Multiple sequence alignment - TraesCS2D01G405100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G405100 chr2D 100.000 2975 0 0 1 2975 520042364 520045338 0.000000e+00 5494.0
1 TraesCS2D01G405100 chr2D 89.775 2308 136 35 714 2975 260867194 260864941 0.000000e+00 2863.0
2 TraesCS2D01G405100 chr2D 92.046 1911 105 17 726 2619 451467953 451469833 0.000000e+00 2643.0
3 TraesCS2D01G405100 chr2D 92.146 1617 90 7 722 2336 35331899 35330318 0.000000e+00 2248.0
4 TraesCS2D01G405100 chr2D 93.733 1500 74 4 721 2201 613419782 613421280 0.000000e+00 2231.0
5 TraesCS2D01G405100 chr2D 96.364 385 14 0 2591 2975 35330085 35329701 4.180000e-178 634.0
6 TraesCS2D01G405100 chr6A 94.105 2256 107 11 722 2975 144491473 144493704 0.000000e+00 3406.0
7 TraesCS2D01G405100 chr6A 91.792 2266 107 32 719 2975 596355511 596357706 0.000000e+00 3081.0
8 TraesCS2D01G405100 chr7A 93.531 2257 122 9 721 2975 471263891 471261657 0.000000e+00 3338.0
9 TraesCS2D01G405100 chr7D 93.084 2270 104 26 726 2975 151511976 151514212 0.000000e+00 3273.0
10 TraesCS2D01G405100 chr6B 92.113 2257 136 12 721 2975 494076434 494078650 0.000000e+00 3144.0
11 TraesCS2D01G405100 chr6B 93.970 597 24 3 2391 2975 28119099 28119695 0.000000e+00 893.0
12 TraesCS2D01G405100 chr2A 90.137 2271 116 31 716 2975 673357594 673359767 0.000000e+00 2854.0
13 TraesCS2D01G405100 chr3A 90.100 1899 107 23 723 2612 478913597 478915423 0.000000e+00 2390.0
14 TraesCS2D01G405100 chr6D 92.522 1511 91 5 722 2212 114017560 114016052 0.000000e+00 2145.0
15 TraesCS2D01G405100 chr5B 92.191 1511 94 8 720 2209 260234930 260236437 0.000000e+00 2115.0
16 TraesCS2D01G405100 chr2B 96.060 736 18 2 1 725 612067779 612068514 0.000000e+00 1188.0
17 TraesCS2D01G405100 chr2B 96.736 674 11 2 63 725 612074157 612074830 0.000000e+00 1112.0
18 TraesCS2D01G405100 chr5A 91.483 634 39 10 2342 2975 407701466 407702084 0.000000e+00 857.0
19 TraesCS2D01G405100 chr5D 93.923 362 10 2 2624 2975 26958056 26957697 1.210000e-148 536.0
20 TraesCS2D01G405100 chr1D 88.046 435 40 8 52 478 397080832 397080402 3.420000e-139 505.0
21 TraesCS2D01G405100 chr1A 87.586 435 42 8 52 478 494450990 494450560 7.410000e-136 494.0
22 TraesCS2D01G405100 chr1A 97.436 39 1 0 522 560 494448294 494448332 1.910000e-07 67.6
23 TraesCS2D01G405100 chr1B 86.897 435 45 8 52 478 532173357 532172927 7.460000e-131 477.0
24 TraesCS2D01G405100 chr1B 97.436 39 1 0 522 560 532170688 532170726 1.910000e-07 67.6
25 TraesCS2D01G405100 chr3B 89.302 215 14 6 721 932 434229099 434228891 8.180000e-66 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G405100 chr2D 520042364 520045338 2974 False 5494 5494 100.000 1 2975 1 chr2D.!!$F2 2974
1 TraesCS2D01G405100 chr2D 260864941 260867194 2253 True 2863 2863 89.775 714 2975 1 chr2D.!!$R1 2261
2 TraesCS2D01G405100 chr2D 451467953 451469833 1880 False 2643 2643 92.046 726 2619 1 chr2D.!!$F1 1893
3 TraesCS2D01G405100 chr2D 613419782 613421280 1498 False 2231 2231 93.733 721 2201 1 chr2D.!!$F3 1480
4 TraesCS2D01G405100 chr2D 35329701 35331899 2198 True 1441 2248 94.255 722 2975 2 chr2D.!!$R2 2253
5 TraesCS2D01G405100 chr6A 144491473 144493704 2231 False 3406 3406 94.105 722 2975 1 chr6A.!!$F1 2253
6 TraesCS2D01G405100 chr6A 596355511 596357706 2195 False 3081 3081 91.792 719 2975 1 chr6A.!!$F2 2256
7 TraesCS2D01G405100 chr7A 471261657 471263891 2234 True 3338 3338 93.531 721 2975 1 chr7A.!!$R1 2254
8 TraesCS2D01G405100 chr7D 151511976 151514212 2236 False 3273 3273 93.084 726 2975 1 chr7D.!!$F1 2249
9 TraesCS2D01G405100 chr6B 494076434 494078650 2216 False 3144 3144 92.113 721 2975 1 chr6B.!!$F2 2254
10 TraesCS2D01G405100 chr6B 28119099 28119695 596 False 893 893 93.970 2391 2975 1 chr6B.!!$F1 584
11 TraesCS2D01G405100 chr2A 673357594 673359767 2173 False 2854 2854 90.137 716 2975 1 chr2A.!!$F1 2259
12 TraesCS2D01G405100 chr3A 478913597 478915423 1826 False 2390 2390 90.100 723 2612 1 chr3A.!!$F1 1889
13 TraesCS2D01G405100 chr6D 114016052 114017560 1508 True 2145 2145 92.522 722 2212 1 chr6D.!!$R1 1490
14 TraesCS2D01G405100 chr5B 260234930 260236437 1507 False 2115 2115 92.191 720 2209 1 chr5B.!!$F1 1489
15 TraesCS2D01G405100 chr2B 612067779 612068514 735 False 1188 1188 96.060 1 725 1 chr2B.!!$F1 724
16 TraesCS2D01G405100 chr2B 612074157 612074830 673 False 1112 1112 96.736 63 725 1 chr2B.!!$F2 662
17 TraesCS2D01G405100 chr5A 407701466 407702084 618 False 857 857 91.483 2342 2975 1 chr5A.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 499 0.031857 CCAAACAAACCAGCGCATGA 59.968 50.0 11.47 0.00 0.00 3.07 F
538 540 0.036164 TGGCACCGGGCATATATGAC 59.964 55.0 17.10 13.86 45.76 3.06 F
652 654 0.110678 TGGCCCAACCGTATTTGTGA 59.889 50.0 0.00 0.00 43.94 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1565 0.249120 ATCTTTCACGGACGCCATCA 59.751 50.0 0.0 0.0 0.0 3.07 R
1553 1568 0.250124 AACATCTTTCACGGACGCCA 60.250 50.0 0.0 0.0 0.0 5.69 R
2549 2763 0.322648 GGCCTCCAAAGCAAGCAAAT 59.677 50.0 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.347707 TGTTTCTCCGGAAGTGCTCAT 59.652 47.619 5.23 0.00 32.61 2.90
36 37 2.093288 TGCTCATCAGGAAAGGCTACAG 60.093 50.000 0.00 0.00 0.00 2.74
43 44 1.674322 GAAAGGCTACAGCGGGCAA 60.674 57.895 0.00 0.00 43.26 4.52
47 48 3.815396 GCTACAGCGGGCAAAGGC 61.815 66.667 0.00 0.00 40.13 4.35
246 247 2.093764 AGGAAGCCGATTGAGAGAACAG 60.094 50.000 0.00 0.00 0.00 3.16
364 366 1.081174 TCATTTCCCTCTCTCCTGGGT 59.919 52.381 0.00 0.00 43.74 4.51
365 367 1.918957 CATTTCCCTCTCTCCTGGGTT 59.081 52.381 0.00 0.00 43.74 4.11
366 368 1.657804 TTTCCCTCTCTCCTGGGTTC 58.342 55.000 0.00 0.00 43.74 3.62
367 369 0.614979 TTCCCTCTCTCCTGGGTTCG 60.615 60.000 0.00 0.00 43.74 3.95
368 370 1.000486 CCCTCTCTCCTGGGTTCGA 60.000 63.158 0.00 0.00 38.65 3.71
369 371 0.397816 CCCTCTCTCCTGGGTTCGAT 60.398 60.000 0.00 0.00 38.65 3.59
370 372 1.036707 CCTCTCTCCTGGGTTCGATC 58.963 60.000 0.00 0.00 0.00 3.69
371 373 1.410932 CCTCTCTCCTGGGTTCGATCT 60.411 57.143 0.00 0.00 0.00 2.75
372 374 2.158593 CCTCTCTCCTGGGTTCGATCTA 60.159 54.545 0.00 0.00 0.00 1.98
373 375 3.499563 CCTCTCTCCTGGGTTCGATCTAT 60.500 52.174 0.00 0.00 0.00 1.98
374 376 3.756434 CTCTCTCCTGGGTTCGATCTATC 59.244 52.174 0.00 0.00 0.00 2.08
375 377 3.396276 TCTCTCCTGGGTTCGATCTATCT 59.604 47.826 0.00 0.00 0.00 1.98
376 378 3.491342 TCTCCTGGGTTCGATCTATCTG 58.509 50.000 0.00 0.00 0.00 2.90
377 379 2.560542 CTCCTGGGTTCGATCTATCTGG 59.439 54.545 0.00 0.00 0.00 3.86
378 380 2.091278 TCCTGGGTTCGATCTATCTGGT 60.091 50.000 0.00 0.00 0.00 4.00
379 381 2.700897 CCTGGGTTCGATCTATCTGGTT 59.299 50.000 0.00 0.00 0.00 3.67
380 382 3.134804 CCTGGGTTCGATCTATCTGGTTT 59.865 47.826 0.00 0.00 0.00 3.27
381 383 4.122776 CTGGGTTCGATCTATCTGGTTTG 58.877 47.826 0.00 0.00 0.00 2.93
382 384 3.517901 TGGGTTCGATCTATCTGGTTTGT 59.482 43.478 0.00 0.00 0.00 2.83
383 385 4.019681 TGGGTTCGATCTATCTGGTTTGTT 60.020 41.667 0.00 0.00 0.00 2.83
384 386 4.571176 GGGTTCGATCTATCTGGTTTGTTC 59.429 45.833 0.00 0.00 0.00 3.18
385 387 4.267928 GGTTCGATCTATCTGGTTTGTTCG 59.732 45.833 0.00 0.00 0.00 3.95
386 388 4.976224 TCGATCTATCTGGTTTGTTCGA 57.024 40.909 0.00 0.00 32.57 3.71
387 389 5.515797 TCGATCTATCTGGTTTGTTCGAT 57.484 39.130 0.00 0.00 30.30 3.59
388 390 5.281727 TCGATCTATCTGGTTTGTTCGATG 58.718 41.667 0.00 0.00 30.30 3.84
389 391 5.067283 TCGATCTATCTGGTTTGTTCGATGA 59.933 40.000 0.00 0.00 30.30 2.92
390 392 5.748630 CGATCTATCTGGTTTGTTCGATGAA 59.251 40.000 0.00 0.00 0.00 2.57
391 393 6.255670 CGATCTATCTGGTTTGTTCGATGAAA 59.744 38.462 0.00 0.00 0.00 2.69
392 394 6.968131 TCTATCTGGTTTGTTCGATGAAAG 57.032 37.500 0.00 0.00 0.00 2.62
393 395 6.697395 TCTATCTGGTTTGTTCGATGAAAGA 58.303 36.000 0.00 0.00 0.00 2.52
394 396 7.331026 TCTATCTGGTTTGTTCGATGAAAGAT 58.669 34.615 0.00 0.00 0.00 2.40
395 397 8.474831 TCTATCTGGTTTGTTCGATGAAAGATA 58.525 33.333 0.00 0.00 0.00 1.98
396 398 6.968131 TCTGGTTTGTTCGATGAAAGATAG 57.032 37.500 0.00 0.00 0.00 2.08
397 399 5.351465 TCTGGTTTGTTCGATGAAAGATAGC 59.649 40.000 0.00 0.00 0.00 2.97
398 400 4.394920 TGGTTTGTTCGATGAAAGATAGCC 59.605 41.667 0.00 0.00 0.00 3.93
399 401 4.394920 GGTTTGTTCGATGAAAGATAGCCA 59.605 41.667 0.00 0.00 0.00 4.75
400 402 5.106317 GGTTTGTTCGATGAAAGATAGCCAA 60.106 40.000 0.00 0.00 0.00 4.52
401 403 6.378582 GTTTGTTCGATGAAAGATAGCCAAA 58.621 36.000 0.00 0.00 0.00 3.28
402 404 6.757897 TTGTTCGATGAAAGATAGCCAAAT 57.242 33.333 0.00 0.00 0.00 2.32
403 405 7.857734 TTGTTCGATGAAAGATAGCCAAATA 57.142 32.000 0.00 0.00 0.00 1.40
404 406 7.482654 TGTTCGATGAAAGATAGCCAAATAG 57.517 36.000 0.00 0.00 0.00 1.73
405 407 7.272244 TGTTCGATGAAAGATAGCCAAATAGA 58.728 34.615 0.00 0.00 0.00 1.98
406 408 7.439356 TGTTCGATGAAAGATAGCCAAATAGAG 59.561 37.037 0.00 0.00 0.00 2.43
407 409 6.459066 TCGATGAAAGATAGCCAAATAGAGG 58.541 40.000 0.00 0.00 0.00 3.69
414 416 3.596362 GCCAAATAGAGGCCTGGTT 57.404 52.632 12.00 0.00 46.50 3.67
415 417 1.852633 GCCAAATAGAGGCCTGGTTT 58.147 50.000 12.00 5.27 46.50 3.27
416 418 1.478105 GCCAAATAGAGGCCTGGTTTG 59.522 52.381 12.00 17.54 46.50 2.93
417 419 1.478105 CCAAATAGAGGCCTGGTTTGC 59.522 52.381 12.00 0.00 32.63 3.68
418 420 2.450476 CAAATAGAGGCCTGGTTTGCT 58.550 47.619 12.00 1.25 0.00 3.91
419 421 2.827921 CAAATAGAGGCCTGGTTTGCTT 59.172 45.455 12.00 0.00 0.00 3.91
420 422 2.426842 ATAGAGGCCTGGTTTGCTTC 57.573 50.000 12.00 0.00 35.27 3.86
421 423 0.328258 TAGAGGCCTGGTTTGCTTCC 59.672 55.000 12.00 0.00 35.61 3.46
422 424 1.228552 GAGGCCTGGTTTGCTTCCA 60.229 57.895 12.00 0.00 0.00 3.53
423 425 0.827507 GAGGCCTGGTTTGCTTCCAA 60.828 55.000 12.00 0.00 34.35 3.53
424 426 0.398381 AGGCCTGGTTTGCTTCCAAA 60.398 50.000 3.11 0.00 38.56 3.28
431 433 3.665544 TTTGCTTCCAAACAGCTGC 57.334 47.368 15.27 0.00 36.09 5.25
432 434 0.104671 TTTGCTTCCAAACAGCTGCC 59.895 50.000 15.27 0.00 36.09 4.85
433 435 1.042003 TTGCTTCCAAACAGCTGCCA 61.042 50.000 15.27 0.00 38.19 4.92
434 436 1.288127 GCTTCCAAACAGCTGCCAG 59.712 57.895 15.27 3.01 34.15 4.85
435 437 1.288127 CTTCCAAACAGCTGCCAGC 59.712 57.895 15.27 9.13 42.84 4.85
436 438 1.455402 TTCCAAACAGCTGCCAGCA 60.455 52.632 20.53 0.36 45.56 4.41
437 439 1.042003 TTCCAAACAGCTGCCAGCAA 61.042 50.000 20.53 0.00 45.56 3.91
438 440 1.300388 CCAAACAGCTGCCAGCAAC 60.300 57.895 20.53 0.00 45.56 4.17
439 441 1.300388 CAAACAGCTGCCAGCAACC 60.300 57.895 20.53 0.00 45.56 3.77
440 442 2.848858 AAACAGCTGCCAGCAACCG 61.849 57.895 20.53 6.68 45.56 4.44
441 443 4.569180 ACAGCTGCCAGCAACCGT 62.569 61.111 20.53 7.35 45.56 4.83
442 444 2.358615 CAGCTGCCAGCAACCGTA 60.359 61.111 20.53 0.00 45.56 4.02
443 445 1.746615 CAGCTGCCAGCAACCGTAT 60.747 57.895 20.53 0.00 45.56 3.06
444 446 1.002134 AGCTGCCAGCAACCGTATT 60.002 52.632 20.53 0.00 45.56 1.89
445 447 0.609131 AGCTGCCAGCAACCGTATTT 60.609 50.000 20.53 0.00 45.56 1.40
446 448 0.456653 GCTGCCAGCAACCGTATTTG 60.457 55.000 12.82 0.00 41.89 2.32
447 449 0.881118 CTGCCAGCAACCGTATTTGT 59.119 50.000 0.00 0.00 0.00 2.83
448 450 0.595588 TGCCAGCAACCGTATTTGTG 59.404 50.000 0.00 0.00 0.00 3.33
449 451 0.878416 GCCAGCAACCGTATTTGTGA 59.122 50.000 0.00 0.00 0.00 3.58
450 452 1.268352 GCCAGCAACCGTATTTGTGAA 59.732 47.619 0.00 0.00 0.00 3.18
451 453 2.668279 GCCAGCAACCGTATTTGTGAAG 60.668 50.000 0.00 0.00 0.00 3.02
452 454 2.584791 CAGCAACCGTATTTGTGAAGC 58.415 47.619 0.00 0.00 0.00 3.86
453 455 2.226437 CAGCAACCGTATTTGTGAAGCT 59.774 45.455 0.00 0.00 0.00 3.74
454 456 2.226437 AGCAACCGTATTTGTGAAGCTG 59.774 45.455 0.00 0.00 0.00 4.24
455 457 2.225491 GCAACCGTATTTGTGAAGCTGA 59.775 45.455 0.00 0.00 0.00 4.26
456 458 3.304391 GCAACCGTATTTGTGAAGCTGAA 60.304 43.478 0.00 0.00 0.00 3.02
457 459 4.466828 CAACCGTATTTGTGAAGCTGAAG 58.533 43.478 0.00 0.00 0.00 3.02
458 460 3.074412 ACCGTATTTGTGAAGCTGAAGG 58.926 45.455 0.00 0.00 0.00 3.46
459 461 3.244422 ACCGTATTTGTGAAGCTGAAGGA 60.244 43.478 0.00 0.00 0.00 3.36
460 462 3.751175 CCGTATTTGTGAAGCTGAAGGAA 59.249 43.478 0.00 0.00 0.00 3.36
461 463 4.378459 CCGTATTTGTGAAGCTGAAGGAAC 60.378 45.833 0.00 0.00 0.00 3.62
463 465 5.637810 CGTATTTGTGAAGCTGAAGGAACTA 59.362 40.000 0.00 0.00 38.49 2.24
464 466 6.183360 CGTATTTGTGAAGCTGAAGGAACTAG 60.183 42.308 0.00 0.00 38.49 2.57
465 467 3.045601 TGTGAAGCTGAAGGAACTAGC 57.954 47.619 0.00 0.00 38.49 3.42
466 468 2.289694 TGTGAAGCTGAAGGAACTAGCC 60.290 50.000 0.00 0.00 38.49 3.93
467 469 1.279271 TGAAGCTGAAGGAACTAGCCC 59.721 52.381 0.00 0.00 38.49 5.19
468 470 1.279271 GAAGCTGAAGGAACTAGCCCA 59.721 52.381 4.78 0.00 38.49 5.36
469 471 1.362224 AGCTGAAGGAACTAGCCCAA 58.638 50.000 4.78 0.00 38.49 4.12
470 472 1.003696 AGCTGAAGGAACTAGCCCAAC 59.996 52.381 4.78 0.00 38.49 3.77
471 473 1.726853 CTGAAGGAACTAGCCCAACG 58.273 55.000 4.78 0.00 38.49 4.10
472 474 0.321298 TGAAGGAACTAGCCCAACGC 60.321 55.000 4.78 0.00 38.49 4.84
473 475 0.321298 GAAGGAACTAGCCCAACGCA 60.321 55.000 4.78 0.00 38.49 5.24
474 476 0.328258 AAGGAACTAGCCCAACGCAT 59.672 50.000 4.78 0.00 38.49 4.73
475 477 0.392998 AGGAACTAGCCCAACGCATG 60.393 55.000 4.78 0.00 41.38 4.06
476 478 0.392461 GGAACTAGCCCAACGCATGA 60.392 55.000 0.00 0.00 41.38 3.07
477 479 1.448985 GAACTAGCCCAACGCATGAA 58.551 50.000 0.00 0.00 41.38 2.57
478 480 1.130561 GAACTAGCCCAACGCATGAAC 59.869 52.381 0.00 0.00 41.38 3.18
479 481 0.676782 ACTAGCCCAACGCATGAACC 60.677 55.000 0.00 0.00 41.38 3.62
480 482 0.676466 CTAGCCCAACGCATGAACCA 60.676 55.000 0.00 0.00 41.38 3.67
481 483 0.250945 TAGCCCAACGCATGAACCAA 60.251 50.000 0.00 0.00 41.38 3.67
482 484 1.112315 AGCCCAACGCATGAACCAAA 61.112 50.000 0.00 0.00 41.38 3.28
483 485 0.943835 GCCCAACGCATGAACCAAAC 60.944 55.000 0.00 0.00 37.47 2.93
484 486 0.387202 CCCAACGCATGAACCAAACA 59.613 50.000 0.00 0.00 0.00 2.83
485 487 1.202463 CCCAACGCATGAACCAAACAA 60.202 47.619 0.00 0.00 0.00 2.83
486 488 2.544685 CCAACGCATGAACCAAACAAA 58.455 42.857 0.00 0.00 0.00 2.83
487 489 2.283884 CCAACGCATGAACCAAACAAAC 59.716 45.455 0.00 0.00 0.00 2.93
488 490 2.217429 ACGCATGAACCAAACAAACC 57.783 45.000 0.00 0.00 0.00 3.27
489 491 1.478510 ACGCATGAACCAAACAAACCA 59.521 42.857 0.00 0.00 0.00 3.67
490 492 2.126467 CGCATGAACCAAACAAACCAG 58.874 47.619 0.00 0.00 0.00 4.00
491 493 1.866601 GCATGAACCAAACAAACCAGC 59.133 47.619 0.00 0.00 0.00 4.85
492 494 2.126467 CATGAACCAAACAAACCAGCG 58.874 47.619 0.00 0.00 0.00 5.18
493 495 0.179124 TGAACCAAACAAACCAGCGC 60.179 50.000 0.00 0.00 0.00 5.92
494 496 0.179124 GAACCAAACAAACCAGCGCA 60.179 50.000 11.47 0.00 0.00 6.09
495 497 0.463620 AACCAAACAAACCAGCGCAT 59.536 45.000 11.47 0.00 0.00 4.73
496 498 0.249405 ACCAAACAAACCAGCGCATG 60.249 50.000 11.47 4.88 0.00 4.06
497 499 0.031857 CCAAACAAACCAGCGCATGA 59.968 50.000 11.47 0.00 0.00 3.07
498 500 1.537776 CCAAACAAACCAGCGCATGAA 60.538 47.619 11.47 0.00 0.00 2.57
499 501 1.788308 CAAACAAACCAGCGCATGAAG 59.212 47.619 11.47 0.00 0.00 3.02
500 502 0.318955 AACAAACCAGCGCATGAAGC 60.319 50.000 11.47 0.25 40.87 3.86
501 503 1.286570 CAAACCAGCGCATGAAGCA 59.713 52.632 11.47 0.00 46.13 3.91
502 504 0.318869 CAAACCAGCGCATGAAGCAA 60.319 50.000 11.47 0.00 46.13 3.91
503 505 0.388659 AAACCAGCGCATGAAGCAAA 59.611 45.000 11.47 0.00 46.13 3.68
504 506 0.318955 AACCAGCGCATGAAGCAAAC 60.319 50.000 11.47 0.00 46.13 2.93
505 507 1.286570 CCAGCGCATGAAGCAAACA 59.713 52.632 11.47 0.00 46.13 2.83
506 508 0.318869 CCAGCGCATGAAGCAAACAA 60.319 50.000 11.47 0.00 46.13 2.83
507 509 1.489574 CAGCGCATGAAGCAAACAAA 58.510 45.000 11.47 0.00 46.13 2.83
508 510 1.454276 CAGCGCATGAAGCAAACAAAG 59.546 47.619 11.47 0.00 46.13 2.77
509 511 0.162294 GCGCATGAAGCAAACAAAGC 59.838 50.000 0.30 0.00 46.13 3.51
510 512 1.774639 CGCATGAAGCAAACAAAGCT 58.225 45.000 0.00 0.00 46.13 3.74
511 513 1.454276 CGCATGAAGCAAACAAAGCTG 59.546 47.619 0.00 0.00 46.13 4.24
512 514 2.746269 GCATGAAGCAAACAAAGCTGA 58.254 42.857 0.00 0.00 42.53 4.26
513 515 3.125316 GCATGAAGCAAACAAAGCTGAA 58.875 40.909 0.00 0.00 42.53 3.02
514 516 3.183775 GCATGAAGCAAACAAAGCTGAAG 59.816 43.478 0.00 0.00 42.53 3.02
515 517 3.441496 TGAAGCAAACAAAGCTGAAGG 57.559 42.857 0.00 0.00 42.53 3.46
516 518 3.023119 TGAAGCAAACAAAGCTGAAGGA 58.977 40.909 0.00 0.00 42.53 3.36
517 519 3.446873 TGAAGCAAACAAAGCTGAAGGAA 59.553 39.130 0.00 0.00 42.53 3.36
518 520 3.443099 AGCAAACAAAGCTGAAGGAAC 57.557 42.857 0.00 0.00 41.61 3.62
519 521 3.026694 AGCAAACAAAGCTGAAGGAACT 58.973 40.909 0.00 0.00 41.61 3.01
520 522 3.118542 GCAAACAAAGCTGAAGGAACTG 58.881 45.455 0.00 0.00 40.86 3.16
521 523 3.709987 CAAACAAAGCTGAAGGAACTGG 58.290 45.455 0.00 0.00 40.86 4.00
522 524 1.322442 ACAAAGCTGAAGGAACTGGC 58.678 50.000 0.00 0.00 40.86 4.85
523 525 1.321474 CAAAGCTGAAGGAACTGGCA 58.679 50.000 0.00 0.00 40.86 4.92
524 526 1.000938 CAAAGCTGAAGGAACTGGCAC 60.001 52.381 0.00 0.00 40.86 5.01
525 527 0.538287 AAGCTGAAGGAACTGGCACC 60.538 55.000 0.00 0.00 40.86 5.01
526 528 2.328099 GCTGAAGGAACTGGCACCG 61.328 63.158 0.00 0.00 40.86 4.94
527 529 1.672356 CTGAAGGAACTGGCACCGG 60.672 63.158 0.00 0.00 40.86 5.28
528 530 2.359975 GAAGGAACTGGCACCGGG 60.360 66.667 6.32 0.00 40.86 5.73
529 531 4.660938 AAGGAACTGGCACCGGGC 62.661 66.667 6.32 6.36 40.86 6.13
537 539 2.457759 TGGCACCGGGCATATATGA 58.542 52.632 17.10 0.00 45.76 2.15
538 540 0.036164 TGGCACCGGGCATATATGAC 59.964 55.000 17.10 13.86 45.76 3.06
539 541 2.657746 TGGCACCGGGCATATATGACA 61.658 52.381 20.24 0.00 45.76 3.58
540 542 1.442769 GCACCGGGCATATATGACAG 58.557 55.000 20.24 15.82 43.97 3.51
541 543 1.442769 CACCGGGCATATATGACAGC 58.557 55.000 20.24 2.92 37.62 4.40
542 544 0.324943 ACCGGGCATATATGACAGCC 59.675 55.000 20.24 11.59 46.28 4.85
556 558 2.936919 ACAGCCATTGTCACAAGAGA 57.063 45.000 0.00 0.00 33.87 3.10
557 559 3.430042 ACAGCCATTGTCACAAGAGAT 57.570 42.857 0.00 0.00 33.87 2.75
558 560 3.079578 ACAGCCATTGTCACAAGAGATG 58.920 45.455 6.34 6.34 33.87 2.90
559 561 2.422479 CAGCCATTGTCACAAGAGATGG 59.578 50.000 3.79 3.79 39.73 3.51
560 562 2.306805 AGCCATTGTCACAAGAGATGGA 59.693 45.455 11.45 0.00 39.38 3.41
561 563 2.681848 GCCATTGTCACAAGAGATGGAG 59.318 50.000 11.45 0.00 39.38 3.86
562 564 3.871463 GCCATTGTCACAAGAGATGGAGT 60.871 47.826 11.45 0.00 39.38 3.85
563 565 3.937706 CCATTGTCACAAGAGATGGAGTC 59.062 47.826 2.09 0.00 39.38 3.36
564 566 4.564199 CCATTGTCACAAGAGATGGAGTCA 60.564 45.833 2.09 0.00 39.38 3.41
565 567 3.949842 TGTCACAAGAGATGGAGTCAG 57.050 47.619 0.00 0.00 0.00 3.51
566 568 3.500343 TGTCACAAGAGATGGAGTCAGA 58.500 45.455 0.00 0.00 0.00 3.27
567 569 3.256879 TGTCACAAGAGATGGAGTCAGAC 59.743 47.826 0.00 0.00 0.00 3.51
568 570 3.256879 GTCACAAGAGATGGAGTCAGACA 59.743 47.826 2.66 0.00 0.00 3.41
569 571 3.509184 TCACAAGAGATGGAGTCAGACAG 59.491 47.826 2.66 0.00 0.00 3.51
570 572 3.257873 CACAAGAGATGGAGTCAGACAGT 59.742 47.826 2.66 0.00 0.00 3.55
571 573 4.460731 CACAAGAGATGGAGTCAGACAGTA 59.539 45.833 2.66 0.00 0.00 2.74
572 574 4.461081 ACAAGAGATGGAGTCAGACAGTAC 59.539 45.833 2.66 0.00 0.00 2.73
573 575 4.308526 AGAGATGGAGTCAGACAGTACA 57.691 45.455 2.66 0.00 0.00 2.90
574 576 4.865905 AGAGATGGAGTCAGACAGTACAT 58.134 43.478 2.66 0.00 0.00 2.29
575 577 5.268387 AGAGATGGAGTCAGACAGTACATT 58.732 41.667 2.66 0.00 0.00 2.71
576 578 6.427441 AGAGATGGAGTCAGACAGTACATTA 58.573 40.000 2.66 0.00 0.00 1.90
577 579 7.066142 AGAGATGGAGTCAGACAGTACATTAT 58.934 38.462 2.66 0.00 0.00 1.28
578 580 7.014134 AGAGATGGAGTCAGACAGTACATTATG 59.986 40.741 2.66 0.00 0.00 1.90
579 581 6.609212 AGATGGAGTCAGACAGTACATTATGT 59.391 38.462 2.58 2.58 0.00 2.29
580 582 6.208988 TGGAGTCAGACAGTACATTATGTC 57.791 41.667 0.00 5.13 44.97 3.06
589 591 7.435068 GACAGTACATTATGTCTGGTTTGTT 57.565 36.000 20.31 6.47 42.06 2.83
590 592 7.817418 ACAGTACATTATGTCTGGTTTGTTT 57.183 32.000 20.31 4.22 33.15 2.83
591 593 7.648142 ACAGTACATTATGTCTGGTTTGTTTG 58.352 34.615 20.31 4.51 33.15 2.93
592 594 7.083858 CAGTACATTATGTCTGGTTTGTTTGG 58.916 38.462 0.00 0.00 0.00 3.28
593 595 6.775629 AGTACATTATGTCTGGTTTGTTTGGT 59.224 34.615 0.00 0.00 0.00 3.67
594 596 6.478512 ACATTATGTCTGGTTTGTTTGGTT 57.521 33.333 0.00 0.00 0.00 3.67
595 597 7.589958 ACATTATGTCTGGTTTGTTTGGTTA 57.410 32.000 0.00 0.00 0.00 2.85
596 598 8.012957 ACATTATGTCTGGTTTGTTTGGTTAA 57.987 30.769 0.00 0.00 0.00 2.01
597 599 8.478877 ACATTATGTCTGGTTTGTTTGGTTAAA 58.521 29.630 0.00 0.00 0.00 1.52
598 600 9.487790 CATTATGTCTGGTTTGTTTGGTTAAAT 57.512 29.630 0.00 0.00 0.00 1.40
599 601 8.879342 TTATGTCTGGTTTGTTTGGTTAAATG 57.121 30.769 0.00 0.00 0.00 2.32
600 602 5.112686 TGTCTGGTTTGTTTGGTTAAATGC 58.887 37.500 0.00 0.00 0.00 3.56
601 603 5.112686 GTCTGGTTTGTTTGGTTAAATGCA 58.887 37.500 0.00 0.00 0.00 3.96
602 604 5.757808 GTCTGGTTTGTTTGGTTAAATGCAT 59.242 36.000 0.00 0.00 0.00 3.96
603 605 5.988561 TCTGGTTTGTTTGGTTAAATGCATC 59.011 36.000 0.00 0.00 0.00 3.91
604 606 5.923204 TGGTTTGTTTGGTTAAATGCATCT 58.077 33.333 0.00 0.00 0.00 2.90
605 607 7.014711 TCTGGTTTGTTTGGTTAAATGCATCTA 59.985 33.333 0.00 0.00 0.00 1.98
606 608 7.500992 TGGTTTGTTTGGTTAAATGCATCTAA 58.499 30.769 0.00 0.00 0.00 2.10
607 609 7.987458 TGGTTTGTTTGGTTAAATGCATCTAAA 59.013 29.630 0.00 0.00 0.00 1.85
608 610 8.279800 GGTTTGTTTGGTTAAATGCATCTAAAC 58.720 33.333 14.39 14.39 33.88 2.01
609 611 7.954788 TTGTTTGGTTAAATGCATCTAAACC 57.045 32.000 21.99 21.99 40.03 3.27
610 612 6.153067 TGTTTGGTTAAATGCATCTAAACCG 58.847 36.000 22.65 0.00 42.03 4.44
611 613 4.974368 TGGTTAAATGCATCTAAACCGG 57.026 40.909 22.65 0.00 42.03 5.28
612 614 4.590918 TGGTTAAATGCATCTAAACCGGA 58.409 39.130 22.65 11.08 42.03 5.14
613 615 4.638421 TGGTTAAATGCATCTAAACCGGAG 59.362 41.667 22.65 0.00 42.03 4.63
614 616 4.638865 GGTTAAATGCATCTAAACCGGAGT 59.361 41.667 9.46 0.00 31.09 3.85
615 617 5.220796 GGTTAAATGCATCTAAACCGGAGTC 60.221 44.000 9.46 0.00 31.09 3.36
616 618 3.627395 AATGCATCTAAACCGGAGTCA 57.373 42.857 9.46 0.00 0.00 3.41
617 619 3.627395 ATGCATCTAAACCGGAGTCAA 57.373 42.857 9.46 0.00 0.00 3.18
618 620 3.410631 TGCATCTAAACCGGAGTCAAA 57.589 42.857 9.46 0.00 0.00 2.69
619 621 3.071479 TGCATCTAAACCGGAGTCAAAC 58.929 45.455 9.46 0.00 0.00 2.93
620 622 3.071479 GCATCTAAACCGGAGTCAAACA 58.929 45.455 9.46 0.00 0.00 2.83
621 623 3.125316 GCATCTAAACCGGAGTCAAACAG 59.875 47.826 9.46 0.00 0.00 3.16
622 624 4.315803 CATCTAAACCGGAGTCAAACAGT 58.684 43.478 9.46 0.00 0.00 3.55
623 625 5.475719 CATCTAAACCGGAGTCAAACAGTA 58.524 41.667 9.46 0.00 0.00 2.74
624 626 4.874970 TCTAAACCGGAGTCAAACAGTAC 58.125 43.478 9.46 0.00 0.00 2.73
625 627 3.547054 AAACCGGAGTCAAACAGTACA 57.453 42.857 9.46 0.00 0.00 2.90
626 628 3.764237 AACCGGAGTCAAACAGTACAT 57.236 42.857 9.46 0.00 0.00 2.29
627 629 3.764237 ACCGGAGTCAAACAGTACATT 57.236 42.857 9.46 0.00 0.00 2.71
628 630 4.877378 ACCGGAGTCAAACAGTACATTA 57.123 40.909 9.46 0.00 0.00 1.90
629 631 5.416271 ACCGGAGTCAAACAGTACATTAT 57.584 39.130 9.46 0.00 0.00 1.28
630 632 5.801380 ACCGGAGTCAAACAGTACATTATT 58.199 37.500 9.46 0.00 0.00 1.40
631 633 6.235664 ACCGGAGTCAAACAGTACATTATTT 58.764 36.000 9.46 0.00 0.00 1.40
632 634 6.370718 ACCGGAGTCAAACAGTACATTATTTC 59.629 38.462 9.46 0.00 0.00 2.17
633 635 6.594159 CCGGAGTCAAACAGTACATTATTTCT 59.406 38.462 0.00 0.00 0.00 2.52
634 636 7.413000 CCGGAGTCAAACAGTACATTATTTCTG 60.413 40.741 0.00 0.00 0.00 3.02
635 637 7.413000 CGGAGTCAAACAGTACATTATTTCTGG 60.413 40.741 0.00 0.00 32.92 3.86
636 638 7.145932 AGTCAAACAGTACATTATTTCTGGC 57.854 36.000 0.00 0.00 32.92 4.85
637 639 6.151144 AGTCAAACAGTACATTATTTCTGGCC 59.849 38.462 0.00 0.00 32.92 5.36
638 640 5.417580 TCAAACAGTACATTATTTCTGGCCC 59.582 40.000 0.00 0.00 32.92 5.80
639 641 4.584638 ACAGTACATTATTTCTGGCCCA 57.415 40.909 0.00 0.00 32.92 5.36
640 642 4.929479 ACAGTACATTATTTCTGGCCCAA 58.071 39.130 0.00 0.00 32.92 4.12
641 643 4.705023 ACAGTACATTATTTCTGGCCCAAC 59.295 41.667 0.00 0.00 32.92 3.77
642 644 4.097892 CAGTACATTATTTCTGGCCCAACC 59.902 45.833 0.00 0.00 39.84 3.77
643 645 2.099405 ACATTATTTCTGGCCCAACCG 58.901 47.619 0.00 0.00 43.94 4.44
644 646 2.099405 CATTATTTCTGGCCCAACCGT 58.901 47.619 0.00 0.00 43.94 4.83
645 647 3.283751 CATTATTTCTGGCCCAACCGTA 58.716 45.455 0.00 0.00 43.94 4.02
646 648 3.655615 TTATTTCTGGCCCAACCGTAT 57.344 42.857 0.00 0.00 43.94 3.06
647 649 2.525105 ATTTCTGGCCCAACCGTATT 57.475 45.000 0.00 0.00 43.94 1.89
648 650 2.296073 TTTCTGGCCCAACCGTATTT 57.704 45.000 0.00 0.00 43.94 1.40
649 651 1.540267 TTCTGGCCCAACCGTATTTG 58.460 50.000 0.00 0.00 43.94 2.32
650 652 0.402504 TCTGGCCCAACCGTATTTGT 59.597 50.000 0.00 0.00 43.94 2.83
651 653 0.525761 CTGGCCCAACCGTATTTGTG 59.474 55.000 0.00 0.00 43.94 3.33
652 654 0.110678 TGGCCCAACCGTATTTGTGA 59.889 50.000 0.00 0.00 43.94 3.58
653 655 0.524414 GGCCCAACCGTATTTGTGAC 59.476 55.000 0.00 0.00 0.00 3.67
654 656 1.240256 GCCCAACCGTATTTGTGACA 58.760 50.000 0.00 0.00 0.00 3.58
655 657 1.609555 GCCCAACCGTATTTGTGACAA 59.390 47.619 0.00 0.00 0.00 3.18
656 658 2.230266 GCCCAACCGTATTTGTGACAAT 59.770 45.455 0.00 0.00 0.00 2.71
657 659 3.672241 GCCCAACCGTATTTGTGACAATC 60.672 47.826 0.00 0.00 0.00 2.67
658 660 3.504134 CCCAACCGTATTTGTGACAATCA 59.496 43.478 0.00 0.00 0.00 2.57
676 678 7.129457 ACAATCACTGTCATATATGTCTGGT 57.871 36.000 12.42 7.68 29.87 4.00
677 679 7.568349 ACAATCACTGTCATATATGTCTGGTT 58.432 34.615 12.42 2.91 29.87 3.67
678 680 8.049117 ACAATCACTGTCATATATGTCTGGTTT 58.951 33.333 12.42 4.66 29.87 3.27
679 681 8.340443 CAATCACTGTCATATATGTCTGGTTTG 58.660 37.037 12.42 11.25 0.00 2.93
680 682 6.946340 TCACTGTCATATATGTCTGGTTTGT 58.054 36.000 12.42 0.39 0.00 2.83
681 683 7.394016 TCACTGTCATATATGTCTGGTTTGTT 58.606 34.615 12.42 0.00 0.00 2.83
682 684 7.882791 TCACTGTCATATATGTCTGGTTTGTTT 59.117 33.333 12.42 0.00 0.00 2.83
683 685 7.964559 CACTGTCATATATGTCTGGTTTGTTTG 59.035 37.037 12.42 1.22 0.00 2.93
684 686 7.121168 ACTGTCATATATGTCTGGTTTGTTTGG 59.879 37.037 12.42 0.00 0.00 3.28
685 687 6.945435 TGTCATATATGTCTGGTTTGTTTGGT 59.055 34.615 12.42 0.00 0.00 3.67
686 688 7.450014 TGTCATATATGTCTGGTTTGTTTGGTT 59.550 33.333 12.42 0.00 0.00 3.67
687 689 8.952278 GTCATATATGTCTGGTTTGTTTGGTTA 58.048 33.333 12.42 0.00 0.00 2.85
688 690 9.521841 TCATATATGTCTGGTTTGTTTGGTTAA 57.478 29.630 12.42 0.00 0.00 2.01
692 694 6.287589 TGTCTGGTTTGTTTGGTTAAATGT 57.712 33.333 0.00 0.00 0.00 2.71
693 695 6.334202 TGTCTGGTTTGTTTGGTTAAATGTC 58.666 36.000 0.00 0.00 0.00 3.06
694 696 6.153680 TGTCTGGTTTGTTTGGTTAAATGTCT 59.846 34.615 0.00 0.00 0.00 3.41
695 697 6.695713 GTCTGGTTTGTTTGGTTAAATGTCTC 59.304 38.462 0.00 0.00 0.00 3.36
696 698 6.605594 TCTGGTTTGTTTGGTTAAATGTCTCT 59.394 34.615 0.00 0.00 0.00 3.10
697 699 6.801575 TGGTTTGTTTGGTTAAATGTCTCTC 58.198 36.000 0.00 0.00 0.00 3.20
698 700 6.183360 TGGTTTGTTTGGTTAAATGTCTCTCC 60.183 38.462 0.00 0.00 0.00 3.71
699 701 6.040504 GGTTTGTTTGGTTAAATGTCTCTCCT 59.959 38.462 0.00 0.00 0.00 3.69
700 702 6.633500 TTGTTTGGTTAAATGTCTCTCCTG 57.367 37.500 0.00 0.00 0.00 3.86
701 703 5.070001 TGTTTGGTTAAATGTCTCTCCTGG 58.930 41.667 0.00 0.00 0.00 4.45
702 704 4.301072 TTGGTTAAATGTCTCTCCTGGG 57.699 45.455 0.00 0.00 0.00 4.45
703 705 3.256704 TGGTTAAATGTCTCTCCTGGGT 58.743 45.455 0.00 0.00 0.00 4.51
704 706 3.655777 TGGTTAAATGTCTCTCCTGGGTT 59.344 43.478 0.00 0.00 0.00 4.11
705 707 4.847512 TGGTTAAATGTCTCTCCTGGGTTA 59.152 41.667 0.00 0.00 0.00 2.85
706 708 5.045869 TGGTTAAATGTCTCTCCTGGGTTAG 60.046 44.000 0.00 0.00 0.00 2.34
707 709 5.189145 GGTTAAATGTCTCTCCTGGGTTAGA 59.811 44.000 0.00 0.00 0.00 2.10
708 710 6.126739 GGTTAAATGTCTCTCCTGGGTTAGAT 60.127 42.308 0.00 0.00 0.00 1.98
709 711 5.365021 AAATGTCTCTCCTGGGTTAGATG 57.635 43.478 0.00 0.00 0.00 2.90
710 712 2.111384 TGTCTCTCCTGGGTTAGATGC 58.889 52.381 0.00 0.00 0.00 3.91
711 713 2.111384 GTCTCTCCTGGGTTAGATGCA 58.889 52.381 0.00 0.00 0.00 3.96
712 714 2.703007 GTCTCTCCTGGGTTAGATGCAT 59.297 50.000 0.00 0.00 0.00 3.96
713 715 3.135530 GTCTCTCCTGGGTTAGATGCATT 59.864 47.826 0.00 0.00 0.00 3.56
714 716 3.782523 TCTCTCCTGGGTTAGATGCATTT 59.217 43.478 0.00 0.00 0.00 2.32
717 719 5.437060 TCTCCTGGGTTAGATGCATTTAAC 58.563 41.667 24.83 24.83 0.00 2.01
792 796 6.091555 ACCCTGATCTATATTTTGGCTCCTA 58.908 40.000 0.00 0.00 0.00 2.94
793 797 6.562608 ACCCTGATCTATATTTTGGCTCCTAA 59.437 38.462 0.00 0.00 0.00 2.69
933 947 4.532521 AGGTTGGACTGTTATAGAGCTGTT 59.467 41.667 0.00 0.00 0.00 3.16
1276 1290 1.078848 GGAGACGGCAAGCAGACAT 60.079 57.895 0.00 0.00 0.00 3.06
1405 1419 1.752683 GACGGAGGAGAAGTGCTCTA 58.247 55.000 0.00 0.00 43.43 2.43
1489 1503 1.800805 CAGAATGGTTCGTGCTCAGT 58.199 50.000 0.00 0.00 34.02 3.41
1544 1559 0.992695 GAAGGCCTTCCTAACCAGGT 59.007 55.000 31.91 0.00 43.40 4.00
1700 1715 2.291865 TGACAGTGGAGATACCTGAGCT 60.292 50.000 0.00 0.00 39.86 4.09
1757 1774 6.028146 TGAGTATGAAGCAATGCAATTTGT 57.972 33.333 8.35 0.00 31.22 2.83
1882 1918 0.546267 AGGACTGCCTGATGAGTGGT 60.546 55.000 0.00 0.00 44.90 4.16
1885 1921 0.767375 ACTGCCTGATGAGTGGTTGT 59.233 50.000 0.00 0.00 0.00 3.32
1933 1970 4.633126 GCAAGCATATCTTCAAGACTGTGA 59.367 41.667 0.00 0.00 31.27 3.58
2120 2240 3.882288 TGCTTGCTGTGTACTGAATTTGA 59.118 39.130 0.00 0.00 0.00 2.69
2145 2290 8.578448 AGCCAAAATTATGCCAAATATTTGTT 57.422 26.923 23.24 12.29 36.45 2.83
2212 2406 3.385755 AGCTTCTTTGTTTGTGCCAGAAT 59.614 39.130 0.00 0.00 0.00 2.40
2213 2407 4.122046 GCTTCTTTGTTTGTGCCAGAATT 58.878 39.130 0.00 0.00 0.00 2.17
2214 2408 4.571984 GCTTCTTTGTTTGTGCCAGAATTT 59.428 37.500 0.00 0.00 0.00 1.82
2215 2409 5.277011 GCTTCTTTGTTTGTGCCAGAATTTC 60.277 40.000 0.00 0.00 0.00 2.17
2216 2410 5.596836 TCTTTGTTTGTGCCAGAATTTCT 57.403 34.783 0.00 0.00 0.00 2.52
2217 2411 5.976458 TCTTTGTTTGTGCCAGAATTTCTT 58.024 33.333 0.00 0.00 0.00 2.52
2218 2412 6.405538 TCTTTGTTTGTGCCAGAATTTCTTT 58.594 32.000 0.00 0.00 0.00 2.52
2219 2413 6.313411 TCTTTGTTTGTGCCAGAATTTCTTTG 59.687 34.615 0.00 0.00 0.00 2.77
2220 2414 5.083533 TGTTTGTGCCAGAATTTCTTTGT 57.916 34.783 0.00 0.00 0.00 2.83
2221 2415 4.869297 TGTTTGTGCCAGAATTTCTTTGTG 59.131 37.500 0.00 0.00 0.00 3.33
2222 2416 3.096489 TGTGCCAGAATTTCTTTGTGC 57.904 42.857 0.00 0.00 0.00 4.57
2223 2417 2.224018 TGTGCCAGAATTTCTTTGTGCC 60.224 45.455 0.00 0.00 0.00 5.01
2224 2418 2.037901 TGCCAGAATTTCTTTGTGCCA 58.962 42.857 0.00 0.00 0.00 4.92
2225 2419 2.433604 TGCCAGAATTTCTTTGTGCCAA 59.566 40.909 0.00 0.00 0.00 4.52
2226 2420 3.118482 TGCCAGAATTTCTTTGTGCCAAA 60.118 39.130 0.00 1.27 0.00 3.28
2227 2421 3.876320 GCCAGAATTTCTTTGTGCCAAAA 59.124 39.130 0.00 0.00 0.00 2.44
2336 2530 7.086376 CACAAATTCTGCAGCTTAACAGTAAT 58.914 34.615 9.47 0.00 35.37 1.89
2337 2531 7.596248 CACAAATTCTGCAGCTTAACAGTAATT 59.404 33.333 9.47 3.64 35.37 1.40
2338 2532 7.809806 ACAAATTCTGCAGCTTAACAGTAATTC 59.190 33.333 9.47 0.00 35.37 2.17
2339 2533 7.452880 AATTCTGCAGCTTAACAGTAATTCA 57.547 32.000 9.47 0.00 35.37 2.57
2340 2534 7.636150 ATTCTGCAGCTTAACAGTAATTCAT 57.364 32.000 9.47 0.00 35.37 2.57
2343 2537 7.555965 TCTGCAGCTTAACAGTAATTCATAGA 58.444 34.615 9.47 0.00 35.37 1.98
2495 2709 4.927267 ACCCCTCAGTTCATCAAACATA 57.073 40.909 0.00 0.00 40.56 2.29
2549 2763 3.507411 AGAACTAGCACCAGGTGTTCTA 58.493 45.455 21.26 13.12 39.49 2.10
2736 3016 6.385033 GCAGTTTCATTTGCTACTCTTTGAT 58.615 36.000 0.00 0.00 37.35 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.250234 TTCCTGATGAGCACTTCCGG 59.750 55.000 0.00 0.00 0.00 5.14
14 15 2.284190 GTAGCCTTTCCTGATGAGCAC 58.716 52.381 0.00 0.00 0.00 4.40
21 22 1.596934 CCGCTGTAGCCTTTCCTGA 59.403 57.895 0.00 0.00 37.91 3.86
36 37 0.536006 AGATATCTGCCTTTGCCCGC 60.536 55.000 3.89 0.00 36.33 6.13
91 92 5.643777 TGTACTCAGCTTTAGCAATCTTTCC 59.356 40.000 4.33 0.00 45.16 3.13
364 366 5.319140 TCGAACAAACCAGATAGATCGAA 57.681 39.130 0.00 0.00 35.42 3.71
365 367 4.976224 TCGAACAAACCAGATAGATCGA 57.024 40.909 0.00 0.00 35.92 3.59
366 368 5.281727 TCATCGAACAAACCAGATAGATCG 58.718 41.667 0.00 0.00 0.00 3.69
367 369 7.492669 TCTTTCATCGAACAAACCAGATAGATC 59.507 37.037 0.00 0.00 0.00 2.75
368 370 7.331026 TCTTTCATCGAACAAACCAGATAGAT 58.669 34.615 0.00 0.00 0.00 1.98
369 371 6.697395 TCTTTCATCGAACAAACCAGATAGA 58.303 36.000 0.00 0.00 0.00 1.98
370 372 6.968131 TCTTTCATCGAACAAACCAGATAG 57.032 37.500 0.00 0.00 0.00 2.08
371 373 7.224753 GCTATCTTTCATCGAACAAACCAGATA 59.775 37.037 0.00 0.00 0.00 1.98
372 374 6.037610 GCTATCTTTCATCGAACAAACCAGAT 59.962 38.462 0.00 0.00 0.00 2.90
373 375 5.351465 GCTATCTTTCATCGAACAAACCAGA 59.649 40.000 0.00 0.00 0.00 3.86
374 376 5.447818 GGCTATCTTTCATCGAACAAACCAG 60.448 44.000 0.00 0.00 0.00 4.00
375 377 4.394920 GGCTATCTTTCATCGAACAAACCA 59.605 41.667 0.00 0.00 0.00 3.67
376 378 4.394920 TGGCTATCTTTCATCGAACAAACC 59.605 41.667 0.00 0.00 0.00 3.27
377 379 5.545658 TGGCTATCTTTCATCGAACAAAC 57.454 39.130 0.00 0.00 0.00 2.93
378 380 6.567687 TTTGGCTATCTTTCATCGAACAAA 57.432 33.333 0.00 0.00 0.00 2.83
379 381 6.757897 ATTTGGCTATCTTTCATCGAACAA 57.242 33.333 0.00 0.00 0.00 2.83
380 382 7.272244 TCTATTTGGCTATCTTTCATCGAACA 58.728 34.615 0.00 0.00 0.00 3.18
381 383 7.095439 CCTCTATTTGGCTATCTTTCATCGAAC 60.095 40.741 0.00 0.00 0.00 3.95
382 384 6.931281 CCTCTATTTGGCTATCTTTCATCGAA 59.069 38.462 0.00 0.00 0.00 3.71
383 385 6.459066 CCTCTATTTGGCTATCTTTCATCGA 58.541 40.000 0.00 0.00 0.00 3.59
384 386 5.121454 GCCTCTATTTGGCTATCTTTCATCG 59.879 44.000 0.00 0.00 46.38 3.84
385 387 6.493449 GCCTCTATTTGGCTATCTTTCATC 57.507 41.667 0.00 0.00 46.38 2.92
397 399 1.478105 GCAAACCAGGCCTCTATTTGG 59.522 52.381 24.29 16.79 32.87 3.28
398 400 2.450476 AGCAAACCAGGCCTCTATTTG 58.550 47.619 21.11 21.11 34.20 2.32
399 401 2.907458 AGCAAACCAGGCCTCTATTT 57.093 45.000 0.00 0.05 0.00 1.40
400 402 2.621668 GGAAGCAAACCAGGCCTCTATT 60.622 50.000 0.00 0.00 0.00 1.73
401 403 1.064389 GGAAGCAAACCAGGCCTCTAT 60.064 52.381 0.00 0.00 0.00 1.98
402 404 0.328258 GGAAGCAAACCAGGCCTCTA 59.672 55.000 0.00 0.00 0.00 2.43
403 405 1.075659 GGAAGCAAACCAGGCCTCT 59.924 57.895 0.00 0.00 0.00 3.69
404 406 0.827507 TTGGAAGCAAACCAGGCCTC 60.828 55.000 0.00 0.00 38.70 4.70
405 407 0.398381 TTTGGAAGCAAACCAGGCCT 60.398 50.000 0.00 0.00 38.70 5.19
406 408 0.249868 GTTTGGAAGCAAACCAGGCC 60.250 55.000 0.00 0.00 38.68 5.19
407 409 0.463620 TGTTTGGAAGCAAACCAGGC 59.536 50.000 0.00 0.00 42.58 4.85
408 410 1.538849 GCTGTTTGGAAGCAAACCAGG 60.539 52.381 0.00 0.00 42.58 4.45
409 411 1.410153 AGCTGTTTGGAAGCAAACCAG 59.590 47.619 0.00 0.00 43.37 4.00
410 412 1.136695 CAGCTGTTTGGAAGCAAACCA 59.863 47.619 5.25 0.00 43.37 3.67
411 413 1.856802 CAGCTGTTTGGAAGCAAACC 58.143 50.000 5.25 0.00 43.37 3.27
412 414 1.211743 GCAGCTGTTTGGAAGCAAAC 58.788 50.000 16.64 0.00 43.37 2.93
413 415 0.104671 GGCAGCTGTTTGGAAGCAAA 59.895 50.000 16.64 0.00 43.37 3.68
414 416 1.042003 TGGCAGCTGTTTGGAAGCAA 61.042 50.000 16.64 0.00 43.37 3.91
415 417 1.455402 TGGCAGCTGTTTGGAAGCA 60.455 52.632 16.64 0.00 43.37 3.91
416 418 1.288127 CTGGCAGCTGTTTGGAAGC 59.712 57.895 16.64 0.00 41.15 3.86
417 419 1.288127 GCTGGCAGCTGTTTGGAAG 59.712 57.895 31.37 5.45 38.45 3.46
418 420 1.042003 TTGCTGGCAGCTGTTTGGAA 61.042 50.000 36.50 19.93 42.97 3.53
419 421 1.455402 TTGCTGGCAGCTGTTTGGA 60.455 52.632 36.50 14.98 42.97 3.53
420 422 1.300388 GTTGCTGGCAGCTGTTTGG 60.300 57.895 36.50 0.93 42.97 3.28
421 423 1.300388 GGTTGCTGGCAGCTGTTTG 60.300 57.895 36.50 6.60 42.97 2.93
422 424 2.848858 CGGTTGCTGGCAGCTGTTT 61.849 57.895 36.50 0.00 42.97 2.83
423 425 2.674563 TACGGTTGCTGGCAGCTGTT 62.675 55.000 36.50 19.79 42.66 3.16
424 426 2.469465 ATACGGTTGCTGGCAGCTGT 62.469 55.000 36.50 28.74 46.02 4.40
425 427 1.308069 AATACGGTTGCTGGCAGCTG 61.308 55.000 36.50 25.28 42.97 4.24
426 428 0.609131 AAATACGGTTGCTGGCAGCT 60.609 50.000 36.50 20.76 42.97 4.24
427 429 0.456653 CAAATACGGTTGCTGGCAGC 60.457 55.000 31.91 31.91 42.82 5.25
428 430 0.881118 ACAAATACGGTTGCTGGCAG 59.119 50.000 10.94 10.94 31.29 4.85
429 431 0.595588 CACAAATACGGTTGCTGGCA 59.404 50.000 0.00 0.00 31.29 4.92
430 432 0.878416 TCACAAATACGGTTGCTGGC 59.122 50.000 0.00 0.00 31.29 4.85
431 433 2.668279 GCTTCACAAATACGGTTGCTGG 60.668 50.000 0.00 0.00 31.29 4.85
432 434 2.226437 AGCTTCACAAATACGGTTGCTG 59.774 45.455 0.00 0.00 31.29 4.41
433 435 2.226437 CAGCTTCACAAATACGGTTGCT 59.774 45.455 0.00 0.00 31.29 3.91
434 436 2.225491 TCAGCTTCACAAATACGGTTGC 59.775 45.455 0.00 0.00 31.29 4.17
435 437 4.466828 CTTCAGCTTCACAAATACGGTTG 58.533 43.478 0.00 0.00 34.52 3.77
436 438 3.502211 CCTTCAGCTTCACAAATACGGTT 59.498 43.478 0.00 0.00 0.00 4.44
437 439 3.074412 CCTTCAGCTTCACAAATACGGT 58.926 45.455 0.00 0.00 0.00 4.83
438 440 3.334691 TCCTTCAGCTTCACAAATACGG 58.665 45.455 0.00 0.00 0.00 4.02
439 441 4.452455 AGTTCCTTCAGCTTCACAAATACG 59.548 41.667 0.00 0.00 0.00 3.06
440 442 5.948992 AGTTCCTTCAGCTTCACAAATAC 57.051 39.130 0.00 0.00 0.00 1.89
441 443 5.643777 GCTAGTTCCTTCAGCTTCACAAATA 59.356 40.000 0.00 0.00 32.46 1.40
442 444 4.457257 GCTAGTTCCTTCAGCTTCACAAAT 59.543 41.667 0.00 0.00 32.46 2.32
443 445 3.815401 GCTAGTTCCTTCAGCTTCACAAA 59.185 43.478 0.00 0.00 32.46 2.83
444 446 3.403038 GCTAGTTCCTTCAGCTTCACAA 58.597 45.455 0.00 0.00 32.46 3.33
445 447 2.289694 GGCTAGTTCCTTCAGCTTCACA 60.290 50.000 0.00 0.00 35.60 3.58
446 448 2.351455 GGCTAGTTCCTTCAGCTTCAC 58.649 52.381 0.00 0.00 35.60 3.18
447 449 1.279271 GGGCTAGTTCCTTCAGCTTCA 59.721 52.381 0.00 0.00 35.60 3.02
448 450 1.279271 TGGGCTAGTTCCTTCAGCTTC 59.721 52.381 5.97 0.00 35.60 3.86
449 451 1.362224 TGGGCTAGTTCCTTCAGCTT 58.638 50.000 5.97 0.00 35.60 3.74
450 452 1.003696 GTTGGGCTAGTTCCTTCAGCT 59.996 52.381 5.97 0.00 35.60 4.24
451 453 1.454201 GTTGGGCTAGTTCCTTCAGC 58.546 55.000 5.97 0.00 34.48 4.26
452 454 1.726853 CGTTGGGCTAGTTCCTTCAG 58.273 55.000 5.97 0.00 0.00 3.02
453 455 0.321298 GCGTTGGGCTAGTTCCTTCA 60.321 55.000 5.97 0.00 39.11 3.02
454 456 0.321298 TGCGTTGGGCTAGTTCCTTC 60.321 55.000 5.97 0.04 44.05 3.46
455 457 0.328258 ATGCGTTGGGCTAGTTCCTT 59.672 50.000 5.97 0.00 44.05 3.36
456 458 0.392998 CATGCGTTGGGCTAGTTCCT 60.393 55.000 5.97 0.00 44.05 3.36
457 459 0.392461 TCATGCGTTGGGCTAGTTCC 60.392 55.000 0.00 0.00 44.05 3.62
458 460 1.130561 GTTCATGCGTTGGGCTAGTTC 59.869 52.381 0.00 0.00 44.05 3.01
459 461 1.165270 GTTCATGCGTTGGGCTAGTT 58.835 50.000 0.00 0.00 44.05 2.24
460 462 0.676782 GGTTCATGCGTTGGGCTAGT 60.677 55.000 0.00 0.00 44.05 2.57
461 463 0.676466 TGGTTCATGCGTTGGGCTAG 60.676 55.000 0.00 0.00 44.05 3.42
462 464 0.250945 TTGGTTCATGCGTTGGGCTA 60.251 50.000 0.00 0.00 44.05 3.93
463 465 1.112315 TTTGGTTCATGCGTTGGGCT 61.112 50.000 0.00 0.00 44.05 5.19
464 466 0.943835 GTTTGGTTCATGCGTTGGGC 60.944 55.000 0.00 0.00 43.96 5.36
465 467 0.387202 TGTTTGGTTCATGCGTTGGG 59.613 50.000 0.00 0.00 0.00 4.12
466 468 2.215907 TTGTTTGGTTCATGCGTTGG 57.784 45.000 0.00 0.00 0.00 3.77
467 469 2.283884 GGTTTGTTTGGTTCATGCGTTG 59.716 45.455 0.00 0.00 0.00 4.10
468 470 2.093973 TGGTTTGTTTGGTTCATGCGTT 60.094 40.909 0.00 0.00 0.00 4.84
469 471 1.478510 TGGTTTGTTTGGTTCATGCGT 59.521 42.857 0.00 0.00 0.00 5.24
470 472 2.126467 CTGGTTTGTTTGGTTCATGCG 58.874 47.619 0.00 0.00 0.00 4.73
471 473 1.866601 GCTGGTTTGTTTGGTTCATGC 59.133 47.619 0.00 0.00 0.00 4.06
472 474 2.126467 CGCTGGTTTGTTTGGTTCATG 58.874 47.619 0.00 0.00 0.00 3.07
473 475 1.537990 GCGCTGGTTTGTTTGGTTCAT 60.538 47.619 0.00 0.00 0.00 2.57
474 476 0.179124 GCGCTGGTTTGTTTGGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
475 477 0.179124 TGCGCTGGTTTGTTTGGTTC 60.179 50.000 9.73 0.00 0.00 3.62
476 478 0.463620 ATGCGCTGGTTTGTTTGGTT 59.536 45.000 9.73 0.00 0.00 3.67
477 479 0.249405 CATGCGCTGGTTTGTTTGGT 60.249 50.000 9.73 0.00 0.00 3.67
478 480 0.031857 TCATGCGCTGGTTTGTTTGG 59.968 50.000 9.73 0.00 0.00 3.28
479 481 1.788308 CTTCATGCGCTGGTTTGTTTG 59.212 47.619 9.73 0.00 0.00 2.93
480 482 1.869342 GCTTCATGCGCTGGTTTGTTT 60.869 47.619 9.73 0.00 0.00 2.83
481 483 0.318955 GCTTCATGCGCTGGTTTGTT 60.319 50.000 9.73 0.00 0.00 2.83
482 484 1.286880 GCTTCATGCGCTGGTTTGT 59.713 52.632 9.73 0.00 0.00 2.83
483 485 0.318869 TTGCTTCATGCGCTGGTTTG 60.319 50.000 9.73 0.00 46.63 2.93
484 486 0.388659 TTTGCTTCATGCGCTGGTTT 59.611 45.000 9.73 0.00 46.63 3.27
485 487 0.318955 GTTTGCTTCATGCGCTGGTT 60.319 50.000 9.73 0.00 46.63 3.67
486 488 1.286880 GTTTGCTTCATGCGCTGGT 59.713 52.632 9.73 0.00 46.63 4.00
487 489 0.318869 TTGTTTGCTTCATGCGCTGG 60.319 50.000 9.73 0.00 46.63 4.85
488 490 1.454276 CTTTGTTTGCTTCATGCGCTG 59.546 47.619 9.73 4.58 46.63 5.18
489 491 1.774639 CTTTGTTTGCTTCATGCGCT 58.225 45.000 9.73 0.00 46.63 5.92
490 492 0.162294 GCTTTGTTTGCTTCATGCGC 59.838 50.000 0.00 0.00 46.63 6.09
491 493 1.454276 CAGCTTTGTTTGCTTCATGCG 59.546 47.619 0.00 0.00 46.63 4.73
492 494 2.746269 TCAGCTTTGTTTGCTTCATGC 58.254 42.857 0.00 0.00 38.92 4.06
493 495 3.739300 CCTTCAGCTTTGTTTGCTTCATG 59.261 43.478 0.00 0.00 38.92 3.07
494 496 3.638160 TCCTTCAGCTTTGTTTGCTTCAT 59.362 39.130 0.00 0.00 38.92 2.57
495 497 3.023119 TCCTTCAGCTTTGTTTGCTTCA 58.977 40.909 0.00 0.00 38.92 3.02
496 498 3.715628 TCCTTCAGCTTTGTTTGCTTC 57.284 42.857 0.00 0.00 38.92 3.86
497 499 3.448660 AGTTCCTTCAGCTTTGTTTGCTT 59.551 39.130 0.00 0.00 38.92 3.91
498 500 3.026694 AGTTCCTTCAGCTTTGTTTGCT 58.973 40.909 0.00 0.00 42.06 3.91
499 501 3.118542 CAGTTCCTTCAGCTTTGTTTGC 58.881 45.455 0.00 0.00 0.00 3.68
500 502 3.709987 CCAGTTCCTTCAGCTTTGTTTG 58.290 45.455 0.00 0.00 0.00 2.93
501 503 2.101415 GCCAGTTCCTTCAGCTTTGTTT 59.899 45.455 0.00 0.00 0.00 2.83
502 504 1.683385 GCCAGTTCCTTCAGCTTTGTT 59.317 47.619 0.00 0.00 0.00 2.83
503 505 1.322442 GCCAGTTCCTTCAGCTTTGT 58.678 50.000 0.00 0.00 0.00 2.83
504 506 1.000938 GTGCCAGTTCCTTCAGCTTTG 60.001 52.381 0.00 0.00 0.00 2.77
505 507 1.322442 GTGCCAGTTCCTTCAGCTTT 58.678 50.000 0.00 0.00 0.00 3.51
506 508 0.538287 GGTGCCAGTTCCTTCAGCTT 60.538 55.000 0.00 0.00 0.00 3.74
507 509 1.073897 GGTGCCAGTTCCTTCAGCT 59.926 57.895 0.00 0.00 0.00 4.24
508 510 2.328099 CGGTGCCAGTTCCTTCAGC 61.328 63.158 0.00 0.00 0.00 4.26
509 511 1.672356 CCGGTGCCAGTTCCTTCAG 60.672 63.158 0.00 0.00 0.00 3.02
510 512 2.429930 CCGGTGCCAGTTCCTTCA 59.570 61.111 0.00 0.00 0.00 3.02
511 513 2.359975 CCCGGTGCCAGTTCCTTC 60.360 66.667 0.00 0.00 0.00 3.46
512 514 4.660938 GCCCGGTGCCAGTTCCTT 62.661 66.667 0.00 0.00 0.00 3.36
514 516 2.624674 ATATGCCCGGTGCCAGTTCC 62.625 60.000 11.72 0.00 40.16 3.62
515 517 0.107831 TATATGCCCGGTGCCAGTTC 59.892 55.000 11.72 0.00 40.16 3.01
516 518 0.771127 ATATATGCCCGGTGCCAGTT 59.229 50.000 11.72 0.00 40.16 3.16
517 519 0.036732 CATATATGCCCGGTGCCAGT 59.963 55.000 11.72 2.21 40.16 4.00
518 520 0.324614 TCATATATGCCCGGTGCCAG 59.675 55.000 7.92 0.00 40.16 4.85
519 521 0.036164 GTCATATATGCCCGGTGCCA 59.964 55.000 7.92 1.07 40.16 4.92
520 522 0.036164 TGTCATATATGCCCGGTGCC 59.964 55.000 7.92 0.00 40.16 5.01
521 523 1.442769 CTGTCATATATGCCCGGTGC 58.557 55.000 7.92 4.04 41.77 5.01
522 524 1.442769 GCTGTCATATATGCCCGGTG 58.557 55.000 7.92 0.00 0.00 4.94
523 525 0.324943 GGCTGTCATATATGCCCGGT 59.675 55.000 7.92 0.00 39.49 5.28
524 526 0.324614 TGGCTGTCATATATGCCCGG 59.675 55.000 7.92 0.00 44.32 5.73
525 527 2.408271 ATGGCTGTCATATATGCCCG 57.592 50.000 7.92 0.00 44.32 6.13
526 528 3.424703 ACAATGGCTGTCATATATGCCC 58.575 45.455 7.92 6.28 44.32 5.36
537 539 2.936919 TCTCTTGTGACAATGGCTGT 57.063 45.000 0.00 0.00 42.61 4.40
538 540 2.422479 CCATCTCTTGTGACAATGGCTG 59.578 50.000 0.00 0.00 31.24 4.85
539 541 2.306805 TCCATCTCTTGTGACAATGGCT 59.693 45.455 10.11 0.00 37.41 4.75
540 542 2.681848 CTCCATCTCTTGTGACAATGGC 59.318 50.000 10.11 0.00 37.41 4.40
541 543 3.937706 GACTCCATCTCTTGTGACAATGG 59.062 47.826 8.93 8.93 38.58 3.16
542 544 4.572909 TGACTCCATCTCTTGTGACAATG 58.427 43.478 0.00 0.00 0.00 2.82
543 545 4.529769 TCTGACTCCATCTCTTGTGACAAT 59.470 41.667 0.00 0.00 0.00 2.71
544 546 3.897505 TCTGACTCCATCTCTTGTGACAA 59.102 43.478 0.00 0.00 0.00 3.18
545 547 3.256879 GTCTGACTCCATCTCTTGTGACA 59.743 47.826 0.00 0.00 0.00 3.58
546 548 3.256879 TGTCTGACTCCATCTCTTGTGAC 59.743 47.826 9.51 0.00 0.00 3.67
547 549 3.500343 TGTCTGACTCCATCTCTTGTGA 58.500 45.455 9.51 0.00 0.00 3.58
548 550 3.257873 ACTGTCTGACTCCATCTCTTGTG 59.742 47.826 9.51 0.00 0.00 3.33
549 551 3.505386 ACTGTCTGACTCCATCTCTTGT 58.495 45.455 9.51 0.00 0.00 3.16
550 552 4.460731 TGTACTGTCTGACTCCATCTCTTG 59.539 45.833 9.51 0.00 0.00 3.02
551 553 4.667573 TGTACTGTCTGACTCCATCTCTT 58.332 43.478 9.51 0.00 0.00 2.85
552 554 4.308526 TGTACTGTCTGACTCCATCTCT 57.691 45.455 9.51 0.00 0.00 3.10
553 555 5.590530 AATGTACTGTCTGACTCCATCTC 57.409 43.478 9.51 0.00 0.00 2.75
554 556 6.609212 ACATAATGTACTGTCTGACTCCATCT 59.391 38.462 9.51 1.46 0.00 2.90
555 557 6.810911 ACATAATGTACTGTCTGACTCCATC 58.189 40.000 9.51 0.00 0.00 3.51
556 558 6.798427 ACATAATGTACTGTCTGACTCCAT 57.202 37.500 9.51 3.33 0.00 3.41
557 559 6.208988 GACATAATGTACTGTCTGACTCCA 57.791 41.667 9.51 1.11 38.94 3.86
565 567 7.435068 AACAAACCAGACATAATGTACTGTC 57.565 36.000 5.13 5.13 41.65 3.51
566 568 7.255451 CCAAACAAACCAGACATAATGTACTGT 60.255 37.037 0.00 0.00 0.00 3.55
567 569 7.083858 CCAAACAAACCAGACATAATGTACTG 58.916 38.462 0.00 0.00 0.00 2.74
568 570 6.775629 ACCAAACAAACCAGACATAATGTACT 59.224 34.615 0.00 0.00 0.00 2.73
569 571 6.977213 ACCAAACAAACCAGACATAATGTAC 58.023 36.000 0.00 0.00 0.00 2.90
570 572 7.589958 AACCAAACAAACCAGACATAATGTA 57.410 32.000 0.00 0.00 0.00 2.29
571 573 6.478512 AACCAAACAAACCAGACATAATGT 57.521 33.333 0.00 0.00 0.00 2.71
572 574 8.879342 TTTAACCAAACAAACCAGACATAATG 57.121 30.769 0.00 0.00 0.00 1.90
573 575 9.487790 CATTTAACCAAACAAACCAGACATAAT 57.512 29.630 0.00 0.00 0.00 1.28
574 576 7.439655 GCATTTAACCAAACAAACCAGACATAA 59.560 33.333 0.00 0.00 0.00 1.90
575 577 6.926272 GCATTTAACCAAACAAACCAGACATA 59.074 34.615 0.00 0.00 0.00 2.29
576 578 5.757808 GCATTTAACCAAACAAACCAGACAT 59.242 36.000 0.00 0.00 0.00 3.06
577 579 5.112686 GCATTTAACCAAACAAACCAGACA 58.887 37.500 0.00 0.00 0.00 3.41
578 580 5.112686 TGCATTTAACCAAACAAACCAGAC 58.887 37.500 0.00 0.00 0.00 3.51
579 581 5.344743 TGCATTTAACCAAACAAACCAGA 57.655 34.783 0.00 0.00 0.00 3.86
580 582 5.990996 AGATGCATTTAACCAAACAAACCAG 59.009 36.000 0.00 0.00 0.00 4.00
581 583 5.923204 AGATGCATTTAACCAAACAAACCA 58.077 33.333 0.00 0.00 0.00 3.67
582 584 7.954788 TTAGATGCATTTAACCAAACAAACC 57.045 32.000 0.00 0.00 0.00 3.27
583 585 8.279800 GGTTTAGATGCATTTAACCAAACAAAC 58.720 33.333 23.07 13.20 38.46 2.93
584 586 7.169982 CGGTTTAGATGCATTTAACCAAACAAA 59.830 33.333 25.37 6.46 38.49 2.83
585 587 6.642950 CGGTTTAGATGCATTTAACCAAACAA 59.357 34.615 25.37 5.64 38.49 2.83
586 588 6.153067 CGGTTTAGATGCATTTAACCAAACA 58.847 36.000 25.37 6.19 38.49 2.83
587 589 5.575218 CCGGTTTAGATGCATTTAACCAAAC 59.425 40.000 25.37 16.59 38.49 2.93
588 590 5.477291 TCCGGTTTAGATGCATTTAACCAAA 59.523 36.000 25.37 15.98 38.49 3.28
589 591 5.010933 TCCGGTTTAGATGCATTTAACCAA 58.989 37.500 25.37 16.21 38.49 3.67
590 592 4.590918 TCCGGTTTAGATGCATTTAACCA 58.409 39.130 25.37 13.02 38.49 3.67
591 593 4.638865 ACTCCGGTTTAGATGCATTTAACC 59.361 41.667 20.23 20.23 35.91 2.85
592 594 5.353123 TGACTCCGGTTTAGATGCATTTAAC 59.647 40.000 9.09 9.43 0.00 2.01
593 595 5.492895 TGACTCCGGTTTAGATGCATTTAA 58.507 37.500 0.00 2.52 0.00 1.52
594 596 5.092554 TGACTCCGGTTTAGATGCATTTA 57.907 39.130 0.00 0.00 0.00 1.40
595 597 3.950397 TGACTCCGGTTTAGATGCATTT 58.050 40.909 0.00 0.00 0.00 2.32
596 598 3.627395 TGACTCCGGTTTAGATGCATT 57.373 42.857 0.00 0.00 0.00 3.56
597 599 3.627395 TTGACTCCGGTTTAGATGCAT 57.373 42.857 0.00 0.00 0.00 3.96
598 600 3.071479 GTTTGACTCCGGTTTAGATGCA 58.929 45.455 0.00 0.00 0.00 3.96
599 601 3.071479 TGTTTGACTCCGGTTTAGATGC 58.929 45.455 0.00 0.00 0.00 3.91
600 602 4.315803 ACTGTTTGACTCCGGTTTAGATG 58.684 43.478 0.00 0.00 0.00 2.90
601 603 4.618920 ACTGTTTGACTCCGGTTTAGAT 57.381 40.909 0.00 0.00 0.00 1.98
602 604 4.341806 TGTACTGTTTGACTCCGGTTTAGA 59.658 41.667 0.00 0.00 0.00 2.10
603 605 4.624015 TGTACTGTTTGACTCCGGTTTAG 58.376 43.478 0.00 0.00 0.00 1.85
604 606 4.669206 TGTACTGTTTGACTCCGGTTTA 57.331 40.909 0.00 0.00 0.00 2.01
605 607 3.547054 TGTACTGTTTGACTCCGGTTT 57.453 42.857 0.00 0.00 0.00 3.27
606 608 3.764237 ATGTACTGTTTGACTCCGGTT 57.236 42.857 0.00 0.00 0.00 4.44
607 609 3.764237 AATGTACTGTTTGACTCCGGT 57.236 42.857 0.00 0.00 0.00 5.28
608 610 6.594159 AGAAATAATGTACTGTTTGACTCCGG 59.406 38.462 0.00 0.00 0.00 5.14
609 611 7.413000 CCAGAAATAATGTACTGTTTGACTCCG 60.413 40.741 0.00 0.00 0.00 4.63
610 612 7.626452 GCCAGAAATAATGTACTGTTTGACTCC 60.626 40.741 0.00 0.00 0.00 3.85
611 613 7.244192 GCCAGAAATAATGTACTGTTTGACTC 58.756 38.462 0.00 0.00 0.00 3.36
612 614 6.151144 GGCCAGAAATAATGTACTGTTTGACT 59.849 38.462 0.00 0.00 0.00 3.41
613 615 6.322491 GGCCAGAAATAATGTACTGTTTGAC 58.678 40.000 0.00 0.00 0.00 3.18
614 616 5.417580 GGGCCAGAAATAATGTACTGTTTGA 59.582 40.000 4.39 0.00 0.00 2.69
615 617 5.184864 TGGGCCAGAAATAATGTACTGTTTG 59.815 40.000 0.00 0.00 0.00 2.93
616 618 5.329399 TGGGCCAGAAATAATGTACTGTTT 58.671 37.500 0.00 0.00 0.00 2.83
617 619 4.929479 TGGGCCAGAAATAATGTACTGTT 58.071 39.130 0.00 0.00 0.00 3.16
618 620 4.584638 TGGGCCAGAAATAATGTACTGT 57.415 40.909 0.00 0.00 0.00 3.55
619 621 4.097892 GGTTGGGCCAGAAATAATGTACTG 59.902 45.833 6.23 0.00 37.17 2.74
620 622 4.278310 GGTTGGGCCAGAAATAATGTACT 58.722 43.478 6.23 0.00 37.17 2.73
621 623 3.066203 CGGTTGGGCCAGAAATAATGTAC 59.934 47.826 6.23 0.00 36.97 2.90
622 624 3.283751 CGGTTGGGCCAGAAATAATGTA 58.716 45.455 6.23 0.00 36.97 2.29
623 625 2.099405 CGGTTGGGCCAGAAATAATGT 58.901 47.619 6.23 0.00 36.97 2.71
624 626 2.099405 ACGGTTGGGCCAGAAATAATG 58.901 47.619 6.23 0.00 36.97 1.90
625 627 2.525105 ACGGTTGGGCCAGAAATAAT 57.475 45.000 6.23 0.00 36.97 1.28
626 628 3.655615 ATACGGTTGGGCCAGAAATAA 57.344 42.857 6.23 0.00 36.97 1.40
627 629 3.655615 AATACGGTTGGGCCAGAAATA 57.344 42.857 6.23 0.00 36.97 1.40
628 630 2.495669 CAAATACGGTTGGGCCAGAAAT 59.504 45.455 6.23 0.00 36.97 2.17
629 631 1.889829 CAAATACGGTTGGGCCAGAAA 59.110 47.619 6.23 0.00 36.97 2.52
630 632 1.202952 ACAAATACGGTTGGGCCAGAA 60.203 47.619 6.23 0.00 36.97 3.02
631 633 0.402504 ACAAATACGGTTGGGCCAGA 59.597 50.000 6.23 0.00 36.97 3.86
632 634 0.525761 CACAAATACGGTTGGGCCAG 59.474 55.000 6.23 0.00 36.97 4.85
633 635 0.110678 TCACAAATACGGTTGGGCCA 59.889 50.000 0.00 0.00 36.97 5.36
634 636 0.524414 GTCACAAATACGGTTGGGCC 59.476 55.000 0.00 0.00 31.59 5.80
635 637 1.240256 TGTCACAAATACGGTTGGGC 58.760 50.000 0.00 0.00 31.59 5.36
636 638 3.504134 TGATTGTCACAAATACGGTTGGG 59.496 43.478 0.00 0.00 32.88 4.12
637 639 4.472286 GTGATTGTCACAAATACGGTTGG 58.528 43.478 0.00 0.00 46.22 3.77
652 654 7.129457 ACCAGACATATATGACAGTGATTGT 57.871 36.000 19.63 1.05 44.55 2.71
653 655 8.340443 CAAACCAGACATATATGACAGTGATTG 58.660 37.037 19.63 11.92 0.00 2.67
654 656 8.049117 ACAAACCAGACATATATGACAGTGATT 58.951 33.333 19.63 0.00 0.00 2.57
655 657 7.568349 ACAAACCAGACATATATGACAGTGAT 58.432 34.615 19.63 5.70 0.00 3.06
656 658 6.946340 ACAAACCAGACATATATGACAGTGA 58.054 36.000 19.63 0.00 0.00 3.41
657 659 7.615582 AACAAACCAGACATATATGACAGTG 57.384 36.000 19.63 8.30 0.00 3.66
658 660 7.121168 CCAAACAAACCAGACATATATGACAGT 59.879 37.037 19.63 11.45 0.00 3.55
659 661 7.121168 ACCAAACAAACCAGACATATATGACAG 59.879 37.037 19.63 9.85 0.00 3.51
660 662 6.945435 ACCAAACAAACCAGACATATATGACA 59.055 34.615 19.63 0.00 0.00 3.58
661 663 7.391148 ACCAAACAAACCAGACATATATGAC 57.609 36.000 19.63 13.10 0.00 3.06
662 664 9.521841 TTAACCAAACAAACCAGACATATATGA 57.478 29.630 19.63 0.00 0.00 2.15
666 668 8.646900 ACATTTAACCAAACAAACCAGACATAT 58.353 29.630 0.00 0.00 0.00 1.78
667 669 8.012957 ACATTTAACCAAACAAACCAGACATA 57.987 30.769 0.00 0.00 0.00 2.29
668 670 6.883744 ACATTTAACCAAACAAACCAGACAT 58.116 32.000 0.00 0.00 0.00 3.06
669 671 6.153680 AGACATTTAACCAAACAAACCAGACA 59.846 34.615 0.00 0.00 0.00 3.41
670 672 6.569780 AGACATTTAACCAAACAAACCAGAC 58.430 36.000 0.00 0.00 0.00 3.51
671 673 6.605594 AGAGACATTTAACCAAACAAACCAGA 59.394 34.615 0.00 0.00 0.00 3.86
672 674 6.805713 AGAGACATTTAACCAAACAAACCAG 58.194 36.000 0.00 0.00 0.00 4.00
673 675 6.183360 GGAGAGACATTTAACCAAACAAACCA 60.183 38.462 0.00 0.00 0.00 3.67
674 676 6.040504 AGGAGAGACATTTAACCAAACAAACC 59.959 38.462 0.00 0.00 0.00 3.27
675 677 6.918022 CAGGAGAGACATTTAACCAAACAAAC 59.082 38.462 0.00 0.00 0.00 2.93
676 678 6.040391 CCAGGAGAGACATTTAACCAAACAAA 59.960 38.462 0.00 0.00 0.00 2.83
677 679 5.534654 CCAGGAGAGACATTTAACCAAACAA 59.465 40.000 0.00 0.00 0.00 2.83
678 680 5.070001 CCAGGAGAGACATTTAACCAAACA 58.930 41.667 0.00 0.00 0.00 2.83
679 681 4.459337 CCCAGGAGAGACATTTAACCAAAC 59.541 45.833 0.00 0.00 0.00 2.93
680 682 4.105697 ACCCAGGAGAGACATTTAACCAAA 59.894 41.667 0.00 0.00 0.00 3.28
681 683 3.655777 ACCCAGGAGAGACATTTAACCAA 59.344 43.478 0.00 0.00 0.00 3.67
682 684 3.256704 ACCCAGGAGAGACATTTAACCA 58.743 45.455 0.00 0.00 0.00 3.67
683 685 4.302559 AACCCAGGAGAGACATTTAACC 57.697 45.455 0.00 0.00 0.00 2.85
684 686 6.295719 TCTAACCCAGGAGAGACATTTAAC 57.704 41.667 0.00 0.00 0.00 2.01
685 687 6.632672 GCATCTAACCCAGGAGAGACATTTAA 60.633 42.308 0.00 0.00 0.00 1.52
686 688 5.163301 GCATCTAACCCAGGAGAGACATTTA 60.163 44.000 0.00 0.00 0.00 1.40
687 689 4.384647 GCATCTAACCCAGGAGAGACATTT 60.385 45.833 0.00 0.00 0.00 2.32
688 690 3.135530 GCATCTAACCCAGGAGAGACATT 59.864 47.826 0.00 0.00 0.00 2.71
689 691 2.703007 GCATCTAACCCAGGAGAGACAT 59.297 50.000 0.00 0.00 0.00 3.06
690 692 2.111384 GCATCTAACCCAGGAGAGACA 58.889 52.381 0.00 0.00 0.00 3.41
691 693 2.111384 TGCATCTAACCCAGGAGAGAC 58.889 52.381 0.00 0.00 0.00 3.36
692 694 2.550277 TGCATCTAACCCAGGAGAGA 57.450 50.000 0.00 0.00 0.00 3.10
693 695 3.853355 AATGCATCTAACCCAGGAGAG 57.147 47.619 0.00 0.00 0.00 3.20
694 696 5.045213 TGTTAAATGCATCTAACCCAGGAGA 60.045 40.000 18.05 0.00 0.00 3.71
695 697 5.192927 TGTTAAATGCATCTAACCCAGGAG 58.807 41.667 18.05 0.00 0.00 3.69
696 698 5.186256 TGTTAAATGCATCTAACCCAGGA 57.814 39.130 18.05 0.00 0.00 3.86
697 699 5.913137 TTGTTAAATGCATCTAACCCAGG 57.087 39.130 18.05 0.00 0.00 4.45
698 700 7.156876 TCTTTGTTAAATGCATCTAACCCAG 57.843 36.000 18.05 13.78 0.00 4.45
699 701 7.531857 TTCTTTGTTAAATGCATCTAACCCA 57.468 32.000 18.05 4.51 0.00 4.51
700 702 8.825667 TTTTCTTTGTTAAATGCATCTAACCC 57.174 30.769 18.05 0.00 0.00 4.11
792 796 5.186942 GTTTGGTTTTGTTTGGGGTGTATT 58.813 37.500 0.00 0.00 0.00 1.89
793 797 4.384318 GGTTTGGTTTTGTTTGGGGTGTAT 60.384 41.667 0.00 0.00 0.00 2.29
933 947 1.375396 CAGATCGCAACGGGGAACA 60.375 57.895 0.00 0.00 39.63 3.18
1154 1168 2.438614 CCTCTCGACGGAGCTCCA 60.439 66.667 31.67 11.96 40.26 3.86
1544 1559 2.058001 ACGGACGCCATCATCCAGA 61.058 57.895 0.00 0.00 34.35 3.86
1550 1565 0.249120 ATCTTTCACGGACGCCATCA 59.751 50.000 0.00 0.00 0.00 3.07
1553 1568 0.250124 AACATCTTTCACGGACGCCA 60.250 50.000 0.00 0.00 0.00 5.69
1700 1715 1.405105 GTGGCTTGTTTGTCAGCTTCA 59.595 47.619 0.00 0.00 0.00 3.02
1757 1774 2.234896 TGGTCCGTAGTCACCCAATA 57.765 50.000 0.00 0.00 0.00 1.90
1882 1918 0.541998 TCCTCGCCTTCTCCTGACAA 60.542 55.000 0.00 0.00 0.00 3.18
1885 1921 1.682684 GGTCCTCGCCTTCTCCTGA 60.683 63.158 0.00 0.00 0.00 3.86
1933 1970 2.203070 GCCGTCGATCTTGCCCAT 60.203 61.111 0.00 0.00 0.00 4.00
2120 2240 8.578448 AACAAATATTTGGCATAATTTTGGCT 57.422 26.923 27.43 6.09 42.34 4.75
2145 2290 6.707290 AGACAACATAGTACCAGCACATTAA 58.293 36.000 0.00 0.00 0.00 1.40
2218 2412 7.014711 TGGTAAAATATGTTCTCTTTTGGCACA 59.985 33.333 0.00 0.00 0.00 4.57
2219 2413 7.375053 TGGTAAAATATGTTCTCTTTTGGCAC 58.625 34.615 0.00 0.00 0.00 5.01
2220 2414 7.531857 TGGTAAAATATGTTCTCTTTTGGCA 57.468 32.000 0.00 0.00 0.00 4.92
2221 2415 7.063426 GCTTGGTAAAATATGTTCTCTTTTGGC 59.937 37.037 0.00 0.00 0.00 4.52
2222 2416 8.306761 AGCTTGGTAAAATATGTTCTCTTTTGG 58.693 33.333 0.00 0.00 0.00 3.28
2223 2417 9.696917 AAGCTTGGTAAAATATGTTCTCTTTTG 57.303 29.630 0.00 0.00 0.00 2.44
2224 2418 9.914131 GAAGCTTGGTAAAATATGTTCTCTTTT 57.086 29.630 2.10 0.00 0.00 2.27
2225 2419 9.301897 AGAAGCTTGGTAAAATATGTTCTCTTT 57.698 29.630 2.10 0.00 0.00 2.52
2226 2420 8.870075 AGAAGCTTGGTAAAATATGTTCTCTT 57.130 30.769 2.10 0.00 0.00 2.85
2336 2530 8.681806 TGATGAACTTGTGTTTGTTTCTATGAA 58.318 29.630 0.00 0.00 36.39 2.57
2337 2531 8.219546 TGATGAACTTGTGTTTGTTTCTATGA 57.780 30.769 0.00 0.00 36.39 2.15
2338 2532 8.854979 TTGATGAACTTGTGTTTGTTTCTATG 57.145 30.769 0.00 0.00 36.39 2.23
2339 2533 9.301153 GTTTGATGAACTTGTGTTTGTTTCTAT 57.699 29.630 0.00 0.00 36.39 1.98
2340 2534 8.300286 TGTTTGATGAACTTGTGTTTGTTTCTA 58.700 29.630 0.00 0.00 39.08 2.10
2343 2537 7.151308 TCTGTTTGATGAACTTGTGTTTGTTT 58.849 30.769 0.00 0.00 39.08 2.83
2385 2583 4.677584 TGCATGAACTTGTGTTTGTTACC 58.322 39.130 0.00 0.00 36.39 2.85
2495 2709 4.038633 GGAGGAAATCTACCAGGGTTAGT 58.961 47.826 0.00 0.00 0.00 2.24
2549 2763 0.322648 GGCCTCCAAAGCAAGCAAAT 59.677 50.000 0.00 0.00 0.00 2.32
2736 3016 5.729229 TGTAGGAAAATCCTCCAAGGACATA 59.271 40.000 1.36 0.00 45.66 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.