58.639 36.000 0.00 0.00 0.00 2.52
331 332 6.261826 AGAGTCTTGGATTGTTCTTGTCTTTG 59.738 38.462 0.00 0.00 0.00 2.77
332 333 5.300286 AGTCTTGGATTGTTCTTGTCTTTGG 59.700 40.000 0.00 0.00 0.00 3.28
333 334 5.299279 GTCTTGGATTGTTCTTGTCTTTGGA 59.701 40.000 0.00 0.00 0.00 3.53
334 335 5.890985 TCTTGGATTGTTCTTGTCTTTGGAA 59.109 36.000 0.00 0.00 0.00 3.53
335 336 6.379703 TCTTGGATTGTTCTTGTCTTTGGAAA 59.620 34.615 0.00 0.00 0.00 3.13
336 337 6.147864 TGGATTGTTCTTGTCTTTGGAAAG 57.852 37.500 0.00 0.00 37.36 2.62
337 338 4.984785 GGATTGTTCTTGTCTTTGGAAAGC 59.015 41.667 0.00 0.00 35.99 3.51
338 339 4.385358 TTGTTCTTGTCTTTGGAAAGCC 57.615 40.909 0.00 0.00 35.99 4.35
339 340 3.360867 TGTTCTTGTCTTTGGAAAGCCA 58.639 40.909 0.00 0.00 44.17 4.75
340 341 3.960102 TGTTCTTGTCTTTGGAAAGCCAT 59.040 39.130 0.00 0.00 45.46 4.40
341 342 5.136828 TGTTCTTGTCTTTGGAAAGCCATA 58.863 37.500 0.00 0.00 45.46 2.74
342 343 5.009610 TGTTCTTGTCTTTGGAAAGCCATAC 59.990 40.000 0.00 0.00 45.46 2.39
343 344 4.985538 TCTTGTCTTTGGAAAGCCATACT 58.014 39.130 0.00 0.00 45.46 2.12
344 345 4.761739 TCTTGTCTTTGGAAAGCCATACTG 59.238 41.667 0.00 0.00 45.46 2.74
345 346 3.420893 TGTCTTTGGAAAGCCATACTGG 58.579 45.455 0.00 0.00 45.46 4.00
346 347 3.181434 TGTCTTTGGAAAGCCATACTGGT 60.181 43.478 0.00 0.00 45.46 4.00
347 348 3.826729 GTCTTTGGAAAGCCATACTGGTT 59.173 43.478 0.00 0.00 45.46 3.67
348 349 3.826157 TCTTTGGAAAGCCATACTGGTTG 59.174 43.478 0.00 0.00 45.46 3.77
352 353 2.099756 GGAAAGCCATACTGGTTGATGC 59.900 50.000 0.00 0.00 40.46 3.91
368 369 4.857871 TGATGCGCACAAGATTAAGTAC 57.142 40.909 14.90 0.00 0.00 2.73
377 378 6.035220 CGCACAAGATTAAGTACGATGGTTTA 59.965 38.462 0.00 0.00 0.00 2.01
380 381 8.380644 CACAAGATTAAGTACGATGGTTTACAG 58.619 37.037 0.00 0.00 0.00 2.74
490 491 2.699846 GCCAATTGCCATTTATCAGGGA 59.300 45.455 0.00 0.00 0.00 4.20
499 500 4.287067 GCCATTTATCAGGGACTCCATCTA 59.713 45.833 0.00 0.00 34.60 1.98
509 510 3.260884 GGGACTCCATCTATCGCCAAATA 59.739 47.826 0.00 0.00 0.00 1.40
510 511 4.080863 GGGACTCCATCTATCGCCAAATAT 60.081 45.833 0.00 0.00 0.00 1.28
516 517 8.321353 ACTCCATCTATCGCCAAATATTTATGA 58.679 33.333 0.00 0.00 0.00 2.15
610 612 2.042686 ATGCATCACGCCACTAACAT 57.957 45.000 0.00 0.00 41.33 2.71
703 706 0.727398 CCGAATCTGAAAAGGACGGC 59.273 55.000 0.00 0.00 33.03 5.68
771 774 1.302192 CAAGCCGAACGGAAGGGAA 60.302 57.895 17.63 0.00 37.50 3.97
772 775 1.003718 AAGCCGAACGGAAGGGAAG 60.004 57.895 17.63 0.00 37.50 3.46
773 776 2.436115 GCCGAACGGAAGGGAAGG 60.436 66.667 17.63 0.00 37.50 3.46
774 777 2.267961 CCGAACGGAAGGGAAGGG 59.732 66.667 7.53 0.00 37.50 3.95
775 778 2.288025 CCGAACGGAAGGGAAGGGA 61.288 63.158 7.53 0.00 37.50 4.20
957 964 1.074850 CCCTCCCCCTTCTCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
975 982 3.385384 CTCCCGCTCTGCTGGTCA 61.385 66.667 0.33 0.00 34.54 4.02
977 984 4.463879 CCCGCTCTGCTGGTCAGG 62.464 72.222 0.00 0.00 43.06 3.86
978 985 3.699894 CCGCTCTGCTGGTCAGGT 61.700 66.667 0.00 0.00 43.06 4.00
979 986 2.125753 CGCTCTGCTGGTCAGGTC 60.126 66.667 0.00 0.00 43.06 3.85
982 989 1.214062 CTCTGCTGGTCAGGTCGAC 59.786 63.158 7.13 7.13 43.06 4.20
984 991 4.357947 TGCTGGTCAGGTCGACGC 62.358 66.667 9.92 5.93 46.42 5.19
985 992 4.057428 GCTGGTCAGGTCGACGCT 62.057 66.667 9.92 5.07 46.42 5.07
986 993 2.126307 CTGGTCAGGTCGACGCTG 60.126 66.667 21.24 21.24 46.42 5.18
987 994 4.357947 TGGTCAGGTCGACGCTGC 62.358 66.667 22.02 17.72 46.42 5.25
989 996 4.357947 GTCAGGTCGACGCTGCCA 62.358 66.667 22.02 9.23 34.19 4.92
990 997 3.381983 TCAGGTCGACGCTGCCAT 61.382 61.111 22.02 0.00 0.00 4.40
1147 1157 2.282180 GGCACCTTTTCCTGGCGA 60.282 61.111 0.00 0.00 0.00 5.54
1242 1252 1.373497 CTTCGACGACAGCAGCCTT 60.373 57.895 0.00 0.00 0.00 4.35
1445 1471 9.787626 GTATTTTCGGATAAATGTACATGTACG 57.212 33.333 26.59 14.78 38.85 3.67
1486 1515 6.398205 GCAAGTAGTTTTCGTTTTTATTCGCC 60.398 38.462 0.00 0.00 0.00 5.54
1506 1535 3.488553 GCCGGGTGTAAATATTCTTGTGC 60.489 47.826 2.18 0.00 0.00 4.57
1513 1542 7.244192 GGTGTAAATATTCTTGTGCTGTTCTC 58.756 38.462 0.00 0.00 0.00 2.87
1515 1544 6.939730 TGTAAATATTCTTGTGCTGTTCTCCA 59.060 34.615 0.00 0.00 0.00 3.86
1519 1548 4.637483 TTCTTGTGCTGTTCTCCAAAAG 57.363 40.909 0.00 0.00 0.00 2.27
1520 1549 3.884895 TCTTGTGCTGTTCTCCAAAAGA 58.115 40.909 0.00 0.00 33.95 2.52
1552 1582 1.545428 GCAGGGGTTGTGATGAACTGA 60.545 52.381 0.00 0.00 0.00 3.41
1562 1592 3.776969 TGTGATGAACTGAATAGGAGCCT 59.223 43.478 0.00 0.00 0.00 4.58
1563 1593 4.141846 TGTGATGAACTGAATAGGAGCCTC 60.142 45.833 0.00 0.00 0.00 4.70
1564 1594 3.389329 TGATGAACTGAATAGGAGCCTCC 59.611 47.826 1.26 1.26 36.58 4.30
1586 1637 8.391106 CCTCCTATTAAATTCAGAACAAGTTCG 58.609 37.037 7.25 3.52 43.97 3.95
1589 1640 8.175716 CCTATTAAATTCAGAACAAGTTCGTCC 58.824 37.037 7.25 0.00 43.97 4.79
1590 1641 7.745620 ATTAAATTCAGAACAAGTTCGTCCT 57.254 32.000 7.25 0.00 43.97 3.85
1591 1642 7.562454 TTAAATTCAGAACAAGTTCGTCCTT 57.438 32.000 7.25 2.62 43.97 3.36
1592 1643 8.665643 TTAAATTCAGAACAAGTTCGTCCTTA 57.334 30.769 7.25 1.84 43.97 2.69
1593 1644 7.745620 AAATTCAGAACAAGTTCGTCCTTAT 57.254 32.000 7.25 0.00 43.97 1.73
1594 1645 7.745620 AATTCAGAACAAGTTCGTCCTTATT 57.254 32.000 7.25 1.74 43.97 1.40
1595 1646 8.842358 AATTCAGAACAAGTTCGTCCTTATTA 57.158 30.769 7.25 0.00 43.97 0.98
1596 1647 8.842358 ATTCAGAACAAGTTCGTCCTTATTAA 57.158 30.769 7.25 0.00 43.97 1.40
1597 1648 8.842358 TTCAGAACAAGTTCGTCCTTATTAAT 57.158 30.769 7.25 0.00 43.97 1.40
1598 1649 8.842358 TCAGAACAAGTTCGTCCTTATTAATT 57.158 30.769 7.25 0.00 43.97 1.40
1599 1650 9.280174 TCAGAACAAGTTCGTCCTTATTAATTT 57.720 29.630 7.25 0.00 43.97 1.82
1600 1651 9.893305 CAGAACAAGTTCGTCCTTATTAATTTT 57.107 29.630 7.25 0.00 43.97 1.82
1601 1652 9.893305 AGAACAAGTTCGTCCTTATTAATTTTG 57.107 29.630 7.25 0.00 43.97 2.44
1602 1653 9.124807 GAACAAGTTCGTCCTTATTAATTTTGG 57.875 33.333 0.00 0.00 0.00 3.28
1603 1654 7.599171 ACAAGTTCGTCCTTATTAATTTTGGG 58.401 34.615 0.00 0.00 0.00 4.12
1604 1655 7.231925 ACAAGTTCGTCCTTATTAATTTTGGGT 59.768 33.333 0.00 0.00 0.00 4.51
1605 1656 7.153217 AGTTCGTCCTTATTAATTTTGGGTG 57.847 36.000 0.00 0.00 0.00 4.61
1606 1657 6.717997 AGTTCGTCCTTATTAATTTTGGGTGT 59.282 34.615 0.00 0.00 0.00 4.16
1607 1658 7.884354 AGTTCGTCCTTATTAATTTTGGGTGTA 59.116 33.333 0.00 0.00 0.00 2.90
1608 1659 7.852971 TCGTCCTTATTAATTTTGGGTGTAG 57.147 36.000 0.00 0.00 0.00 2.74
1609 1660 6.316890 TCGTCCTTATTAATTTTGGGTGTAGC 59.683 38.462 0.00 0.00 0.00 3.58
1610 1661 6.317893 CGTCCTTATTAATTTTGGGTGTAGCT 59.682 38.462 0.00 0.00 0.00 3.32
1611 1662 7.496591 CGTCCTTATTAATTTTGGGTGTAGCTA 59.503 37.037 0.00 0.00 0.00 3.32
1612 1663 8.837389 GTCCTTATTAATTTTGGGTGTAGCTAG 58.163 37.037 0.00 0.00 0.00 3.42
1613 1664 7.996644 TCCTTATTAATTTTGGGTGTAGCTAGG 59.003 37.037 0.00 0.00 0.00 3.02
1614 1665 7.778382 CCTTATTAATTTTGGGTGTAGCTAGGT 59.222 37.037 0.00 0.00 0.00 3.08
1615 1666 8.741603 TTATTAATTTTGGGTGTAGCTAGGTC 57.258 34.615 0.00 0.00 0.00 3.85
1616 1667 4.929146 AATTTTGGGTGTAGCTAGGTCT 57.071 40.909 0.00 0.00 0.00 3.85
1617 1668 3.975168 TTTTGGGTGTAGCTAGGTCTC 57.025 47.619 0.00 0.00 0.00 3.36
1618 1669 2.615986 TTGGGTGTAGCTAGGTCTCA 57.384 50.000 0.00 0.00 0.00 3.27
1619 1670 2.145397 TGGGTGTAGCTAGGTCTCAG 57.855 55.000 0.00 0.00 0.00 3.35
1620 1671 1.358103 TGGGTGTAGCTAGGTCTCAGT 59.642 52.381 0.00 0.00 0.00 3.41
1621 1672 2.025898 GGGTGTAGCTAGGTCTCAGTC 58.974 57.143 0.00 0.00 0.00 3.51
1622 1673 1.671845 GGTGTAGCTAGGTCTCAGTCG 59.328 57.143 0.00 0.00 0.00 4.18
1623 1674 2.630158 GTGTAGCTAGGTCTCAGTCGA 58.370 52.381 0.00 0.00 0.00 4.20
1624 1675 2.352342 GTGTAGCTAGGTCTCAGTCGAC 59.648 54.545 7.70 7.70 0.00 4.20
1625 1676 2.236644 TGTAGCTAGGTCTCAGTCGACT 59.763 50.000 13.58 13.58 34.38 4.18
1626 1677 1.745232 AGCTAGGTCTCAGTCGACTG 58.255 55.000 34.76 34.76 45.08 3.51
1714 1765 4.446994 TTTTTGCACGAATATCCATGCA 57.553 36.364 0.00 0.00 45.94 3.96
1718 1769 4.652421 TGCACGAATATCCATGCAAAAT 57.348 36.364 0.00 0.00 44.72 1.82
1719 1770 5.008619 TGCACGAATATCCATGCAAAATT 57.991 34.783 0.00 0.00 44.72 1.82
1720 1771 6.141560 TGCACGAATATCCATGCAAAATTA 57.858 33.333 0.00 0.00 44.72 1.40
1721 1772 6.567959 TGCACGAATATCCATGCAAAATTAA 58.432 32.000 0.00 0.00 44.72 1.40
1722 1773 7.038048 TGCACGAATATCCATGCAAAATTAAA 58.962 30.769 0.00 0.00 44.72 1.52
1723 1774 7.222417 TGCACGAATATCCATGCAAAATTAAAG 59.778 33.333 0.00 0.00 44.72 1.85
1724 1775 7.434897 GCACGAATATCCATGCAAAATTAAAGA 59.565 33.333 0.00 0.00 38.00 2.52
1725 1776 9.299963 CACGAATATCCATGCAAAATTAAAGAA 57.700 29.630 0.00 0.00 0.00 2.52
1726 1777 9.868277 ACGAATATCCATGCAAAATTAAAGAAA 57.132 25.926 0.00 0.00 0.00 2.52
1745 1796 7.867305 AAGAAAGATACTATCGACTGAGACA 57.133 36.000 0.00 0.00 0.00 3.41
1746 1797 8.458573 AAGAAAGATACTATCGACTGAGACAT 57.541 34.615 0.00 0.00 0.00 3.06
1747 1798 9.562408 AAGAAAGATACTATCGACTGAGACATA 57.438 33.333 0.00 0.00 0.00 2.29
1748 1799 9.562408 AGAAAGATACTATCGACTGAGACATAA 57.438 33.333 0.00 0.00 0.00 1.90
1749 1800 9.601971 GAAAGATACTATCGACTGAGACATAAC 57.398 37.037 0.00 0.00 0.00 1.89
1750 1801 7.354025 AGATACTATCGACTGAGACATAACG 57.646 40.000 0.00 0.00 0.00 3.18
1751 1802 7.153315 AGATACTATCGACTGAGACATAACGA 58.847 38.462 0.00 0.00 0.00 3.85
1752 1803 7.656542 AGATACTATCGACTGAGACATAACGAA 59.343 37.037 0.00 0.00 33.77 3.85
1753 1804 6.050454 ACTATCGACTGAGACATAACGAAG 57.950 41.667 0.00 0.00 33.77 3.79
1755 1806 4.337985 TCGACTGAGACATAACGAAGTC 57.662 45.455 0.00 0.00 45.00 3.01
1756 1807 4.001652 TCGACTGAGACATAACGAAGTCT 58.998 43.478 0.00 0.00 45.00 3.24
1757 1808 5.173664 TCGACTGAGACATAACGAAGTCTA 58.826 41.667 0.00 0.00 45.00 2.59
1758 1809 5.640783 TCGACTGAGACATAACGAAGTCTAA 59.359 40.000 0.00 0.00 45.00 2.10
1759 1810 5.960683 CGACTGAGACATAACGAAGTCTAAG 59.039 44.000 5.59 5.59 45.00 2.18
1760 1811 6.821031 ACTGAGACATAACGAAGTCTAAGT 57.179 37.500 6.74 6.74 46.82 2.24
1762 1813 5.866075 TGAGACATAACGAAGTCTAAGTCG 58.134 41.667 0.00 0.00 45.00 4.18
1763 1814 5.640783 TGAGACATAACGAAGTCTAAGTCGA 59.359 40.000 0.00 0.00 45.00 4.20
1764 1815 5.867166 AGACATAACGAAGTCTAAGTCGAC 58.133 41.667 7.70 7.70 45.00 4.20
1765 1816 5.642919 AGACATAACGAAGTCTAAGTCGACT 59.357 40.000 13.58 13.58 45.00 4.18
1766 1817 5.629097 ACATAACGAAGTCTAAGTCGACTG 58.371 41.667 20.85 7.79 45.00 3.51
1767 1818 5.410746 ACATAACGAAGTCTAAGTCGACTGA 59.589 40.000 20.85 11.31 45.00 3.41
1768 1819 4.407496 AACGAAGTCTAAGTCGACTGAG 57.593 45.455 22.32 22.32 45.00 3.35
1769 1820 3.661944 ACGAAGTCTAAGTCGACTGAGA 58.338 45.455 26.12 26.12 43.14 3.27
1788 1839 8.854614 ACTGAGACTTAGCAAAACTGATTAAT 57.145 30.769 0.00 0.00 0.00 1.40
1806 1857 8.275015 TGATTAATTTTCTACGCTCCAAATGA 57.725 30.769 0.00 0.00 0.00 2.57
1818 1869 4.278678 CTCCAAATGAGCATTACGTTCC 57.721 45.455 0.00 0.00 33.47 3.62
1851 1903 3.130516 TGTGGTACTTATCTCAGCTTCGG 59.869 47.826 0.00 0.00 0.00 4.30
1907 2104 2.031245 TGCACGTCAAATAAGTTGCTGG 60.031 45.455 0.00 0.00 37.13 4.85
1929 2136 7.296628 TGGATATTACTTTGTTGGCTTGTTT 57.703 32.000 0.00 0.00 0.00 2.83
1930 2137 7.731054 TGGATATTACTTTGTTGGCTTGTTTT 58.269 30.769 0.00 0.00 0.00 2.43
1931 2138 7.655328 TGGATATTACTTTGTTGGCTTGTTTTG 59.345 33.333 0.00 0.00 0.00 2.44
1933 2140 9.255304 GATATTACTTTGTTGGCTTGTTTTGAA 57.745 29.630 0.00 0.00 0.00 2.69
1934 2141 6.959671 TTACTTTGTTGGCTTGTTTTGAAG 57.040 33.333 0.00 0.00 0.00 3.02
1939 2146 5.146010 TGTTGGCTTGTTTTGAAGTCTTT 57.854 34.783 0.00 0.00 0.00 2.52
1948 2155 4.034048 TGTTTTGAAGTCTTTCAGAGTCGC 59.966 41.667 0.00 0.00 43.76 5.19
1953 2160 2.424557 AGTCTTTCAGAGTCGCGTCTA 58.575 47.619 5.70 0.00 0.00 2.59
1991 2198 5.544176 ACAGTGTATATTAGTCCCTGGGATG 59.456 44.000 20.40 10.68 32.73 3.51
1993 2200 4.532521 GTGTATATTAGTCCCTGGGATGCT 59.467 45.833 20.40 14.68 32.73 3.79
1994 2201 5.013183 GTGTATATTAGTCCCTGGGATGCTT 59.987 44.000 20.40 7.89 32.73 3.91
1995 2202 5.610982 TGTATATTAGTCCCTGGGATGCTTT 59.389 40.000 20.40 6.08 32.73 3.51
1996 2203 5.669798 ATATTAGTCCCTGGGATGCTTTT 57.330 39.130 20.40 5.93 32.73 2.27
1997 2204 2.806945 TAGTCCCTGGGATGCTTTTG 57.193 50.000 20.40 0.00 32.73 2.44
2039 2246 4.201812 TGTCGACTTTTCTTTGCTGTCTTG 60.202 41.667 17.92 0.00 0.00 3.02
2110 2321 6.169094 AGAGATATGACGGATATGCCTTTTG 58.831 40.000 0.00 0.00 0.00 2.44
2111 2322 5.869579 AGATATGACGGATATGCCTTTTGT 58.130 37.500 0.00 0.00 0.00 2.83
2165 2376 4.349342 AGCTTTCGGAGGGAATATTCTCAT 59.651 41.667 17.59 4.62 33.85 2.90
2167 2378 5.743130 GCTTTCGGAGGGAATATTCTCATGA 60.743 44.000 17.59 8.77 33.85 3.07
2235 2446 2.355010 AACCAGGCCATTAGAGCATC 57.645 50.000 5.01 0.00 0.00 3.91
2249 2460 1.153429 GCATCTACGGCCGGACTTT 60.153 57.895 31.76 10.73 0.00 2.66
2250 2461 1.429148 GCATCTACGGCCGGACTTTG 61.429 60.000 31.76 19.92 0.00 2.77
2258 2469 1.531739 GGCCGGACTTTGCAAATCCA 61.532 55.000 26.35 5.24 32.35 3.41
2259 2470 0.109132 GCCGGACTTTGCAAATCCAG 60.109 55.000 26.35 20.70 32.35 3.86
2260 2471 1.247567 CCGGACTTTGCAAATCCAGT 58.752 50.000 26.35 17.32 32.35 4.00
2261 2472 1.200020 CCGGACTTTGCAAATCCAGTC 59.800 52.381 26.35 22.41 35.82 3.51
2274 2485 1.111116 TCCAGTCCCTTATACGGCCG 61.111 60.000 26.86 26.86 0.00 6.13
2275 2486 1.397390 CCAGTCCCTTATACGGCCGT 61.397 60.000 36.01 36.01 0.00 5.68
2278 2489 1.076118 TCCCTTATACGGCCGTGGA 60.076 57.895 40.02 32.20 0.00 4.02
2315 2526 0.827507 CCGGATGGCCCCTTATTTGG 60.828 60.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.078479 GCAATCAATTCTCGATGAAGCTATG 58.922 40.000 0.00 3.53 38.18 2.23
1 2 5.761726 TGCAATCAATTCTCGATGAAGCTAT 59.238 36.000 12.65 0.00 38.18 2.97
2 3 5.118286 TGCAATCAATTCTCGATGAAGCTA 58.882 37.500 12.65 1.99 38.18 3.32
3 4 3.943381 TGCAATCAATTCTCGATGAAGCT 59.057 39.130 12.65 0.00 38.18 3.74
4 5 4.282950 TGCAATCAATTCTCGATGAAGC 57.717 40.909 7.29 7.29 38.18 3.86
5 6 8.845942 TTTATTGCAATCAATTCTCGATGAAG 57.154 30.769 16.86 0.00 42.51 3.02
6 7 9.454585 GATTTATTGCAATCAATTCTCGATGAA 57.545 29.630 16.86 0.00 42.51 2.57
7 8 8.623030 TGATTTATTGCAATCAATTCTCGATGA 58.377 29.630 16.86 0.00 42.51 2.92
8 9 8.791355 TGATTTATTGCAATCAATTCTCGATG 57.209 30.769 16.86 0.00 42.51 3.84
9 10 7.594015 GCTGATTTATTGCAATCAATTCTCGAT 59.406 33.333 16.86 0.00 41.59 3.59
10 11 6.914215 GCTGATTTATTGCAATCAATTCTCGA 59.086 34.615 16.86 0.00 41.59 4.04
11 12 6.916387 AGCTGATTTATTGCAATCAATTCTCG 59.084 34.615 16.86 7.71 41.59 4.04
12 13 7.306632 GCAGCTGATTTATTGCAATCAATTCTC 60.307 37.037 20.43 6.83 41.59 2.87
13 14 6.479001 GCAGCTGATTTATTGCAATCAATTCT 59.521 34.615 20.43 11.76 41.59 2.40
14 15 6.292703 GGCAGCTGATTTATTGCAATCAATTC 60.293 38.462 20.43 13.54 41.59 2.17
15 16 5.526111 GGCAGCTGATTTATTGCAATCAATT 59.474 36.000 20.43 5.63 41.59 2.32
16 17 5.054477 GGCAGCTGATTTATTGCAATCAAT 58.946 37.500 20.43 16.81 41.59 2.57
17 18 4.081586 TGGCAGCTGATTTATTGCAATCAA 60.082 37.500 20.43 12.18 41.59 2.57
18 19 3.447944 TGGCAGCTGATTTATTGCAATCA 59.552 39.130 20.43 7.79 40.23 2.57
19 20 4.049186 CTGGCAGCTGATTTATTGCAATC 58.951 43.478 20.43 2.62 38.27 2.67
20 21 3.449737 ACTGGCAGCTGATTTATTGCAAT 59.550 39.130 20.43 17.56 38.27 3.56
21 22 2.827322 ACTGGCAGCTGATTTATTGCAA 59.173 40.909 20.43 0.00 38.27 4.08
22 23 2.449464 ACTGGCAGCTGATTTATTGCA 58.551 42.857 20.43 0.00 38.27 4.08
23 24 4.637483 TTACTGGCAGCTGATTTATTGC 57.363 40.909 20.43 0.00 35.87 3.56
24 25 7.315142 TCTTTTTACTGGCAGCTGATTTATTG 58.685 34.615 20.43 1.91 0.00 1.90
25 26 7.394359 TCTCTTTTTACTGGCAGCTGATTTATT 59.606 33.333 20.43 0.00 0.00 1.40
26 27 6.886459 TCTCTTTTTACTGGCAGCTGATTTAT 59.114 34.615 20.43 0.10 0.00 1.40
27 28 6.237901 TCTCTTTTTACTGGCAGCTGATTTA 58.762 36.000 20.43 0.00 0.00 1.40
28 29 5.072741 TCTCTTTTTACTGGCAGCTGATTT 58.927 37.500 20.43 0.00 0.00 2.17
29 30 4.655963 TCTCTTTTTACTGGCAGCTGATT 58.344 39.130 20.43 0.00 0.00 2.57
30 31 4.292186 TCTCTTTTTACTGGCAGCTGAT 57.708 40.909 20.43 1.30 0.00 2.90
31 32 3.769739 TCTCTTTTTACTGGCAGCTGA 57.230 42.857 20.43 0.00 0.00 4.26
32 33 4.836125 TTTCTCTTTTTACTGGCAGCTG 57.164 40.909 15.89 10.11 0.00 4.24
33 34 4.219288 CCATTTCTCTTTTTACTGGCAGCT 59.781 41.667 15.89 4.57 0.00 4.24
34 35 4.488879 CCATTTCTCTTTTTACTGGCAGC 58.511 43.478 15.89 0.00 0.00 5.25
35 36 4.766891 TCCCATTTCTCTTTTTACTGGCAG 59.233 41.667 14.16 14.16 0.00 4.85
36 37 4.735369 TCCCATTTCTCTTTTTACTGGCA 58.265 39.130 0.00 0.00 0.00 4.92
37 38 5.476945 TCTTCCCATTTCTCTTTTTACTGGC 59.523 40.000 0.00 0.00 0.00 4.85
38 39 6.717084 ACTCTTCCCATTTCTCTTTTTACTGG 59.283 38.462 0.00 0.00 0.00 4.00
39 40 7.445402 TCACTCTTCCCATTTCTCTTTTTACTG 59.555 37.037 0.00 0.00 0.00 2.74
40 41 7.518188 TCACTCTTCCCATTTCTCTTTTTACT 58.482 34.615 0.00 0.00 0.00 2.24
41 42 7.445707 ACTCACTCTTCCCATTTCTCTTTTTAC 59.554 37.037 0.00 0.00 0.00 2.01
42 43 7.518188 ACTCACTCTTCCCATTTCTCTTTTTA 58.482 34.615 0.00 0.00 0.00 1.52
43 44 6.368805 ACTCACTCTTCCCATTTCTCTTTTT 58.631 36.000 0.00 0.00 0.00 1.94
44 45 5.946486 ACTCACTCTTCCCATTTCTCTTTT 58.054 37.500 0.00 0.00 0.00 2.27
45 46 5.309282 AGACTCACTCTTCCCATTTCTCTTT 59.691 40.000 0.00 0.00 0.00 2.52
46 47 4.843516 AGACTCACTCTTCCCATTTCTCTT 59.156 41.667 0.00 0.00 0.00 2.85
47 48 4.424842 AGACTCACTCTTCCCATTTCTCT 58.575 43.478 0.00 0.00 0.00 3.10
48 49 4.382577 GGAGACTCACTCTTCCCATTTCTC 60.383 50.000 4.53 0.00 44.37 2.87
49 50 3.517500 GGAGACTCACTCTTCCCATTTCT 59.482 47.826 4.53 0.00 44.37 2.52
50 51 3.517500 AGGAGACTCACTCTTCCCATTTC 59.482 47.826 4.53 0.00 44.37 2.17
51 52 3.525862 AGGAGACTCACTCTTCCCATTT 58.474 45.455 4.53 0.00 44.37 2.32
52 53 3.197927 AGGAGACTCACTCTTCCCATT 57.802 47.619 4.53 0.00 44.37 3.16
53 54 2.836981 CAAGGAGACTCACTCTTCCCAT 59.163 50.000 4.53 0.00 44.37 4.00
54 55 2.251818 CAAGGAGACTCACTCTTCCCA 58.748 52.381 4.53 0.00 44.37 4.37
55 56 2.232696 GACAAGGAGACTCACTCTTCCC 59.767 54.545 4.53 0.00 44.37 3.97
56 57 3.056891 CAGACAAGGAGACTCACTCTTCC 60.057 52.174 4.53 0.00 44.37 3.46
57 58 3.056891 CCAGACAAGGAGACTCACTCTTC 60.057 52.174 4.53 0.55 44.37 2.87
58 59 2.896685 CCAGACAAGGAGACTCACTCTT 59.103 50.000 4.53 0.00 44.37 2.85
59 60 2.524306 CCAGACAAGGAGACTCACTCT 58.476 52.381 4.53 0.00 44.37 3.24
60 61 1.548269 CCCAGACAAGGAGACTCACTC 59.452 57.143 4.53 0.00 42.68 3.51
61 62 1.638529 CCCAGACAAGGAGACTCACT 58.361 55.000 4.53 0.00 42.68 3.41
62 63 0.036858 GCCCAGACAAGGAGACTCAC 60.037 60.000 4.53 0.00 42.68 3.51
63 64 0.471780 TGCCCAGACAAGGAGACTCA 60.472 55.000 4.53 0.00 42.68 3.41
64 65 0.036858 GTGCCCAGACAAGGAGACTC 60.037 60.000 0.00 0.00 42.68 3.36
66 67 0.603975 GTGTGCCCAGACAAGGAGAC 60.604 60.000 0.00 0.00 0.00 3.36
67 68 1.754745 GTGTGCCCAGACAAGGAGA 59.245 57.895 0.00 0.00 0.00 3.71
68 69 1.302832 GGTGTGCCCAGACAAGGAG 60.303 63.158 0.00 0.00 0.00 3.69
69 70 2.075566 TGGTGTGCCCAGACAAGGA 61.076 57.895 0.00 0.00 38.72 3.36
70 71 2.515398 TGGTGTGCCCAGACAAGG 59.485 61.111 0.00 0.00 38.72 3.61
78 79 0.623723 TCCCTCTAAATGGTGTGCCC 59.376 55.000 0.00 0.00 0.00 5.36
79 80 1.004277 TGTCCCTCTAAATGGTGTGCC 59.996 52.381 0.00 0.00 0.00 5.01
80 81 2.489938 TGTCCCTCTAAATGGTGTGC 57.510 50.000 0.00 0.00 0.00 4.57
81 82 5.614324 TCTATGTCCCTCTAAATGGTGTG 57.386 43.478 0.00 0.00 0.00 3.82
82 83 6.636454 TTTCTATGTCCCTCTAAATGGTGT 57.364 37.500 0.00 0.00 0.00 4.16
83 84 7.938140 TTTTTCTATGTCCCTCTAAATGGTG 57.062 36.000 0.00 0.00 0.00 4.17
117 118 5.945144 AGGCCTAGATGCAAATGATTTTT 57.055 34.783 1.29 0.00 0.00 1.94
118 119 6.131961 AGTAGGCCTAGATGCAAATGATTTT 58.868 36.000 14.38 0.00 0.00 1.82
119 120 5.699143 AGTAGGCCTAGATGCAAATGATTT 58.301 37.500 14.38 0.00 0.00 2.17
120 121 5.316158 AGTAGGCCTAGATGCAAATGATT 57.684 39.130 14.38 0.00 0.00 2.57
121 122 4.989875 AGTAGGCCTAGATGCAAATGAT 57.010 40.909 14.38 0.00 0.00 2.45
122 123 4.454678 CAAGTAGGCCTAGATGCAAATGA 58.545 43.478 14.38 0.00 0.00 2.57
123 124 3.004106 GCAAGTAGGCCTAGATGCAAATG 59.996 47.826 31.03 16.10 34.10 2.32
124 125 3.217626 GCAAGTAGGCCTAGATGCAAAT 58.782 45.455 31.03 4.41 34.10 2.32
125 126 2.643551 GCAAGTAGGCCTAGATGCAAA 58.356 47.619 31.03 4.33 34.10 3.68
126 127 1.473257 CGCAAGTAGGCCTAGATGCAA 60.473 52.381 32.97 7.66 33.55 4.08
127 128 0.104855 CGCAAGTAGGCCTAGATGCA 59.895 55.000 32.97 8.34 33.55 3.96
128 129 0.389391 TCGCAAGTAGGCCTAGATGC 59.611 55.000 28.25 28.25 39.48 3.91
129 130 3.393089 AATCGCAAGTAGGCCTAGATG 57.607 47.619 14.38 15.99 39.48 2.90
130 131 3.511934 CCTAATCGCAAGTAGGCCTAGAT 59.488 47.826 14.38 9.23 39.48 1.98
131 132 2.891580 CCTAATCGCAAGTAGGCCTAGA 59.108 50.000 14.38 6.95 39.48 2.43
132 133 2.028930 CCCTAATCGCAAGTAGGCCTAG 60.029 54.545 14.38 2.44 35.37 3.02
133 134 1.968493 CCCTAATCGCAAGTAGGCCTA 59.032 52.381 8.91 8.91 35.37 3.93
134 135 0.759346 CCCTAATCGCAAGTAGGCCT 59.241 55.000 11.78 11.78 35.37 5.19
135 136 0.250338 CCCCTAATCGCAAGTAGGCC 60.250 60.000 0.00 0.00 35.37 5.19
136 137 0.885150 GCCCCTAATCGCAAGTAGGC 60.885 60.000 0.00 0.00 35.37 3.93
137 138 0.759346 AGCCCCTAATCGCAAGTAGG 59.241 55.000 0.00 0.00 36.21 3.18
138 139 1.689273 AGAGCCCCTAATCGCAAGTAG 59.311 52.381 0.00 0.00 39.48 2.57
139 140 1.789523 AGAGCCCCTAATCGCAAGTA 58.210 50.000 0.00 0.00 39.48 2.24
140 141 0.912486 AAGAGCCCCTAATCGCAAGT 59.088 50.000 0.00 0.00 39.48 3.16
141 142 2.044123 AAAGAGCCCCTAATCGCAAG 57.956 50.000 0.00 0.00 0.00 4.01
142 143 3.637911 TTAAAGAGCCCCTAATCGCAA 57.362 42.857 0.00 0.00 0.00 4.85
143 144 3.857157 ATTAAAGAGCCCCTAATCGCA 57.143 42.857 0.00 0.00 0.00 5.10
144 145 3.883489 ACAATTAAAGAGCCCCTAATCGC 59.117 43.478 0.00 0.00 0.00 4.58
145 146 4.881850 ACACAATTAAAGAGCCCCTAATCG 59.118 41.667 0.00 0.00 0.00 3.34
146 147 6.775594 AACACAATTAAAGAGCCCCTAATC 57.224 37.500 0.00 0.00 0.00 1.75
147 148 7.839200 ACATAACACAATTAAAGAGCCCCTAAT 59.161 33.333 0.00 0.00 0.00 1.73
148 149 7.179269 ACATAACACAATTAAAGAGCCCCTAA 58.821 34.615 0.00 0.00 0.00 2.69
149 150 6.727394 ACATAACACAATTAAAGAGCCCCTA 58.273 36.000 0.00 0.00 0.00 3.53
150 151 5.580022 ACATAACACAATTAAAGAGCCCCT 58.420 37.500 0.00 0.00 0.00 4.79
151 152 5.914898 ACATAACACAATTAAAGAGCCCC 57.085 39.130 0.00 0.00 0.00 5.80
152 153 9.869757 ATTAAACATAACACAATTAAAGAGCCC 57.130 29.630 0.00 0.00 0.00 5.19
193 194 9.315363 TGGTTATCCTAAAGCTGGATTTAAAAA 57.685 29.630 9.21 0.00 41.13 1.94
194 195 8.887264 TGGTTATCCTAAAGCTGGATTTAAAA 57.113 30.769 9.21 0.00 41.13 1.52
195 196 8.887264 TTGGTTATCCTAAAGCTGGATTTAAA 57.113 30.769 9.21 0.00 41.13 1.52
196 197 7.068226 GCTTGGTTATCCTAAAGCTGGATTTAA 59.932 37.037 9.21 0.00 41.13 1.52
197 198 6.546034 GCTTGGTTATCCTAAAGCTGGATTTA 59.454 38.462 9.21 0.00 41.13 1.40
198 199 5.360999 GCTTGGTTATCCTAAAGCTGGATTT 59.639 40.000 9.21 0.00 41.13 2.17
199 200 4.889995 GCTTGGTTATCCTAAAGCTGGATT 59.110 41.667 9.21 0.00 41.13 3.01
200 201 4.166919 AGCTTGGTTATCCTAAAGCTGGAT 59.833 41.667 13.83 8.94 45.33 3.41
201 202 3.523564 AGCTTGGTTATCCTAAAGCTGGA 59.476 43.478 13.83 0.00 45.33 3.86
202 203 3.891049 AGCTTGGTTATCCTAAAGCTGG 58.109 45.455 13.83 0.00 45.33 4.85
203 204 5.649831 AGAAAGCTTGGTTATCCTAAAGCTG 59.350 40.000 14.85 0.00 45.90 4.24
205 206 5.066634 GGAGAAAGCTTGGTTATCCTAAAGC 59.933 44.000 0.00 6.75 40.71 3.51
206 207 6.180472 TGGAGAAAGCTTGGTTATCCTAAAG 58.820 40.000 10.75 0.00 37.29 1.85
207 208 6.012858 TCTGGAGAAAGCTTGGTTATCCTAAA 60.013 38.462 10.75 0.00 37.29 1.85
208 209 5.487488 TCTGGAGAAAGCTTGGTTATCCTAA 59.513 40.000 10.75 0.00 37.29 2.69
209 210 5.030147 TCTGGAGAAAGCTTGGTTATCCTA 58.970 41.667 10.75 0.00 37.29 2.94
210 211 3.846588 TCTGGAGAAAGCTTGGTTATCCT 59.153 43.478 10.75 0.00 37.29 3.24
211 212 4.222124 TCTGGAGAAAGCTTGGTTATCC 57.778 45.455 0.00 0.94 36.98 2.59
212 213 5.067023 CCAATCTGGAGAAAGCTTGGTTATC 59.933 44.000 0.00 0.00 40.96 1.75
213 214 4.952335 CCAATCTGGAGAAAGCTTGGTTAT 59.048 41.667 0.00 0.00 40.96 1.89
214 215 4.335416 CCAATCTGGAGAAAGCTTGGTTA 58.665 43.478 0.00 0.00 40.96 2.85
215 216 3.160269 CCAATCTGGAGAAAGCTTGGTT 58.840 45.455 0.00 0.00 40.96 3.67
216 217 2.108952 ACCAATCTGGAGAAAGCTTGGT 59.891 45.455 0.00 6.63 46.71 3.67
217 218 2.490903 CACCAATCTGGAGAAAGCTTGG 59.509 50.000 0.00 5.50 45.12 3.61
218 219 3.190118 GTCACCAATCTGGAGAAAGCTTG 59.810 47.826 0.00 0.00 40.96 4.01
219 220 3.181440 TGTCACCAATCTGGAGAAAGCTT 60.181 43.478 0.00 0.00 40.96 3.74
220 221 2.373169 TGTCACCAATCTGGAGAAAGCT 59.627 45.455 0.00 0.00 40.96 3.74
221 222 2.485814 GTGTCACCAATCTGGAGAAAGC 59.514 50.000 0.00 0.00 40.96 3.51
222 223 3.077359 GGTGTCACCAATCTGGAGAAAG 58.923 50.000 17.59 0.00 40.96 2.62
223 224 2.549992 CGGTGTCACCAATCTGGAGAAA 60.550 50.000 21.91 0.00 40.96 2.52
224 225 1.001974 CGGTGTCACCAATCTGGAGAA 59.998 52.381 21.91 0.00 40.96 2.87
225 226 0.608130 CGGTGTCACCAATCTGGAGA 59.392 55.000 21.91 0.00 40.96 3.71
226 227 0.391661 CCGGTGTCACCAATCTGGAG 60.392 60.000 21.91 2.75 40.96 3.86
227 228 1.125093 ACCGGTGTCACCAATCTGGA 61.125 55.000 21.91 0.00 40.96 3.86
228 229 0.955428 CACCGGTGTCACCAATCTGG 60.955 60.000 26.95 15.74 45.02 3.86
229 230 0.955428 CCACCGGTGTCACCAATCTG 60.955 60.000 31.80 9.70 38.47 2.90
230 231 1.125093 TCCACCGGTGTCACCAATCT 61.125 55.000 31.80 0.00 38.47 2.40
231 232 0.035439 ATCCACCGGTGTCACCAATC 60.035 55.000 31.80 0.00 38.47 2.67
232 233 0.322456 CATCCACCGGTGTCACCAAT 60.322 55.000 31.80 12.80 38.47 3.16
233 234 1.072332 CATCCACCGGTGTCACCAA 59.928 57.895 31.80 11.11 38.47 3.67
234 235 0.832559 TACATCCACCGGTGTCACCA 60.833 55.000 31.80 12.19 38.47 4.17
235 236 0.539986 ATACATCCACCGGTGTCACC 59.460 55.000 31.80 12.40 34.05 4.02
236 237 2.277084 GAATACATCCACCGGTGTCAC 58.723 52.381 31.80 11.06 0.00 3.67
237 238 1.903183 TGAATACATCCACCGGTGTCA 59.097 47.619 31.80 23.09 0.00 3.58
238 239 2.684001 TGAATACATCCACCGGTGTC 57.316 50.000 31.80 20.85 0.00 3.67
239 240 4.560716 CGATATGAATACATCCACCGGTGT 60.561 45.833 31.80 16.80 37.87 4.16
240 241 3.926527 CGATATGAATACATCCACCGGTG 59.073 47.826 28.26 28.26 37.87 4.94
241 242 3.616560 GCGATATGAATACATCCACCGGT 60.617 47.826 0.00 0.00 37.87 5.28
242 243 2.930040 GCGATATGAATACATCCACCGG 59.070 50.000 0.00 0.00 37.87 5.28
243 244 2.930040 GGCGATATGAATACATCCACCG 59.070 50.000 0.00 0.00 37.87 4.94
244 245 3.935203 CAGGCGATATGAATACATCCACC 59.065 47.826 0.00 0.00 37.87 4.61
245 246 3.935203 CCAGGCGATATGAATACATCCAC 59.065 47.826 0.00 0.00 37.87 4.02
246 247 3.619733 GCCAGGCGATATGAATACATCCA 60.620 47.826 0.00 0.00 37.87 3.41
247 248 2.939103 GCCAGGCGATATGAATACATCC 59.061 50.000 0.00 0.00 37.87 3.51
248 249 3.599343 TGCCAGGCGATATGAATACATC 58.401 45.455 7.03 0.00 37.87 3.06
249 250 3.701205 TGCCAGGCGATATGAATACAT 57.299 42.857 7.03 0.00 40.16 2.29
250 251 3.402110 CTTGCCAGGCGATATGAATACA 58.598 45.455 7.03 0.00 0.00 2.29
251 252 2.160417 GCTTGCCAGGCGATATGAATAC 59.840 50.000 7.03 0.00 0.00 1.89
252 253 2.426522 GCTTGCCAGGCGATATGAATA 58.573 47.619 7.03 0.00 0.00 1.75
253 254 1.242076 GCTTGCCAGGCGATATGAAT 58.758 50.000 7.03 0.00 0.00 2.57
254 255 2.706636 GCTTGCCAGGCGATATGAA 58.293 52.632 7.03 0.00 0.00 2.57
255 256 4.462394 GCTTGCCAGGCGATATGA 57.538 55.556 7.03 0.00 0.00 2.15
262 263 2.974698 ATATCGCGCTTGCCAGGC 60.975 61.111 3.66 3.66 34.11 4.85
263 264 2.941333 CATATCGCGCTTGCCAGG 59.059 61.111 5.56 0.00 34.11 4.45
264 265 2.250485 GCATATCGCGCTTGCCAG 59.750 61.111 5.56 0.00 34.11 4.85
273 274 4.349663 TTGGTTTGTGTTAGCATATCGC 57.650 40.909 0.00 0.00 42.91 4.58
274 275 5.799936 CCTTTTGGTTTGTGTTAGCATATCG 59.200 40.000 0.00 0.00 34.07 2.92
275 276 6.071616 TCCCTTTTGGTTTGTGTTAGCATATC 60.072 38.462 0.00 0.00 38.10 1.63
276 277 5.777732 TCCCTTTTGGTTTGTGTTAGCATAT 59.222 36.000 0.00 0.00 38.10 1.78
277 278 5.141182 TCCCTTTTGGTTTGTGTTAGCATA 58.859 37.500 0.00 0.00 38.10 3.14
278 279 3.964031 TCCCTTTTGGTTTGTGTTAGCAT 59.036 39.130 0.00 0.00 38.10 3.79
279 280 3.366396 TCCCTTTTGGTTTGTGTTAGCA 58.634 40.909 0.00 0.00 38.10 3.49
280 281 4.098807 TCTTCCCTTTTGGTTTGTGTTAGC 59.901 41.667 0.00 0.00 38.10 3.09
281 282 5.845391 TCTTCCCTTTTGGTTTGTGTTAG 57.155 39.130 0.00 0.00 38.10 2.34
282 283 5.952947 TCTTCTTCCCTTTTGGTTTGTGTTA 59.047 36.000 0.00 0.00 38.10 2.41
283 284 4.775253 TCTTCTTCCCTTTTGGTTTGTGTT 59.225 37.500 0.00 0.00 38.10 3.32
284 285 4.349365 TCTTCTTCCCTTTTGGTTTGTGT 58.651 39.130 0.00 0.00 38.10 3.72
285 286 4.644685 TCTCTTCTTCCCTTTTGGTTTGTG 59.355 41.667 0.00 0.00 38.10 3.33
286 287 4.867086 TCTCTTCTTCCCTTTTGGTTTGT 58.133 39.130 0.00 0.00 38.10 2.83
287 288 4.889995 ACTCTCTTCTTCCCTTTTGGTTTG 59.110 41.667 0.00 0.00 38.10 2.93
288 289 5.103898 AGACTCTCTTCTTCCCTTTTGGTTT 60.104 40.000 0.00 0.00 38.10 3.27
289 290 4.413851 AGACTCTCTTCTTCCCTTTTGGTT 59.586 41.667 0.00 0.00 38.10 3.67
290 291 3.977326 AGACTCTCTTCTTCCCTTTTGGT 59.023 43.478 0.00 0.00 38.10 3.67
291 292 4.632327 AGACTCTCTTCTTCCCTTTTGG 57.368 45.455 0.00 0.00 39.97 3.28
292 293 4.759183 CCAAGACTCTCTTCTTCCCTTTTG 59.241 45.833 0.00 0.00 33.78 2.44
293 294 4.660771 TCCAAGACTCTCTTCTTCCCTTTT 59.339 41.667 0.00 0.00 33.78 2.27
294 295 4.235372 TCCAAGACTCTCTTCTTCCCTTT 58.765 43.478 0.00 0.00 33.78 3.11
295 296 3.863086 TCCAAGACTCTCTTCTTCCCTT 58.137 45.455 0.00 0.00 33.78 3.95
296 297 3.551635 TCCAAGACTCTCTTCTTCCCT 57.448 47.619 0.00 0.00 33.78 4.20
297 298 4.019771 ACAATCCAAGACTCTCTTCTTCCC 60.020 45.833 0.00 0.00 33.78 3.97
298 299 5.159273 ACAATCCAAGACTCTCTTCTTCC 57.841 43.478 0.00 0.00 33.78 3.46
299 300 6.463360 AGAACAATCCAAGACTCTCTTCTTC 58.537 40.000 0.00 0.00 33.78 2.87
300 301 6.432403 AGAACAATCCAAGACTCTCTTCTT 57.568 37.500 0.00 0.00 33.78 2.52
301 302 6.183361 ACAAGAACAATCCAAGACTCTCTTCT 60.183 38.462 0.00 0.00 33.78 2.85
302 303 5.994668 ACAAGAACAATCCAAGACTCTCTTC 59.005 40.000 0.00 0.00 33.78 2.87
303 304 5.934781 ACAAGAACAATCCAAGACTCTCTT 58.065 37.500 0.00 0.00 37.14 2.85
304 305 5.306678 AGACAAGAACAATCCAAGACTCTCT 59.693 40.000 0.00 0.00 0.00 3.10
305 306 5.546526 AGACAAGAACAATCCAAGACTCTC 58.453 41.667 0.00 0.00 0.00 3.20
306 307 5.559148 AGACAAGAACAATCCAAGACTCT 57.441 39.130 0.00 0.00 0.00 3.24
307 308 6.433766 CAAAGACAAGAACAATCCAAGACTC 58.566 40.000 0.00 0.00 0.00 3.36
308 309 5.300286 CCAAAGACAAGAACAATCCAAGACT 59.700 40.000 0.00 0.00 0.00 3.24
309 310 5.299279 TCCAAAGACAAGAACAATCCAAGAC 59.701 40.000 0.00 0.00 0.00 3.01
310 311 5.445069 TCCAAAGACAAGAACAATCCAAGA 58.555 37.500 0.00 0.00 0.00 3.02
311 312 5.772825 TCCAAAGACAAGAACAATCCAAG 57.227 39.130 0.00 0.00 0.00 3.61
312 313 6.537453 TTTCCAAAGACAAGAACAATCCAA 57.463 33.333 0.00 0.00 0.00 3.53
313 314 5.451798 GCTTTCCAAAGACAAGAACAATCCA 60.452 40.000 3.11 0.00 38.28 3.41
314 315 4.984785 GCTTTCCAAAGACAAGAACAATCC 59.015 41.667 3.11 0.00 38.28 3.01
315 316 4.984785 GGCTTTCCAAAGACAAGAACAATC 59.015 41.667 3.11 0.00 43.66 2.67
316 317 4.948847 GGCTTTCCAAAGACAAGAACAAT 58.051 39.130 3.11 0.00 43.66 2.71
317 318 4.385358 GGCTTTCCAAAGACAAGAACAA 57.615 40.909 3.11 0.00 43.66 2.83
338 339 1.085893 TGTGCGCATCAACCAGTATG 58.914 50.000 15.91 0.00 0.00 2.39
339 340 1.739466 CTTGTGCGCATCAACCAGTAT 59.261 47.619 15.91 0.00 0.00 2.12
340 341 1.155889 CTTGTGCGCATCAACCAGTA 58.844 50.000 15.91 0.00 0.00 2.74
341 342 0.534877 TCTTGTGCGCATCAACCAGT 60.535 50.000 15.91 0.00 0.00 4.00
342 343 0.806868 ATCTTGTGCGCATCAACCAG 59.193 50.000 15.91 8.43 0.00 4.00
343 344 1.246649 AATCTTGTGCGCATCAACCA 58.753 45.000 15.91 2.70 0.00 3.67
344 345 3.119849 ACTTAATCTTGTGCGCATCAACC 60.120 43.478 15.91 0.00 0.00 3.77
345 346 4.083581 ACTTAATCTTGTGCGCATCAAC 57.916 40.909 15.91 0.00 0.00 3.18
346 347 4.201676 CGTACTTAATCTTGTGCGCATCAA 60.202 41.667 15.91 18.25 35.80 2.57
347 348 3.305897 CGTACTTAATCTTGTGCGCATCA 59.694 43.478 15.91 11.26 35.80 3.07
348 349 3.550275 TCGTACTTAATCTTGTGCGCATC 59.450 43.478 15.91 8.33 40.89 3.91
352 353 3.863424 ACCATCGTACTTAATCTTGTGCG 59.137 43.478 0.00 0.00 42.07 5.34
368 369 2.668279 GCAAACAGGCTGTAAACCATCG 60.668 50.000 22.37 4.56 0.00 3.84
490 491 8.321353 TCATAAATATTTGGCGATAGATGGAGT 58.679 33.333 11.05 0.00 39.76 3.85
499 500 7.594758 CGTTTGGATTCATAAATATTTGGCGAT 59.405 33.333 11.05 0.58 0.00 4.58
509 510 4.466015 ACCTTGCCGTTTGGATTCATAAAT 59.534 37.500 0.00 0.00 37.49 1.40
510 511 3.829601 ACCTTGCCGTTTGGATTCATAAA 59.170 39.130 0.00 0.00 37.49 1.40
516 517 1.995376 AAGACCTTGCCGTTTGGATT 58.005 45.000 0.00 0.00 37.49 3.01
571 572 0.885196 TTTCTGGCCGTACATTTGCC 59.115 50.000 0.00 5.92 45.56 4.52
610 612 7.947890 AGGGTGAGTTTCTGTTTGGATTTAATA 59.052 33.333 0.00 0.00 0.00 0.98
957 964 4.154347 GACCAGCAGAGCGGGAGG 62.154 72.222 14.91 3.61 46.43 4.30
975 982 3.071206 AGATGGCAGCGTCGACCT 61.071 61.111 10.58 5.32 0.00 3.85
977 984 3.558411 GCAGATGGCAGCGTCGAC 61.558 66.667 5.18 5.18 43.97 4.20
986 993 2.441532 ACATGGCAGGCAGATGGC 60.442 61.111 1.89 0.00 45.50 4.40
987 994 2.125326 CCACATGGCAGGCAGATGG 61.125 63.158 13.26 13.26 0.00 3.51
988 995 2.125326 CCCACATGGCAGGCAGATG 61.125 63.158 1.89 3.01 0.00 2.90
989 996 2.277737 CCCACATGGCAGGCAGAT 59.722 61.111 1.89 0.00 0.00 2.90
1309 1319 2.397252 GCGTCGTCATGCTCTTGC 59.603 61.111 0.00 0.00 40.20 4.01
1310 1320 2.691522 CGCGTCGTCATGCTCTTG 59.308 61.111 0.00 0.00 31.59 3.02
1311 1321 3.181967 GCGCGTCGTCATGCTCTT 61.182 61.111 8.43 0.00 31.59 2.85
1486 1515 4.394920 ACAGCACAAGAATATTTACACCCG 59.605 41.667 0.00 0.00 0.00 5.28
1506 1535 8.532977 TGTTTTCTTTTTCTTTTGGAGAACAG 57.467 30.769 0.00 0.00 43.90 3.16
1513 1542 5.065090 CCCTGCTGTTTTCTTTTTCTTTTGG 59.935 40.000 0.00 0.00 0.00 3.28
1515 1544 5.185454 CCCCTGCTGTTTTCTTTTTCTTTT 58.815 37.500 0.00 0.00 0.00 2.27
1519 1548 3.819564 ACCCCTGCTGTTTTCTTTTTC 57.180 42.857 0.00 0.00 0.00 2.29
1520 1549 3.263170 ACAACCCCTGCTGTTTTCTTTTT 59.737 39.130 0.00 0.00 0.00 1.94
1562 1592 8.842358 ACGAACTTGTTCTGAATTTAATAGGA 57.158 30.769 11.11 0.00 0.00 2.94
1563 1593 8.175716 GGACGAACTTGTTCTGAATTTAATAGG 58.824 37.037 11.11 0.00 0.00 2.57
1564 1594 8.936864 AGGACGAACTTGTTCTGAATTTAATAG 58.063 33.333 11.11 0.00 0.00 1.73
1565 1595 8.842358 AGGACGAACTTGTTCTGAATTTAATA 57.158 30.769 11.11 0.00 0.00 0.98
1567 1597 7.562454 AAGGACGAACTTGTTCTGAATTTAA 57.438 32.000 11.11 0.00 0.00 1.52
1575 1626 9.893305 CAAAATTAATAAGGACGAACTTGTTCT 57.107 29.630 11.11 0.00 34.34 3.01
1586 1637 7.640597 AGCTACACCCAAAATTAATAAGGAC 57.359 36.000 0.00 0.00 0.00 3.85
1589 1640 8.747538 ACCTAGCTACACCCAAAATTAATAAG 57.252 34.615 0.00 0.00 0.00 1.73
1590 1641 8.554011 AGACCTAGCTACACCCAAAATTAATAA 58.446 33.333 0.00 0.00 0.00 1.40
1591 1642 8.097791 AGACCTAGCTACACCCAAAATTAATA 57.902 34.615 0.00 0.00 0.00 0.98
1592 1643 6.970191 AGACCTAGCTACACCCAAAATTAAT 58.030 36.000 0.00 0.00 0.00 1.40
1593 1644 6.013206 TGAGACCTAGCTACACCCAAAATTAA 60.013 38.462 0.00 0.00 0.00 1.40
1594 1645 5.486063 TGAGACCTAGCTACACCCAAAATTA 59.514 40.000 0.00 0.00 0.00 1.40
1595 1646 4.288626 TGAGACCTAGCTACACCCAAAATT 59.711 41.667 0.00 0.00 0.00 1.82
1596 1647 3.844211 TGAGACCTAGCTACACCCAAAAT 59.156 43.478 0.00 0.00 0.00 1.82
1597 1648 3.244582 TGAGACCTAGCTACACCCAAAA 58.755 45.455 0.00 0.00 0.00 2.44
1598 1649 2.832129 CTGAGACCTAGCTACACCCAAA 59.168 50.000 0.00 0.00 0.00 3.28
1599 1650 2.225293 ACTGAGACCTAGCTACACCCAA 60.225 50.000 0.00 0.00 0.00 4.12
1600 1651 1.358103 ACTGAGACCTAGCTACACCCA 59.642 52.381 0.00 0.00 0.00 4.51
1601 1652 2.025898 GACTGAGACCTAGCTACACCC 58.974 57.143 0.00 0.00 0.00 4.61
1602 1653 1.671845 CGACTGAGACCTAGCTACACC 59.328 57.143 0.00 0.00 0.00 4.16
1603 1654 2.352342 GTCGACTGAGACCTAGCTACAC 59.648 54.545 8.70 0.00 35.22 2.90
1604 1655 2.236644 AGTCGACTGAGACCTAGCTACA 59.763 50.000 19.30 0.00 41.83 2.74
1605 1656 2.610374 CAGTCGACTGAGACCTAGCTAC 59.390 54.545 36.73 0.00 46.59 3.58
1606 1657 2.907634 CAGTCGACTGAGACCTAGCTA 58.092 52.381 36.73 0.00 46.59 3.32
1607 1658 1.745232 CAGTCGACTGAGACCTAGCT 58.255 55.000 36.73 0.00 46.59 3.32
1616 1667 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
1617 1668 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
1618 1669 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
1619 1670 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
1698 1749 7.434897 TCTTTAATTTTGCATGGATATTCGTGC 59.565 33.333 19.75 19.75 46.61 5.34
1699 1750 8.854979 TCTTTAATTTTGCATGGATATTCGTG 57.145 30.769 0.00 0.00 0.00 4.35
1700 1751 9.868277 TTTCTTTAATTTTGCATGGATATTCGT 57.132 25.926 0.00 0.00 0.00 3.85
1719 1770 9.392259 TGTCTCAGTCGATAGTATCTTTCTTTA 57.608 33.333 8.49 0.00 37.40 1.85
1720 1771 8.282455 TGTCTCAGTCGATAGTATCTTTCTTT 57.718 34.615 8.49 0.00 37.40 2.52
1721 1772 7.867305 TGTCTCAGTCGATAGTATCTTTCTT 57.133 36.000 8.49 0.00 37.40 2.52
1722 1773 9.562408 TTATGTCTCAGTCGATAGTATCTTTCT 57.438 33.333 8.49 1.64 37.40 2.52
1723 1774 9.601971 GTTATGTCTCAGTCGATAGTATCTTTC 57.398 37.037 8.49 0.00 37.40 2.62
1724 1775 8.283992 CGTTATGTCTCAGTCGATAGTATCTTT 58.716 37.037 8.49 0.00 37.40 2.52
1725 1776 7.656542 TCGTTATGTCTCAGTCGATAGTATCTT 59.343 37.037 8.49 0.00 37.40 2.40
1726 1777 7.153315 TCGTTATGTCTCAGTCGATAGTATCT 58.847 38.462 8.49 0.00 37.40 1.98
1727 1778 7.348808 TCGTTATGTCTCAGTCGATAGTATC 57.651 40.000 0.00 0.00 37.40 2.24
1728 1779 7.441760 ACTTCGTTATGTCTCAGTCGATAGTAT 59.558 37.037 0.00 0.00 37.40 2.12
1729 1780 6.760298 ACTTCGTTATGTCTCAGTCGATAGTA 59.240 38.462 0.00 0.00 37.40 1.82
1730 1781 5.585445 ACTTCGTTATGTCTCAGTCGATAGT 59.415 40.000 0.00 0.00 37.40 2.12
1731 1782 6.018588 AGACTTCGTTATGTCTCAGTCGATAG 60.019 42.308 0.00 0.00 39.04 2.08
1732 1783 5.816258 AGACTTCGTTATGTCTCAGTCGATA 59.184 40.000 0.00 0.00 39.04 2.92
1733 1784 4.636648 AGACTTCGTTATGTCTCAGTCGAT 59.363 41.667 0.00 0.00 39.04 3.59
1734 1785 4.001652 AGACTTCGTTATGTCTCAGTCGA 58.998 43.478 0.00 0.00 39.04 4.20
1735 1786 4.343811 AGACTTCGTTATGTCTCAGTCG 57.656 45.455 0.00 0.00 39.04 4.18
1736 1787 6.844254 ACTTAGACTTCGTTATGTCTCAGTC 58.156 40.000 0.00 0.00 41.23 3.51
1737 1788 6.402334 CGACTTAGACTTCGTTATGTCTCAGT 60.402 42.308 8.97 8.97 45.06 3.41
1738 1789 5.960683 CGACTTAGACTTCGTTATGTCTCAG 59.039 44.000 0.00 0.00 41.92 3.35
1739 1790 5.640783 TCGACTTAGACTTCGTTATGTCTCA 59.359 40.000 0.00 0.00 41.92 3.27
1740 1791 5.958949 GTCGACTTAGACTTCGTTATGTCTC 59.041 44.000 8.70 0.00 41.92 3.36
1741 1792 5.867166 GTCGACTTAGACTTCGTTATGTCT 58.133 41.667 8.70 0.00 44.56 3.41
1758 1809 4.038162 AGTTTTGCTAAGTCTCAGTCGACT 59.962 41.667 13.58 13.58 45.73 4.18
1759 1810 4.149046 CAGTTTTGCTAAGTCTCAGTCGAC 59.851 45.833 7.70 7.70 0.00 4.20
1760 1811 4.037565 TCAGTTTTGCTAAGTCTCAGTCGA 59.962 41.667 0.00 0.00 0.00 4.20
1761 1812 4.299155 TCAGTTTTGCTAAGTCTCAGTCG 58.701 43.478 0.00 0.00 0.00 4.18
1762 1813 6.793492 AATCAGTTTTGCTAAGTCTCAGTC 57.207 37.500 0.00 0.00 0.00 3.51
1763 1814 8.854614 ATTAATCAGTTTTGCTAAGTCTCAGT 57.145 30.769 0.00 0.00 0.00 3.41
1771 1822 9.337091 GCGTAGAAAATTAATCAGTTTTGCTAA 57.663 29.630 0.00 0.00 0.00 3.09
1772 1823 8.726988 AGCGTAGAAAATTAATCAGTTTTGCTA 58.273 29.630 0.00 0.00 0.00 3.49
1773 1824 7.593825 AGCGTAGAAAATTAATCAGTTTTGCT 58.406 30.769 0.00 0.00 0.00 3.91
1774 1825 7.008357 GGAGCGTAGAAAATTAATCAGTTTTGC 59.992 37.037 0.00 0.00 0.00 3.68
1775 1826 8.020819 TGGAGCGTAGAAAATTAATCAGTTTTG 58.979 33.333 0.00 0.00 0.00 2.44
1776 1827 8.106247 TGGAGCGTAGAAAATTAATCAGTTTT 57.894 30.769 0.00 0.00 0.00 2.43
1777 1828 7.681939 TGGAGCGTAGAAAATTAATCAGTTT 57.318 32.000 0.00 0.00 0.00 2.66
1778 1829 7.681939 TTGGAGCGTAGAAAATTAATCAGTT 57.318 32.000 0.00 0.00 0.00 3.16
1779 1830 7.681939 TTTGGAGCGTAGAAAATTAATCAGT 57.318 32.000 0.00 0.00 0.00 3.41
1907 2104 8.810652 TCAAAACAAGCCAACAAAGTAATATC 57.189 30.769 0.00 0.00 0.00 1.63
1929 2136 2.223735 ACGCGACTCTGAAAGACTTCAA 60.224 45.455 15.93 0.00 41.05 2.69
1930 2137 1.337071 ACGCGACTCTGAAAGACTTCA 59.663 47.619 15.93 0.00 38.67 3.02
1931 2138 1.980156 GACGCGACTCTGAAAGACTTC 59.020 52.381 15.93 0.00 38.67 3.01
1933 2140 1.240256 AGACGCGACTCTGAAAGACT 58.760 50.000 15.93 0.00 38.67 3.24
1934 2141 2.476519 CCTAGACGCGACTCTGAAAGAC 60.477 54.545 15.93 0.00 38.67 3.01
1939 2146 0.748367 ATGCCTAGACGCGACTCTGA 60.748 55.000 15.93 0.00 0.00 3.27
1948 2155 8.589335 ACACTGTTTATAATAATGCCTAGACG 57.411 34.615 0.00 0.00 0.00 4.18
1975 2182 4.792068 CAAAAGCATCCCAGGGACTAATA 58.208 43.478 11.70 0.00 36.02 0.98
1976 2183 3.635591 CAAAAGCATCCCAGGGACTAAT 58.364 45.455 11.70 0.00 36.02 1.73
1979 2186 0.613012 GCAAAAGCATCCCAGGGACT 60.613 55.000 11.70 0.46 43.88 3.85
1980 2187 1.893062 GCAAAAGCATCCCAGGGAC 59.107 57.895 11.70 0.00 32.98 4.46
1984 2191 0.318120 AAACCGCAAAAGCATCCCAG 59.682 50.000 0.00 0.00 0.00 4.45
1999 2206 0.963225 ACAATGGTACCGGCAAAACC 59.037 50.000 7.57 5.00 0.00 3.27
2000 2207 1.400500 CGACAATGGTACCGGCAAAAC 60.400 52.381 7.57 0.00 0.00 2.43
2039 2246 7.959651 AGCGCTCAAATATCAAATAATTCGATC 59.040 33.333 2.64 0.00 0.00 3.69
2110 2321 2.583143 AGTAGCAAACACTCCCCAAAC 58.417 47.619 0.00 0.00 0.00 2.93
2111 2322 4.440826 TTAGTAGCAAACACTCCCCAAA 57.559 40.909 0.00 0.00 0.00 3.28
2165 2376 7.281999 TGTTGATGCGTTATCCATAGATTTTCA 59.718 33.333 0.42 0.00 34.77 2.69
2167 2378 7.417612 GTGTTGATGCGTTATCCATAGATTTT 58.582 34.615 0.42 0.00 34.77 1.82
2235 2446 1.231958 TTTGCAAAGTCCGGCCGTAG 61.232 55.000 26.12 10.11 0.00 3.51
2238 2449 1.154035 GATTTGCAAAGTCCGGCCG 60.154 57.895 21.04 21.04 0.00 6.13
2240 2451 4.889427 GGATTTGCAAAGTCCGGC 57.111 55.556 18.19 2.72 43.07 6.13
2244 2455 2.519013 AGGGACTGGATTTGCAAAGTC 58.481 47.619 18.19 17.58 37.18 3.01
2249 2460 3.433031 CCGTATAAGGGACTGGATTTGCA 60.433 47.826 0.00 0.00 40.86 4.08
2250 2461 3.139077 CCGTATAAGGGACTGGATTTGC 58.861 50.000 0.00 0.00 40.86 3.68
2259 2470 1.068585 CCACGGCCGTATAAGGGAC 59.931 63.158 33.70 0.00 0.00 4.46
2260 2471 1.076118 TCCACGGCCGTATAAGGGA 60.076 57.895 33.70 29.02 0.00 4.20
2261 2472 1.068585 GTCCACGGCCGTATAAGGG 59.931 63.158 33.70 27.10 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.